Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1358040 | XP_003611115.1 | 93.676 | 1091 | 40 | 2 | 1 | 1091 | 1 | 1062 | 0.0 | 2041 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1358040 | G7KDD8 | 93.676 | 1091 | 40 | 2 | 1 | 1091 | 1 | 1062 | 0.0 | 2041 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0102750 | Msa1358040 | 0.802882 | 4.543556e-49 | -8.615850e-47 |
| Msa0105420 | Msa1358040 | 0.814553 | 1.452787e-51 | -8.615850e-47 |
| Msa1358040 | Msa1459180 | 0.822042 | 2.927673e-53 | -8.615850e-47 |
| Msa1358040 | Msa1466460 | 0.825551 | 4.407829e-54 | -8.615850e-47 |
| Msa0647130 | Msa1358040 | 0.808360 | 3.217316e-50 | -8.615850e-47 |
| Msa0753340 | Msa1358040 | 0.920003 | 2.216716e-87 | -8.615850e-47 |
| Msa0795390 | Msa1358040 | 0.836869 | 7.264499e-57 | -8.615850e-47 |
| Msa0810480 | Msa1358040 | 0.801784 | 7.645860e-49 | -8.615850e-47 |
| Msa0832570 | Msa1358040 | 0.993838 | 1.359205e-202 | -8.615850e-47 |
| Msa1269080 | Msa1358040 | 0.803027 | 4.240447e-49 | -8.615850e-47 |
| Msa1278840 | Msa1358040 | 0.802824 | 4.669306e-49 | -8.615850e-47 |
| Msa1318240 | Msa1358040 | 0.805565 | 1.255268e-49 | -8.615850e-47 |
| Msa0993530 | Msa1358040 | 0.818667 | 1.739512e-52 | -8.615850e-47 |
| Msa0316850 | Msa1358040 | 0.801408 | 9.134239e-49 | -8.615850e-47 |
| Msa0317390 | Msa1358040 | 0.800357 | 1.497000e-48 | -8.615850e-47 |
| Msa1185540 | Msa1358040 | 0.814979 | 1.169156e-51 | -8.615850e-47 |
| Msa0881020 | Msa1358040 | 0.811204 | 7.868724e-51 | -8.615850e-47 |
| Msa0881030 | Msa1358040 | 0.803222 | 3.863301e-49 | -8.615850e-47 |
| Msa0893810 | Msa1358040 | 0.801803 | 7.579123e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1358040 | MtrunA17_Chr5g0397721 | 93.676 | 1091 | 40 | 2 | 1 | 1091 | 1 | 1062 | 0.0 | 2041 |
| Msa1358040 | MtrunA17_Chr8g0386571 | 61.767 | 1109 | 332 | 12 | 1 | 1091 | 1 | 1035 | 0.0 | 1253 |
| Msa1358040 | MtrunA17_Chr1g0203361 | 37.018 | 778 | 419 | 16 | 1 | 771 | 1 | 714 | 3.78e-135 | 430 |
| Msa1358040 | MtrunA17_Chr1g0203361 | 70.909 | 55 | 16 | 0 | 1036 | 1090 | 798 | 852 | 9.21e-15 | 79.3 |
| Msa1358040 | MtrunA17_Chr3g0115391 | 25.890 | 730 | 431 | 20 | 1 | 672 | 1 | 678 | 2.58e-46 | 182 |
| Msa1358040 | MtrunA17_Chr1g0179821 | 25.786 | 477 | 274 | 14 | 1 | 437 | 1 | 437 | 1.46e-25 | 114 |
| Msa1358040 | MtrunA17_Chr1g0179821 | 25.092 | 546 | 341 | 16 | 568 | 1087 | 776 | 1279 | 3.86e-11 | 67.8 |
| Msa1358040 | MtrunA17_Chr1g0197491 | 23.060 | 464 | 308 | 14 | 1 | 434 | 25 | 469 | 3.73e-17 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1358040 | AT1G63300.1 | 46.545 | 1100 | 508 | 15 | 1 | 1091 | 1 | 1029 | 0.0 | 835 |
| Msa1358040 | AT5G41140.1 | 44.394 | 1106 | 475 | 21 | 1 | 1090 | 1 | 982 | 0.0 | 772 |
| Msa1358040 | AT5G41140.2 | 44.213 | 1106 | 470 | 21 | 1 | 1090 | 1 | 975 | 0.0 | 766 |
| Msa1358040 | AT5G52280.1 | 36.201 | 895 | 445 | 18 | 1 | 888 | 1 | 776 | 9.30e-137 | 435 |
| Msa1358040 | AT5G52280.1 | 61.905 | 63 | 24 | 0 | 1028 | 1090 | 790 | 852 | 1.04e-13 | 76.3 |
| Msa1358040 | AT1G22060.2 | 25.789 | 729 | 421 | 23 | 1 | 673 | 1 | 665 | 1.53e-41 | 167 |
| Msa1358040 | AT1G22060.1 | 25.789 | 729 | 421 | 23 | 1 | 673 | 1 | 665 | 1.53e-41 | 167 |
Find 216 sgRNAs with CRISPR-Local
Find 312 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTTTCCTTTGACTTTATC+AGG | 0.217694 | tig0016220:+172204 | None:intergenic |
| ATCTTATGTTTCAGATATTA+AGG | 0.227236 | tig0016220:+176484 | None:intergenic |
| CTGTATCGCCGTTGCTGAAT+TGG | 0.249416 | tig0016220:+174908 | None:intergenic |
| CCTCCTCTAATCTTCTGATA+TGG | 0.253588 | tig0016220:+173411 | None:intergenic |
| AATATGTTATTCTTCCTTCT+TGG | 0.272326 | tig0016220:-171311 | Msa1358040:three_prime_UTR |
| CTCAGAGCTCGGGTTAAGTA+TGG | 0.286991 | tig0016220:-174368 | Msa1358040:CDS |
| TCTGCTCCAACATCTCTTCC+AGG | 0.286998 | tig0016220:+173906 | None:intergenic |
| CCAGCATTGAGAAGAGATTC+AGG | 0.288948 | tig0016220:-172515 | Msa1358040:CDS |
| ATGGGTTTCTAGTACCTTAA+TGG | 0.298162 | tig0016220:+173430 | None:intergenic |
| CTCAAACAAGTGTGTCTCTT+TGG | 0.299665 | tig0016220:+173733 | None:intergenic |
| TCTTTATTTCACTCTTTAGC+TGG | 0.301119 | tig0016220:+172556 | None:intergenic |
| TAGTTGGTGGAGTAGTTGTT+TGG | 0.303733 | tig0016220:-176304 | Msa1358040:five_prime_UTR |
| GTTGATACTCCCTGCGAAAT+TGG | 0.316541 | tig0016220:-174535 | Msa1358040:CDS |
| TCCGCGGCACGGGCCATAAC+TGG | 0.317067 | tig0016220:+174469 | None:intergenic |
| TAGTTGACTGAAGCTCTTCT+TGG | 0.317857 | tig0016220:+173108 | None:intergenic |
| CCTTTACAATTTGTTTCCTA+AGG | 0.319699 | tig0016220:+174206 | None:intergenic |
| AGTTGGTGGAGTAGTTGTTT+GGG | 0.320329 | tig0016220:-176303 | Msa1358040:five_prime_UTR |
| CGTTCTGTTGTTTATTGCTT+TGG | 0.325606 | tig0016220:+174606 | None:intergenic |
| AGCTTGGGGAACAAGTTAAT+AGG | 0.327660 | tig0016220:-172965 | Msa1358040:CDS |
| AGATGTTTCGTTCTTCAAAA+TGG | 0.329139 | tig0016220:-176224 | Msa1358040:CDS |
| CTCCTCTAATCTTCTGATAT+GGG | 0.332595 | tig0016220:+173412 | None:intergenic |
| GCAAGAATCAAATGCTGAAT+TGG | 0.334048 | tig0016220:-173945 | Msa1358040:CDS |
| ACGCAAAAGTGATTGTTTAG+AGG | 0.337322 | tig0016220:-171248 | Msa1358040:three_prime_UTR |
| TGTTTAACTGTTCCTGCAAT+TGG | 0.337470 | tig0016220:+173567 | None:intergenic |
| CTCCAAATGGGATGCCTCTT+GGG | 0.337850 | tig0016220:+174300 | None:intergenic |
| TGCCTCTTGGGAACTTTCCT+TGG | 0.342709 | tig0016220:+174312 | None:intergenic |
| GCTTTCTCTAATCTCTTTGT+TGG | 0.351234 | tig0016220:+175619 | None:intergenic |
| TTCGCAATGCTTCCTCGGCT+TGG | 0.354438 | tig0016220:+173306 | None:intergenic |
| TGAAACTCACATTGAGAATC+TGG | 0.362265 | tig0016220:-173501 | Msa1358040:CDS |
| CGAAACAGTCAAGTATTATC+AGG | 0.373302 | tig0016220:-175554 | Msa1358040:CDS |
| TAATAAACTAATGTTTATAA+TGG | 0.380562 | tig0016220:-171337 | Msa1358040:three_prime_UTR |
| AATGGAGGAGTGAGAAGAAT+AGG | 0.381314 | tig0016220:-176206 | Msa1358040:CDS |
| CAAATCTGAACTCGCTGCTT+TGG | 0.381316 | tig0016220:-174266 | Msa1358040:CDS |
| TTCCCAAGAGGCATCCCATT+TGG | 0.381326 | tig0016220:-174302 | Msa1358040:CDS |
| AAACCAGTTTGTTCCAGTTA+TGG | 0.383737 | tig0016220:-174482 | Msa1358040:CDS |
| ATTGAAATAACGTTCGTTGT+TGG | 0.383936 | tig0016220:-176534 | Msa1358040:five_prime_UTR |
| TCGAAAATCAGAAGAAGCTT+GGG | 0.384283 | tig0016220:-172980 | Msa1358040:CDS |
| GCTTGGGGAACAAGTTAATA+GGG | 0.389725 | tig0016220:-172964 | Msa1358040:CDS |
| GAGAAAACTCTCAGCCCTTA+TGG | 0.392278 | tig0016220:+171434 | None:intergenic |
| CAATGCTTCCTCGGCTTGGA+TGG | 0.396921 | tig0016220:+173310 | None:intergenic |
| GAGGCATTAACAGCAGCATT+TGG | 0.397470 | tig0016220:+174442 | None:intergenic |
| TCATTTGCATTGAGAGTCTC+TGG | 0.397576 | tig0016220:+173234 | None:intergenic |
| GTGTAAGAACAGAAGGAGTT+AGG | 0.401792 | tig0016220:+176440 | None:intergenic |
| AGAGTTTCATCTCTAACTCT+TGG | 0.402659 | tig0016220:+173825 | None:intergenic |
| TCCTCATCATTCAAAAGAAA+TGG | 0.405576 | tig0016220:-172421 | Msa1358040:CDS |
| AAATTCTCTAGCTACCATTA+AGG | 0.413944 | tig0016220:-173444 | Msa1358040:CDS |
| TTGTCTGATTTCTTCGACAA+AGG | 0.415014 | tig0016220:+174024 | None:intergenic |
| AGAAGAAGTAAGAAATAGAT+TGG | 0.415538 | tig0016220:-171641 | Msa1358040:CDS |
| TTCCTTCAATGACGACAATT+CGG | 0.418972 | tig0016220:+171585 | None:intergenic |
| TCTCCAAATGGGATGCCTCT+TGG | 0.421036 | tig0016220:+174299 | None:intergenic |
| GACCGAATTGTCGTCATTGA+AGG | 0.423001 | tig0016220:-171587 | Msa1358040:CDS |
| CAGAAGATTAGAGGAGGAGA+TGG | 0.426220 | tig0016220:-173405 | Msa1358040:CDS |
| TATCAAAAGCTAGCGCGGTC+GGG | 0.426391 | tig0016220:-175384 | Msa1358040:CDS |
| AAATTGTCGGTGGGAGAATT+CGG | 0.427835 | tig0016220:-175581 | Msa1358040:CDS |
| CTGTGACCTGTTTCTCACTT+TGG | 0.434319 | tig0016220:+174069 | None:intergenic |
| ATATTTCAGGTGTTACAATC+AGG | 0.434804 | tig0016220:-175688 | Msa1358040:intron |
| GCTAGAGCAAAGCCAATTGC+AGG | 0.435772 | tig0016220:-173579 | Msa1358040:CDS |
| TGAGTCTCTCCATCTCCAAA+TGG | 0.437670 | tig0016220:+174287 | None:intergenic |
| AACCCATATCAGAAGATTAG+AGG | 0.442026 | tig0016220:-173414 | Msa1358040:CDS |
| TTGGGAACTTTCCTTGGAAA+GGG | 0.444214 | tig0016220:+174318 | None:intergenic |
| AGACTATGAGATATTAAAAC+AGG | 0.445367 | tig0016220:-173624 | Msa1358040:CDS |
| CTCATGTCTCTCTTCCCATC+AGG | 0.446018 | tig0016220:-175315 | Msa1358040:CDS |
| CTCGAAAATCAGAAGAAGCT+TGG | 0.447142 | tig0016220:-172981 | Msa1358040:CDS |
| TAGACGCAGTTCACTTGCTT+CGG | 0.447539 | tig0016220:+173166 | None:intergenic |
| CTTGGGAACTTTCCTTGGAA+AGG | 0.451320 | tig0016220:+174317 | None:intergenic |
| GCGGAGATGAACACTCATAT+TGG | 0.455757 | tig0016220:+173543 | None:intergenic |
| ACGATGCCAAAGTGAGAAAC+AGG | 0.457175 | tig0016220:-174075 | Msa1358040:CDS |
| GACACTCTTGAGGTTTCTTA+CGG | 0.459347 | tig0016220:+171456 | None:intergenic |
| AAACCTCAAGAGTGTCCATA+AGG | 0.465783 | tig0016220:-171449 | Msa1358040:CDS |
| GGTCTTTCGCAATGCTTCCT+CGG | 0.468804 | tig0016220:+173301 | None:intergenic |
| CTTTATTTCACTCTTTAGCT+GGG | 0.470948 | tig0016220:+172557 | None:intergenic |
| CTCTTAAATGAACAAGTAGA+AGG | 0.471330 | tig0016220:-172879 | Msa1358040:CDS |
| CTTTACAATTTGTTTCCTAA+GGG | 0.471588 | tig0016220:+174207 | None:intergenic |
| ATGGGGAAATCGAAATGTAT+AGG | 0.471968 | tig0016220:-173691 | Msa1358040:CDS |
| AGAGACATGAGAGGGCTTTG+TGG | 0.474075 | tig0016220:+175327 | None:intergenic |
| TGGCATCGTCCATGCGTTTG+TGG | 0.475881 | tig0016220:+174089 | None:intergenic |
| CTAGCTTATGTACAAGCTTG+TGG | 0.476951 | tig0016220:+173597 | None:intergenic |
| ATTTGGAGATTCCGCGGCAC+GGG | 0.477344 | tig0016220:+174459 | None:intergenic |
| GCTTCAATTCAATGCTACTA+AGG | 0.477435 | tig0016220:-176166 | Msa1358040:intron |
| GAGTTTCATCTCTAACTCTT+GGG | 0.477504 | tig0016220:+173826 | None:intergenic |
| CGCTGCTTTGGCGAGGCACG+TGG | 0.482197 | tig0016220:-174254 | Msa1358040:CDS |
| GGTTCTTGCCGTGCAGGACC+TGG | 0.487908 | tig0016220:-173924 | Msa1358040:CDS |
| GGGCCATAACTGGAACAAAC+TGG | 0.489446 | tig0016220:+174479 | None:intergenic |
| AGACAGAATGTGACAATGTC+AGG | 0.491642 | tig0016220:-174117 | Msa1358040:CDS |
| TTATCAAAAGCTAGCGCGGT+CGG | 0.492008 | tig0016220:-175385 | Msa1358040:CDS |
| TCAAGTTCTGATGACAGCTC+TGG | 0.494881 | tig0016220:-174559 | Msa1358040:CDS |
| TGAATTGGTTCTTGCCGTGC+AGG | 0.496687 | tig0016220:-173930 | Msa1358040:CDS |
| CCTGAATCTCTTCTCAATGC+TGG | 0.497104 | tig0016220:+172515 | None:intergenic |
| GTCTAAACATTCCAATGGAC+AGG | 0.497144 | tig0016220:-173864 | Msa1358040:CDS |
| TTGTCTTTCACCTTCGACCT+CGG | 0.497897 | tig0016220:+171492 | None:intergenic |
| GAGTCTCTCCATCTCCAAAT+GGG | 0.499624 | tig0016220:+174288 | None:intergenic |
| TCCAGTTATGGCCCGTGCCG+CGG | 0.500299 | tig0016220:-174470 | Msa1358040:CDS |
| CACAATTGCGTCATTGAAGA+AGG | 0.500768 | tig0016220:-172754 | Msa1358040:CDS |
| TCAATGTCATTCATAGCAGC+AGG | 0.501038 | tig0016220:+173521 | None:intergenic |
| AGCCCTTATGGACACTCTTG+AGG | 0.501555 | tig0016220:+171446 | None:intergenic |
| AAGAGTGAAATAAAGAAGAA+AGG | 0.501656 | tig0016220:-172549 | Msa1358040:CDS |
| AAAGTCAAAGGAAACTGCCT+TGG | 0.503241 | tig0016220:-172198 | Msa1358040:CDS |
| AACAACTTCATCTATGAAGA+AGG | 0.504107 | tig0016220:-172168 | Msa1358040:CDS |
| TTCATCTATGAAGAAGGAAA+AGG | 0.506959 | tig0016220:-172162 | Msa1358040:CDS |
| TTGGTGTTGTCAATAGTTCC+TGG | 0.507047 | tig0016220:-175655 | Msa1358040:CDS |
| CTCAAATTTGCCGAGGTCGA+AGG | 0.512604 | tig0016220:-171502 | Msa1358040:CDS |
| ACATGGAACTACAGACCCTT+AGG | 0.513199 | tig0016220:-174222 | Msa1358040:CDS |
| TCAATAGTTCCTGGTGACAT+TGG | 0.514235 | tig0016220:-175646 | Msa1358040:CDS |
| ATCAAAAGCTAGCGCGGTCG+GGG | 0.515068 | tig0016220:-175383 | Msa1358040:CDS |
| CATTATCTTGAAAGATGAAA+GGG | 0.517094 | tig0016220:-174149 | Msa1358040:CDS |
| TCAGAGCAGAATTGTGGAGC+TGG | 0.519772 | tig0016220:-171945 | Msa1358040:CDS |
| TCAGAGCAGAATTGTGGAGC+TGG | 0.519772 | tig0016220:-172135 | Msa1358040:CDS |
| GAAGGAAAGAAACAAATCAA+TGG | 0.521587 | tig0016220:-171569 | Msa1358040:CDS |
| TTTATCGTGTTCCTGTCCAT+TGG | 0.522075 | tig0016220:+173853 | None:intergenic |
| ATCATCTATGAAGAAGGAAA+AGG | 0.522742 | tig0016220:-171972 | Msa1358040:intron |
| CTGCAGTGTATAGCTGTAGC+AGG | 0.523315 | tig0016220:-171393 | Msa1358040:three_prime_UTR |
| AGTATGGGCGATTCAACAAA+CGG | 0.523348 | tig0016220:-174352 | Msa1358040:CDS |
| ATTGTAAAGGAAAGCAAAAG+AGG | 0.523810 | tig0016220:-174193 | Msa1358040:CDS |
| GCAGGACCTGGAAGAGATGT+TGG | 0.525811 | tig0016220:-173912 | Msa1358040:CDS |
| TTTACATCAGAGATCACAAT+GGG | 0.529077 | tig0016220:-174404 | Msa1358040:CDS |
| TTCTCAAAATGCCCTTTCCA+AGG | 0.530388 | tig0016220:-174329 | Msa1358040:CDS |
| CGTCATCTAGCTCAGAGCTC+GGG | 0.531611 | tig0016220:-174378 | Msa1358040:CDS |
| TAACATTTCAAATACCAAGA+AGG | 0.531925 | tig0016220:+171297 | None:intergenic |
| TACCTTTGATGAAAATGAGA+AGG | 0.534206 | tig0016220:-173207 | Msa1358040:CDS |
| ATAAACAACAGAACGTCTAG+TGG | 0.536249 | tig0016220:-174598 | Msa1358040:CDS |
| TGCTTCGGTCAATGCTCTCA+TGG | 0.536262 | tig0016220:+173181 | None:intergenic |
| GCAGGTGTACTTTGCAGCAG+TGG | 0.537617 | tig0016220:-171375 | Msa1358040:three_prime_UTR |
| AACAGGTCACAGTTGGAAAG+TGG | 0.538483 | tig0016220:-174058 | Msa1358040:CDS |
| ACAATCAGGGGTAGATGCAT+TGG | 0.538961 | tig0016220:-175674 | Msa1358040:CDS |
| TATTTCAGGTGTTACAATCA+GGG | 0.542788 | tig0016220:-175687 | Msa1358040:intron |
| CATTTGGAGATTCCGCGGCA+CGG | 0.543245 | tig0016220:+174458 | None:intergenic |
| AGAAATCTTAAGAACTGACT+TGG | 0.543909 | tig0016220:-172853 | Msa1358040:CDS |
| CGGTTCAAGATGGAAATTGT+CGG | 0.544548 | tig0016220:-175594 | Msa1358040:CDS |
| TCAGATACAGCAGATGTTGG+TGG | 0.544798 | tig0016220:-173027 | Msa1358040:CDS |
| TCTGAAACATTGTTACATCA+AGG | 0.545037 | tig0016220:-172804 | Msa1358040:CDS |
| TCGTCATCTAGCTCAGAGCT+CGG | 0.545721 | tig0016220:-174379 | Msa1358040:CDS |
| TTGTATCTATTTGATTGCAA+AGG | 0.545922 | tig0016220:+173057 | None:intergenic |
| TGAAGTTGTTGAACTTTCCA+AGG | 0.546447 | tig0016220:+172181 | None:intergenic |
| GGACGCAACCAACTTTCTGA+TGG | 0.547926 | tig0016220:-172483 | Msa1358040:CDS |
| TAGACTATTGAAGTCAGAGT+TGG | 0.550029 | tig0016220:-172664 | Msa1358040:CDS |
| GAGAAAGCTACGGTTCAAGA+TGG | 0.550233 | tig0016220:-175604 | Msa1358040:CDS |
| CAGCATTGAGAAGAGATTCA+GGG | 0.550761 | tig0016220:-172514 | Msa1358040:CDS |
| AACTGGAACAAACTGGTTTG+TGG | 0.550964 | tig0016220:+174486 | None:intergenic |
| TATTATCAGGATCCAAAGAC+CGG | 0.553668 | tig0016220:-175541 | Msa1358040:CDS |
| GTTGGTCTTCCAATGTCACC+AGG | 0.557975 | tig0016220:+175637 | None:intergenic |
| GGAACTTCAGAGCAGAATTG+TGG | 0.558888 | tig0016220:-171951 | Msa1358040:CDS |
| GGAACTTCAGAGCAGAATTG+TGG | 0.558888 | tig0016220:-172141 | Msa1358040:CDS |
| GGAACAAACTGGTTTGTGGT+GGG | 0.559149 | tig0016220:+174490 | None:intergenic |
| AACCTCAAGAGTGTCCATAA+GGG | 0.560828 | tig0016220:-171448 | Msa1358040:CDS |
| CACGCGGACAATAGTCTTGG+TGG | 0.562303 | tig0016220:-171616 | Msa1358040:CDS |
| GGCGAGGCACGTGGATGTGT+CGG | 0.566205 | tig0016220:-174245 | Msa1358040:CDS |
| GCACGTGGATGTGTCGGACA+TGG | 0.566394 | tig0016220:-174239 | Msa1358040:CDS |
| TCATTATCTTGAAAGATGAA+AGG | 0.568558 | tig0016220:-174150 | Msa1358040:CDS |
| ACTTATGAAGAAATCAATTG+AGG | 0.571259 | tig0016220:-172829 | Msa1358040:CDS |
| CCTTAGGAAACAAATTGTAA+AGG | 0.572841 | tig0016220:-174206 | Msa1358040:CDS |
| GAACACGCGGACAATAGTCT+TGG | 0.573106 | tig0016220:-171619 | Msa1358040:CDS |
| GGGAAATCGAAATGTATAGG+AGG | 0.573376 | tig0016220:-173688 | Msa1358040:CDS |
| CTGCTACAGCTATACACTGC+AGG | 0.574967 | tig0016220:+171394 | None:intergenic |
| ACGTAGCGTGTAAGAACAGA+AGG | 0.578756 | tig0016220:+176433 | None:intergenic |
| TGAAGCTGATATAGAAGCAA+TGG | 0.579079 | tig0016220:-173363 | Msa1358040:CDS |
| AGTGAGAAACAGGTCACAGT+TGG | 0.580096 | tig0016220:-174065 | Msa1358040:CDS |
| TGCGTCATTGAAGAAGGAAG+CGG | 0.583079 | tig0016220:-172748 | Msa1358040:CDS |
| AGAGGCATCCCATTTGGAGA+TGG | 0.583581 | tig0016220:-174296 | Msa1358040:CDS |
| CTTCCCATCAGGAATTCTCA+TGG | 0.584077 | tig0016220:-175304 | Msa1358040:CDS |
| AATTCAGATACAGCAGATGT+TGG | 0.585982 | tig0016220:-173030 | Msa1358040:CDS |
| AAAGGAAAGCAAAAGAGGGC+AGG | 0.588422 | tig0016220:-174188 | Msa1358040:CDS |
| TAAATCATGCATCGGTGTCG+AGG | 0.589755 | tig0016220:+174423 | None:intergenic |
| ATTTCAGGTGTTACAATCAG+GGG | 0.591987 | tig0016220:-175686 | Msa1358040:intron |
| AATATGTCTAAACATTCCAA+TGG | 0.592097 | tig0016220:-173869 | Msa1358040:CDS |
| AATTCGATGATAAGAGCTCA+AGG | 0.592445 | tig0016220:-174933 | Msa1358040:CDS |
| TCAGAGCTCGGGTTAAGTAT+GGG | 0.598271 | tig0016220:-174367 | Msa1358040:CDS |
| AGAACTCAAGGAGCAGTCAG+AGG | 0.599935 | tig0016220:-173474 | Msa1358040:CDS |
| TACAGCTGAAAGGCTTCAAG+AGG | 0.600122 | tig0016220:-173261 | Msa1358040:CDS |
| TTCAAGATGGAAATTGTCGG+TGG | 0.600830 | tig0016220:-175591 | Msa1358040:CDS |
| TCAGGGCCTGATAAAGTCAA+AGG | 0.602212 | tig0016220:-172210 | Msa1358040:intron |
| AGCATTGGATGATCTTGTCA+AGG | 0.603938 | tig0016220:-173768 | Msa1358040:CDS |
| TGTTTCGTTCTTCAAAATGG+AGG | 0.604012 | tig0016220:-176221 | Msa1358040:CDS |
| GAACAAACTGGTTTGTGGTG+GGG | 0.604811 | tig0016220:+174491 | None:intergenic |
| CTGAACTCGCTGCTTTGGCG+AGG | 0.604966 | tig0016220:-174261 | Msa1358040:CDS |
| TTTCTCAGTCCAATTTCGCA+GGG | 0.605119 | tig0016220:+174526 | None:intergenic |
| AAGTAAAATGAGAAATCTCA+AGG | 0.605138 | tig0016220:-172706 | Msa1358040:CDS |
| CTCTGATGTAAATCATGCAT+CGG | 0.607162 | tig0016220:+174415 | None:intergenic |
| AGCAGCATTTGGAGATTCCG+CGG | 0.610316 | tig0016220:+174453 | None:intergenic |
| TCGGTGGTTGATCAACTCGT+TGG | 0.613976 | tig0016220:+176390 | None:intergenic |
| TGGAACAAACTGGTTTGTGG+TGG | 0.614538 | tig0016220:+174489 | None:intergenic |
| AAGAGGGCAGGATCTCATGA+AGG | 0.615741 | tig0016220:-174176 | Msa1358040:CDS |
| CAGGTCTTTCCACAAACGCA+TGG | 0.619261 | tig0016220:-174098 | Msa1358040:CDS |
| TTGTAAAGGAAAGCAAAAGA+GGG | 0.620965 | tig0016220:-174192 | Msa1358040:CDS |
| GCAGGCTCCAATATATCAAG+AGG | 0.621129 | tig0016220:+171412 | None:intergenic |
| AAAATGCTAATACAGCTGAA+AGG | 0.622552 | tig0016220:-173271 | Msa1358040:CDS |
| GCAAAGAGCCATCCAAGCCG+AGG | 0.624482 | tig0016220:-173318 | Msa1358040:CDS |
| AAGAGATTCAGGGATAGTAA+CGG | 0.632337 | tig0016220:-172504 | Msa1358040:CDS |
| ATGGGAAGAGAGACATGAGA+GGG | 0.634288 | tig0016220:+175319 | None:intergenic |
| TCAAGATGGAAATTGTCGGT+GGG | 0.636130 | tig0016220:-175590 | Msa1358040:CDS |
| ATCACCATGAGAATTCCTGA+TGG | 0.636391 | tig0016220:+175300 | None:intergenic |
| TCACCATGAGAATTCCTGAT+GGG | 0.636505 | tig0016220:+175301 | None:intergenic |
| AAAGAGATTAGAGAAAGCTA+CGG | 0.643270 | tig0016220:-175614 | Msa1358040:CDS |
| AATGTATAGGAGGGACAAAG+AGG | 0.644821 | tig0016220:-173678 | Msa1358040:CDS |
| TGTGGAGCTGGAGAACAAAG+TGG | 0.648905 | tig0016220:-171933 | Msa1358040:CDS |
| TGTGGAGCTGGAGAACAAAG+TGG | 0.648905 | tig0016220:-172123 | Msa1358040:CDS |
| GGAAATCGAAATGTATAGGA+GGG | 0.649296 | tig0016220:-173687 | Msa1358040:CDS |
| TCAAGGAACCAATTCAGCAA+CGG | 0.650410 | tig0016220:-174916 | Msa1358040:CDS |
| ATTGTTACATCAAGGAACTG+TGG | 0.651765 | tig0016220:-172796 | Msa1358040:CDS |
| CCATATCAGAAGATTAGAGG+AGG | 0.654206 | tig0016220:-173411 | Msa1358040:CDS |
| CATCTCTTCCAGGTCCTGCA+CGG | 0.656396 | tig0016220:+173916 | None:intergenic |
| CGAAAATCAGAAGAAGCTTG+GGG | 0.658269 | tig0016220:-172979 | Msa1358040:CDS |
| TAAACAACAGAACGTCTAGT+GGG | 0.662018 | tig0016220:-174597 | Msa1358040:CDS |
| TTCCAAGGAAAGTTCCCAAG+AGG | 0.662303 | tig0016220:-174314 | Msa1358040:CDS |
| GATGGGAAGAGAGACATGAG+AGG | 0.665257 | tig0016220:+175318 | None:intergenic |
| AATGAGTCTCAAATTTGCCG+AGG | 0.681950 | tig0016220:-171509 | Msa1358040:CDS |
| AGTTAATAGGGATTTCTCTG+AGG | 0.682694 | tig0016220:-172952 | Msa1358040:CDS |
| TCAGAACGTTACTTTACACG+AGG | 0.685129 | tig0016220:-171900 | Msa1358040:intron |
| TCAGAACGTTACTTTACACG+AGG | 0.685129 | tig0016220:-172090 | Msa1358040:intron |
| GGGGTTATCAAAAGCTAGCG+CGG | 0.685962 | tig0016220:-175389 | Msa1358040:CDS |
| ATGTCATTCATAGCAGCAGG+CGG | 0.688666 | tig0016220:+173524 | None:intergenic |
| GTCAACTAAAGCCAATTACG+AGG | 0.689810 | tig0016220:-173093 | Msa1358040:CDS |
| ATTTACATCAGAGATCACAA+TGG | 0.703701 | tig0016220:-174405 | Msa1358040:CDS |
| AGAACTTGACAATGTAACGT+CGG | 0.708038 | tig0016220:+174573 | None:intergenic |
| GGAGCTGGAGAACAAAGTGG+AGG | 0.710392 | tig0016220:-171930 | Msa1358040:CDS |
| GGAGCTGGAGAACAAAGTGG+AGG | 0.710392 | tig0016220:-172120 | Msa1358040:CDS |
| AAGAAATAGATTGGAACACG+CGG | 0.713897 | tig0016220:-171632 | Msa1358040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAAAATTACTAAACT+CGG | + | tig0016220:171332-171351 | None:intergenic | 10.0% |
| !! | TTATATTATTATTGAAATCT+AGG | + | tig0016220:171817-171836 | None:intergenic | 10.0% |
| !!! | CATTTTTTTTTTATTCTTAA+TGG | - | tig0016220:171925-171944 | Msa1358040:CDS | 10.0% |
| !!! | TCTTTTATATTAACATAAAA+AGG | + | tig0016220:175461-175480 | None:intergenic | 10.0% |
| !! | TAATAAACTAATGTTTATAA+TGG | - | tig0016220:176363-176382 | Msa1358040:five_prime_UTR | 10.0% |
| !!! | TTTTTATTCTTAATGGTATT+AGG | - | tig0016220:171932-171951 | Msa1358040:CDS | 15.0% |
| !!! | TGTCATTGTTATAAAATTTT+TGG | - | tig0016220:172277-172296 | Msa1358040:intron | 15.0% |
| !!! | GTCATTGTTATAAAATTTTT+GGG | - | tig0016220:172278-172297 | Msa1358040:intron | 15.0% |
| !!! | TGATTTTTTGATTAATAAAC+AGG | - | tig0016220:172553-172572 | Msa1358040:CDS | 15.0% |
| !! | AAAAAAATGATCAAATTCAA+AGG | - | tig0016220:172597-172616 | Msa1358040:CDS | 15.0% |
| !! | AAAAAAATTATAGACTTGTA+TGG | - | tig0016220:173990-174009 | Msa1358040:CDS | 15.0% |
| !! | AAAAAATTATAGACTTGTAT+GGG | - | tig0016220:173991-174010 | Msa1358040:CDS | 15.0% |
| !! | ATCTTATGTTTCAGATATTA+AGG | + | tig0016220:171219-171238 | None:intergenic | 20.0% |
| !!! | TACATTGAATTTTTGATAAC+TGG | - | tig0016220:171353-171372 | Msa1358040:three_prime_UTR | 20.0% |
| !! | GAATGAATAATCTAATGTAT+TGG | - | tig0016220:171675-171694 | Msa1358040:CDS | 20.0% |
| !! | CAAGAAAATTGAAATATGAT+AGG | + | tig0016220:171864-171883 | None:intergenic | 20.0% |
| !!! | CTATCATATTTCAATTTTCT+TGG | - | tig0016220:171862-171881 | Msa1358040:intron | 20.0% |
| !!! | AATTTTCTTGGAAATGAAAA+TGG | - | tig0016220:171874-171893 | Msa1358040:intron | 20.0% |
| !!! | CATTATTATTTTTCCATTTC+TGG | - | tig0016220:172638-172657 | Msa1358040:CDS | 20.0% |
| !! | TTTGTTTGTATATATTCAAC+TGG | - | tig0016220:172931-172950 | Msa1358040:CDS | 20.0% |
| !! | AAAAATTATAGACTTGTATG+GGG | - | tig0016220:173992-174011 | Msa1358040:CDS | 20.0% |
| !!! | TTTTAATATCTCATAGTCTA+GGG | + | tig0016220:174075-174094 | None:intergenic | 20.0% |
| !!! | AAGCAATTTTTTTGTTGATT+GGG | + | tig0016220:175255-175274 | None:intergenic | 20.0% |
| !! | TATAAAAGATTGTTTATGTC+AGG | - | tig0016220:175472-175491 | Msa1358040:intron | 20.0% |
| !! | ATAAAAGATTGTTTATGTCA+GGG | - | tig0016220:175473-175492 | Msa1358040:intron | 20.0% |
| ! | AAAAAAATTACTAAACTCGG+TGG | + | tig0016220:171329-171348 | None:intergenic | 25.0% |
| !!! | TGAATTTTTGATAACTGGAA+CGG | - | tig0016220:171358-171377 | Msa1358040:three_prime_UTR | 25.0% |
| ! | TATTCTTAATGGTATTAGGT+TGG | - | tig0016220:171936-171955 | Msa1358040:CDS | 25.0% |
| !!! | TATTTTGTCGTTGATTTTTC+CGG | + | tig0016220:172181-172200 | None:intergenic | 25.0% |
| !!! | ATATCATTTTTTGCTCTCAA+CGG | - | tig0016220:172200-172219 | Msa1358040:CDS | 25.0% |
| !!! | AAATTTTTGGGTTTATATGC+AGG | - | tig0016220:172290-172309 | Msa1358040:intron | 25.0% |
| !!! | AATTTTTGGGTTTATATGCA+GGG | - | tig0016220:172291-172310 | Msa1358040:intron | 25.0% |
| !!! | CTTCACTCAAAATTTTGATT+AGG | + | tig0016220:172500-172519 | None:intergenic | 25.0% |
| !!! | AAATTCAAAGGTACTACAAA+GGG | - | tig0016220:172609-172628 | Msa1358040:CDS | 25.0% |
| ! | AAAATTCTTGTGACTTCTTA+CGG | - | tig0016220:172869-172888 | Msa1358040:CDS | 25.0% |
| !!! | CTTCACATGTTTTTTACTTT+CGG | + | tig0016220:173026-173045 | None:intergenic | 25.0% |
| !! | CTTTACAATTTGTTTCCTAA+GGG | + | tig0016220:173496-173515 | None:intergenic | 25.0% |
| ! | TCATTATCTTGAAAGATGAA+AGG | - | tig0016220:173550-173569 | Msa1358040:CDS | 25.0% |
| ! | CATTATCTTGAAAGATGAAA+GGG | - | tig0016220:173551-173570 | Msa1358040:CDS | 25.0% |
| !!! | GCATCTTTTTTAACTGTAAT+CGG | + | tig0016220:173737-173756 | None:intergenic | 25.0% |
| ! | AATATGTCTAAACATTCCAA+TGG | - | tig0016220:173831-173850 | Msa1358040:CDS | 25.0% |
| !!! | GTTTTAATATCTCATAGTCT+AGG | + | tig0016220:174076-174095 | None:intergenic | 25.0% |
| ! | AGACTATGAGATATTAAAAC+AGG | - | tig0016220:174076-174095 | Msa1358040:CDS | 25.0% |
| ! | TTGTATCTATTTGATTGCAA+AGG | + | tig0016220:174646-174665 | None:intergenic | 25.0% |
| ! | ACTTATGAAGAAATCAATTG+AGG | - | tig0016220:174871-174890 | Msa1358040:intron | 25.0% |
| ! | AAGTAAAATGAGAAATCTCA+AGG | - | tig0016220:174994-175013 | Msa1358040:intron | 25.0% |
| !!! | TTTGAAAAAGTCACTTTTTG+AGG | - | tig0016220:175084-175103 | Msa1358040:intron | 25.0% |
| ! | AAGAGTGAAATAAAGAAGAA+AGG | - | tig0016220:175151-175170 | Msa1358040:intron | 25.0% |
| !!! | AATTTTTTTGTTGATTGGGA+TGG | + | tig0016220:175251-175270 | None:intergenic | 25.0% |
| !!! | GAAGCAATTTTTTTGTTGAT+TGG | + | tig0016220:175256-175275 | None:intergenic | 25.0% |
| ! | AGAGAAAATAAAAATGCTTG+AGG | - | tig0016220:175312-175331 | Msa1358040:CDS | 25.0% |
| ! | ACATAAAAAGGAGAAAATGA+AGG | + | tig0016220:175449-175468 | None:intergenic | 25.0% |
| ! | AGAAGAAGTAAGAAATAGAT+TGG | - | tig0016220:176059-176078 | Msa1358040:intron | 25.0% |
| ! | AATATGTTATTCTTCCTTCT+TGG | - | tig0016220:176389-176408 | Msa1358040:five_prime_UTR | 25.0% |
| ! | TAACATTTCAAATACCAAGA+AGG | + | tig0016220:176406-176425 | None:intergenic | 25.0% |
| ATTGAAATAACGTTCGTTGT+TGG | - | tig0016220:171166-171185 | Msa1358040:three_prime_UTR | 30.0% | |
| !!! | GTTGTTTTTGGTGTTTTAGT+TGG | - | tig0016220:171380-171399 | Msa1358040:three_prime_UTR | 30.0% |
| AGATGTTTCGTTCTTCAAAA+TGG | - | tig0016220:171476-171495 | Msa1358040:CDS | 30.0% | |
| !! | TCTAATGTATTGGTTCTGTT+AGG | - | tig0016220:171685-171704 | Msa1358040:intron | 30.0% |
| ATGAGATGAGAAATTGTGTT+TGG | - | tig0016220:171982-172001 | Msa1358040:intron | 30.0% | |
| !! | GTTTGGTGATGTAATATTTC+AGG | - | tig0016220:171999-172018 | Msa1358040:intron | 30.0% |
| ! | ATATTTCAGGTGTTACAATC+AGG | - | tig0016220:172012-172031 | Msa1358040:intron | 30.0% |
| ! | TATTTCAGGTGTTACAATCA+GGG | - | tig0016220:172013-172032 | Msa1358040:intron | 30.0% |
| AAAGAGATTAGAGAAAGCTA+CGG | - | tig0016220:172086-172105 | Msa1358040:intron | 30.0% | |
| !!! | ATTTTTGGGTTTATATGCAG+GGG | - | tig0016220:172292-172311 | Msa1358040:intron | 30.0% |
| ATTTCAAGCAACTTTACATC+TGG | + | tig0016220:172467-172486 | None:intergenic | 30.0% | |
| !!! | CATTTTTTTCTTGCATTCTC+TGG | + | tig0016220:172586-172605 | None:intergenic | 30.0% |
| !! | CAAATTCAAAGGTACTACAA+AGG | - | tig0016220:172608-172627 | Msa1358040:CDS | 30.0% |
| CAATCTTGTATAACCAGAAA+TGG | + | tig0016220:172654-172673 | None:intergenic | 30.0% | |
| !! | CATTTCTGGTTATACAAGAT+TGG | - | tig0016220:172652-172671 | Msa1358040:CDS | 30.0% |
| !!! | CTTGAGAGTTTTTTATGATG+TGG | - | tig0016220:172685-172704 | Msa1358040:CDS | 30.0% |
| TTTCAATAACATTTGCAGAG+AGG | - | tig0016220:172717-172736 | Msa1358040:CDS | 30.0% | |
| ATTTACATCAGAGATCACAA+TGG | - | tig0016220:173295-173314 | Msa1358040:CDS | 30.0% | |
| TTTACATCAGAGATCACAAT+GGG | - | tig0016220:173296-173315 | Msa1358040:CDS | 30.0% | |
| ! | CCTTTACAATTTGTTTCCTA+AGG | + | tig0016220:173497-173516 | None:intergenic | 30.0% |
| CCTTAGGAAACAAATTGTAA+AGG | - | tig0016220:173494-173513 | Msa1358040:CDS | 30.0% | |
| ATTGTAAAGGAAAGCAAAAG+AGG | - | tig0016220:173507-173526 | Msa1358040:CDS | 30.0% | |
| TTGTAAAGGAAAGCAAAAGA+GGG | - | tig0016220:173508-173527 | Msa1358040:CDS | 30.0% | |
| ! | TGATGAAGATCAAAAAGCAT+TGG | - | tig0016220:173917-173936 | Msa1358040:CDS | 30.0% |
| AAATTCTCTAGCTACCATTA+AGG | - | tig0016220:174256-174275 | Msa1358040:CDS | 30.0% | |
| !! | TGTATTAGCATTTTTCAGTC+TGG | + | tig0016220:174423-174442 | None:intergenic | 30.0% |
| AAAATGCTAATACAGCTGAA+AGG | - | tig0016220:174429-174448 | Msa1358040:CDS | 30.0% | |
| TACCTTTGATGAAAATGAGA+AGG | - | tig0016220:174493-174512 | Msa1358040:CDS | 30.0% | |
| CTCTTAAATGAACAAGTAGA+AGG | - | tig0016220:174821-174840 | Msa1358040:intron | 30.0% | |
| AGAAATCTTAAGAACTGACT+TGG | - | tig0016220:174847-174866 | Msa1358040:intron | 30.0% | |
| ! | TCTGAAACATTGTTACATCA+AGG | - | tig0016220:174896-174915 | Msa1358040:CDS | 30.0% |
| ! | CTTTATTTCACTCTTTAGCT+GGG | + | tig0016220:175146-175165 | None:intergenic | 30.0% |
| ! | TCTTTATTTCACTCTTTAGC+TGG | + | tig0016220:175147-175166 | None:intergenic | 30.0% |
| ! | TTTTAGATCCATCAGAAAGT+TGG | + | tig0016220:175228-175247 | None:intergenic | 30.0% |
| TCCTCATCATTCAAAAGAAA+TGG | - | tig0016220:175279-175298 | Msa1358040:intron | 30.0% | |
| CATCAATGATATGAAGACAT+AGG | - | tig0016220:175347-175366 | Msa1358040:CDS | 30.0% | |
| AACAACTTCATCTATGAAGA+AGG | - | tig0016220:175532-175551 | Msa1358040:CDS | 30.0% | |
| TTCATCTATGAAGAAGGAAA+AGG | - | tig0016220:175538-175557 | Msa1358040:CDS | 30.0% | |
| CAAGACTAAGTTTGTAATTC+AGG | + | tig0016220:175699-175718 | None:intergenic | 30.0% | |
| !! | ATTACAAACTTAGTCTTGCT+TGG | - | tig0016220:175701-175720 | Msa1358040:intron | 30.0% |
| GGAAATATCATCTATGAAGA+AGG | - | tig0016220:175722-175741 | Msa1358040:intron | 30.0% | |
| ATCATCTATGAAGAAGGAAA+AGG | - | tig0016220:175728-175747 | Msa1358040:intron | 30.0% | |
| CAAGACTAAGTTTGTAATTC+AGG | + | tig0016220:175699-175718 | None:intergenic | 30.0% | |
| !! | ATTACAAACTTAGTCTTGCT+TGG | - | tig0016220:175701-175720 | Msa1358040:intron | 30.0% |
| AAACATTCGTTGTTGAAATG+TGG | - | tig0016220:175930-175949 | Msa1358040:intron | 30.0% | |
| GAAGGAAAGAAACAAATCAA+TGG | - | tig0016220:176131-176150 | Msa1358040:intron | 30.0% | |
| ! | GTTTTCTCCTCTTGATATAT+TGG | - | tig0016220:176281-176300 | Msa1358040:five_prime_UTR | 30.0% |
| !! | ATAACTGGAACGGTTGTTTT+TGG | - | tig0016220:171368-171387 | Msa1358040:three_prime_UTR | 35.0% |
| !!! | GTTTTTGGTGTTTTAGTTGG+TGG | - | tig0016220:171383-171402 | Msa1358040:three_prime_UTR | 35.0% |
| TGTTTCGTTCTTCAAAATGG+AGG | - | tig0016220:171479-171498 | Msa1358040:CDS | 35.0% | |
| GCTTCAATTCAATGCTACTA+AGG | - | tig0016220:171534-171553 | Msa1358040:CDS | 35.0% | |
| CAATTCAATGCTACTAAGGT+AGG | - | tig0016220:171538-171557 | Msa1358040:CDS | 35.0% | |
| ! | ATTTCAGGTGTTACAATCAG+GGG | - | tig0016220:172014-172033 | Msa1358040:intron | 35.0% |
| GCTTTCTCTAATCTCTTTGT+TGG | + | tig0016220:172084-172103 | None:intergenic | 35.0% | |
| CGAAACAGTCAAGTATTATC+AGG | - | tig0016220:172146-172165 | Msa1358040:CDS | 35.0% | |
| TATTATCAGGATCCAAAGAC+CGG | - | tig0016220:172159-172178 | Msa1358040:CDS | 35.0% | |
| !! | AAAGGTACTACAAAGGGAAT+TGG | - | tig0016220:172615-172634 | Msa1358040:CDS | 35.0% |
| AATTCGATGATAAGAGCTCA+AGG | - | tig0016220:172767-172786 | Msa1358040:CDS | 35.0% | |
| AGTAAGCATTTCACTCATTC+AGG | - | tig0016220:172843-172862 | Msa1358040:CDS | 35.0% | |
| ! | CGTTCTGTTGTTTATTGCTT+TGG | + | tig0016220:173097-173116 | None:intergenic | 35.0% |
| ATAAACAACAGAACGTCTAG+TGG | - | tig0016220:173102-173121 | Msa1358040:CDS | 35.0% | |
| TAAACAACAGAACGTCTAGT+GGG | - | tig0016220:173103-173122 | Msa1358040:CDS | 35.0% | |
| AGAACTTGACAATGTAACGT+CGG | + | tig0016220:173130-173149 | None:intergenic | 35.0% | |
| ! | AAACCAGTTTGTTCCAGTTA+TGG | - | tig0016220:173218-173237 | Msa1358040:CDS | 35.0% |
| CTCTGATGTAAATCATGCAT+CGG | + | tig0016220:173288-173307 | None:intergenic | 35.0% | |
| TTGTCTGATTTCTTCGACAA+AGG | + | tig0016220:173679-173698 | None:intergenic | 35.0% | |
| GCAAGAATCAAATGCTGAAT+TGG | - | tig0016220:173755-173774 | Msa1358040:CDS | 35.0% | |
| GAGTTTCATCTCTAACTCTT+GGG | + | tig0016220:173877-173896 | None:intergenic | 35.0% | |
| AGAGTTTCATCTCTAACTCT+TGG | + | tig0016220:173878-173897 | None:intergenic | 35.0% | |
| ATGGGGAAATCGAAATGTAT+AGG | - | tig0016220:174009-174028 | Msa1358040:CDS | 35.0% | |
| GGAAATCGAAATGTATAGGA+GGG | - | tig0016220:174013-174032 | Msa1358040:CDS | 35.0% | |
| TGTTTAACTGTTCCTGCAAT+TGG | + | tig0016220:174136-174155 | None:intergenic | 35.0% | |
| TGAAACTCACATTGAGAATC+TGG | - | tig0016220:174199-174218 | Msa1358040:CDS | 35.0% | |
| GAATCTGGAAAAAGAACTCA+AGG | - | tig0016220:174214-174233 | Msa1358040:CDS | 35.0% | |
| !! | ATGGGTTTCTAGTACCTTAA+TGG | + | tig0016220:174273-174292 | None:intergenic | 35.0% |
| AACCCATATCAGAAGATTAG+AGG | - | tig0016220:174286-174305 | Msa1358040:CDS | 35.0% | |
| CTCCTCTAATCTTCTGATAT+GGG | + | tig0016220:174291-174310 | None:intergenic | 35.0% | |
| GAGATGGAAAAACAAGTACA+GGG | - | tig0016220:174311-174330 | Msa1358040:CDS | 35.0% | |
| TGAAGCTGATATAGAAGCAA+TGG | - | tig0016220:174337-174356 | Msa1358040:CDS | 35.0% | |
| ! | AGCCTTCTCATTTTCATCAA+AGG | + | tig0016220:174498-174517 | None:intergenic | 35.0% |
| CTACAGAAAAATCTAGTGGA+AGG | - | tig0016220:174554-174573 | Msa1358040:CDS | 35.0% | |
| ! | GTTCAGTTTTACCTCGTAAT+TGG | + | tig0016220:174621-174640 | None:intergenic | 35.0% |
| AATTCAGATACAGCAGATGT+TGG | - | tig0016220:174670-174689 | Msa1358040:intron | 35.0% | |
| TCGAAAATCAGAAGAAGCTT+GGG | - | tig0016220:174720-174739 | Msa1358040:intron | 35.0% | |
| AGTTAATAGGGATTTCTCTG+AGG | - | tig0016220:174748-174767 | Msa1358040:intron | 35.0% | |
| ATTGTTACATCAAGGAACTG+TGG | - | tig0016220:174904-174923 | Msa1358040:CDS | 35.0% | |
| CAAGGAAGAAAAAGAAGAAG+AGG | - | tig0016220:175012-175031 | Msa1358040:intron | 35.0% | |
| TAGACTATTGAAGTCAGAGT+TGG | - | tig0016220:175036-175055 | Msa1358040:intron | 35.0% | |
| !!! | AAAGTCACTTTTTGAGGATG+AGG | - | tig0016220:175090-175109 | Msa1358040:intron | 35.0% |
| AAGAGATTCAGGGATAGTAA+CGG | - | tig0016220:175196-175215 | Msa1358040:intron | 35.0% | |
| ! | TTCTTTTGAATGATGAGGAC+TGG | + | tig0016220:175278-175297 | None:intergenic | 35.0% |
| ! | GCCATTTCTTTTGAATGATG+AGG | + | tig0016220:175283-175302 | None:intergenic | 35.0% |
| TACAAGAGAAAACAGCATTC+AGG | + | tig0016220:175401-175420 | None:intergenic | 35.0% | |
| ! | CAGTTTCCTTTGACTTTATC+AGG | + | tig0016220:175499-175518 | None:intergenic | 35.0% |
| TGAAGTTGTTGAACTTTCCA+AGG | + | tig0016220:175522-175541 | None:intergenic | 35.0% | |
| ! | AGTTTGTAATTCAGGTTTCG+TGG | + | tig0016220:175691-175710 | None:intergenic | 35.0% |
| ! | AGTTTGTAATTCAGGTTTCG+TGG | + | tig0016220:175691-175710 | None:intergenic | 35.0% |
| CATTAACATGCCCTTCAAAT+TGG | - | tig0016220:175996-176015 | Msa1358040:intron | 35.0% | |
| TCCTGAACAACCAATTTGAA+GGG | + | tig0016220:176009-176028 | None:intergenic | 35.0% | |
| ATCCTGAACAACCAATTTGA+AGG | + | tig0016220:176010-176029 | None:intergenic | 35.0% | |
| AAGAAATAGATTGGAACACG+CGG | - | tig0016220:176068-176087 | Msa1358040:intron | 35.0% | |
| TTCCTTCAATGACGACAATT+CGG | + | tig0016220:176118-176137 | None:intergenic | 35.0% | |
| ACGCAAAAGTGATTGTTTAG+AGG | - | tig0016220:176452-176471 | Msa1358040:five_prime_UTR | 35.0% | |
| GTGTAAGAACAGAAGGAGTT+AGG | + | tig0016220:171263-171282 | None:intergenic | 40.0% | |
| !! | TAGTTGGTGGAGTAGTTGTT+TGG | - | tig0016220:171396-171415 | Msa1358040:three_prime_UTR | 40.0% |
| !! | AGTTGGTGGAGTAGTTGTTT+GGG | - | tig0016220:171397-171416 | Msa1358040:three_prime_UTR | 40.0% |
| AATGGAGGAGTGAGAAGAAT+AGG | - | tig0016220:171494-171513 | Msa1358040:CDS | 40.0% | |
| !! | ATTGGTTCTGTTAGGTTCTG+AGG | - | tig0016220:171693-171712 | Msa1358040:intron | 40.0% |
| !! | TTGGTTCTGTTAGGTTCTGA+GGG | - | tig0016220:171694-171713 | Msa1358040:intron | 40.0% |
| !! | TTGGTGTTGTCAATAGTTCC+TGG | - | tig0016220:172045-172064 | Msa1358040:intron | 40.0% |
| TCAATAGTTCCTGGTGACAT+TGG | - | tig0016220:172054-172073 | Msa1358040:intron | 40.0% | |
| CGGTTCAAGATGGAAATTGT+CGG | - | tig0016220:172106-172125 | Msa1358040:CDS | 40.0% | |
| TTCAAGATGGAAATTGTCGG+TGG | - | tig0016220:172109-172128 | Msa1358040:CDS | 40.0% | |
| TCAAGATGGAAATTGTCGGT+GGG | - | tig0016220:172110-172129 | Msa1358040:CDS | 40.0% | |
| AAATTGTCGGTGGGAGAATT+CGG | - | tig0016220:172119-172138 | Msa1358040:CDS | 40.0% | |
| !!! | TCGTTGATTTTTCCGGTCTT+TGG | + | tig0016220:172174-172193 | None:intergenic | 40.0% |
| TCACCATGAGAATTCCTGAT+GGG | + | tig0016220:172402-172421 | None:intergenic | 40.0% | |
| ATCACCATGAGAATTCCTGA+TGG | + | tig0016220:172403-172422 | None:intergenic | 40.0% | |
| TCAAGGAACCAATTCAGCAA+CGG | - | tig0016220:172784-172803 | Msa1358040:CDS | 40.0% | |
| GATAGATTGCGTACTGAGTA+AGG | + | tig0016220:172962-172981 | None:intergenic | 40.0% | |
| ! | TTCCTGTTTCTCTGCATAAC+AGG | - | tig0016220:173062-173081 | Msa1358040:CDS | 40.0% |
| ATCCTGTTATGCAGAGAAAC+AGG | + | tig0016220:173067-173086 | None:intergenic | 40.0% | |
| TTTCTCAGTCCAATTTCGCA+GGG | + | tig0016220:173177-173196 | None:intergenic | 40.0% | |
| ! | TTTTCTCAGTCCAATTTCGC+AGG | + | tig0016220:173178-173197 | None:intergenic | 40.0% |
| !! | AACTGGAACAAACTGGTTTG+TGG | + | tig0016220:173217-173236 | None:intergenic | 40.0% |
| AGTATGGGCGATTCAACAAA+CGG | - | tig0016220:173348-173367 | Msa1358040:CDS | 40.0% | |
| TTCTCAAAATGCCCTTTCCA+AGG | - | tig0016220:173371-173390 | Msa1358040:CDS | 40.0% | |
| TTGGGAACTTTCCTTGGAAA+GGG | + | tig0016220:173385-173404 | None:intergenic | 40.0% | |
| AGACAGAATGTGACAATGTC+AGG | - | tig0016220:173583-173602 | Msa1358040:CDS | 40.0% | |
| GTCTAAACATTCCAATGGAC+AGG | - | tig0016220:173836-173855 | Msa1358040:CDS | 40.0% | |
| TTTATCGTGTTCCTGTCCAT+TGG | + | tig0016220:173850-173869 | None:intergenic | 40.0% | |
| ! | AGCATTGGATGATCTTGTCA+AGG | - | tig0016220:173932-173951 | Msa1358040:CDS | 40.0% |
| CTCAAACAAGTGTGTCTCTT+TGG | + | tig0016220:173970-173989 | None:intergenic | 40.0% | |
| GGGAAATCGAAATGTATAGG+AGG | - | tig0016220:174012-174031 | Msa1358040:CDS | 40.0% | |
| AATGTATAGGAGGGACAAAG+AGG | - | tig0016220:174022-174041 | Msa1358040:CDS | 40.0% | |
| CTAGCTTATGTACAAGCTTG+TGG | + | tig0016220:174106-174125 | None:intergenic | 40.0% | |
| TCAATGTCATTCATAGCAGC+AGG | + | tig0016220:174182-174201 | None:intergenic | 40.0% | |
| CCTCCTCTAATCTTCTGATA+TGG | + | tig0016220:174292-174311 | None:intergenic | 40.0% | |
| CCATATCAGAAGATTAGAGG+AGG | - | tig0016220:174289-174308 | Msa1358040:CDS | 40.0% | |
| GGAGATGGAAAAACAAGTAC+AGG | - | tig0016220:174310-174329 | Msa1358040:CDS | 40.0% | |
| TCATTTGCATTGAGAGTCTC+TGG | + | tig0016220:174469-174488 | None:intergenic | 40.0% | |
| GCGTCTACAGAAAAATCTAG+TGG | - | tig0016220:174550-174569 | Msa1358040:CDS | 40.0% | |
| TAGTTGACTGAAGCTCTTCT+TGG | + | tig0016220:174595-174614 | None:intergenic | 40.0% | |
| GTCAACTAAAGCCAATTACG+AGG | - | tig0016220:174607-174626 | Msa1358040:CDS | 40.0% | |
| !!! | CTTCTGATTTTCGAGTTGCA+TGG | + | tig0016220:174714-174733 | None:intergenic | 40.0% |
| CTCGAAAATCAGAAGAAGCT+TGG | - | tig0016220:174719-174738 | Msa1358040:intron | 40.0% | |
| CGAAAATCAGAAGAAGCTTG+GGG | - | tig0016220:174721-174740 | Msa1358040:intron | 40.0% | |
| AGCTTGGGGAACAAGTTAAT+AGG | - | tig0016220:174735-174754 | Msa1358040:intron | 40.0% | |
| GCTTGGGGAACAAGTTAATA+GGG | - | tig0016220:174736-174755 | Msa1358040:intron | 40.0% | |
| CACAATTGCGTCATTGAAGA+AGG | - | tig0016220:174946-174965 | Msa1358040:CDS | 40.0% | |
| ! | CAGCATTGAGAAGAGATTCA+GGG | - | tig0016220:175186-175205 | Msa1358040:intron | 40.0% |
| AAAGTCAAAGGAAACTGCCT+TGG | - | tig0016220:175502-175521 | Msa1358040:CDS | 40.0% | |
| ! | TCAGAACGTTACTTTACACG+AGG | - | tig0016220:175610-175629 | Msa1358040:CDS | 40.0% |
| ! | TCAGAACGTTACTTTACACG+AGG | - | tig0016220:175610-175629 | Msa1358040:CDS | 40.0% |
| AATGAGTCTCAAATTTGCCG+AGG | - | tig0016220:176191-176210 | Msa1358040:CDS | 40.0% | |
| GACACTCTTGAGGTTTCTTA+CGG | + | tig0016220:176247-176266 | None:intergenic | 40.0% | |
| !! | AAACCTCAAGAGTGTCCATA+AGG | - | tig0016220:176251-176270 | Msa1358040:five_prime_UTR | 40.0% |
| !! | AACCTCAAGAGTGTCCATAA+GGG | - | tig0016220:176252-176271 | Msa1358040:five_prime_UTR | 40.0% |
| ACGTAGCGTGTAAGAACAGA+AGG | + | tig0016220:171270-171289 | None:intergenic | 45.0% | |
| ACAATCAGGGGTAGATGCAT+TGG | - | tig0016220:172026-172045 | Msa1358040:intron | 45.0% | |
| GAGAAAGCTACGGTTCAAGA+TGG | - | tig0016220:172096-172115 | Msa1358040:CDS | 45.0% | |
| TTATCAAAAGCTAGCGCGGT+CGG | - | tig0016220:172315-172334 | Msa1358040:intron | 45.0% | |
| ATGGGAAGAGAGACATGAGA+GGG | + | tig0016220:172384-172403 | None:intergenic | 45.0% | |
| CTTCCCATCAGGAATTCTCA+TGG | - | tig0016220:172396-172415 | Msa1358040:CDS | 45.0% | |
| ! | TCAAGTTCTGATGACAGCTC+TGG | - | tig0016220:173141-173160 | Msa1358040:CDS | 45.0% |
| GTTGATACTCCCTGCGAAAT+TGG | - | tig0016220:173165-173184 | Msa1358040:CDS | 45.0% | |
| !! | GAACAAACTGGTTTGTGGTG+GGG | + | tig0016220:173212-173231 | None:intergenic | 45.0% |
| !! | GGAACAAACTGGTTTGTGGT+GGG | + | tig0016220:173213-173232 | None:intergenic | 45.0% |
| !! | TGGAACAAACTGGTTTGTGG+TGG | + | tig0016220:173214-173233 | None:intergenic | 45.0% |
| ! | GAGGCATTAACAGCAGCATT+TGG | + | tig0016220:173261-173280 | None:intergenic | 45.0% |
| !! | TAAATCATGCATCGGTGTCG+AGG | + | tig0016220:173280-173299 | None:intergenic | 45.0% |
| TCAGAGCTCGGGTTAAGTAT+GGG | - | tig0016220:173333-173352 | Msa1358040:CDS | 45.0% | |
| CTTGGGAACTTTCCTTGGAA+AGG | + | tig0016220:173386-173405 | None:intergenic | 45.0% | |
| TTCCAAGGAAAGTTCCCAAG+AGG | - | tig0016220:173386-173405 | Msa1358040:CDS | 45.0% | |
| GAGTCTCTCCATCTCCAAAT+GGG | + | tig0016220:173415-173434 | None:intergenic | 45.0% | |
| TGAGTCTCTCCATCTCCAAA+TGG | + | tig0016220:173416-173435 | None:intergenic | 45.0% | |
| CAAATCTGAACTCGCTGCTT+TGG | - | tig0016220:173434-173453 | Msa1358040:CDS | 45.0% | |
| ACATGGAACTACAGACCCTT+AGG | - | tig0016220:173478-173497 | Msa1358040:CDS | 45.0% | |
| AAAGGAAAGCAAAAGAGGGC+AGG | - | tig0016220:173512-173531 | Msa1358040:CDS | 45.0% | |
| ACGATGCCAAAGTGAGAAAC+AGG | - | tig0016220:173625-173644 | Msa1358040:CDS | 45.0% | |
| ! | CTGTGACCTGTTTCTCACTT+TGG | + | tig0016220:173634-173653 | None:intergenic | 45.0% |
| AGTGAGAAACAGGTCACAGT+TGG | - | tig0016220:173635-173654 | Msa1358040:CDS | 45.0% | |
| AACAGGTCACAGTTGGAAAG+TGG | - | tig0016220:173642-173661 | Msa1358040:CDS | 45.0% | |
| GCGGAGATGAACACTCATAT+TGG | + | tig0016220:174160-174179 | None:intergenic | 45.0% | |
| ATGTCATTCATAGCAGCAGG+CGG | + | tig0016220:174179-174198 | None:intergenic | 45.0% | |
| CAGAAGATTAGAGGAGGAGA+TGG | - | tig0016220:174295-174314 | Msa1358040:CDS | 45.0% | |
| TACAGCTGAAAGGCTTCAAG+AGG | - | tig0016220:174439-174458 | Msa1358040:CDS | 45.0% | |
| TAGACGCAGTTCACTTGCTT+CGG | + | tig0016220:174537-174556 | None:intergenic | 45.0% | |
| TCAGATACAGCAGATGTTGG+TGG | - | tig0016220:174673-174692 | Msa1358040:intron | 45.0% | |
| TGCGTCATTGAAGAAGGAAG+CGG | - | tig0016220:174952-174971 | Msa1358040:CDS | 45.0% | |
| CCTGAATCTCTTCTCAATGC+TGG | + | tig0016220:175188-175207 | None:intergenic | 45.0% | |
| ! | CCAGCATTGAGAAGAGATTC+AGG | - | tig0016220:175185-175204 | Msa1358040:intron | 45.0% |
| TCAGGGCCTGATAAAGTCAA+AGG | - | tig0016220:175490-175509 | Msa1358040:intron | 45.0% | |
| GGAACTTCAGAGCAGAATTG+TGG | - | tig0016220:175559-175578 | Msa1358040:CDS | 45.0% | |
| GGAACTTCAGAGCAGAATTG+TGG | - | tig0016220:175559-175578 | Msa1358040:CDS | 45.0% | |
| GCCCTTCAAATTGGTTGTTC+AGG | - | tig0016220:176005-176024 | Msa1358040:intron | 45.0% | |
| GACCGAATTGTCGTCATTGA+AGG | - | tig0016220:176113-176132 | Msa1358040:intron | 45.0% | |
| TTGTCTTTCACCTTCGACCT+CGG | + | tig0016220:176211-176230 | None:intergenic | 45.0% | |
| GAGAAAACTCTCAGCCCTTA+TGG | + | tig0016220:176269-176288 | None:intergenic | 45.0% | |
| GCAGGCTCCAATATATCAAG+AGG | + | tig0016220:176291-176310 | None:intergenic | 45.0% | |
| !! | AAAAAAACTATTATTAATAA+AGG | + | tig0016220:171793-171812 | None:intergenic | 5.0% |
| TCGGTGGTTGATCAACTCGT+TGG | + | tig0016220:171313-171332 | None:intergenic | 50.0% | |
| !! | GTTGGTCTTCCAATGTCACC+AGG | + | tig0016220:172066-172085 | None:intergenic | 50.0% |
| GGGGTTATCAAAAGCTAGCG+CGG | - | tig0016220:172311-172330 | Msa1358040:intron | 50.0% | |
| TATCAAAAGCTAGCGCGGTC+GGG | - | tig0016220:172316-172335 | Msa1358040:intron | 50.0% | |
| AGAGACATGAGAGGGCTTTG+TGG | + | tig0016220:172376-172395 | None:intergenic | 50.0% | |
| GATGGGAAGAGAGACATGAG+AGG | + | tig0016220:172385-172404 | None:intergenic | 50.0% | |
| CTCATGTCTCTCTTCCCATC+AGG | - | tig0016220:172385-172404 | Msa1358040:intron | 50.0% | |
| CTGTATCGCCGTTGCTGAAT+TGG | + | tig0016220:172795-172814 | None:intergenic | 50.0% | |
| GGGCCATAACTGGAACAAAC+TGG | + | tig0016220:173224-173243 | None:intergenic | 50.0% | |
| AGCAGCATTTGGAGATTCCG+CGG | + | tig0016220:173250-173269 | None:intergenic | 50.0% | |
| ! | TCGTCATCTAGCTCAGAGCT+CGG | - | tig0016220:173321-173340 | Msa1358040:CDS | 50.0% |
| CTCAGAGCTCGGGTTAAGTA+TGG | - | tig0016220:173332-173351 | Msa1358040:CDS | 50.0% | |
| TGCCTCTTGGGAACTTTCCT+TGG | + | tig0016220:173391-173410 | None:intergenic | 50.0% | |
| !! | TTCCCAAGAGGCATCCCATT+TGG | - | tig0016220:173398-173417 | Msa1358040:CDS | 50.0% |
| CTCCAAATGGGATGCCTCTT+GGG | + | tig0016220:173403-173422 | None:intergenic | 50.0% | |
| TCTCCAAATGGGATGCCTCT+TGG | + | tig0016220:173404-173423 | None:intergenic | 50.0% | |
| !! | AGAGGCATCCCATTTGGAGA+TGG | - | tig0016220:173404-173423 | Msa1358040:CDS | 50.0% |
| AAGAGGGCAGGATCTCATGA+AGG | - | tig0016220:173524-173543 | Msa1358040:CDS | 50.0% | |
| CAGGTCTTTCCACAAACGCA+TGG | - | tig0016220:173602-173621 | Msa1358040:CDS | 50.0% | |
| ! | TGAATTGGTTCTTGCCGTGC+AGG | - | tig0016220:173770-173789 | Msa1358040:CDS | 50.0% |
| TCTGCTCCAACATCTCTTCC+AGG | + | tig0016220:173797-173816 | None:intergenic | 50.0% | |
| GCTAGAGCAAAGCCAATTGC+AGG | - | tig0016220:174121-174140 | Msa1358040:CDS | 50.0% | |
| AGAACTCAAGGAGCAGTCAG+AGG | - | tig0016220:174226-174245 | Msa1358040:CDS | 50.0% | |
| GGTCTTTCGCAATGCTTCCT+CGG | + | tig0016220:174402-174421 | None:intergenic | 50.0% | |
| TGCTTCGGTCAATGCTCTCA+TGG | + | tig0016220:174522-174541 | None:intergenic | 50.0% | |
| GGACGCAACCAACTTTCTGA+TGG | - | tig0016220:175217-175236 | Msa1358040:intron | 50.0% | |
| TCAGAGCAGAATTGTGGAGC+TGG | - | tig0016220:175565-175584 | Msa1358040:CDS | 50.0% | |
| TGTGGAGCTGGAGAACAAAG+TGG | - | tig0016220:175577-175596 | Msa1358040:CDS | 50.0% | |
| TCAGAGCAGAATTGTGGAGC+TGG | - | tig0016220:175565-175584 | Msa1358040:CDS | 50.0% | |
| TGTGGAGCTGGAGAACAAAG+TGG | - | tig0016220:175577-175596 | Msa1358040:CDS | 50.0% | |
| GAACACGCGGACAATAGTCT+TGG | - | tig0016220:176081-176100 | Msa1358040:intron | 50.0% | |
| CTCAAATTTGCCGAGGTCGA+AGG | - | tig0016220:176198-176217 | Msa1358040:CDS | 50.0% | |
| AGCCCTTATGGACACTCTTG+AGG | + | tig0016220:176257-176276 | None:intergenic | 50.0% | |
| CTGCTACAGCTATACACTGC+AGG | + | tig0016220:176309-176328 | None:intergenic | 50.0% | |
| CTGCAGTGTATAGCTGTAGC+AGG | - | tig0016220:176307-176326 | Msa1358040:five_prime_UTR | 50.0% | |
| ATCAAAAGCTAGCGCGGTCG+GGG | - | tig0016220:172317-172336 | Msa1358040:intron | 55.0% | |
| ATTTGGAGATTCCGCGGCAC+GGG | + | tig0016220:173244-173263 | None:intergenic | 55.0% | |
| CATTTGGAGATTCCGCGGCA+CGG | + | tig0016220:173245-173264 | None:intergenic | 55.0% | |
| ! | CGTCATCTAGCTCAGAGCTC+GGG | - | tig0016220:173322-173341 | Msa1358040:CDS | 55.0% |
| TGGCATCGTCCATGCGTTTG+TGG | + | tig0016220:173614-173633 | None:intergenic | 55.0% | |
| CATCTCTTCCAGGTCCTGCA+CGG | + | tig0016220:173787-173806 | None:intergenic | 55.0% | |
| GCAGGACCTGGAAGAGATGT+TGG | - | tig0016220:173788-173807 | Msa1358040:CDS | 55.0% | |
| !! | CAATGCTTCCTCGGCTTGGA+TGG | + | tig0016220:174393-174412 | None:intergenic | 55.0% |
| TTCGCAATGCTTCCTCGGCT+TGG | + | tig0016220:174397-174416 | None:intergenic | 55.0% | |
| GGAGCTGGAGAACAAAGTGG+AGG | - | tig0016220:175580-175599 | Msa1358040:CDS | 55.0% | |
| GGAGCTGGAGAACAAAGTGG+AGG | - | tig0016220:175580-175599 | Msa1358040:CDS | 55.0% | |
| ! | CACGCGGACAATAGTCTTGG+TGG | - | tig0016220:176084-176103 | Msa1358040:intron | 55.0% |
| GCAGGTGTACTTTGCAGCAG+TGG | - | tig0016220:176325-176344 | Msa1358040:five_prime_UTR | 55.0% | |
| ! | CTGAACTCGCTGCTTTGGCG+AGG | - | tig0016220:173439-173458 | Msa1358040:CDS | 60.0% |
| GCACGTGGATGTGTCGGACA+TGG | - | tig0016220:173461-173480 | Msa1358040:CDS | 60.0% | |
| GCAAAGAGCCATCCAAGCCG+AGG | - | tig0016220:174382-174401 | Msa1358040:CDS | 60.0% | |
| TCCAGTTATGGCCCGTGCCG+CGG | - | tig0016220:173230-173249 | Msa1358040:CDS | 65.0% | |
| GGCGAGGCACGTGGATGTGT+CGG | - | tig0016220:173455-173474 | Msa1358040:CDS | 65.0% | |
| GGTTCTTGCCGTGCAGGACC+TGG | - | tig0016220:173776-173795 | Msa1358040:CDS | 65.0% | |
| TCCGCGGCACGGGCCATAAC+TGG | + | tig0016220:173234-173253 | None:intergenic | 70.0% | |
| ! | CGCTGCTTTGGCGAGGCACG+TGG | - | tig0016220:173446-173465 | Msa1358040:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0016220 | gene | 171154 | 176568 | 171154 | ID=Msa1358040;Name=Msa1358040 |
| tig0016220 | mRNA | 171154 | 176568 | 171154 | ID=Msa1358040-mRNA-1;Parent=Msa1358040;Name=Msa1358040-mRNA-1;_AED=0.04;_eAED=0.04;_QI=324|1|1|1|1|1|9|290|1091 |
| tig0016220 | exon | 171154 | 171695 | 171154 | ID=Msa1358040-mRNA-1:exon:10605;Parent=Msa1358040-mRNA-1 |
| tig0016220 | exon | 171901 | 171981 | 171901 | ID=Msa1358040-mRNA-1:exon:10604;Parent=Msa1358040-mRNA-1 |
| tig0016220 | exon | 172091 | 172228 | 172091 | ID=Msa1358040-mRNA-1:exon:10603;Parent=Msa1358040-mRNA-1 |
| tig0016220 | exon | 172389 | 174638 | 172389 | ID=Msa1358040-mRNA-1:exon:10602;Parent=Msa1358040-mRNA-1 |
| tig0016220 | exon | 174879 | 174987 | 174879 | ID=Msa1358040-mRNA-1:exon:10601;Parent=Msa1358040-mRNA-1 |
| tig0016220 | exon | 175104 | 175147 | 175104 | ID=Msa1358040-mRNA-1:exon:10600;Parent=Msa1358040-mRNA-1 |
| tig0016220 | exon | 175288 | 175410 | 175288 | ID=Msa1358040-mRNA-1:exon:10599;Parent=Msa1358040-mRNA-1 |
| tig0016220 | exon | 175501 | 175701 | 175501 | ID=Msa1358040-mRNA-1:exon:10598;Parent=Msa1358040-mRNA-1 |
| tig0016220 | exon | 176167 | 176568 | 176167 | ID=Msa1358040-mRNA-1:exon:10597;Parent=Msa1358040-mRNA-1 |
| tig0016220 | five_prime_UTR | 176245 | 176568 | 176245 | ID=Msa1358040-mRNA-1:five_prime_utr;Parent=Msa1358040-mRNA-1 |
| tig0016220 | CDS | 176167 | 176244 | 176167 | ID=Msa1358040-mRNA-1:cds;Parent=Msa1358040-mRNA-1 |
| tig0016220 | CDS | 175501 | 175701 | 175501 | ID=Msa1358040-mRNA-1:cds;Parent=Msa1358040-mRNA-1 |
| tig0016220 | CDS | 175288 | 175410 | 175288 | ID=Msa1358040-mRNA-1:cds;Parent=Msa1358040-mRNA-1 |
| tig0016220 | CDS | 175104 | 175147 | 175104 | ID=Msa1358040-mRNA-1:cds;Parent=Msa1358040-mRNA-1 |
| tig0016220 | CDS | 174879 | 174987 | 174879 | ID=Msa1358040-mRNA-1:cds;Parent=Msa1358040-mRNA-1 |
| tig0016220 | CDS | 172389 | 174638 | 172389 | ID=Msa1358040-mRNA-1:cds;Parent=Msa1358040-mRNA-1 |
| tig0016220 | CDS | 172091 | 172228 | 172091 | ID=Msa1358040-mRNA-1:cds;Parent=Msa1358040-mRNA-1 |
| tig0016220 | CDS | 171901 | 171981 | 171901 | ID=Msa1358040-mRNA-1:cds;Parent=Msa1358040-mRNA-1 |
| tig0016220 | CDS | 171444 | 171695 | 171444 | ID=Msa1358040-mRNA-1:cds;Parent=Msa1358040-mRNA-1 |
| tig0016220 | three_prime_UTR | 171154 | 171443 | 171154 | ID=Msa1358040-mRNA-1:three_prime_utr;Parent=Msa1358040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
