Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0983500 | RHN45450.1 | 97.744 | 133 | 3 | 0 | 1 | 133 | 49 | 181 | 8.27e-88 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0983500 | A0A396GWN7 | 97.744 | 133 | 3 | 0 | 1 | 133 | 49 | 181 | 3.95e-88 | 265 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021210 | Msa0983500 | -0.808055 | 3.737485e-50 | -8.615850e-47 |
| Msa0026430 | Msa0983500 | -0.816985 | 4.170199e-52 | -8.615850e-47 |
| Msa0034970 | Msa0983500 | -0.820760 | 5.783737e-53 | -8.615850e-47 |
| Msa0043980 | Msa0983500 | -0.803097 | 4.101951e-49 | -8.615850e-47 |
| Msa0054480 | Msa0983500 | -0.810036 | 1.407626e-50 | -8.615850e-47 |
| Msa0069500 | Msa0983500 | 0.835453 | 1.663245e-56 | -8.615850e-47 |
| Msa0069510 | Msa0983500 | 0.806649 | 7.425995e-50 | -8.615850e-47 |
| Msa0112770 | Msa0983500 | -0.800458 | 1.427599e-48 | -8.615850e-47 |
| Msa0114430 | Msa0983500 | -0.813960 | 1.964460e-51 | -8.615850e-47 |
| Msa0682680 | Msa0983500 | -0.824792 | 6.662331e-54 | -8.615850e-47 |
| Msa0697990 | Msa0983500 | 0.847345 | 1.226244e-59 | -8.615850e-47 |
| Msa0698540 | Msa0983500 | -0.803429 | 3.501543e-49 | -8.615850e-47 |
| Msa0709160 | Msa0983500 | -0.820193 | 7.804175e-53 | -8.615850e-47 |
| Msa0721280 | Msa0983500 | -0.840494 | 8.408754e-58 | -8.615850e-47 |
| Msa0729510 | Msa0983500 | -0.808844 | 2.536198e-50 | -8.615850e-47 |
| Msa0794510 | Msa0983500 | 0.802685 | 4.988886e-49 | -8.615850e-47 |
| Msa0817460 | Msa0983500 | -0.804010 | 2.651735e-49 | -8.615850e-47 |
| Msa0832340 | Msa0983500 | -0.814883 | 1.227579e-51 | -8.615850e-47 |
| Msa0175840 | Msa0983500 | -0.810598 | 1.064539e-50 | -8.615850e-47 |
| Msa0206010 | Msa0983500 | -0.800413 | 1.458181e-48 | -8.615850e-47 |
| Msa0220440 | Msa0983500 | -0.800735 | 1.253548e-48 | -8.615850e-47 |
| Msa0229380 | Msa0983500 | -0.811412 | 7.091633e-51 | -8.615850e-47 |
| Msa0367870 | Msa0983500 | -0.800434 | 1.443671e-48 | -8.615850e-47 |
| Msa0390730 | Msa0983500 | -0.809421 | 1.908052e-50 | -8.615850e-47 |
| Msa0455760 | Msa0983500 | -0.805058 | 1.603100e-49 | -8.615850e-47 |
| Msa0467060 | Msa0983500 | -0.801936 | 7.116236e-49 | -8.615850e-47 |
| Msa0980880 | Msa0983500 | -0.802290 | 6.017156e-49 | -8.615850e-47 |
| Msa0983170 | Msa0983500 | 0.874158 | 8.401683e-68 | -8.615850e-47 |
| Msa0983180 | Msa0983500 | 0.882905 | 7.037771e-71 | -8.615850e-47 |
| Msa0983190 | Msa0983500 | 0.918019 | 2.609897e-86 | -8.615850e-47 |
| Msa0983210 | Msa0983500 | 0.976135 | 2.991318e-141 | -8.615850e-47 |
| Msa0983220 | Msa0983500 | 0.851607 | 7.947994e-61 | -8.615850e-47 |
| Msa0983260 | Msa0983500 | 0.891197 | 4.946556e-74 | -8.615850e-47 |
| Msa0983300 | Msa0983500 | 0.868653 | 5.565111e-66 | -8.615850e-47 |
| Msa0983310 | Msa0983500 | 0.806730 | 7.136987e-50 | -8.615850e-47 |
| Msa0983320 | Msa0983500 | 0.866377 | 2.981853e-65 | -8.615850e-47 |
| Msa0983350 | Msa0983500 | 0.866381 | 2.972208e-65 | -8.615850e-47 |
| Msa0983360 | Msa0983500 | 0.816659 | 4.934085e-52 | -8.615850e-47 |
| Msa0983460 | Msa0983500 | 0.884464 | 1.874810e-71 | -8.615850e-47 |
| Msa0983490 | Msa0983500 | 0.860295 | 2.281802e-63 | -8.615850e-47 |
| Msa0983500 | Msa0983520 | 0.903810 | 2.358985e-79 | -8.615850e-47 |
| Msa0983500 | Msa0983530 | 0.876611 | 1.217081e-68 | -8.615850e-47 |
| Msa0983500 | Msa0983540 | 0.877049 | 8.580735e-69 | -8.615850e-47 |
| Msa0983500 | Msa0997970 | -0.802510 | 5.421601e-49 | -8.615850e-47 |
| Msa0983500 | Msa1063420 | -0.803517 | 3.357134e-49 | -8.615850e-47 |
| Msa0983500 | Msa1100050 | -0.812190 | 4.801772e-51 | -8.615850e-47 |
| Msa0983500 | Msa1107900 | -0.803059 | 4.176593e-49 | -8.615850e-47 |
| Msa0983500 | Msa1109680 | -0.823696 | 1.205088e-53 | -8.615850e-47 |
| Msa0983500 | Msa1121490 | -0.800286 | 1.547727e-48 | -8.615850e-47 |
| Msa0983500 | Msa1123470 | -0.810692 | 1.016033e-50 | -8.615850e-47 |
| Msa0983500 | Msa1135470 | -0.812043 | 5.171401e-51 | -8.615850e-47 |
| Msa0983500 | Msa1174040 | -0.806328 | 8.676293e-50 | -8.615850e-47 |
| Msa0983500 | Msa1190920 | -0.812636 | 3.837586e-51 | -8.615850e-47 |
| Msa0983500 | Msa1193290 | -0.800738 | 1.252159e-48 | -8.615850e-47 |
| Msa0983500 | Msa1210020 | -0.819909 | 9.067699e-53 | -8.615850e-47 |
| Msa0983500 | Msa1228620 | 0.853360 | 2.515762e-61 | -8.615850e-47 |
| Msa0983500 | Msa1254730 | -0.813698 | 2.243346e-51 | -8.615850e-47 |
| Msa0983500 | Msa1294820 | -0.810613 | 1.056342e-50 | -8.615850e-47 |
| Msa0983500 | Msa1298510 | -0.822799 | 1.952130e-53 | -8.615850e-47 |
| Msa0983500 | Msa1336570 | -0.800443 | 1.437518e-48 | -8.615850e-47 |
| Msa0983500 | Msa1353470 | -0.811670 | 6.233325e-51 | -8.615850e-47 |
| Msa0983500 | Msa1357890 | -0.842905 | 1.943743e-58 | -8.615850e-47 |
| Msa0983500 | Msa1372760 | -0.810316 | 1.224841e-50 | -8.615850e-47 |
| Msa0983500 | Msa1391960 | 0.800838 | 1.194666e-48 | -8.615850e-47 |
| Msa0983500 | Msa1391970 | 0.863955 | 1.719628e-64 | -8.615850e-47 |
| Msa0983500 | Msa1392010 | 0.863599 | 2.219342e-64 | -8.615850e-47 |
| Msa0983500 | Msa1392030 | 0.861249 | 1.171088e-63 | -8.615850e-47 |
| Msa0983500 | Msa1392120 | 0.874802 | 5.081434e-68 | -8.615850e-47 |
| Msa0983500 | Msa1392160 | 0.906253 | 1.808308e-80 | -8.615850e-47 |
| Msa0983500 | Msa1398090 | -0.842721 | 2.174591e-58 | -8.615850e-47 |
| Msa0983500 | Msa1406430 | -0.807032 | 6.160684e-50 | -8.615850e-47 |
| Msa0983500 | Msa1407600 | -0.803871 | 2.834923e-49 | -8.615850e-47 |
| Msa0983500 | Msa1427230 | -0.807197 | 5.685531e-50 | -8.615850e-47 |
| Msa0983500 | Msa1456230 | -0.801886 | 7.285323e-49 | -8.615850e-47 |
| Msa0983500 | Msa1466540 | -0.841953 | 3.475992e-58 | -8.615850e-47 |
| Msa0253200 | Msa0983500 | -0.815424 | 9.309739e-52 | -8.615850e-47 |
| Msa0261720 | Msa0983500 | -0.825447 | 4.664343e-54 | -8.615850e-47 |
| Msa0271530 | Msa0983500 | -0.804235 | 2.381461e-49 | -8.615850e-47 |
| Msa0287410 | Msa0983500 | -0.800072 | 1.710458e-48 | -8.615850e-47 |
| Msa0292030 | Msa0983500 | -0.816671 | 4.902694e-52 | -8.615850e-47 |
| Msa0319170 | Msa0983500 | -0.809857 | 1.537648e-50 | -8.615850e-47 |
| Msa0326110 | Msa0983500 | -0.808415 | 3.132659e-50 | -8.615850e-47 |
| Msa0363790 | Msa0983500 | -0.811129 | 8.170966e-51 | -8.615850e-47 |
| Msa0547160 | Msa0983500 | -0.805409 | 1.353560e-49 | -8.615850e-47 |
| Msa0556060 | Msa0983500 | -0.803975 | 2.696590e-49 | -8.615850e-47 |
| Msa0844490 | Msa0983500 | -0.807928 | 3.977442e-50 | -8.615850e-47 |
| Msa0844570 | Msa0983500 | -0.808029 | 3.786289e-50 | -8.615850e-47 |
| Msa0849030 | Msa0983500 | -0.816375 | 5.712056e-52 | -8.615850e-47 |
| Msa0860030 | Msa0983500 | 0.801678 | 8.040041e-49 | -8.615850e-47 |
| Msa0908830 | Msa0983500 | 0.870732 | 1.168228e-66 | -8.615850e-47 |
| Msa0908840 | Msa0983500 | 0.882157 | 1.317730e-70 | -8.615850e-47 |
| Msa0908850 | Msa0983500 | 0.902982 | 5.548360e-79 | -8.615850e-47 |
| Msa0908870 | Msa0983500 | 0.950830 | 7.302459e-109 | -8.615850e-47 |
| Msa0908920 | Msa0983500 | 0.851118 | 1.092646e-60 | -8.615850e-47 |
| Msa0908930 | Msa0983500 | 0.876394 | 1.445755e-68 | -8.615850e-47 |
| Msa0919990 | Msa0983500 | 0.809899 | 1.506170e-50 | -8.615850e-47 |
| Msa0920000 | Msa0983500 | 0.811108 | 8.255383e-51 | -8.615850e-47 |
| Msa0920060 | Msa0983500 | 0.846362 | 2.278204e-59 | -8.615850e-47 |
| Msa0933100 | Msa0983500 | -0.808200 | 3.480945e-50 | -8.615850e-47 |
| Msa0944900 | Msa0983500 | 0.978043 | 5.254356e-145 | -8.615850e-47 |
| Msa0944920 | Msa0983500 | 0.911207 | 7.891063e-83 | -8.615850e-47 |
| Msa0944930 | Msa0983500 | 0.875650 | 2.606884e-68 | -8.615850e-47 |
| Msa0944940 | Msa0983500 | 0.883251 | 5.257519e-71 | -8.615850e-47 |
| Msa0944990 | Msa0983500 | 0.888623 | 5.010134e-73 | -8.615850e-47 |
| Msa0962840 | Msa0983500 | -0.812970 | 3.242805e-51 | -8.615850e-47 |
| Msa0969520 | Msa0983500 | -0.806675 | 7.331328e-50 | -8.615850e-47 |
| Msa0974070 | Msa0983500 | -0.801422 | 9.072848e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0983500 | MtrunA17_MTg0491251 | 98.496 | 133 | 2 | 0 | 1 | 133 | 81 | 213 | 1.16e-92 | 267 |
| Msa0983500 | MtrunA17_Chr7g0231341 | 97.744 | 133 | 3 | 0 | 1 | 133 | 49 | 181 | 7.61e-92 | 265 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 49 sgRNAs with CRISPR-Local
Find 67 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCCGACGCCGACCCATTT+TGG | 0.210676 | 6_4:-26619960 | None:intergenic |
| CTCTTTGGATGTATCCTTCT+GGG | 0.227156 | 6_4:+26619860 | None:intergenic |
| CCTCTTTGGATGTATCCTTC+TGG | 0.235353 | 6_4:+26619859 | None:intergenic |
| AGACTTCGTTGCAAATAAAT+TGG | 0.238736 | 6_4:+26620080 | Msa0983500:CDS |
| CCCGCCGCTCCTATCCAAAA+TGG | 0.239934 | 6_4:+26619946 | Msa0983500:CDS |
| CGTAGCGCTTGCTCATAAAT+TGG | 0.318064 | 6_4:-26620126 | None:intergenic |
| ATTGGACCCTGCGGCTGCCC+CGG | 0.373068 | 6_4:-26620108 | None:intergenic |
| GATAGGAGCGGCGGGTCCGC+CGG | 0.375170 | 6_4:-26619938 | None:intergenic |
| TATCCTTCTGGGGCTGATGC+TGG | 0.380202 | 6_4:+26619871 | Msa0983500:CDS |
| AGCGGCGGGTCCGCCGGGGC+GGG | 0.390016 | 6_4:-26619932 | None:intergenic |
| TATGGTTTCGCGGCCGGAGC+TGG | 0.394590 | 6_4:-26620003 | None:intergenic |
| GGGAAGGCTGATGCTGCTCT+TGG | 0.402499 | 6_4:-26619912 | None:intergenic |
| GCGGGTCCGCCGGGGCGGGA+AGG | 0.403262 | 6_4:-26619928 | None:intergenic |
| TTGGACCCTGCGGCTGCCCC+GGG | 0.438206 | 6_4:-26620107 | None:intergenic |
| GGAAGACCCGGGGCAGCCGC+AGG | 0.439885 | 6_4:+26620101 | Msa0983500:CDS |
| TAGGAGCGGCGGGTCCGCCG+GGG | 0.472146 | 6_4:-26619936 | None:intergenic |
| TTCCGTGGAGCAGCCAGCTC+CGG | 0.472407 | 6_4:+26619990 | Msa0983500:CDS |
| GGCCGGAGCTGGCTGCTCCA+CGG | 0.474217 | 6_4:-26619992 | None:intergenic |
| TGCAAATAAATTGGAAGACC+CGG | 0.488016 | 6_4:+26620089 | Msa0983500:CDS |
| CAGCATCAGCCTTCCCGCCC+CGG | 0.489074 | 6_4:+26619919 | Msa0983500:CDS |
| CCGCCGCTCCTATCCAAAAT+GGG | 0.493631 | 6_4:+26619947 | Msa0983500:CDS |
| GGACGAACTTCAGCGCTGGC+TGG | 0.506906 | 6_4:+26620191 | Msa0983500:CDS |
| AGCGCTGGCTGGTTTCACTA+AGG | 0.509513 | 6_4:+26620202 | Msa0983500:CDS |
| AGCTGAAGGAGGGCTATGTA+TGG | 0.518841 | 6_4:-26620021 | None:intergenic |
| GCGCTGGCTGGTTTCACTAA+GGG | 0.521276 | 6_4:+26620203 | Msa0983500:CDS |
| GCTATGTATGGTTTCGCGGC+CGG | 0.522221 | 6_4:-26620009 | None:intergenic |
| GAGGGCTATGTATGGTTTCG+CGG | 0.534222 | 6_4:-26620013 | None:intergenic |
| AGCAAGCGCTACGCCTGGTA+TGG | 0.535586 | 6_4:+26620136 | Msa0983500:CDS |
| TTATGAGCAAGCGCTACGCC+TGG | 0.557111 | 6_4:+26620131 | Msa0983500:CDS |
| CGCTCCTATCCAAAATGGGT+CGG | 0.568858 | 6_4:+26619951 | Msa0983500:CDS |
| GATCGATGGCAGTACTAACC+AGG | 0.569954 | 6_4:+26620170 | Msa0983500:CDS |
| GCAAATAAATTGGAAGACCC+GGG | 0.573068 | 6_4:+26620090 | Msa0983500:CDS |
| ATAGCCCTCCTTCAGCTAGA+GGG | 0.580354 | 6_4:+26620027 | Msa0983500:CDS |
| ACCAGGACGAACTTCAGCGC+TGG | 0.584629 | 6_4:+26620187 | Msa0983500:CDS |
| GAAGACCCGGGGCAGCCGCA+GGG | 0.585751 | 6_4:+26620102 | Msa0983500:CDS |
| GCCAGCGCTGAAGTTCGTCC+TGG | 0.586980 | 6_4:-26620188 | None:intergenic |
| TCTTTGGATGTATCCTTCTG+GGG | 0.587601 | 6_4:+26619861 | None:intergenic |
| TGGCTGCTCCACGGAACTAG+TGG | 0.588921 | 6_4:-26619983 | None:intergenic |
| AAAATGGATTTGTATTGTCG+GGG | 0.604607 | 6_4:-26620231 | None:intergenic |
| TCTCGAGTTCATACCATACC+AGG | 0.605945 | 6_4:-26620149 | None:intergenic |
| TGGTATGAACTCGAGATCGA+TGG | 0.622194 | 6_4:+26620156 | Msa0983500:CDS |
| TAGCCCTCCTTCAGCTAGAG+GGG | 0.628752 | 6_4:+26620028 | Msa0983500:CDS |
| TATCCAAAATGGGTCGGCGT+CGG | 0.631571 | 6_4:+26619957 | Msa0983500:CDS |
| GAGCCAGCATCAGCCCCAGA+AGG | 0.632838 | 6_4:-26619874 | None:intergenic |
| TGCTCATAAATTGGACCCTG+CGG | 0.637696 | 6_4:-26620117 | None:intergenic |
| CATAGCCCTCCTTCAGCTAG+AGG | 0.642446 | 6_4:+26620026 | Msa0983500:CDS |
| AGCCCTCCTTCAGCTAGAGG+GGG | 0.644919 | 6_4:+26620029 | Msa0983500:CDS |
| AAATGGATTTGTATTGTCGG+GGG | 0.651927 | 6_4:-26620230 | None:intergenic |
| CAAATAAATTGGAAGACCCG+GGG | 0.684347 | 6_4:+26620091 | Msa0983500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATGGATTTGTATTGTC+GGG | - | chr6_4:26620235-26620254 | None:intergenic | 25.0% |
| !! | CAAAAATGGATTTGTATTGT+CGG | - | chr6_4:26620236-26620255 | None:intergenic | 25.0% |
| AGACTTCGTTGCAAATAAAT+TGG | + | chr6_4:26620080-26620099 | Msa0983500:CDS | 30.0% | |
| ! | AAAATGGATTTGTATTGTCG+GGG | - | chr6_4:26620234-26620253 | None:intergenic | 30.0% |
| ! | CGACAATACAAATCCATTTT+TGG | + | chr6_4:26620234-26620253 | Msa0983500:CDS | 30.0% |
| TGCAAATAAATTGGAAGACC+CGG | + | chr6_4:26620089-26620108 | Msa0983500:CDS | 35.0% | |
| ! | AAATGGATTTGTATTGTCGG+GGG | - | chr6_4:26620233-26620252 | None:intergenic | 35.0% |
| GCAAATAAATTGGAAGACCC+GGG | + | chr6_4:26620090-26620109 | Msa0983500:CDS | 40.0% | |
| CAAATAAATTGGAAGACCCG+GGG | + | chr6_4:26620091-26620110 | Msa0983500:CDS | 40.0% | |
| !!! | AATCCATTTTTGGCTTCTCC+CGG | + | chr6_4:26620244-26620263 | Msa0983500:CDS | 40.0% |
| TGCTCATAAATTGGACCCTG+CGG | - | chr6_4:26620120-26620139 | None:intergenic | 45.0% | |
| CGTAGCGCTTGCTCATAAAT+TGG | - | chr6_4:26620129-26620148 | None:intergenic | 45.0% | |
| TCTCGAGTTCATACCATACC+AGG | - | chr6_4:26620152-26620171 | None:intergenic | 45.0% | |
| TGGTATGAACTCGAGATCGA+TGG | + | chr6_4:26620156-26620175 | Msa0983500:CDS | 45.0% | |
| !!! | ATCCATTTTTGGCTTCTCCC+GGG | + | chr6_4:26620245-26620264 | Msa0983500:CDS | 45.0% |
| ! | CGACCCATTTTGGATAGGAG+CGG | - | chr6_4:26619953-26619972 | None:intergenic | 50.0% |
| CGCTCCTATCCAAAATGGGT+CGG | + | chr6_4:26619951-26619970 | Msa0983500:CDS | 50.0% | |
| TATCCAAAATGGGTCGGCGT+CGG | + | chr6_4:26619957-26619976 | Msa0983500:CDS | 50.0% | |
| GAGGGCTATGTATGGTTTCG+CGG | - | chr6_4:26620016-26620035 | None:intergenic | 50.0% | |
| AGCTGAAGGAGGGCTATGTA+TGG | - | chr6_4:26620024-26620043 | None:intergenic | 50.0% | |
| ATAGCCCTCCTTCAGCTAGA+GGG | + | chr6_4:26620027-26620046 | Msa0983500:CDS | 50.0% | |
| GATCGATGGCAGTACTAACC+AGG | + | chr6_4:26620170-26620189 | Msa0983500:CDS | 50.0% | |
| !!! | TCCATTTTTGGCTTCTCCCG+GGG | + | chr6_4:26620246-26620265 | Msa0983500:CDS | 50.0% |
| !! | TATCCTTCTGGGGCTGATGC+TGG | + | chr6_4:26619871-26619890 | Msa0983500:CDS | 55.0% |
| ! | CCATTTTGGATAGGAGCGGC+GGG | - | chr6_4:26619949-26619968 | None:intergenic | 55.0% |
| ! | CCCATTTTGGATAGGAGCGG+CGG | - | chr6_4:26619950-26619969 | None:intergenic | 55.0% |
| CCGCCGCTCCTATCCAAAAT+GGG | + | chr6_4:26619947-26619966 | Msa0983500:CDS | 55.0% | |
| ! | GACGCCGACCCATTTTGGAT+AGG | - | chr6_4:26619958-26619977 | None:intergenic | 55.0% |
| GCTATGTATGGTTTCGCGGC+CGG | - | chr6_4:26620012-26620031 | None:intergenic | 55.0% | |
| CATAGCCCTCCTTCAGCTAG+AGG | + | chr6_4:26620026-26620045 | Msa0983500:CDS | 55.0% | |
| TAGCCCTCCTTCAGCTAGAG+GGG | + | chr6_4:26620028-26620047 | Msa0983500:CDS | 55.0% | |
| TTATGAGCAAGCGCTACGCC+TGG | + | chr6_4:26620131-26620150 | Msa0983500:CDS | 55.0% | |
| !! | AGCGCTGGCTGGTTTCACTA+AGG | + | chr6_4:26620202-26620221 | Msa0983500:CDS | 55.0% |
| !! | GCGCTGGCTGGTTTCACTAA+GGG | + | chr6_4:26620203-26620222 | Msa0983500:CDS | 55.0% |
| !!! | CCATTTTTGGCTTCTCCCGG+GGG | + | chr6_4:26620247-26620266 | Msa0983500:CDS | 55.0% |
| !!! | CATTTTTGGCTTCTCCCGGG+GGG | + | chr6_4:26620248-26620267 | Msa0983500:CDS | 55.0% |
| GGGAAGGCTGATGCTGCTCT+TGG | - | chr6_4:26619915-26619934 | None:intergenic | 60.0% | |
| CCCGCCGCTCCTATCCAAAA+TGG | + | chr6_4:26619946-26619965 | Msa0983500:CDS | 60.0% | |
| ! | AAGCCGACGCCGACCCATTT+TGG | - | chr6_4:26619963-26619982 | None:intergenic | 60.0% |
| ! | GTCGGCTTCCACTAGTTCCG+TGG | + | chr6_4:26619975-26619994 | Msa0983500:CDS | 60.0% |
| TGGCTGCTCCACGGAACTAG+TGG | - | chr6_4:26619986-26620005 | None:intergenic | 60.0% | |
| AGCCCTCCTTCAGCTAGAGG+GGG | + | chr6_4:26620029-26620048 | Msa0983500:CDS | 60.0% | |
| CTCCCCCTCTAGCTGAAGGA+GGG | - | chr6_4:26620034-26620053 | None:intergenic | 60.0% | |
| TCCTTCAGCTAGAGGGGGAG+CGG | + | chr6_4:26620034-26620053 | Msa0983500:CDS | 60.0% | |
| AGCAAGCGCTACGCCTGGTA+TGG | + | chr6_4:26620136-26620155 | Msa0983500:CDS | 60.0% | |
| ACCAGGACGAACTTCAGCGC+TGG | + | chr6_4:26620187-26620206 | Msa0983500:CDS | 60.0% | |
| CCCCCGGGAGAAGCCAAAAA+TGG | - | chr6_4:26620250-26620269 | None:intergenic | 60.0% | |
| GAGCCAGCATCAGCCCCAGA+AGG | - | chr6_4:26619877-26619896 | None:intergenic | 65.0% | |
| TTCCGTGGAGCAGCCAGCTC+CGG | + | chr6_4:26619990-26620009 | Msa0983500:CDS | 65.0% | |
| TATGGTTTCGCGGCCGGAGC+TGG | - | chr6_4:26620006-26620025 | None:intergenic | 65.0% | |
| GCTCCCCCTCTAGCTGAAGG+AGG | - | chr6_4:26620035-26620054 | None:intergenic | 65.0% | |
| TCCGCTCCCCCTCTAGCTGA+AGG | - | chr6_4:26620038-26620057 | None:intergenic | 65.0% | |
| ! | GCCAGCGCTGAAGTTCGTCC+TGG | - | chr6_4:26620191-26620210 | None:intergenic | 65.0% |
| !! | GGACGAACTTCAGCGCTGGC+TGG | + | chr6_4:26620191-26620210 | Msa0983500:CDS | 65.0% |
| CAGCATCAGCCTTCCCGCCC+CGG | + | chr6_4:26619919-26619938 | Msa0983500:CDS | 70.0% | |
| ATTGGACCCTGCGGCTGCCC+CGG | - | chr6_4:26620111-26620130 | None:intergenic | 70.0% | |
| CATCAGCCTTCCCGCCCCGG+CGG | + | chr6_4:26619922-26619941 | Msa0983500:CDS | 75.0% | |
| ATAGGAGCGGCGGGTCCGCC+GGG | - | chr6_4:26619940-26619959 | None:intergenic | 75.0% | |
| GATAGGAGCGGCGGGTCCGC+CGG | - | chr6_4:26619941-26619960 | None:intergenic | 75.0% | |
| GGCCGGAGCTGGCTGCTCCA+CGG | - | chr6_4:26619995-26620014 | None:intergenic | 75.0% | |
| GAAGACCCGGGGCAGCCGCA+GGG | + | chr6_4:26620102-26620121 | Msa0983500:CDS | 75.0% | |
| TTGGACCCTGCGGCTGCCCC+GGG | - | chr6_4:26620110-26620129 | None:intergenic | 75.0% | |
| ! | TAGGAGCGGCGGGTCCGCCG+GGG | - | chr6_4:26619939-26619958 | None:intergenic | 80.0% |
| ! | GGAAGACCCGGGGCAGCCGC+AGG | + | chr6_4:26620101-26620120 | Msa0983500:CDS | 80.0% |
| ! | GCGGGTCCGCCGGGGCGGGA+AGG | - | chr6_4:26619931-26619950 | None:intergenic | 90.0% |
| ! | AGCGGCGGGTCCGCCGGGGC+GGG | - | chr6_4:26619935-26619954 | None:intergenic | 90.0% |
| ! | GAGCGGCGGGTCCGCCGGGG+CGG | - | chr6_4:26619936-26619955 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 26619868 | 26620281 | 26619868 | ID=Msa0983500;Name=Msa0983500 |
| chr6_4 | mRNA | 26619868 | 26620281 | 26619868 | ID=Msa0983500-mRNA-1;Parent=Msa0983500;Name=Msa0983500-mRNA-1;_AED=0.26;_eAED=0.28;_QI=0|-1|0|1|-1|1|1|0|137 |
| chr6_4 | exon | 26619868 | 26620281 | 26619868 | ID=Msa0983500-mRNA-1:exon:7515;Parent=Msa0983500-mRNA-1 |
| chr6_4 | CDS | 26619868 | 26620281 | 26619868 | ID=Msa0983500-mRNA-1:cds;Parent=Msa0983500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
