AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1207920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1207920 MtrunA17_Chr4g0056891 98.707 232 3 0 4 235 1 232 9.26e-172 471
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1207920 AT1G62850.2 66.518 224 63 4 16 235 20 235 9.55e-94 275
Msa1207920 AT1G62850.3 66.518 224 63 4 16 235 20 235 9.55e-94 275
Msa1207920 AT1G62850.4 66.667 195 53 4 16 206 20 206 2.39e-80 239

Find 91 sgRNAs with CRISPR-Local

Find 400 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTTAATACTACCATAAT+TGG 0.127862 8_1:+65774339 Msa1207920:three_prime_UTR
TCCAATTATGGTAGTATTAA+AGG 0.179603 8_1:-65774340 None:intergenic
GATAGATAGTTTAAAGATTC+TGG 0.203643 8_1:-65774186 None:intergenic
GCTTCCTCAGCTTCAGATTC+TGG 0.206596 8_1:+65769216 Msa1207920:CDS
TAGATCGATGTTCGGCTTCT+TGG 0.249968 8_1:-65769284 None:intergenic
AAACTTCTGTGTTCTAGTTT+TGG 0.258270 8_1:-65772536 None:intergenic
AAAGAAAAGAAAGAGGGTTT+TGG 0.268058 8_1:+65768985 Msa1207920:five_prime_UTR
ATGTATGATGTATCCAATTA+TGG 0.303636 8_1:-65774352 None:intergenic
GGATGCTTTGGCAAAGCTTC+AGG 0.322950 8_1:+65772655 Msa1207920:CDS
TGCTCTTCTGAGGGAGGTGG+TGG 0.329151 8_1:-65773895 None:intergenic
GAATTCGACATGTGTCTTTA+CGG 0.331461 8_1:+65774592 Msa1207920:three_prime_UTR
AATGTTACCTTCACTTGATA+AGG 0.333324 8_1:+65774744 Msa1207920:three_prime_UTR
TCAGCTTAAGCCGCGATTAC+GGG 0.342963 8_1:+65774570 Msa1207920:three_prime_UTR
AAGCAATGTACTACTGGAAT+TGG 0.353382 8_1:-65774705 None:intergenic
ATTAATGTTGTTTGAATCCT+TGG 0.353412 8_1:-65774412 None:intergenic
GTCAGCTTAAGCCGCGATTA+CGG 0.354010 8_1:+65774569 Msa1207920:three_prime_UTR
TTTGTACTTGGGAGAAGGTT+GGG 0.373564 8_1:+65774646 Msa1207920:three_prime_UTR
GTTAAAGAAATATTTATGTT+TGG 0.375505 8_1:-65774877 None:intergenic
ACCTTCACTTGATAAGGGTT+TGG 0.380483 8_1:+65774750 Msa1207920:three_prime_UTR
CTTCCTCAGCTTCAGATTCT+GGG 0.393020 8_1:+65769217 Msa1207920:CDS
CCCATTCCTAAAATCACTTT+GGG 0.395822 8_1:+65769327 Msa1207920:CDS
TGAAGAGAGGAGAGGAAGAA+AGG 0.398042 8_1:-65769156 None:intergenic
CCCCATTCCTAAAATCACTT+TGG 0.402112 8_1:+65769326 Msa1207920:CDS
ATGTTACCTTCACTTGATAA+GGG 0.403161 8_1:+65774745 Msa1207920:three_prime_UTR
AATTCGACATGTGTCTTTAC+GGG 0.406954 8_1:+65774593 Msa1207920:three_prime_UTR
TGAAACAAAACTTGGATGTA+TGG 0.414686 8_1:+65769030 Msa1207920:exon
ATAGTAAAGCAATGTACTAC+TGG 0.416302 8_1:-65774711 None:intergenic
AGAGGAAGAAAGGGCGAGAA+AGG 0.436039 8_1:-65769146 None:intergenic
GAAGAGAGGAGAGGAAGAAA+GGG 0.445403 8_1:-65769155 None:intergenic
AAAGAAGAAGTAAAAGTAGT+TGG 0.447871 8_1:+65774146 Msa1207920:CDS
CGGCTTCTTGGAGAAGCTCA+TGG 0.448424 8_1:-65769272 None:intergenic
ATTGGCTAAGTGAAAGGGTC+AGG 0.448821 8_1:+65771709 Msa1207920:CDS
GGGTAACATTGAGGATGCTT+TGG 0.448922 8_1:+65772643 Msa1207920:CDS
CAGGGAGAAGATTATGCAAA+TGG 0.463990 8_1:+65771728 Msa1207920:CDS
GAGCTACGATTTAATGCAAT+AGG 0.468093 8_1:+65774495 Msa1207920:three_prime_UTR
GTAATGCGAAGAAGAGAAGA+AGG 0.469023 8_1:-65769117 None:intergenic
CAAAAGAAAAGAAAAGAAAG+AGG 0.469548 8_1:+65768978 Msa1207920:five_prime_UTR
AAGAAGAAGTAAAAGTAGTT+GGG 0.476573 8_1:+65774147 Msa1207920:CDS
GAGACGTTTGTGCTCTCCTA+TGG 0.480721 8_1:-65774089 None:intergenic
TTTAAACCTGAAACAAAACT+TGG 0.487818 8_1:+65769022 Msa1207920:five_prime_UTR
ACATCATGACATCAGATGAT+TGG 0.489650 8_1:+65774377 Msa1207920:three_prime_UTR
GTCGACATGCGGTTCAATGT+TGG 0.505525 8_1:+65771678 Msa1207920:CDS
TTGTAGATAAAAGCAACATA+TGG 0.511382 8_1:-65774537 None:intergenic
CAAAACTTGGATGTATGGTA+TGG 0.514654 8_1:+65769035 Msa1207920:exon
GGCTTCAACAACCACTAGAA+TGG 0.521120 8_1:+65769056 Msa1207920:CDS
ATGCAGCAATAAAACCACTT+TGG 0.530385 8_1:-65774450 None:intergenic
TTTCTTCAGGGGTAACATTG+AGG 0.534771 8_1:+65772634 Msa1207920:intron
GCTCTTCTGAGGGAGGTGGT+GGG 0.534879 8_1:-65773894 None:intergenic
GCGCATCGAATTGCAGTGGC+GGG 0.539361 8_1:-65769195 None:intergenic
AGTATCCTCTCGGCTTTCGC+AGG 0.539470 8_1:+65769248 Msa1207920:CDS
AGCGGAGATAGATCGATGTT+CGG 0.541156 8_1:-65769292 None:intergenic
ATTGAACCGCATGTCGACCT+TGG 0.541896 8_1:-65771673 None:intergenic
AAAAGAAAAGAAAAGAAAGA+GGG 0.542786 8_1:+65768979 Msa1207920:five_prime_UTR
TTTGCCAGAAGTGGAGGACC+TGG 0.545145 8_1:+65769514 Msa1207920:CDS
GGCACATTGGCTAAGTGAAA+GGG 0.546502 8_1:+65771704 Msa1207920:CDS
TATTCCTTTCACCATTCTAG+TGG 0.547459 8_1:-65769067 None:intergenic
CACTTCTGTAGGGCTGCCAT+AGG 0.548523 8_1:+65774073 Msa1207920:intron
AAAATCGTATGAACAAGGAT+GGG 0.550226 8_1:+65772494 Msa1207920:CDS
TGCCAGAAGTGGAGGACCTG+GGG 0.553451 8_1:+65769516 Msa1207920:CDS
AATGCGAAGAAGAGAAGAAG+GGG 0.560405 8_1:-65769115 None:intergenic
AGGCACATTGGCTAAGTGAA+AGG 0.561094 8_1:+65771703 Msa1207920:CDS
TTGCCAGAAGTGGAGGACCT+GGG 0.565073 8_1:+65769515 Msa1207920:CDS
TACGGGAAGTCAACAACCCT+GGG 0.571478 8_1:+65774610 Msa1207920:three_prime_UTR
AACAACATTAATCAACATGA+AGG 0.575498 8_1:+65774423 Msa1207920:three_prime_UTR
GCCAAACCCTTATCAAGTGA+AGG 0.576756 8_1:-65774751 None:intergenic
CTATCAGAAACTAAATCACA+AGG 0.584249 8_1:-65774671 None:intergenic
TAATGCGAAGAAGAGAAGAA+GGG 0.588164 8_1:-65769116 None:intergenic
CATGCGGTTCAATGTTGGAA+AGG 0.591093 8_1:+65771683 Msa1207920:CDS
AGTGTTGGTCAAATTTGTGA+TGG 0.593127 8_1:+65774473 Msa1207920:three_prime_UTR
AGCGCATCGAATTGCAGTGG+CGG 0.596376 8_1:-65769196 None:intergenic
GGAACAACAAAGTATCCTCT+CGG 0.606425 8_1:+65769238 Msa1207920:CDS
CAAACGTCTCAAAAGCAAGA+AGG 0.607475 8_1:+65774102 Msa1207920:CDS
TTACGGGAAGTCAACAACCC+TGG 0.618750 8_1:+65774609 Msa1207920:three_prime_UTR
TCAATGTTGGAAAGGCACAT+TGG 0.618902 8_1:+65771691 Msa1207920:CDS
AAATCGTATGAACAAGGATG+GGG 0.621165 8_1:+65772495 Msa1207920:CDS
GTTCCCAGAATCTGAAGCTG+AGG 0.628074 8_1:-65769220 None:intergenic
TTGGCTAAGTGAAAGGGTCA+GGG 0.636328 8_1:+65771710 Msa1207920:CDS
CGAGCGCTGTAATTGAAGAG+AGG 0.641440 8_1:-65769169 None:intergenic
ACAACCACTAGAATGGTGAA+AGG 0.641721 8_1:+65769063 Msa1207920:CDS
GCCAGAAGTGGAGGACCTGG+GGG 0.642506 8_1:+65769517 Msa1207920:CDS
ATGCGAAGAAGAGAAGAAGG+GGG 0.642820 8_1:-65769114 None:intergenic
AACATGAAGGATATCCAAAG+TGG 0.646604 8_1:+65774436 Msa1207920:three_prime_UTR
ATGTCGAATTCCCGTAATCG+CGG 0.652513 8_1:-65774580 None:intergenic
ATTGGTTGAAGATATAACCA+AGG 0.657210 8_1:+65774395 Msa1207920:three_prime_UTR
AATCGCGGCTTAAGCTGACA+AGG 0.661744 8_1:-65774565 None:intergenic
TATCAGAAACTAAATCACAA+GGG 0.677403 8_1:-65774670 None:intergenic
GCTGTAATTGAAGAGAGGAG+AGG 0.684565 8_1:-65769164 None:intergenic
GGAAGCGCATCGAATTGCAG+TGG 0.684620 8_1:-65769199 None:intergenic
ATGGACCTGCGAAAGCCGAG+AGG 0.719112 8_1:-65769253 None:intergenic
TGAACACCAAGGTCGACATG+CGG 0.719333 8_1:+65771667 Msa1207920:CDS
TGATTGTACAGTGAACACCA+AGG 0.820851 8_1:+65771656 Msa1207920:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAGAAAAAAAATATTAGA+TGG + chr8_1:65772065-65772084 Msa1207920:intron 10.0%
!! AATATGTTTCTTATAAATAA+TGG - chr8_1:65772334-65772353 None:intergenic 10.0%
!! TTTATAAGAAACATATTTAT+AGG + chr8_1:65772337-65772356 Msa1207920:intron 10.0%
!!! TGATTTTTATATAGTTTTGT+TGG + chr8_1:65769467-65769486 Msa1207920:intron 15.0%
!!! GATTTTTATATAGTTTTGTT+GGG + chr8_1:65769468-65769487 Msa1207920:intron 15.0%
!!! AATTCATTTTATAAGGTATT+AGG + chr8_1:65769611-65769630 Msa1207920:intron 15.0%
!! TAAAATAAATCAATCTTCAA+AGG + chr8_1:65769843-65769862 Msa1207920:intron 15.0%
!!! TATCTAATGTAAATTTTGTA+GGG + chr8_1:65771257-65771276 Msa1207920:intron 15.0%
!! TAGTTAAATTTCATACAAAA+TGG + chr8_1:65771908-65771927 Msa1207920:intron 15.0%
!! AGTTAAATTTCATACAAAAT+GGG + chr8_1:65771909-65771928 Msa1207920:intron 15.0%
!! TATTTATAGAGAAAAAGAAA+GGG - chr8_1:65772162-65772181 None:intergenic 15.0%
!! ATATTTATAGAGAAAAAGAA+AGG - chr8_1:65772163-65772182 None:intergenic 15.0%
!! ATAAATATTTGTAAGCTAAT+AGG + chr8_1:65772175-65772194 Msa1207920:intron 15.0%
!! TAAATATTTGTAAGCTAATA+GGG + chr8_1:65772176-65772195 Msa1207920:intron 15.0%
!! AATACAAAAATTCAATAGAA+TGG - chr8_1:65772569-65772588 None:intergenic 15.0%
!! CATATAATTATAACTTCAAA+GGG - chr8_1:65773668-65773687 None:intergenic 15.0%
!! ACATATAATTATAACTTCAA+AGG - chr8_1:65773669-65773688 None:intergenic 15.0%
!! TTAAAATACGGTTTATTATT+TGG + chr8_1:65773985-65774004 Msa1207920:intron 15.0%
!!! TTATTTTAATTCAACTGTTT+TGG + chr8_1:65774817-65774836 Msa1207920:three_prime_UTR 15.0%
!! GTTAAAGAAATATTTATGTT+TGG - chr8_1:65774880-65774899 None:intergenic 15.0%
!! AAAAGAAAAGAAAAGAAAGA+GGG + chr8_1:65768979-65768998 Msa1207920:five_prime_UTR 20.0%
!!! GTGTAAGAATTCATTTTATA+AGG + chr8_1:65769604-65769623 Msa1207920:intron 20.0%
!! TTAATTCAACATGATATACA+AGG - chr8_1:65769661-65769680 None:intergenic 20.0%
!! GAAAAAAATCTTAATAGCTA+AGG + chr8_1:65769695-65769714 Msa1207920:intron 20.0%
!! AAATACTTTAAACATCTTGA+AGG + chr8_1:65770061-65770080 Msa1207920:intron 20.0%
!! AAAACATTCATAAATAACAG+AGG + chr8_1:65770423-65770442 Msa1207920:intron 20.0%
!! AAACATTCATAAATAACAGA+GGG + chr8_1:65770424-65770443 Msa1207920:intron 20.0%
!! TATAATTGTTGAGAAAAAAG+TGG + chr8_1:65770513-65770532 Msa1207920:intron 20.0%
!!! CTATTTTAAGTTTTTTTGCT+TGG + chr8_1:65770783-65770802 Msa1207920:intron 20.0%
!! TCAATTTAAACTGATATGAA+GGG - chr8_1:65770946-65770965 None:intergenic 20.0%
!!! TTTTGTAATTTGTAGGATTA+TGG - chr8_1:65771217-65771236 None:intergenic 20.0%
!! CAAAATTTACATTAGATACA+GGG - chr8_1:65771255-65771274 None:intergenic 20.0%
!! ACAAAATTTACATTAGATAC+AGG - chr8_1:65771256-65771275 None:intergenic 20.0%
!!! GTATCTAATGTAAATTTTGT+AGG + chr8_1:65771256-65771275 Msa1207920:intron 20.0%
!!! ATCTAATGTAAATTTTGTAG+GGG + chr8_1:65771258-65771277 Msa1207920:intron 20.0%
!! TTAACTATTATTTAGCAAGA+AGG - chr8_1:65771895-65771914 None:intergenic 20.0%
!! GAAAAAAAATATTAGATGGA+TGG + chr8_1:65772069-65772088 Msa1207920:intron 20.0%
!!! ACTGAAGTATTTAAGTTTTA+AGG - chr8_1:65772754-65772773 None:intergenic 20.0%
!!! TTTAAAATGCCACTATTATT+GGG - chr8_1:65772885-65772904 None:intergenic 20.0%
!!! ATTTAAAATGCCACTATTAT+TGG - chr8_1:65772886-65772905 None:intergenic 20.0%
!!! TTCTATTACTTATTTTTCTC+TGG + chr8_1:65772978-65772997 Msa1207920:intron 20.0%
!!! TAGAATTTGATTTACTATGA+GGG - chr8_1:65773144-65773163 None:intergenic 20.0%
!!! TTAGAATTTGATTTACTATG+AGG - chr8_1:65773145-65773164 None:intergenic 20.0%
!!! AAATCAAATTCTAAGAGTTT+TGG + chr8_1:65773151-65773170 Msa1207920:intron 20.0%
!!! ATTCTTGATTGAAGTATTAA+AGG + chr8_1:65773228-65773247 Msa1207920:intron 20.0%
!! TTCTTCTTTACTATCTATAT+TGG + chr8_1:65773279-65773298 Msa1207920:intron 20.0%
!! TAATTATATGTAACTCTTTG+TGG + chr8_1:65773678-65773697 Msa1207920:intron 20.0%
!! TGTAATTGAAAAGGAATTAA+GGG - chr8_1:65773769-65773788 None:intergenic 20.0%
!!! TGTTTTGAAAGATATAACAA+TGG + chr8_1:65773812-65773831 Msa1207920:intron 20.0%
!! ATACATATTCTTTATTCTTC+AGG + chr8_1:65773962-65773981 Msa1207920:intron 20.0%
!!! TTATTCTTCAGGTTAAAATA+CGG + chr8_1:65773973-65773992 Msa1207920:intron 20.0%
!! AGAATGACATAAAAGAAATT+TGG - chr8_1:65774270-65774289 None:intergenic 20.0%
! CAAAAGAAAAGAAAAGAAAG+AGG + chr8_1:65768978-65768997 Msa1207920:five_prime_UTR 25.0%
! TTTAAACCTGAAACAAAACT+TGG + chr8_1:65769022-65769041 Msa1207920:five_prime_UTR 25.0%
!!! GTCTATGTTTTTTTTGCTTA+AGG + chr8_1:65769582-65769601 Msa1207920:intron 25.0%
! TTAAAACTCAATTGAAGCTA+CGG - chr8_1:65769747-65769766 None:intergenic 25.0%
! ATTAAATCAGGTAAAAGCTA+CGG - chr8_1:65769783-65769802 None:intergenic 25.0%
!! ATGATTTCAGTAGAATGTTT+TGG + chr8_1:65770313-65770332 Msa1207920:intron 25.0%
! ATAGCTAAGAAAATCAACAT+GGG - chr8_1:65770767-65770786 None:intergenic 25.0%
! AATAGCTAAGAAAATCAACA+TGG - chr8_1:65770768-65770787 None:intergenic 25.0%
! GTTCATGAATACATAAGTAA+AGG - chr8_1:65770846-65770865 None:intergenic 25.0%
! GTCAATTTAAACTGATATGA+AGG - chr8_1:65770947-65770966 None:intergenic 25.0%
! ACTAAGTTGTTTATCCAAAT+AGG + chr8_1:65771191-65771210 Msa1207920:intron 25.0%
!! ATTCGTTTTATATCCATGTT+GGG + chr8_1:65771299-65771318 Msa1207920:intron 25.0%
!! TTTAAGTTATTAACTGCAAG+TGG - chr8_1:65771623-65771642 None:intergenic 25.0%
! AATTTATGACTCTTTACCTA+CGG - chr8_1:65772208-65772227 None:intergenic 25.0%
! ACATAAACCTTAACTTTGTA+CGG + chr8_1:65772305-65772324 Msa1207920:intron 25.0%
! AAAATTCAATAGAATGGAAG+AGG - chr8_1:65772563-65772582 None:intergenic 25.0%
!!! GTATTTTTTTCATTGTATGC+TGG + chr8_1:65772584-65772603 Msa1207920:intron 25.0%
! TTATTCTTTCCCAATAATAG+TGG + chr8_1:65772873-65772892 Msa1207920:intron 25.0%
!!! TATTACTTATTTTTCTCTGG+TGG + chr8_1:65772981-65773000 Msa1207920:intron 25.0%
!!! ACTTTTGTTATAAAGACAGT+AGG - chr8_1:65773346-65773365 None:intergenic 25.0%
!!! CTTTTCTTTGAGGAAATTAT+TGG - chr8_1:65773493-65773512 None:intergenic 25.0%
! AAATGGATCTTATATTAAGG+GGG - chr8_1:65773571-65773590 None:intergenic 25.0%
! GAAATGGATCTTATATTAAG+GGG - chr8_1:65773572-65773591 None:intergenic 25.0%
! GGAAATGGATCTTATATTAA+GGG - chr8_1:65773573-65773592 None:intergenic 25.0%
! TGGAAATGGATCTTATATTA+AGG - chr8_1:65773574-65773593 None:intergenic 25.0%
! GTAATTGAAAAGGAATTAAG+GGG - chr8_1:65773768-65773787 None:intergenic 25.0%
! GTGTAATTGAAAAGGAATTA+AGG - chr8_1:65773770-65773789 None:intergenic 25.0%
!! TGCTTTTCTGTTTATGAAAT+GGG + chr8_1:65773835-65773854 Msa1207920:intron 25.0%
! TTATGAAATGGGGAAAAAAT+AGG + chr8_1:65773846-65773865 Msa1207920:intron 25.0%
!! ATTTGGTTAACATTTTGCTA+AGG + chr8_1:65774002-65774021 Msa1207920:intron 25.0%
!! TTTGGTTAACATTTTGCTAA+GGG + chr8_1:65774003-65774022 Msa1207920:intron 25.0%
! AAAGAAGAAGTAAAAGTAGT+TGG + chr8_1:65774146-65774165 Msa1207920:CDS 25.0%
! AAGAAGAAGTAAAAGTAGTT+GGG + chr8_1:65774147-65774166 Msa1207920:CDS 25.0%
! GATAGATAGTTTAAAGATTC+TGG - chr8_1:65774189-65774208 None:intergenic 25.0%
!! AAAAGAAATTTGGTAATAGC+AGG - chr8_1:65774260-65774279 None:intergenic 25.0%
! TCCTTTAATACTACCATAAT+TGG + chr8_1:65774339-65774358 Msa1207920:three_prime_UTR 25.0%
! TCCAATTATGGTAGTATTAA+AGG - chr8_1:65774343-65774362 None:intergenic 25.0%
! ATGTATGATGTATCCAATTA+TGG - chr8_1:65774355-65774374 None:intergenic 25.0%
!! ATTAATGTTGTTTGAATCCT+TGG - chr8_1:65774415-65774434 None:intergenic 25.0%
! AACAACATTAATCAACATGA+AGG + chr8_1:65774423-65774442 Msa1207920:three_prime_UTR 25.0%
! TTGTAGATAAAAGCAACATA+TGG - chr8_1:65774540-65774559 None:intergenic 25.0%
! TATCAGAAACTAAATCACAA+GGG - chr8_1:65774673-65774692 None:intergenic 25.0%
! AAAGAAAAGAAAGAGGGTTT+TGG + chr8_1:65768985-65769004 Msa1207920:five_prime_UTR 30.0%
! AAGAAAAGAAAGAGGGTTTT+GGG + chr8_1:65768986-65769005 Msa1207920:five_prime_UTR 30.0%
!!! ATACATCCAAGTTTTGTTTC+AGG - chr8_1:65769031-65769050 None:intergenic 30.0%
TGAAACAAAACTTGGATGTA+TGG + chr8_1:65769030-65769049 Msa1207920:exon 30.0%
TCAAGGAATGAGAAAATTGA+TGG - chr8_1:65769365-65769384 None:intergenic 30.0%
GGAGTAGAAATCATATAGAA+AGG + chr8_1:65769632-65769651 Msa1207920:intron 30.0%
AATAGCTAAGGAAATCAACA+TGG + chr8_1:65769707-65769726 Msa1207920:intron 30.0%
ATAGCTAAGGAAATCAACAT+GGG + chr8_1:65769708-65769727 Msa1207920:intron 30.0%
!!! TTGAGTTTTAAGACATTTCC+TGG + chr8_1:65769756-65769775 Msa1207920:intron 30.0%
GCAATGTTGGAAATTAAATC+AGG - chr8_1:65769795-65769814 None:intergenic 30.0%
GTTGAAGATGCTTGATATAA+GGG - chr8_1:65769820-65769839 None:intergenic 30.0%
AGTTGAAGATGCTTGATATA+AGG - chr8_1:65769821-65769840 None:intergenic 30.0%
GTATTTGTAGAGTAACAAAG+TGG - chr8_1:65770047-65770066 None:intergenic 30.0%
! AAATGCTTTAAACGTCTTGA+AGG - chr8_1:65770376-65770395 None:intergenic 30.0%
ACAAACATCTTTGAGCAATA+TGG + chr8_1:65770465-65770484 Msa1207920:intron 30.0%
TAGAACAACTCAATCTTCAA+AGG - chr8_1:65770578-65770597 None:intergenic 30.0%
! TACAAGTTGAAGAAGATGTT+TGG + chr8_1:65770596-65770615 Msa1207920:intron 30.0%
! ACAAGTTGAAGAAGATGTTT+GGG + chr8_1:65770597-65770616 Msa1207920:intron 30.0%
CATGAATACATAAGTAAAGG+AGG - chr8_1:65770843-65770862 None:intergenic 30.0%
ACTTATTAGAGCTTATGTAC+TGG + chr8_1:65770965-65770984 Msa1207920:intron 30.0%
TTTGGATAAACAACTTAGTG+AGG - chr8_1:65771190-65771209 None:intergenic 30.0%
!!! CATGTGGTTTTGTAATTTGT+AGG - chr8_1:65771224-65771243 None:intergenic 30.0%
CAACATGGATATAAAACGAA+TGG - chr8_1:65771300-65771319 None:intergenic 30.0%
! CATTCGTTTTATATCCATGT+TGG + chr8_1:65771298-65771317 Msa1207920:intron 30.0%
TGTGTGTATTGTGATATGAT+AGG + chr8_1:65771338-65771357 Msa1207920:intron 30.0%
ATTGTGATATGATAGGAAAC+TGG + chr8_1:65771345-65771364 Msa1207920:intron 30.0%
GACTTTCTGTTATAGAAGAA+AGG + chr8_1:65771440-65771459 Msa1207920:intron 30.0%
TCTGTTATAGAAGAAAGGAT+AGG + chr8_1:65771445-65771464 Msa1207920:intron 30.0%
CTGTTATAGAAGAAAGGATA+GGG + chr8_1:65771446-65771465 Msa1207920:intron 30.0%
TGTTATAGAAGAAAGGATAG+GGG + chr8_1:65771447-65771466 Msa1207920:intron 30.0%
!! AGAGTTGTTTAGAGTCATTT+TGG + chr8_1:65771489-65771508 Msa1207920:intron 30.0%
AAACAGTCAATCACATGATT+TGG - chr8_1:65771784-65771803 None:intergenic 30.0%
!!! AGTATTTTAGGTTTGAAGCA+GGG - chr8_1:65771951-65771970 None:intergenic 30.0%
CTCAAGTTAAAGCACATTAT+TGG - chr8_1:65772006-65772025 None:intergenic 30.0%
TGTAAACAATGTTAGTCATG+AGG - chr8_1:65772288-65772307 None:intergenic 30.0%
ACCATTTGTGTATATCTAGT+TGG + chr8_1:65772391-65772410 Msa1207920:intron 30.0%
CCATTTGTGTATATCTAGTT+GGG + chr8_1:65772392-65772411 Msa1207920:intron 30.0%
TCTTGAATTGTATTGTTCCT+TGG + chr8_1:65772464-65772483 Msa1207920:intron 30.0%
AAAAATCGTATGAACAAGGA+TGG + chr8_1:65772493-65772512 Msa1207920:CDS 30.0%
AAAATCGTATGAACAAGGAT+GGG + chr8_1:65772494-65772513 Msa1207920:CDS 30.0%
!!! AAACTTCTGTGTTCTAGTTT+TGG - chr8_1:65772539-65772558 None:intergenic 30.0%
TGAAGAAAAATCGCAGAATA+AGG - chr8_1:65772622-65772641 None:intergenic 30.0%
! TTATTCTGCGATTTTTCTTC+AGG + chr8_1:65772621-65772640 Msa1207920:intron 30.0%
! TATTCTGCGATTTTTCTTCA+GGG + chr8_1:65772622-65772641 Msa1207920:intron 30.0%
!! TCTTGATAGTGAACAAACTA+GGG + chr8_1:65773058-65773077 Msa1207920:intron 30.0%
! CATTCATTTTCTTCATTCTC+AGG + chr8_1:65773114-65773133 Msa1207920:intron 30.0%
!!! ACTATTTTTATGATTCTCCG+AGG + chr8_1:65773179-65773198 Msa1207920:intron 30.0%
TATTAAAGGACTTCGCAAAT+TGG + chr8_1:65773242-65773261 Msa1207920:intron 30.0%
AAGTCCATAGTCTACTTATT+TGG + chr8_1:65773362-65773381 Msa1207920:intron 30.0%
! TTTTCCTTCTCTTTAATCCT+TGG - chr8_1:65773394-65773413 None:intergenic 30.0%
AGGATTAAAGAGAAGGAAAA+TGG + chr8_1:65773394-65773413 Msa1207920:intron 30.0%
GGATTAAAGAGAAGGAAAAT+GGG + chr8_1:65773395-65773414 Msa1207920:intron 30.0%
GATTAAAGAGAAGGAAAATG+GGG + chr8_1:65773396-65773415 Msa1207920:intron 30.0%
AATGGATCTTATATTAAGGG+GGG - chr8_1:65773570-65773589 None:intergenic 30.0%
AACACTTTCTTACCATAAAG+GGG - chr8_1:65773617-65773636 None:intergenic 30.0%
CAACACTTTCTTACCATAAA+GGG - chr8_1:65773618-65773637 None:intergenic 30.0%
TCAACACTTTCTTACCATAA+AGG - chr8_1:65773619-65773638 None:intergenic 30.0%
ATTATAACTTCAAAGGGAAG+AGG - chr8_1:65773662-65773681 None:intergenic 30.0%
CTAAGTCTGTGTAATTGAAA+AGG - chr8_1:65773778-65773797 None:intergenic 30.0%
! GTGCTTTTCTGTTTATGAAA+TGG + chr8_1:65773834-65773853 Msa1207920:intron 30.0%
! GCTTTTCTGTTTATGAAATG+GGG + chr8_1:65773836-65773855 Msa1207920:intron 30.0%
TGTTAGCATTAGAATTACCA+AGG + chr8_1:65774030-65774049 Msa1207920:intron 30.0%
GTTAGCATTAGAATTACCAA+GGG + chr8_1:65774031-65774050 Msa1207920:intron 30.0%
CTTAGTAAGTTCGTGATTAT+TGG + chr8_1:65774211-65774230 Msa1207920:intron 30.0%
!! AATGTGTTACTTGAATCTCT+TGG + chr8_1:65774295-65774314 Msa1207920:intron 30.0%
ATTGGTTGAAGATATAACCA+AGG + chr8_1:65774395-65774414 Msa1207920:three_prime_UTR 30.0%
!! AACATGTCCATTTTTGTACT+TGG + chr8_1:65774634-65774653 Msa1207920:three_prime_UTR 30.0%
!! ACATGTCCATTTTTGTACTT+GGG + chr8_1:65774635-65774654 Msa1207920:three_prime_UTR 30.0%
CTATCAGAAACTAAATCACA+AGG - chr8_1:65774674-65774693 None:intergenic 30.0%
ATAGTAAAGCAATGTACTAC+TGG - chr8_1:65774714-65774733 None:intergenic 30.0%
AATGTTACCTTCACTTGATA+AGG + chr8_1:65774744-65774763 Msa1207920:three_prime_UTR 30.0%
ATGTTACCTTCACTTGATAA+GGG + chr8_1:65774745-65774764 Msa1207920:three_prime_UTR 30.0%
CAAAACTTGGATGTATGGTA+TGG + chr8_1:65769035-65769054 Msa1207920:exon 35.0%
TATTCCTTTCACCATTCTAG+TGG - chr8_1:65769070-65769089 None:intergenic 35.0%
TAATGCGAAGAAGAGAAGAA+GGG - chr8_1:65769119-65769138 None:intergenic 35.0%
!! CAAAGTGATTTTAGGAATGG+GGG - chr8_1:65769328-65769347 None:intergenic 35.0%
!! CCAAAGTGATTTTAGGAATG+GGG - chr8_1:65769329-65769348 None:intergenic 35.0%
!! CCCAAAGTGATTTTAGGAAT+GGG - chr8_1:65769330-65769349 None:intergenic 35.0%
CCCATTCCTAAAATCACTTT+GGG + chr8_1:65769327-65769346 Msa1207920:CDS 35.0%
!! ACCCAAAGTGATTTTAGGAA+TGG - chr8_1:65769331-65769350 None:intergenic 35.0%
! AACAGACCCAAAGTGATTTT+AGG - chr8_1:65769336-65769355 None:intergenic 35.0%
TAAGGAAATCAACATGGGAA+AGG + chr8_1:65769713-65769732 Msa1207920:intron 35.0%
ATCAACATGGGAAAGGATTA+AGG + chr8_1:65769720-65769739 Msa1207920:intron 35.0%
GAAGGTAATTGCTAAGAAAG+AGG - chr8_1:65769922-65769941 None:intergenic 35.0%
TTTGTAGAGTAACAAAGTGG+TGG - chr8_1:65770044-65770063 None:intergenic 35.0%
! AATAAAGTACTCCAACTACC+AGG + chr8_1:65770126-65770145 Msa1207920:intron 35.0%
! TTTATCCCTCCAAGACTTTT+CGG + chr8_1:65770200-65770219 Msa1207920:intron 35.0%
TTTCTTAGTCCGAAAAGTCT+TGG - chr8_1:65770212-65770231 None:intergenic 35.0%
GCATTTGTAGAGAAACAAAG+TGG + chr8_1:65770390-65770409 Msa1207920:intron 35.0%
GCTAGAAGATTATAAAAGCC+TGG + chr8_1:65770668-65770687 Msa1207920:intron 35.0%
AAGATTATAAAAGCCTGGCA+TGG + chr8_1:65770673-65770692 Msa1207920:intron 35.0%
GGCGTTATACTTTGTCATTA+AGG + chr8_1:65770694-65770713 Msa1207920:intron 35.0%
TAAGAAAATCAACATGGGCA+AGG - chr8_1:65770762-65770781 None:intergenic 35.0%
GAATACATAAGTAAAGGAGG+AGG - chr8_1:65770840-65770859 None:intergenic 35.0%
!!! GGAGTGACTTGCTTTTTTAT+AGG - chr8_1:65770873-65770892 None:intergenic 35.0%
!! GTACTGGTATAAGCATTTTG+TGG + chr8_1:65770981-65771000 Msa1207920:intron 35.0%
! AAGCATTTTGTGGTACTACT+TGG + chr8_1:65770991-65771010 Msa1207920:intron 35.0%
TTGTAGGATTATGGCCTATT+TGG - chr8_1:65771208-65771227 None:intergenic 35.0%
TATATCCATGTTGGGATCAT+TGG + chr8_1:65771307-65771326 Msa1207920:intron 35.0%
!! ATTTTGGAGAGTTCTCTCTT+TGG + chr8_1:65771505-65771524 Msa1207920:intron 35.0%
! TTTGTTTCTCCAGCATTGTA+AGG + chr8_1:65771583-65771602 Msa1207920:intron 35.0%
! TTGTTTCTCCAGCATTGTAA+GGG + chr8_1:65771584-65771603 Msa1207920:intron 35.0%
AGTTATTAACTGCAAGTGGA+TGG - chr8_1:65771619-65771638 None:intergenic 35.0%
!! TGATTTGGTAGTGATGAGAA+AGG - chr8_1:65771769-65771788 None:intergenic 35.0%
!!! GCTTTTGAAATGTTGAGTCA+TGG + chr8_1:65771834-65771853 Msa1207920:intron 35.0%
!!! GAGTATTTTAGGTTTGAAGC+AGG - chr8_1:65771952-65771971 None:intergenic 35.0%
!!! AGCTCAAGCAAGAGTATTTT+AGG - chr8_1:65771963-65771982 None:intergenic 35.0%
CCCAACTAGATATACACAAA+TGG - chr8_1:65772395-65772414 None:intergenic 35.0%
GGAGAAAAATCGTATGAACA+AGG + chr8_1:65772489-65772508 Msa1207920:intron 35.0%
AAATCGTATGAACAAGGATG+GGG + chr8_1:65772495-65772514 Msa1207920:CDS 35.0%
! ATTCTGCGATTTTTCTTCAG+GGG + chr8_1:65772623-65772642 Msa1207920:intron 35.0%
CTGTAACAGTTATCATTGCT+TGG + chr8_1:65772792-65772811 Msa1207920:intron 35.0%
AACAGTTATCATTGCTTGGT+AGG + chr8_1:65772796-65772815 Msa1207920:intron 35.0%
GAAAGAATAATGTCTCTGGT+AGG - chr8_1:65772863-65772882 None:intergenic 35.0%
TTGGGAAAGAATAATGTCTC+TGG - chr8_1:65772867-65772886 None:intergenic 35.0%
!! TACTTATTTTTCTCTGGTGG+TGG + chr8_1:65772984-65773003 Msa1207920:intron 35.0%
! AGTTTGTTCACTATCAAGAC+AGG - chr8_1:65773057-65773076 None:intergenic 35.0%
!! GTCTTGATAGTGAACAAACT+AGG + chr8_1:65773057-65773076 Msa1207920:intron 35.0%
!! CTTGATAGTGAACAAACTAG+GGG + chr8_1:65773059-65773078 Msa1207920:intron 35.0%
!! TTGATAGTGAACAAACTAGG+GGG + chr8_1:65773060-65773079 Msa1207920:intron 35.0%
TATTATAACTTCCTCGTCCT+CGG - chr8_1:65773199-65773218 None:intergenic 35.0%
!!! TATTCCTTTTGCTGTTGAGT+TGG + chr8_1:65773307-65773326 Msa1207920:intron 35.0%
GGTTCCAAATAAGTAGACTA+TGG - chr8_1:65773369-65773388 None:intergenic 35.0%
! TACTTATTTGGAACCATCCA+AGG + chr8_1:65773374-65773393 Msa1207920:intron 35.0%
!!! CTGTTGTCTCAGTTTTATTG+TGG + chr8_1:65773427-65773446 Msa1207920:intron 35.0%
! GTTGATACGACTTTTCTTTG+AGG - chr8_1:65773503-65773522 None:intergenic 35.0%
TTTCAACAACCCTCTCTTAT+TGG + chr8_1:65773537-65773556 Msa1207920:intron 35.0%
TTCAACAACCCTCTCTTATT+GGG + chr8_1:65773538-65773557 Msa1207920:intron 35.0%
! TCACATGAAACTTCTGGAAA+TGG - chr8_1:65773588-65773607 None:intergenic 35.0%
TGGAATTCACATGAAACTTC+TGG - chr8_1:65773594-65773613 None:intergenic 35.0%
AAAGGAATTAAGGGGAAGAA+AGG - chr8_1:65773760-65773779 None:intergenic 35.0%
! TTCTTCTTTTGCTCTTCTGA+GGG - chr8_1:65773907-65773926 None:intergenic 35.0%
! TTTCTTCTTTTGCTCTTCTG+AGG - chr8_1:65773908-65773927 None:intergenic 35.0%
ATCAAATGTGCACTTCTGTA+GGG + chr8_1:65774063-65774082 Msa1207920:intron 35.0%
ACATCATGACATCAGATGAT+TGG + chr8_1:65774377-65774396 Msa1207920:three_prime_UTR 35.0%
AACATGAAGGATATCCAAAG+TGG + chr8_1:65774436-65774455 Msa1207920:three_prime_UTR 35.0%
ATGCAGCAATAAAACCACTT+TGG - chr8_1:65774453-65774472 None:intergenic 35.0%
!! GTTTTATTGCTGCATAGTGT+TGG + chr8_1:65774458-65774477 Msa1207920:three_prime_UTR 35.0%
!! AGTGTTGGTCAAATTTGTGA+TGG + chr8_1:65774473-65774492 Msa1207920:three_prime_UTR 35.0%
GAGCTACGATTTAATGCAAT+AGG + chr8_1:65774495-65774514 Msa1207920:three_prime_UTR 35.0%
GAATTCGACATGTGTCTTTA+CGG + chr8_1:65774592-65774611 Msa1207920:three_prime_UTR 35.0%
AATTCGACATGTGTCTTTAC+GGG + chr8_1:65774593-65774612 Msa1207920:three_prime_UTR 35.0%
AAAAATGGACATGTTACCCA+GGG - chr8_1:65774629-65774648 None:intergenic 35.0%
AAGCAATGTACTACTGGAAT+TGG - chr8_1:65774708-65774727 None:intergenic 35.0%
ACAACCACTAGAATGGTGAA+AGG + chr8_1:65769063-65769082 Msa1207920:CDS 40.0%
AATGCGAAGAAGAGAAGAAG+GGG - chr8_1:65769118-65769137 None:intergenic 40.0%
GTAATGCGAAGAAGAGAAGA+AGG - chr8_1:65769120-65769139 None:intergenic 40.0%
! GGAACAACAAAGTATCCTCT+CGG + chr8_1:65769238-65769257 Msa1207920:CDS 40.0%
CCCCATTCCTAAAATCACTT+TGG + chr8_1:65769326-65769345 Msa1207920:CDS 40.0%
! ACTGTGAATTTTGCCAGAAG+TGG + chr8_1:65769505-65769524 Msa1207920:CDS 40.0%
TGATATAAGGGAGGCAATGT+TGG - chr8_1:65769808-65769827 None:intergenic 40.0%
GAAGATGCTTGATATAAGGG+AGG - chr8_1:65769817-65769836 None:intergenic 40.0%
! ATCTGCAACTTGTTCTTCAG+CGG + chr8_1:65769878-65769897 Msa1207920:intron 40.0%
GGTAATTGCTAAGAAAGAGG+TGG - chr8_1:65769919-65769938 None:intergenic 40.0%
ATACACGATGTCTCAACAGA+AGG - chr8_1:65769940-65769959 None:intergenic 40.0%
AAATAGCAACACCTGGTAGT+TGG - chr8_1:65770140-65770159 None:intergenic 40.0%
TCAGTTGAAATAGCAACACC+TGG - chr8_1:65770147-65770166 None:intergenic 40.0%
TTAGTCCGAAAAGTCTTGGA+GGG - chr8_1:65770208-65770227 None:intergenic 40.0%
GTTGAAATACCAACACCTTG+TGG + chr8_1:65770265-65770284 Msa1207920:intron 40.0%
! ATAAAGTACCTGCAACCACA+AGG - chr8_1:65770283-65770302 None:intergenic 40.0%
! AAGAAGATGTTTGGGATGAC+AGG + chr8_1:65770605-65770624 Msa1207920:intron 40.0%
! TAAGAACGGTGGCTTCATTT+TGG - chr8_1:65770736-65770755 None:intergenic 40.0%
CATGGGCAAGGATTTAAGAA+CGG - chr8_1:65770750-65770769 None:intergenic 40.0%
ATACAGGGTCTAAACACATG+TGG - chr8_1:65771240-65771259 None:intergenic 40.0%
TTCCCTATTCAGGCTCTATT+GGG - chr8_1:65771384-65771403 None:intergenic 40.0%
TTTCCCTATTCAGGCTCTAT+TGG - chr8_1:65771385-65771404 None:intergenic 40.0%
TAGAGCCTGAATAGGGAAAT+AGG + chr8_1:65771386-65771405 Msa1207920:intron 40.0%
TCGTTCCTATTTCCCTATTC+AGG - chr8_1:65771394-65771413 None:intergenic 40.0%
ATGAACTCCTAACCAAAGCT+AGG - chr8_1:65771539-65771558 None:intergenic 40.0%
GTTAGGAGTTCATAGAACTC+TGG + chr8_1:65771546-65771565 Msa1207920:intron 40.0%
ACTTAATGCCCTTACAATGC+TGG - chr8_1:65771595-65771614 None:intergenic 40.0%
TGATTGTACAGTGAACACCA+AGG + chr8_1:65771656-65771675 Msa1207920:intron 40.0%
! TCAATGTTGGAAAGGCACAT+TGG + chr8_1:65771691-65771710 Msa1207920:CDS 40.0%
CAGGGAGAAGATTATGCAAA+TGG + chr8_1:65771728-65771747 Msa1207920:CDS 40.0%
!!! TTTTAGGTTTGAAGCAGGGA+TGG - chr8_1:65771947-65771966 None:intergenic 40.0%
ATGGATGGACCTCATAAGAA+CGG + chr8_1:65772084-65772103 Msa1207920:intron 40.0%
ATACATGCACCGTTCTTATG+AGG - chr8_1:65772096-65772115 None:intergenic 40.0%
ATGGCAACCGTACAAAGTTA+AGG - chr8_1:65772315-65772334 None:intergenic 40.0%
GAATTGTATTGTTCCTTGGC+AGG + chr8_1:65772468-65772487 Msa1207920:intron 40.0%
! ATACGATTTTTCTCCTGCCA+AGG - chr8_1:65772484-65772503 None:intergenic 40.0%
! TTGTATGCTGGCTGTAAGAT+TGG + chr8_1:65772596-65772615 Msa1207920:intron 40.0%
TTTCTTCAGGGGTAACATTG+AGG + chr8_1:65772634-65772653 Msa1207920:intron 40.0%
ACTTCAGTGAGACCTAAGAA+TGG + chr8_1:65772766-65772785 Msa1207920:intron 40.0%
CTTCAGTGAGACCTAAGAAT+GGG + chr8_1:65772767-65772786 Msa1207920:intron 40.0%
CTGTTACAGAACCCATTCTT+AGG - chr8_1:65772781-65772800 None:intergenic 40.0%
GTTATAAAGACAGTAGGACG+CGG - chr8_1:65773340-65773359 None:intergenic 40.0%
CCTTCTCTTTAATCCTTGGA+TGG - chr8_1:65773390-65773409 None:intergenic 40.0%
CCATCCAAGGATTAAAGAGA+AGG + chr8_1:65773387-65773406 Msa1207920:intron 40.0%
GGAATTCACCCAATAAGAGA+GGG - chr8_1:65773549-65773568 None:intergenic 40.0%
ATGTGAATTCCACCCCTTTA+TGG + chr8_1:65773602-65773621 Msa1207920:intron 40.0%
ACTTTCTTACCATAAAGGGG+TGG - chr8_1:65773614-65773633 None:intergenic 40.0%
!! AAAGTGTTGAGAGTGAGTGT+CGG + chr8_1:65773629-65773648 Msa1207920:intron 40.0%
CGACATGTCATATCCTAGAA+GGG - chr8_1:65773709-65773728 None:intergenic 40.0%
ACGACATGTCATATCCTAGA+AGG - chr8_1:65773710-65773729 None:intergenic 40.0%
! ATTTGATGGTTACAAGCCCT+TGG - chr8_1:65774050-65774069 None:intergenic 40.0%
! CTACAGAAGTGCACATTTGA+TGG - chr8_1:65774064-65774083 None:intergenic 40.0%
CATCAAATGTGCACTTCTGT+AGG + chr8_1:65774062-65774081 Msa1207920:intron 40.0%
CAAACGTCTCAAAAGCAAGA+AGG + chr8_1:65774102-65774121 Msa1207920:CDS 40.0%
CAAAAATGGACATGTTACCC+AGG - chr8_1:65774630-65774649 None:intergenic 40.0%
CCTTCTCCCAAGTACAAAAA+TGG - chr8_1:65774644-65774663 None:intergenic 40.0%
!! CCATTTTTGTACTTGGGAGA+AGG + chr8_1:65774641-65774660 Msa1207920:three_prime_UTR 40.0%
! TTTTGTACTTGGGAGAAGGT+TGG + chr8_1:65774645-65774664 Msa1207920:three_prime_UTR 40.0%
TTTGTACTTGGGAGAAGGTT+GGG + chr8_1:65774646-65774665 Msa1207920:three_prime_UTR 40.0%
ACCTTCACTTGATAAGGGTT+TGG + chr8_1:65774750-65774769 Msa1207920:three_prime_UTR 40.0%
!! GGTTTGGCATTTGCTTTTGA+TGG + chr8_1:65774766-65774785 Msa1207920:three_prime_UTR 40.0%
!! GGCATTTGCTTTTGATGGTA+TGG + chr8_1:65774771-65774790 Msa1207920:three_prime_UTR 40.0%
!!! GAAAGAGGGTTTTGGGATTG+TGG + chr8_1:65768993-65769012 Msa1207920:five_prime_UTR 45.0%
GGCTTCAACAACCACTAGAA+TGG + chr8_1:65769056-65769075 Msa1207920:CDS 45.0%
ATGCGAAGAAGAGAAGAAGG+GGG - chr8_1:65769117-65769136 None:intergenic 45.0%
GAAGAGAGGAGAGGAAGAAA+GGG - chr8_1:65769158-65769177 None:intergenic 45.0%
TGAAGAGAGGAGAGGAAGAA+AGG - chr8_1:65769159-65769178 None:intergenic 45.0%
GCTGTAATTGAAGAGAGGAG+AGG - chr8_1:65769167-65769186 None:intergenic 45.0%
CTTCCTCAGCTTCAGATTCT+GGG + chr8_1:65769217-65769236 Msa1207920:CDS 45.0%
TAGATCGATGTTCGGCTTCT+TGG - chr8_1:65769287-65769306 None:intergenic 45.0%
AGCGGAGATAGATCGATGTT+CGG - chr8_1:65769295-65769314 None:intergenic 45.0%
! GTGAATTTTGCCAGAAGTGG+AGG + chr8_1:65769508-65769527 Msa1207920:CDS 45.0%
TTATTGACATTCTGACCCCC+AGG - chr8_1:65769535-65769554 None:intergenic 45.0%
GGGGGTCAGAATGTCAATAA+AGG + chr8_1:65769535-65769554 Msa1207920:CDS 45.0%
! TCTGCAACTTGTTCTTCAGC+GGG + chr8_1:65769879-65769898 Msa1207920:intron 45.0%
CAAAGAAGTTTGTACCGTCG+AGG + chr8_1:65769981-65770000 Msa1207920:intron 45.0%
! TTGTACCGTCGAGGTATTCT+TGG + chr8_1:65769990-65770009 Msa1207920:intron 45.0%
AGAGTCCAAGAATACCTCGA+CGG - chr8_1:65769998-65770017 None:intergenic 45.0%
CTTAGTCCGAAAAGTCTTGG+AGG - chr8_1:65770209-65770228 None:intergenic 45.0%
! GATGTTTGGGATGACAGGTT+TGG + chr8_1:65770610-65770629 Msa1207920:intron 45.0%
ACAAAGTATAACGCCATGCC+AGG - chr8_1:65770689-65770708 None:intergenic 45.0%
CCATACCAATGATCCCAACA+TGG - chr8_1:65771315-65771334 None:intergenic 45.0%
CCATGTTGGGATCATTGGTA+TGG + chr8_1:65771312-65771331 Msa1207920:intron 45.0%
AAGCCCAATAGAGCCTGAAT+AGG + chr8_1:65771378-65771397 Msa1207920:intron 45.0%
AGCCCAATAGAGCCTGAATA+GGG + chr8_1:65771379-65771398 Msa1207920:intron 45.0%
ATAGGGAAATAGGAACGACG+CGG + chr8_1:65771396-65771415 Msa1207920:intron 45.0%
GAGCGGTATTCTGTTAGGAT+GGG + chr8_1:65771418-65771437 Msa1207920:intron 45.0%
TTGGATAGAGAGCCTAGCTT+TGG + chr8_1:65771524-65771543 Msa1207920:intron 45.0%
!! TAGAGAGCCTAGCTTTGGTT+AGG + chr8_1:65771529-65771548 Msa1207920:intron 45.0%
GTGTTCACTGTACAATCAGC+AGG - chr8_1:65771654-65771673 None:intergenic 45.0%
CATGCGGTTCAATGTTGGAA+AGG + chr8_1:65771683-65771702 Msa1207920:CDS 45.0%
! AGGCACATTGGCTAAGTGAA+AGG + chr8_1:65771703-65771722 Msa1207920:CDS 45.0%
! GGCACATTGGCTAAGTGAAA+GGG + chr8_1:65771704-65771723 Msa1207920:CDS 45.0%
ATTGGCTAAGTGAAAGGGTC+AGG + chr8_1:65771709-65771728 Msa1207920:CDS 45.0%
TTGGCTAAGTGAAAGGGTCA+GGG + chr8_1:65771710-65771729 Msa1207920:CDS 45.0%
! GCTAATAGGGACTTTTCCGT+AGG + chr8_1:65772189-65772208 Msa1207920:intron 45.0%
GGGACGAGCTTCTAACTTAT+AGG - chr8_1:65772249-65772268 None:intergenic 45.0%
AGTTAGAAGCTCGTCCCAAT+TGG + chr8_1:65772252-65772271 Msa1207920:intron 45.0%
GTTAGAAGCTCGTCCCAATT+GGG + chr8_1:65772253-65772272 Msa1207920:intron 45.0%
GGGTAACATTGAGGATGCTT+TGG + chr8_1:65772643-65772662 Msa1207920:CDS 45.0%
!!! ATTTTTCTCTGGTGGTGGTG+AGG + chr8_1:65772989-65773008 Msa1207920:intron 45.0%
TTTATGATTCTCCGAGGACG+AGG + chr8_1:65773185-65773204 Msa1207920:intron 45.0%
!!! TCCTTTTGCTGTTGAGTTGG+TGG + chr8_1:65773310-65773329 Msa1207920:intron 45.0%
TCCACCAACTCAACAGCAAA+AGG - chr8_1:65773314-65773333 None:intergenic 45.0%
AAGAGAAGGAAAATGGGGTG+TGG + chr8_1:65773401-65773420 Msa1207920:intron 45.0%
GGGAATTCACCCAATAAGAG+AGG - chr8_1:65773550-65773569 None:intergenic 45.0%
! CTTTGTGGTTAGTCCCTTCT+AGG + chr8_1:65773693-65773712 Msa1207920:intron 45.0%
!! TTCTTTTGCTCTTCTGAGGG+AGG - chr8_1:65773904-65773923 None:intergenic 45.0%
ATGTCGAATTCCCGTAATCG+CGG - chr8_1:65774583-65774602 None:intergenic 45.0%
GCCAAACCCTTATCAAGTGA+AGG - chr8_1:65774754-65774773 None:intergenic 45.0%
!! TATATATATATATATATTCA+AGG - chr8_1:65769382-65769401 None:intergenic 5.0%
!! AAGAGAAGAAGGGGGTGTTG+AGG - chr8_1:65769109-65769128 None:intergenic 50.0%
AGAGGAAGAAAGGGCGAGAA+AGG - chr8_1:65769149-65769168 None:intergenic 50.0%
! CGAGCGCTGTAATTGAAGAG+AGG - chr8_1:65769172-65769191 None:intergenic 50.0%
GCTTCCTCAGCTTCAGATTC+TGG + chr8_1:65769216-65769235 Msa1207920:CDS 50.0%
! GTTCCCAGAATCTGAAGCTG+AGG - chr8_1:65769223-65769242 None:intergenic 50.0%
!! AATGGGGGCGTTGTAATCAG+CGG - chr8_1:65769313-65769332 None:intergenic 50.0%
TCAGGTAAAAGCTACGGTCC+AGG - chr8_1:65769777-65769796 None:intergenic 50.0%
TACCAACACCTTGTGGTTGC+AGG + chr8_1:65770272-65770291 Msa1207920:intron 50.0%
TACCTGCAACCACAAGGTGT+TGG - chr8_1:65770277-65770296 None:intergenic 50.0%
AGAGGGCAAGAATATCTCGC+TGG + chr8_1:65770441-65770460 Msa1207920:intron 50.0%
GGGCAAGGATTTAAGAACGG+TGG - chr8_1:65770747-65770766 None:intergenic 50.0%
GTGTAGCAGAGAGGTAACAG+AGG - chr8_1:65770894-65770913 None:intergenic 50.0%
TCACTCACTGTGTAGCAGAG+AGG - chr8_1:65770903-65770922 None:intergenic 50.0%
GGAGCGGTATTCTGTTAGGA+TGG + chr8_1:65771417-65771436 Msa1207920:intron 50.0%
TGAACACCAAGGTCGACATG+CGG + chr8_1:65771667-65771686 Msa1207920:CDS 50.0%
ATTGAACCGCATGTCGACCT+TGG - chr8_1:65771676-65771695 None:intergenic 50.0%
GTCGACATGCGGTTCAATGT+TGG + chr8_1:65771678-65771697 Msa1207920:CDS 50.0%
GTTGAGTCATGGCGTAGTAG+AGG + chr8_1:65771845-65771864 Msa1207920:intron 50.0%
GGATGCTTTGGCAAAGCTTC+AGG + chr8_1:65772655-65772674 Msa1207920:CDS 50.0%
CTAGGGGGAAATTGCAGCTT+AGG + chr8_1:65773075-65773094 Msa1207920:intron 50.0%
!! TTTTGCTCTTCTGAGGGAGG+TGG - chr8_1:65773901-65773920 None:intergenic 50.0%
GAGACGTTTGTGCTCTCCTA+TGG - chr8_1:65774092-65774111 None:intergenic 50.0%
AATCGCGGCTTAAGCTGACA+AGG - chr8_1:65774568-65774587 None:intergenic 50.0%
GTCAGCTTAAGCCGCGATTA+CGG + chr8_1:65774569-65774588 Msa1207920:three_prime_UTR 50.0%
TCAGCTTAAGCCGCGATTAC+GGG + chr8_1:65774570-65774589 Msa1207920:three_prime_UTR 50.0%
TTACGGGAAGTCAACAACCC+TGG + chr8_1:65774609-65774628 Msa1207920:three_prime_UTR 50.0%
TACGGGAAGTCAACAACCCT+GGG + chr8_1:65774610-65774629 Msa1207920:three_prime_UTR 50.0%
!!! GGGTTTTGGGATTGTGGACG+TGG + chr8_1:65768999-65769018 Msa1207920:five_prime_UTR 55.0%
!! AAGAAGGGGGTGTTGAGGAG+AGG - chr8_1:65769104-65769123 None:intergenic 55.0%
AGCGCATCGAATTGCAGTGG+CGG - chr8_1:65769199-65769218 None:intergenic 55.0%
! GGAAGCGCATCGAATTGCAG+TGG - chr8_1:65769202-65769221 None:intergenic 55.0%
AGTATCCTCTCGGCTTTCGC+AGG + chr8_1:65769248-65769267 Msa1207920:CDS 55.0%
CGGCTTCTTGGAGAAGCTCA+TGG - chr8_1:65769275-65769294 None:intergenic 55.0%
TTTGCCAGAAGTGGAGGACC+TGG + chr8_1:65769514-65769533 Msa1207920:CDS 55.0%
TTGCCAGAAGTGGAGGACCT+GGG + chr8_1:65769515-65769534 Msa1207920:CDS 55.0%
GGATGACAGGTTTGGCAGCT+TGG + chr8_1:65770618-65770637 Msa1207920:intron 55.0%
GAAATAGGAACGACGCGGAG+CGG + chr8_1:65771401-65771420 Msa1207920:intron 55.0%
ACGCGGAGCGGTATTCTGTT+AGG + chr8_1:65771413-65771432 Msa1207920:intron 55.0%
GAGGCAACTGCAGCCCAATT+GGG - chr8_1:65772269-65772288 None:intergenic 55.0%
TGAGGCAACTGCAGCCCAAT+TGG - chr8_1:65772270-65772289 None:intergenic 55.0%
!! TTCTCTGGTGGTGGTGAGGT+TGG + chr8_1:65772993-65773012 Msa1207920:intron 55.0%
!! TCTCTGGTGGTGGTGAGGTT+GGG + chr8_1:65772994-65773013 Msa1207920:intron 55.0%
CACTTCTGTAGGGCTGCCAT+AGG + chr8_1:65774073-65774092 Msa1207920:intron 55.0%
GCGCATCGAATTGCAGTGGC+GGG - chr8_1:65769198-65769217 None:intergenic 60.0%
ATGGACCTGCGAAAGCCGAG+AGG - chr8_1:65769256-65769275 None:intergenic 60.0%
TGCCAGAAGTGGAGGACCTG+GGG + chr8_1:65769516-65769535 Msa1207920:CDS 60.0%
! GCTCTTCTGAGGGAGGTGGT+GGG - chr8_1:65773897-65773916 None:intergenic 60.0%
! TGCTCTTCTGAGGGAGGTGG+TGG - chr8_1:65773898-65773917 None:intergenic 60.0%
GCCAGAAGTGGAGGACCTGG+GGG + chr8_1:65769517-65769536 Msa1207920:CDS 65.0%
ACCCCCAGGTCCTCCACTTC+TGG - chr8_1:65769521-65769540 None:intergenic 65.0%
!! CTGGTGGTGGTGAGGTTGGG+AGG + chr8_1:65772997-65773016 Msa1207920:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 65768961 65774899 65768961 ID=Msa1207920;Name=Msa1207920
chr8_1 mRNA 65768961 65774899 65768961 ID=Msa1207920-mRNA-1;Parent=Msa1207920;Name=Msa1207920-mRNA-1;_AED=0.25;_eAED=0.25;_QI=84|1|1|1|0.85|0.75|8|616|235
chr8_1 exon 65768961 65769348 65768961 ID=Msa1207920-mRNA-1:exon:21573;Parent=Msa1207920-mRNA-1
chr8_1 exon 65769497 65769556 65769497 ID=Msa1207920-mRNA-1:exon:21574;Parent=Msa1207920-mRNA-1
chr8_1 exon 65771667 65771749 65771667 ID=Msa1207920-mRNA-1:exon:21575;Parent=Msa1207920-mRNA-1
chr8_1 exon 65772490 65772554 65772490 ID=Msa1207920-mRNA-1:exon:21576;Parent=Msa1207920-mRNA-1
chr8_1 exon 65772643 65772676 65772643 ID=Msa1207920-mRNA-1:exon:21577;Parent=Msa1207920-mRNA-1
chr8_1 exon 65773868 65773938 65773868 ID=Msa1207920-mRNA-1:exon:21578;Parent=Msa1207920-mRNA-1
chr8_1 exon 65774084 65774214 65774084 ID=Msa1207920-mRNA-1:exon:21579;Parent=Msa1207920-mRNA-1
chr8_1 exon 65774324 65774899 65774324 ID=Msa1207920-mRNA-1:exon:21580;Parent=Msa1207920-mRNA-1
chr8_1 five_prime_UTR 65768961 65769044 65768961 ID=Msa1207920-mRNA-1:five_prime_utr;Parent=Msa1207920-mRNA-1
chr8_1 CDS 65769045 65769348 65769045 ID=Msa1207920-mRNA-1:cds;Parent=Msa1207920-mRNA-1
chr8_1 CDS 65769497 65769556 65769497 ID=Msa1207920-mRNA-1:cds;Parent=Msa1207920-mRNA-1
chr8_1 CDS 65771667 65771749 65771667 ID=Msa1207920-mRNA-1:cds;Parent=Msa1207920-mRNA-1
chr8_1 CDS 65772490 65772554 65772490 ID=Msa1207920-mRNA-1:cds;Parent=Msa1207920-mRNA-1
chr8_1 CDS 65772643 65772676 65772643 ID=Msa1207920-mRNA-1:cds;Parent=Msa1207920-mRNA-1
chr8_1 CDS 65773868 65773938 65773868 ID=Msa1207920-mRNA-1:cds;Parent=Msa1207920-mRNA-1
chr8_1 CDS 65774084 65774174 65774084 ID=Msa1207920-mRNA-1:cds;Parent=Msa1207920-mRNA-1
chr8_1 three_prime_UTR 65774175 65774214 65774175 ID=Msa1207920-mRNA-1:three_prime_utr;Parent=Msa1207920-mRNA-1
chr8_1 three_prime_UTR 65774324 65774899 65774324 ID=Msa1207920-mRNA-1:three_prime_utr;Parent=Msa1207920-mRNA-1
Gene Sequence

>Msa1207920

ATGTATGGTATGGCTTCAACAACCACTAGAATGGTGAAAGGAATATTGCTATTACACCTCTCCTCAACACCCCCTTCTTCTCTTCTTCGCATTACTCGCGACCTTTCTCGCCCTTTCTTCCTCTCCTCTCTTCAATTACAGCGCTCGCATCCCGCCACTGCAATTCGATGCGCTTCCTCAGCTTCAGATTCTGGGAACAACAAAGTATCCTCTCGGCTTTCGCAGGTCCATGAGCTTCTCCAAGAAGCCGAACATCGATCTATCTCCGCTGATTACAACGCCCCCATTCCTAAAATCACTTTGGATCATGTTACTGTGAATTTTGCCAGAAGTGGAGGACCTGGGGGTCAGAATGTCAATAAAGTGAACACCAAGGTCGACATGCGGTTCAATGTTGGAAAGGCACATTGGCTAAGTGAAAGGGTCAGGGAGAAGATTATGCAAATGGAGAAAAATCGTATGAACAAGGATGGGGAGCTTGTGATTTCTTCAACCAAAACTAGAACACAGAAGGGTAACATTGAGGATGCTTTGGCAAAGCTTCAGGAAATCATTGATGCAGCATCTTATGTCCCACCACCTCCCTCAGAAGAGCAAAAGAAGAAAATTGCTAAGTTGGCTGCCATAGGAGAGCACAAACGTCTCAAAAGCAAGAAGGTGCAATCAGATAAGAAAGCGCAAAGAAGAAGTAAAAGTAGTTGGGACTAA

Protein sequence

>Msa1207920

MYGMASTTTRMVKGILLLHLSSTPPSSLLRITRDLSRPFFLSSLQLQRSHPATAIRCASSASDSGNNKVSSRLSQVHELLQEAEHRSISADYNAPIPKITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVGKAHWLSERVREKIMQMEKNRMNKDGELVISSTKTRTQKGNIEDALAKLQEIIDAASYVPPPPSEEQKKKIAKLAAIGEHKRLKSKKVQSDKKAQRRSKSSWD*