AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0316850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0316850 MtrunA17_Chr2g0289741 92.623 122 8 1 1 122 2 122 5.64e-81 235
Msa0316850 MtrunA17_Chr6g0459441 39.175 97 58 1 25 121 24 119 2.14e-23 89.4
Msa0316850 MtrunA17_Chr2g0323021 39.091 110 63 4 14 122 13 119 5.50e-22 86.7
Msa0316850 MtrunA17_Chr3g0132511 37.273 110 67 2 14 122 13 121 3.10e-18 76.6
Msa0316850 MtrunA17_Chr3g0132441 36.752 117 70 3 6 122 7 119 4.11e-18 75.9
Msa0316850 MtrunA17_Chr8g0360371 35.088 114 70 3 11 121 7 119 9.48e-18 76.6
Msa0316850 MtrunA17_Chr3g0132701 37.273 110 67 2 14 122 13 121 1.04e-17 75.5
Msa0316850 MtrunA17_Chr1g0196801 33.333 102 66 2 20 121 16 115 2.83e-17 73.2
Msa0316850 MtrunA17_Chr3g0132431 35.780 109 68 2 14 122 13 119 2.90e-17 73.6
Msa0316850 MtrunA17_Chr6g0481491 34.821 112 71 2 11 122 12 121 2.95e-16 71.2
Msa0316850 MtrunA17_Chr8g0335571 34.677 124 74 4 1 122 1 119 6.37e-15 67.8
Msa0316850 MtrunA17_Chr8g0335531 34.783 115 64 4 11 121 11 118 1.70e-14 66.2
Msa0316850 MtrunA17_Chr8g0385021 32.759 116 73 3 10 121 6 120 3.27e-14 66.6
Msa0316850 MtrunA17_Chr3g0132411 31.967 122 81 2 1 122 39 158 3.28e-14 65.1
Msa0316850 MtrunA17_Chr4g0041811 31.818 110 70 2 16 121 21 129 3.31e-14 66.2
Msa0316850 MtrunA17_Chr2g0324721 35.484 93 57 2 29 119 29 120 3.36e-14 65.9
Msa0316850 MtrunA17_Chr4g0040291 35.417 96 59 2 29 122 27 121 4.43e-14 65.1
Msa0316850 MtrunA17_Chr2g0324711 34.167 120 74 3 6 121 2 120 4.95e-14 67.0
Msa0316850 MtrunA17_Chr2g0331181 32.203 118 72 3 10 122 10 124 5.33e-14 65.1
Msa0316850 MtrunA17_Chr2g0319611 37.113 97 56 2 28 119 27 123 6.39e-14 65.9
Msa0316850 MtrunA17_Chr1g0150131 31.452 124 79 4 3 121 1 123 1.05e-13 63.9
Msa0316850 MtrunA17_Chr8g0387804 31.092 119 73 4 7 122 14 126 1.23e-13 62.8
Msa0316850 MtrunA17_Chr6g0453921 33.613 119 72 4 6 122 20 133 1.46e-13 63.5
Msa0316850 MtrunA17_Chr5g0440711 31.579 114 76 2 10 122 13 125 7.50e-13 61.2
Msa0316850 MtrunA17_Chr7g0253761 28.571 112 79 1 10 121 9 119 1.23e-12 61.2
Msa0316850 MtrunA17_Chr8g0385031 31.897 116 74 3 10 121 6 120 1.24e-12 62.8
Msa0316850 MtrunA17_Chr7g0253641 29.464 112 78 1 10 121 9 119 1.83e-12 61.6
Msa0316850 MtrunA17_Chr1g0205701 31.624 117 75 4 9 122 7 121 2.45e-12 60.5
Msa0316850 MtrunA17_Chr4g0064041 29.032 124 83 2 2 121 4 126 7.51e-12 60.8
Msa0316850 MtrunA17_Chr7g0253631 28.696 115 81 1 7 121 6 119 2.38e-11 58.5
Msa0316850 MtrunA17_Chr8g0380901 31.356 118 73 4 9 122 6 119 3.84e-11 56.2
Msa0316850 MtrunA17_Chr7g0253681 28.704 108 74 2 8 113 6 112 4.12e-11 57.0
Msa0316850 MtrunA17_Chr7g0253701 32.184 87 58 1 27 113 26 111 4.27e-11 57.0
Msa0316850 MtrunA17_Chr7g0253671 32.184 87 58 1 27 113 26 111 4.27e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0316850 AT3G27200.1 36.066 122 74 3 1 121 1 119 3.56e-21 83.6
Msa0316850 AT2G32300.1 34.483 116 72 2 6 121 8 119 8.76e-20 82.0
Msa0316850 AT2G32300.2 34.483 116 72 2 6 121 38 149 1.37e-19 82.0
Msa0316850 AT5G07475.1 36.975 119 65 4 6 122 15 125 1.88e-18 77.0
Msa0316850 AT2G26720.1 33.051 118 77 2 6 122 8 124 3.77e-16 71.2
Msa0316850 AT4G27520.1 40.000 95 54 2 29 121 33 126 6.38e-16 72.4
Msa0316850 AT4G30590.1 33.846 130 68 5 5 121 2 126 1.34e-15 69.7
Msa0316850 AT3G17675.1 31.034 116 78 2 6 121 12 125 1.18e-14 65.9
Msa0316850 AT4G31840.1 32.540 126 79 4 1 121 1 125 1.34e-14 66.6
Msa0316850 AT2G25060.1 34.454 119 70 5 8 121 14 129 1.89e-14 66.2
Msa0316850 AT3G20570.1 33.929 112 69 5 11 119 15 124 1.93e-14 66.6
Msa0316850 AT5G53870.1 31.579 95 62 2 29 121 32 125 4.42e-14 67.4
Msa0316850 AT4G12880.1 33.043 115 70 4 12 121 11 123 6.57e-14 63.9
Msa0316850 AT4G28365.1 35.417 96 59 2 29 122 31 125 8.40e-14 65.1
Msa0316850 AT5G53870.2 31.183 93 61 2 29 119 32 123 2.14e-12 62.8
Msa0316850 AT4G32490.1 29.839 124 83 3 1 121 4 126 2.29e-12 61.6
Msa0316850 AT3G60280.1 33.333 93 60 1 29 121 26 116 2.96e-12 61.2
Msa0316850 AT1G17800.1 31.496 127 73 4 8 122 11 135 3.00e-12 59.7
Msa0316850 AT1G72230.1 33.043 115 71 3 7 121 7 115 4.21e-12 60.1
Msa0316850 AT1G45063.1 36.842 95 58 2 29 121 151 245 6.48e-12 61.2
Msa0316850 AT3G60270.1 31.373 102 68 1 21 122 20 119 9.10e-12 59.3
Msa0316850 AT1G45063.2 37.975 79 49 0 43 121 167 245 1.19e-11 60.1
Msa0316850 AT1G45063.2 28.333 120 84 2 3 121 6 124 6.92e-11 58.2
Msa0316850 AT5G25090.1 25.600 125 88 2 1 121 1 124 1.88e-11 58.5
Msa0316850 AT5G57920.1 35.897 78 49 1 44 121 45 121 1.95e-11 58.5
Msa0316850 AT5G57920.2 35.897 78 49 1 44 121 44 120 2.39e-11 58.2
Msa0316850 AT5G57920.3 35.897 78 49 1 44 121 77 153 3.38e-11 58.2
Msa0316850 AT3G53330.1 35.897 78 50 0 44 121 207 284 9.15e-11 57.8

Find 39 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCTTCTGGAAGGGTCTTC+AGG 0.183157 2_4:-14148912 Msa0316850:CDS
GATATCTTATCTTGGTCTTC+TGG 0.246012 2_4:-14148925 Msa0316850:CDS
CCTTCAGTGTACATCTTGAT+AGG 0.277915 2_4:+14147878 None:intergenic
GTCTTCTGGAAGGGTCTTCA+GGG 0.324887 2_4:-14148911 Msa0316850:CDS
CAAGATAAGATATCTGAGTT+TGG 0.386736 2_4:+14148934 None:intergenic
TGGTGGTTAGTATGTGTATA+TGG 0.401517 2_4:+14149093 None:intergenic
TGTTGTGGTGGCTATGATCA+TGG 0.446485 2_4:-14149010 Msa0316850:CDS
TCTGGAAGGGTCTTCAGGGT+TGG 0.446855 2_4:-14148907 Msa0316850:CDS
TATTGTTGGTGTTATTGTTG+TGG 0.450722 2_4:-14149025 Msa0316850:CDS
CAAACTCAGATATCTTATCT+TGG 0.452486 2_4:-14148933 Msa0316850:CDS
TCTTATCTTGGTCTTCTGGA+AGG 0.465478 2_4:-14148921 Msa0316850:CDS
AGTAGAGTTAATAGAAGTAA+CGG 0.479685 2_4:+14149124 None:intergenic
CTTATTCCTTCCTTCTCAAG+TGG 0.483668 2_4:+14147842 None:intergenic
GACTCTGAGAATTGCAAGAA+TGG 0.490223 2_4:-14147803 Msa0316850:CDS
AAGGAAAGAAAAGTGGTTGT+TGG 0.496166 2_4:-14149205 Msa0316850:five_prime_UTR
CATGTGGTGGGAGGAGATCA+TGG 0.500069 2_4:-14148964 Msa0316850:CDS
CTTATCTTGGTCTTCTGGAA+GGG 0.509677 2_4:-14148920 Msa0316850:CDS
TGTTGGTGTTATTGTTGTGG+TGG 0.528689 2_4:-14149022 Msa0316850:CDS
TGGTGGGAGGAGATCATGGA+TGG 0.532106 2_4:-14148960 Msa0316850:CDS
TTATTCCTTCCTTCTCAAGT+GGG 0.533743 2_4:+14147843 None:intergenic
CTTCAGTGTACATCTTGATA+GGG 0.537862 2_4:+14147879 None:intergenic
GGTGATGAAGGAAAGAAAAG+TGG 0.538846 2_4:-14149212 Msa0316850:five_prime_UTR
AATATGGGAGGGATTATTGT+TGG 0.542239 2_4:-14149039 Msa0316850:CDS
ACATACAATCCCACTTGAGA+AGG 0.548716 2_4:-14147852 Msa0316850:CDS
TATACTAATGAAGATGAAGA+TGG 0.573928 2_4:+14149070 None:intergenic
AGCACAAGGATTAGTTGCAG+AGG 0.587702 2_4:-14147942 Msa0316850:CDS
TGGTCTCAAACTCAATGTTG+AGG 0.612269 2_4:-14147783 None:intergenic
ACAATCCCACTTGAGAAGGA+AGG 0.616800 2_4:-14147848 Msa0316850:CDS
AAGTGAGGTACATCATGTGG+TGG 0.620896 2_4:-14148977 Msa0316850:CDS
TTTGCGTACTCAGCAGCACA+AGG 0.622683 2_4:-14147956 Msa0316850:CDS
GGTGGCTATGATCATGGATG+TGG 0.628192 2_4:-14149004 Msa0316850:CDS
CCTATCAAGATGTACACTGA+AGG 0.642758 2_4:-14147878 Msa0316850:CDS
AATGAAGATGAAGATGGTGG+TGG 0.643513 2_4:+14149076 None:intergenic
GAGGTACATCATGTGGTGGG+AGG 0.644833 2_4:-14148973 Msa0316850:CDS
AGTGAGGTACATCATGTGGT+GGG 0.661400 2_4:-14148976 Msa0316850:CDS
AACAAGTGAGGTACATCATG+TGG 0.692455 2_4:-14148980 Msa0316850:CDS
GGTGGGAGGAGATCATGGAT+GGG 0.702174 2_4:-14148959 Msa0316850:CDS
CATGGATGTGGCAACAAGTG+AGG 0.703901 2_4:-14148992 Msa0316850:CDS
ACTAATGAAGATGAAGATGG+TGG 0.716684 2_4:+14149073 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATTTTATTTTATTAA+AGG + chr2_4:14148501-14148520 None:intergenic 0.0%
!!! ATTTTATTTTATTTTATTAA+AGG + chr2_4:14148501-14148520 None:intergenic 0.0%
!!! TTGTTTTATACAAAAAATTT+AGG - chr2_4:14148310-14148329 Msa0316850:intron 10.0%
!!! TATTTTATTATATTTTTGAC+AGG + chr2_4:14148559-14148578 None:intergenic 10.0%
!!! ATAATATTATTACTTTTTGT+TGG + chr2_4:14148653-14148672 None:intergenic 10.0%
!!! TTGTTTTATACAAAAAATTT+AGG - chr2_4:14148310-14148329 Msa0316850:intron 10.0%
!!! TATTTTATTATATTTTTGAC+AGG + chr2_4:14148559-14148578 None:intergenic 10.0%
!!! ATAATATTATTACTTTTTGT+TGG + chr2_4:14148653-14148672 None:intergenic 10.0%
!! TTAGTATAGAAAAATGAATA+TGG - chr2_4:14147947-14147966 Msa0316850:CDS 15.0%
!! TAGTATAGAAAAATGAATAT+GGG - chr2_4:14147948-14147967 Msa0316850:CDS 15.0%
!! TTTACATATTTATTCTTGAA+CGG + chr2_4:14148526-14148545 None:intergenic 15.0%
!!! ATGACAAACATTTTATTTAT+GGG - chr2_4:14149018-14149037 Msa0316850:CDS 15.0%
!! TTAGTATAGAAAAATGAATA+TGG - chr2_4:14147947-14147966 Msa0316850:CDS 15.0%
!! TAGTATAGAAAAATGAATAT+GGG - chr2_4:14147948-14147967 Msa0316850:CDS 15.0%
!! TTTACATATTTATTCTTGAA+CGG + chr2_4:14148526-14148545 None:intergenic 15.0%
!!! ATGACAAACATTTTATTTAT+GGG - chr2_4:14149018-14149037 Msa0316850:CDS 15.0%
!!! ATAATTTTTTTTGCTGAGAA+TGG + chr2_4:14147829-14147848 None:intergenic 20.0%
!! AAGAAAAAGACATACATATT+TGG + chr2_4:14148124-14148143 None:intergenic 20.0%
!! ATGAAACTTACATGATTAAA+GGG + chr2_4:14148198-14148217 None:intergenic 20.0%
!!! AAAACAGCATATTTTATGAA+AGG + chr2_4:14148225-14148244 None:intergenic 20.0%
!!! TATACAAAAAATTTAGGATG+AGG - chr2_4:14148316-14148335 Msa0316850:intron 20.0%
!! ATTGATTATTACCAATTGAT+TGG - chr2_4:14148445-14148464 Msa0316850:intron 20.0%
!! AGAAAAATCTATCTATTCTA+TGG + chr2_4:14148733-14148752 None:intergenic 20.0%
!!! AAGTGAAATTCAATTTGTTT+TGG - chr2_4:14148764-14148783 Msa0316850:intron 20.0%
!! ATGTAAATTCTTAAAGAAGT+TGG - chr2_4:14148903-14148922 Msa0316850:CDS 20.0%
!! AGAAAAAGTTTAGATTAAGA+GGG + chr2_4:14148957-14148976 None:intergenic 20.0%
!!! GATGACAAACATTTTATTTA+TGG - chr2_4:14149017-14149036 Msa0316850:CDS 20.0%
!!! ATAATTTTTTTTGCTGAGAA+TGG + chr2_4:14147829-14147848 None:intergenic 20.0%
!! AAGAAAAAGACATACATATT+TGG + chr2_4:14148124-14148143 None:intergenic 20.0%
!! ATGAAACTTACATGATTAAA+GGG + chr2_4:14148198-14148217 None:intergenic 20.0%
!!! AAAACAGCATATTTTATGAA+AGG + chr2_4:14148225-14148244 None:intergenic 20.0%
!!! TATACAAAAAATTTAGGATG+AGG - chr2_4:14148316-14148335 Msa0316850:intron 20.0%
!! ATTGATTATTACCAATTGAT+TGG - chr2_4:14148445-14148464 Msa0316850:intron 20.0%
!! AGAAAAATCTATCTATTCTA+TGG + chr2_4:14148733-14148752 None:intergenic 20.0%
!!! AAGTGAAATTCAATTTGTTT+TGG - chr2_4:14148764-14148783 Msa0316850:intron 20.0%
!! ATGTAAATTCTTAAAGAAGT+TGG - chr2_4:14148903-14148922 Msa0316850:CDS 20.0%
!! AGAAAAAGTTTAGATTAAGA+GGG + chr2_4:14148957-14148976 None:intergenic 20.0%
!!! GATGACAAACATTTTATTTA+TGG - chr2_4:14149017-14149036 Msa0316850:CDS 20.0%
! AGTAGAGTTAATAGAAGTAA+CGG + chr2_4:14147881-14147900 None:intergenic 25.0%
! TATACTAATGAAGATGAAGA+TGG + chr2_4:14147935-14147954 None:intergenic 25.0%
! TATAGAAAAATGAATATGGG+AGG - chr2_4:14147951-14147970 Msa0316850:CDS 25.0%
! ATAGAAAAATGAATATGGGA+GGG - chr2_4:14147952-14147971 Msa0316850:CDS 25.0%
! CATGAAACTTACATGATTAA+AGG + chr2_4:14148199-14148218 None:intergenic 25.0%
! TAGATTCAAAATGGAATGAT+TGG - chr2_4:14148272-14148291 Msa0316850:intron 25.0%
!! AAAAAATTTAGGATGAGGAA+TGG - chr2_4:14148321-14148340 Msa0316850:intron 25.0%
! ATTATAGACATCCAATCAAT+TGG + chr2_4:14148459-14148478 None:intergenic 25.0%
! TAAATTCTTAAAGAAGTTGG+TGG - chr2_4:14148906-14148925 Msa0316850:CDS 25.0%
! GAGAAAAAGTTTAGATTAAG+AGG + chr2_4:14148958-14148977 None:intergenic 25.0%
!!! AAACATTTTATTTATGGGCA+GGG - chr2_4:14149023-14149042 Msa0316850:CDS 25.0%
! AGTAGAGTTAATAGAAGTAA+CGG + chr2_4:14147881-14147900 None:intergenic 25.0%
! TATACTAATGAAGATGAAGA+TGG + chr2_4:14147935-14147954 None:intergenic 25.0%
! TATAGAAAAATGAATATGGG+AGG - chr2_4:14147951-14147970 Msa0316850:CDS 25.0%
! ATAGAAAAATGAATATGGGA+GGG - chr2_4:14147952-14147971 Msa0316850:CDS 25.0%
! CATGAAACTTACATGATTAA+AGG + chr2_4:14148199-14148218 None:intergenic 25.0%
! TAGATTCAAAATGGAATGAT+TGG - chr2_4:14148272-14148291 Msa0316850:intron 25.0%
!! AAAAAATTTAGGATGAGGAA+TGG - chr2_4:14148321-14148340 Msa0316850:intron 25.0%
! ATTATAGACATCCAATCAAT+TGG + chr2_4:14148459-14148478 None:intergenic 25.0%
! TAAATTCTTAAAGAAGTTGG+TGG - chr2_4:14148906-14148925 Msa0316850:CDS 25.0%
! GAGAAAAAGTTTAGATTAAG+AGG + chr2_4:14148958-14148977 None:intergenic 25.0%
!!! AAACATTTTATTTATGGGCA+GGG - chr2_4:14149023-14149042 Msa0316850:CDS 25.0%
!! TATTGTTGGTGTTATTGTTG+TGG - chr2_4:14147977-14147996 Msa0316850:intron 30.0%
CAAGATAAGATATCTGAGTT+TGG + chr2_4:14148071-14148090 None:intergenic 30.0%
CAAACTCAGATATCTTATCT+TGG - chr2_4:14148069-14148088 Msa0316850:intron 30.0%
AACTTACATGATTAAAGGGT+GGG + chr2_4:14148194-14148213 None:intergenic 30.0%
AAACTTACATGATTAAAGGG+TGG + chr2_4:14148195-14148214 None:intergenic 30.0%
ATTCAAAATGGAATGATTGG+AGG - chr2_4:14148275-14148294 Msa0316850:intron 30.0%
TTGGATGTCTATAATGAGAA+AGG - chr2_4:14148464-14148483 Msa0316850:intron 30.0%
TAATGAGAAAGGAGAAATAG+AGG - chr2_4:14148475-14148494 Msa0316850:intron 30.0%
!! CAAACATTTTATTTATGGGC+AGG - chr2_4:14149022-14149041 Msa0316850:CDS 30.0%
!! TATTGTTGGTGTTATTGTTG+TGG - chr2_4:14147977-14147996 Msa0316850:intron 30.0%
CAAGATAAGATATCTGAGTT+TGG + chr2_4:14148071-14148090 None:intergenic 30.0%
CAAACTCAGATATCTTATCT+TGG - chr2_4:14148069-14148088 Msa0316850:intron 30.0%
AACTTACATGATTAAAGGGT+GGG + chr2_4:14148194-14148213 None:intergenic 30.0%
AAACTTACATGATTAAAGGG+TGG + chr2_4:14148195-14148214 None:intergenic 30.0%
ATTCAAAATGGAATGATTGG+AGG - chr2_4:14148275-14148294 Msa0316850:intron 30.0%
TTGGATGTCTATAATGAGAA+AGG - chr2_4:14148464-14148483 Msa0316850:intron 30.0%
TAATGAGAAAGGAGAAATAG+AGG - chr2_4:14148475-14148494 Msa0316850:intron 30.0%
!! CAAACATTTTATTTATGGGC+AGG - chr2_4:14149022-14149041 Msa0316850:CDS 30.0%
AAGGAAAGAAAAGTGGTTGT+TGG - chr2_4:14147797-14147816 Msa0316850:CDS 35.0%
TGGTGGTTAGTATGTGTATA+TGG + chr2_4:14147912-14147931 None:intergenic 35.0%
ACTAATGAAGATGAAGATGG+TGG + chr2_4:14147932-14147951 None:intergenic 35.0%
AATATGGGAGGGATTATTGT+TGG - chr2_4:14147963-14147982 Msa0316850:intron 35.0%
! GATATCTTATCTTGGTCTTC+TGG - chr2_4:14148077-14148096 Msa0316850:intron 35.0%
GATTAAAGGGTGGGAAAAAA+GGG + chr2_4:14148185-14148204 None:intergenic 35.0%
TGATTAAAGGGTGGGAAAAA+AGG + chr2_4:14148186-14148205 None:intergenic 35.0%
CACAAGAGCTAGATTCAAAA+TGG - chr2_4:14148263-14148282 Msa0316850:intron 35.0%
AAGTCACATGTGTAAGTGAA+AGG + chr2_4:14148868-14148887 None:intergenic 35.0%
CTTCAGTGTACATCTTGATA+GGG + chr2_4:14149126-14149145 None:intergenic 35.0%
TTATTCCTTCCTTCTCAAGT+GGG + chr2_4:14149162-14149181 None:intergenic 35.0%
AAGGAAAGAAAAGTGGTTGT+TGG - chr2_4:14147797-14147816 Msa0316850:CDS 35.0%
TGGTGGTTAGTATGTGTATA+TGG + chr2_4:14147912-14147931 None:intergenic 35.0%
ACTAATGAAGATGAAGATGG+TGG + chr2_4:14147932-14147951 None:intergenic 35.0%
AATATGGGAGGGATTATTGT+TGG - chr2_4:14147963-14147982 Msa0316850:intron 35.0%
! GATATCTTATCTTGGTCTTC+TGG - chr2_4:14148077-14148096 Msa0316850:intron 35.0%
GATTAAAGGGTGGGAAAAAA+GGG + chr2_4:14148185-14148204 None:intergenic 35.0%
TGATTAAAGGGTGGGAAAAA+AGG + chr2_4:14148186-14148205 None:intergenic 35.0%
CACAAGAGCTAGATTCAAAA+TGG - chr2_4:14148263-14148282 Msa0316850:intron 35.0%
AAGTCACATGTGTAAGTGAA+AGG + chr2_4:14148868-14148887 None:intergenic 35.0%
CTTCAGTGTACATCTTGATA+GGG + chr2_4:14149126-14149145 None:intergenic 35.0%
TTATTCCTTCCTTCTCAAGT+GGG + chr2_4:14149162-14149181 None:intergenic 35.0%
GGTGATGAAGGAAAGAAAAG+TGG - chr2_4:14147790-14147809 Msa0316850:CDS 40.0%
! AATGAAGATGAAGATGGTGG+TGG + chr2_4:14147929-14147948 None:intergenic 40.0%
!! TGTTGGTGTTATTGTTGTGG+TGG - chr2_4:14147980-14147999 Msa0316850:intron 40.0%
AACAAGTGAGGTACATCATG+TGG - chr2_4:14148022-14148041 Msa0316850:intron 40.0%
! TCTTATCTTGGTCTTCTGGA+AGG - chr2_4:14148081-14148100 Msa0316850:intron 40.0%
! CTTATCTTGGTCTTCTGGAA+GGG - chr2_4:14148082-14148101 Msa0316850:intron 40.0%
GTTCTTCATTCTAACTCTGC+TGG + chr2_4:14148354-14148373 None:intergenic 40.0%
CCTTCAGTGTACATCTTGAT+AGG + chr2_4:14149127-14149146 None:intergenic 40.0%
CCTATCAAGATGTACACTGA+AGG - chr2_4:14149124-14149143 Msa0316850:five_prime_UTR 40.0%
ACATACAATCCCACTTGAGA+AGG - chr2_4:14149150-14149169 Msa0316850:five_prime_UTR 40.0%
CTTATTCCTTCCTTCTCAAG+TGG + chr2_4:14149163-14149182 None:intergenic 40.0%
! GACTCTGAGAATTGCAAGAA+TGG - chr2_4:14149199-14149218 Msa0316850:five_prime_UTR 40.0%
GGTGATGAAGGAAAGAAAAG+TGG - chr2_4:14147790-14147809 Msa0316850:CDS 40.0%
! AATGAAGATGAAGATGGTGG+TGG + chr2_4:14147929-14147948 None:intergenic 40.0%
!! TGTTGGTGTTATTGTTGTGG+TGG - chr2_4:14147980-14147999 Msa0316850:intron 40.0%
AACAAGTGAGGTACATCATG+TGG - chr2_4:14148022-14148041 Msa0316850:intron 40.0%
! TCTTATCTTGGTCTTCTGGA+AGG - chr2_4:14148081-14148100 Msa0316850:intron 40.0%
! CTTATCTTGGTCTTCTGGAA+GGG - chr2_4:14148082-14148101 Msa0316850:intron 40.0%
GTTCTTCATTCTAACTCTGC+TGG + chr2_4:14148354-14148373 None:intergenic 40.0%
CCTTCAGTGTACATCTTGAT+AGG + chr2_4:14149127-14149146 None:intergenic 40.0%
CCTATCAAGATGTACACTGA+AGG - chr2_4:14149124-14149143 Msa0316850:five_prime_UTR 40.0%
ACATACAATCCCACTTGAGA+AGG - chr2_4:14149150-14149169 Msa0316850:five_prime_UTR 40.0%
CTTATTCCTTCCTTCTCAAG+TGG + chr2_4:14149163-14149182 None:intergenic 40.0%
! GACTCTGAGAATTGCAAGAA+TGG - chr2_4:14149199-14149218 Msa0316850:five_prime_UTR 40.0%
TGTTGTGGTGGCTATGATCA+TGG - chr2_4:14147992-14148011 Msa0316850:intron 45.0%
AAGTGAGGTACATCATGTGG+TGG - chr2_4:14148025-14148044 Msa0316850:intron 45.0%
AGTGAGGTACATCATGTGGT+GGG - chr2_4:14148026-14148045 Msa0316850:intron 45.0%
ACCACTTGCGTTGTTGCAAA+TGG - chr2_4:14148837-14148856 Msa0316850:intron 45.0%
ACCATTTGCAACAACGCAAG+TGG + chr2_4:14148841-14148860 None:intergenic 45.0%
!! AGCACAAGGATTAGTTGCAG+AGG - chr2_4:14149060-14149079 Msa0316850:exon 45.0%
ACAATCCCACTTGAGAAGGA+AGG - chr2_4:14149154-14149173 Msa0316850:five_prime_UTR 45.0%
TGTTGTGGTGGCTATGATCA+TGG - chr2_4:14147992-14148011 Msa0316850:intron 45.0%
AAGTGAGGTACATCATGTGG+TGG - chr2_4:14148025-14148044 Msa0316850:intron 45.0%
AGTGAGGTACATCATGTGGT+GGG - chr2_4:14148026-14148045 Msa0316850:intron 45.0%
ACCACTTGCGTTGTTGCAAA+TGG - chr2_4:14148837-14148856 Msa0316850:intron 45.0%
ACCATTTGCAACAACGCAAG+TGG + chr2_4:14148841-14148860 None:intergenic 45.0%
!! AGCACAAGGATTAGTTGCAG+AGG - chr2_4:14149060-14149079 Msa0316850:exon 45.0%
ACAATCCCACTTGAGAAGGA+AGG - chr2_4:14149154-14149173 Msa0316850:five_prime_UTR 45.0%
!! AAATATAATAAAATAGAAAA+TGG - chr2_4:14148564-14148583 Msa0316850:intron 5.0%
!! AAATATAATAAAATAGAAAA+TGG - chr2_4:14148564-14148583 Msa0316850:intron 5.0%
GGTGGCTATGATCATGGATG+TGG - chr2_4:14147998-14148017 Msa0316850:intron 50.0%
CATGGATGTGGCAACAAGTG+AGG - chr2_4:14148010-14148029 Msa0316850:intron 50.0%
! GTCTTCTGGAAGGGTCTTCA+GGG - chr2_4:14148091-14148110 Msa0316850:intron 50.0%
TTTGCGTACTCAGCAGCACA+AGG - chr2_4:14149046-14149065 Msa0316850:exon 50.0%
GGTGGCTATGATCATGGATG+TGG - chr2_4:14147998-14148017 Msa0316850:intron 50.0%
CATGGATGTGGCAACAAGTG+AGG - chr2_4:14148010-14148029 Msa0316850:intron 50.0%
! GTCTTCTGGAAGGGTCTTCA+GGG - chr2_4:14148091-14148110 Msa0316850:intron 50.0%
TTTGCGTACTCAGCAGCACA+AGG - chr2_4:14149046-14149065 Msa0316850:exon 50.0%
! GAGGTACATCATGTGGTGGG+AGG - chr2_4:14148029-14148048 Msa0316850:intron 55.0%
! CATGTGGTGGGAGGAGATCA+TGG - chr2_4:14148038-14148057 Msa0316850:intron 55.0%
TGGTGGGAGGAGATCATGGA+TGG - chr2_4:14148042-14148061 Msa0316850:intron 55.0%
GGTGGGAGGAGATCATGGAT+GGG - chr2_4:14148043-14148062 Msa0316850:intron 55.0%
! GGTCTTCTGGAAGGGTCTTC+AGG - chr2_4:14148090-14148109 Msa0316850:intron 55.0%
TCTGGAAGGGTCTTCAGGGT+TGG - chr2_4:14148095-14148114 Msa0316850:intron 55.0%
! GAGGTACATCATGTGGTGGG+AGG - chr2_4:14148029-14148048 Msa0316850:intron 55.0%
! CATGTGGTGGGAGGAGATCA+TGG - chr2_4:14148038-14148057 Msa0316850:intron 55.0%
TGGTGGGAGGAGATCATGGA+TGG - chr2_4:14148042-14148061 Msa0316850:intron 55.0%
GGTGGGAGGAGATCATGGAT+GGG - chr2_4:14148043-14148062 Msa0316850:intron 55.0%
! GGTCTTCTGGAAGGGTCTTC+AGG - chr2_4:14148090-14148109 Msa0316850:intron 55.0%
TCTGGAAGGGTCTTCAGGGT+TGG - chr2_4:14148095-14148114 Msa0316850:intron 55.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 14147784 14149240 14147784 ID=Msa0316850;Name=Msa0316850
chr2_4 mRNA 14147784 14149240 14147784 ID=Msa0316850-mRNA-1;Parent=Msa0316850;Name=Msa0316850-mRNA-1;_AED=0.11;_eAED=0.11;_QI=176|1|0.5|1|1|1|2|0|122
chr2_4 exon 14147784 14147980 14147784 ID=Msa0316850-mRNA-1:exon:5397;Parent=Msa0316850-mRNA-1
chr2_4 exon 14148896 14149240 14148896 ID=Msa0316850-mRNA-1:exon:5396;Parent=Msa0316850-mRNA-1
chr2_4 five_prime_UTR 14149065 14149240 14149065 ID=Msa0316850-mRNA-1:five_prime_utr;Parent=Msa0316850-mRNA-1
chr2_4 CDS 14148896 14149064 14148896 ID=Msa0316850-mRNA-1:cds;Parent=Msa0316850-mRNA-1
chr2_4 CDS 14147784 14147980 14147784 ID=Msa0316850-mRNA-1:cds;Parent=Msa0316850-mRNA-1
Gene Sequence

>Msa0316850

ATGAATATGGGAGGGATTATTGTTGGTGTTATTGTTGTGGTGGCTATGATCATGGATGTGGCAACAAGTGAGGTACATCATGTGGTGGGAGGAGATCATGGATGGGATCCAAACTCAGATATCTTATCTTGGTCTTCTGGAAGGGTCTTCAGGGTTGGAGACCAAATATGGTTTGCGTACTCAGCAGCACAAGGATTAGTTGCAGAGGTGCAAAGCAGAGAAGAATATGAATCTTGCAATATGAGCAACCCTATCAAGATGTACACTGAAGGTTTACATACAATCCCACTTGAGAAGGAAGGAATAAGATACTTTGTGAGTAGTGACTCTGAGAATTGCAAGAATGGTCTCAAACTCAATGTTGAG

Protein sequence

>Msa0316850

MNMGGIIVGVIVVVAMIMDVATSEVHHVVGGDHGWDPNSDILSWSSGRVFRVGDQIWFAYSAAQGLVAEVQSREEYESCNMSNPIKMYTEGLHTIPLEKEGIRYFVSSDSENCKNGLKLNVE