AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1436520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1436520 MtrunA17_Chr4g0068091 98.582 282 4 0 1 282 46 327 0.0 578
Msa1436520 MtrunA17_Chr2g0326331 82.787 122 18 2 97 217 1 120 7.31e-70 212
Msa1436520 MtrunA17_Chr2g0326341 79.630 54 11 0 33 86 42 95 2.55e-25 97.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1436520 AT1G03360.1 65.603 282 89 3 1 281 48 322 3.39e-137 390

Find 62 sgRNAs with CRISPR-Local

Find 370 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACGGTATTGATTTAATAAT+TGG 0.183259 tig0027944:+4557 Msa1436520:CDS
TGCATCGTCTTCTGTTCTTA+TGG 0.184384 tig0027944:+5206 Msa1436520:three_prime_UTR
TAAATAGCTCCATAAAATTT+TGG 0.206706 tig0027944:-5317 None:intergenic
TTCTGCCTCTTCACTAAATA+TGG 0.233526 tig0027944:-4509 None:intergenic
GTTAGAGTATTATCTACTTT+AGG 0.298550 tig0027944:+4764 Msa1436520:CDS
AATCATGTTTGATACTTTGT+AGG 0.300249 tig0027944:+5035 Msa1436520:three_prime_UTR
GCATCGTCTTCTGTTCTTAT+GGG 0.303890 tig0027944:+5207 Msa1436520:three_prime_UTR
ATTTAATAATTGGCTGTAAT+GGG 0.331979 tig0027944:+4567 Msa1436520:CDS
TGGTTCCGAGTTCTGTGTTC+TGG 0.332549 tig0027944:+4865 Msa1436520:CDS
TTGGCTGTAATGGGTTCATA+TGG 0.334973 tig0027944:+4576 Msa1436520:CDS
GATTTAATAATTGGCTGTAA+TGG 0.340846 tig0027944:+4566 Msa1436520:CDS
CAATACCGTACTGCTCTATA+TGG 0.346702 tig0027944:-4544 None:intergenic
GAGGTTGGTGACATTGTTAT+TGG 0.373464 tig0027944:+288 Msa1436520:CDS
TGCTCAGAAGCGTTGGAGAT+TGG 0.380676 tig0027944:+411 Msa1436520:CDS
CTTGCACCTGCGGGGAGATG+TGG 0.409760 tig0027944:+5102 Msa1436520:three_prime_UTR
AGGTTGGTGACATTGTTATT+GGG 0.422995 tig0027944:+289 Msa1436520:CDS
GTAATGGGTTCATATGGGTT+GGG 0.429426 tig0027944:+4582 Msa1436520:CDS
GTTAAAGCTCTTGCACCTGC+GGG 0.438119 tig0027944:+5093 Msa1436520:three_prime_UTR
ATCATGTTTGATACTTTGTA+GGG 0.444314 tig0027944:+5036 Msa1436520:three_prime_UTR
GTAGGGTGGCACTTAAAAGT+TGG 0.464300 tig0027944:+5053 Msa1436520:three_prime_UTR
GTGTTATTGCAGCTTAGTAC+TGG 0.468619 tig0027944:+4467 Msa1436520:intron
AAAAGACAGACATGGGTTGT+AGG 0.469764 tig0027944:-5176 None:intergenic
GCCATGATTTAGTATACAAA+AGG 0.470847 tig0027944:-5245 None:intergenic
TTGCACCTGCGGGGAGATGT+GGG 0.480487 tig0027944:+5103 Msa1436520:three_prime_UTR
CAAAATACCTGTACACCATC+AGG 0.485161 tig0027944:-484 None:intergenic
TGTAATGGGTTCATATGGGT+TGG 0.507430 tig0027944:+4581 Msa1436520:CDS
AGACAAGAAAGTACATATGC+AGG 0.515241 tig0027944:+4729 Msa1436520:CDS
TGTCCACAGGCTGAAGTTCG+TGG 0.517452 tig0027944:+4027 Msa1436520:intron
TATAACATCGGAAATCATCA+AGG 0.519948 tig0027944:+4793 Msa1436520:CDS
TTAAAACCTGTGGATCAGAT+TGG 0.524228 tig0027944:-4649 None:intergenic
CCTGAAAAGCAAGGTGGCAA+CGG 0.534832 tig0027944:-5147 None:intergenic
TGGAGCTATTTAAATTGTAG+TGG 0.536304 tig0027944:+5328 Msa1436520:three_prime_UTR
CTTGATATACACGACATGCT+TGG 0.537424 tig0027944:+4845 Msa1436520:CDS
TGTAGGTTGCTCAGAAGCGT+TGG 0.537717 tig0027944:+404 Msa1436520:intron
CTTTCCACTGCTAGAGGCGA+AGG 0.547412 tig0027944:+3875 Msa1436520:intron
TTTAGGATTCATTATAACAT+CGG 0.551488 tig0027944:+4781 Msa1436520:CDS
TGTTATTGGGCGTGTCATTG+AGG 0.552525 tig0027944:+302 Msa1436520:CDS
GAACATGCCTGATGGTGTAC+AGG 0.553150 tig0027944:+477 Msa1436520:CDS
TGTTAAAGCTCTTGCACCTG+CGG 0.559542 tig0027944:+5092 Msa1436520:three_prime_UTR
TAATGGGTTCATATGGGTTG+GGG 0.559641 tig0027944:+4583 Msa1436520:CDS
AGTGAACCAATCTGATCCAC+AGG 0.562822 tig0027944:+4643 Msa1436520:CDS
TCACACCATATTTAGTGAAG+AGG 0.571266 tig0027944:+4504 Msa1436520:CDS
TTATTGGGAGTTAAAACCTG+TGG 0.572686 tig0027944:-4659 None:intergenic
ATAACAATGTCACCAACCTC+AGG 0.577851 tig0027944:-285 None:intergenic
GGTAACCAGAACACAGAACT+CGG 0.579389 tig0027944:-4870 None:intergenic
TCTGCTATGAACATGCCTGA+TGG 0.579601 tig0027944:+469 Msa1436520:CDS
TGGCTGTAATGGGTTCATAT+GGG 0.580058 tig0027944:+4577 Msa1436520:CDS
TTCAGGTACAAACCTGAGGT+TGG 0.581754 tig0027944:+273 Msa1436520:intron
GTATATCAAGATTCGCAGAA+AGG 0.583884 tig0027944:-4832 None:intergenic
GACAAGAAAGTACATATGCA+GGG 0.586584 tig0027944:+4730 Msa1436520:CDS
ATGTTTGATACTTTGTAGGG+TGG 0.604286 tig0027944:+5039 Msa1436520:three_prime_UTR
TTCATCCCACATCTCCCCGC+AGG 0.604886 tig0027944:-5108 None:intergenic
GGTGGCACTTAAAAGTTGGA+TGG 0.605315 tig0027944:+5057 Msa1436520:three_prime_UTR
TACCGTACTGCTCTATATGG+TGG 0.611910 tig0027944:-4541 None:intergenic
TGTTGAAGTCAGAGATGACA+TGG 0.636734 tig0027944:+4610 Msa1436520:CDS
TAATTTCAGGTACAAACCTG+AGG 0.641535 tig0027944:+269 Msa1436520:intron
AGCGGTAGATTGTGAAATCG+TGG 0.646556 tig0027944:+4930 Msa1436520:exon
ATAACATCGGAAATCATCAA+GGG 0.651590 tig0027944:+4794 Msa1436520:CDS
AGGTGTCACCCTGAAAAGCA+AGG 0.671719 tig0027944:-5156 None:intergenic
TTCCACCATATAGAGCAGTA+CGG 0.679178 tig0027944:+4539 Msa1436520:CDS
TTAAAGCTCTTGCACCTGCG+GGG 0.692107 tig0027944:+5094 Msa1436520:three_prime_UTR
TGTCACCCTGAAAAGCAAGG+TGG 0.777879 tig0027944:-5153 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAATTTCTTAAAGAAA+TGG - tig0027944:589-608 None:intergenic 10.0%
!! AATTCAATTTAAACAAAAAT+TGG - tig0027944:3120-3139 None:intergenic 10.0%
!!! AATTTTTGTTTAAATTGAAT+TGG + tig0027944:3119-3138 Msa1436520:intron 10.0%
!! AAACAAAAACATAACAATTA+AGG - tig0027944:229-248 None:intergenic 15.0%
!!! TTATTGAATGTAATTTTCAT+GGG - tig0027944:946-965 None:intergenic 15.0%
!!! TTTATTGAATGTAATTTTCA+TGG - tig0027944:947-966 None:intergenic 15.0%
!! ATAAAGATATTATGAAGTAT+AGG + tig0027944:962-981 Msa1436520:intron 15.0%
!! TTAAAAATTAAAGGCAATAT+GGG - tig0027944:1326-1345 None:intergenic 15.0%
!! TTTAAAAATTAAAGGCAATA+TGG - tig0027944:1327-1346 None:intergenic 15.0%
!! CAATAACGTTTAAAAATTAA+AGG - tig0027944:1335-1354 None:intergenic 15.0%
!!! AATTAAAAGTGATTTTGTAA+TGG + tig0027944:1775-1794 Msa1436520:intron 15.0%
!! TGAATTAAATAAACAAGTAA+TGG - tig0027944:2496-2515 None:intergenic 15.0%
!!! TTAAGATTTACTTTTTATGA+AGG + tig0027944:3974-3993 Msa1436520:intron 15.0%
!!! CAATAAAAGAATGTTTTAAA+AGG - tig0027944:4122-4141 None:intergenic 15.0%
!!! GTTATGTTTTTGTTTGTTAA+TGG + tig0027944:234-253 Msa1436520:intron 20.0%
!! ATCAAATCAAATTCAGAAAA+TGG - tig0027944:348-367 None:intergenic 20.0%
!!! TAATGTTTGTTTAATTTCAC+TGG + tig0027944:367-386 Msa1436520:intron 20.0%
!! AAAAAAAGATATCTGCATAA+GGG - tig0027944:516-535 None:intergenic 20.0%
!! AAAAAAAAGATATCTGCATA+AGG - tig0027944:517-536 None:intergenic 20.0%
!!! AGTTATTTTTCAGAAATGAA+AGG + tig0027944:615-634 Msa1436520:intron 20.0%
!!! ATTAAACACTTTTTCATCTA+GGG - tig0027944:863-882 None:intergenic 20.0%
!!! AATTAAACACTTTTTCATCT+AGG - tig0027944:864-883 None:intergenic 20.0%
!!! TACATTTAAAACTATATGAC+AGG - tig0027944:890-909 None:intergenic 20.0%
!!! TATTGAATGTAATTTTCATG+GGG - tig0027944:945-964 None:intergenic 20.0%
!! TTAAACGTTATTGAGTATTA+TGG + tig0027944:1342-1361 Msa1436520:intron 20.0%
!! TAAACGTTATTGAGTATTAT+GGG + tig0027944:1343-1362 Msa1436520:intron 20.0%
!! TACATCAAAAATCCAAAAAT+AGG - tig0027944:1454-1473 None:intergenic 20.0%
!!! AAACTTGCAATATTTTATTC+AGG - tig0027944:1707-1726 None:intergenic 20.0%
!! AAATGTCAACATTAAATCAA+CGG - tig0027944:2712-2731 None:intergenic 20.0%
!!! ATGGTTTTGTAATTTGTTAT+TGG - tig0027944:2930-2949 None:intergenic 20.0%
!! ATACTTTGTTAATAACAAGA+TGG - tig0027944:2949-2968 None:intergenic 20.0%
!! TAATTCACAATAGTGAAATT+GGG - tig0027944:3081-3100 None:intergenic 20.0%
!! TTAATTCACAATAGTGAAAT+TGG - tig0027944:3082-3101 None:intergenic 20.0%
!! TTTAAACAAAAATTGGCAAT+AGG - tig0027944:3113-3132 None:intergenic 20.0%
!!! TAAATTTTATCGAATGAGAT+TGG + tig0027944:3155-3174 Msa1436520:intron 20.0%
!! TTGATGTTATATAACAAAGT+AGG + tig0027944:3271-3290 Msa1436520:intron 20.0%
!! ATGCAATTGTAAAACAATTA+TGG + tig0027944:3675-3694 Msa1436520:intron 20.0%
!!! GTTTTTATAAGCACAAAAAT+AGG + tig0027944:3730-3749 Msa1436520:intron 20.0%
!! GAAAGAAAAAATCTAAATGA+GGG - tig0027944:3860-3879 None:intergenic 20.0%
!! AAAGTAAATCTTAAGAAACA+TGG - tig0027944:3968-3987 None:intergenic 20.0%
!! CTACAAAAAAAAATGATAGT+CGG + tig0027944:4162-4181 Msa1436520:intron 20.0%
!! CTTACAAATATAAAACTGAA+CGG + tig0027944:4250-4269 Msa1436520:intron 20.0%
!!! TTACTTTATTTTGATAGCTA+TGG + tig0027944:4329-4348 Msa1436520:intron 20.0%
!!! TTGTATTTTGTAATACGTTT+TGG + tig0027944:4382-4401 Msa1436520:intron 20.0%
!!! TGTATTTTGTAATACGTTTT+GGG + tig0027944:4383-4402 Msa1436520:intron 20.0%
!!! TACGGTATTGATTTAATAAT+TGG + tig0027944:4557-4576 Msa1436520:CDS 20.0%
!! ATTTAATAATTGGCTGTAAT+GGG + tig0027944:4567-4586 Msa1436520:CDS 20.0%
!!! TTTAGGATTCATTATAACAT+CGG + tig0027944:4781-4800 Msa1436520:CDS 20.0%
!!! TTTTTCTTTCATTGTAAACT+CGG + tig0027944:5293-5312 Msa1436520:three_prime_UTR 20.0%
!!! TAAATAGCTCCATAAAATTT+TGG - tig0027944:5320-5339 None:intergenic 20.0%
! AAACATAACAATTAAGGAAG+TGG - tig0027944:223-242 None:intergenic 25.0%
!!! CTTTTTTTTTGTTCTGCAAT+CGG + tig0027944:528-547 Msa1436520:intron 25.0%
!!! CCTAAATTTTGAAAAAGGAA+CGG - tig0027944:565-584 None:intergenic 25.0%
!!! ATGGTCCTAAATTTTGAAAA+AGG - tig0027944:570-589 None:intergenic 25.0%
!! ACGAGACAAAATTTTCAATT+TGG + tig0027944:1045-1064 Msa1436520:intron 25.0%
! AAACGTTATTGAGTATTATG+GGG + tig0027944:1344-1363 Msa1436520:intron 25.0%
! ATCAAAAATCCAAAAATAGG+AGG - tig0027944:1451-1470 None:intergenic 25.0%
! TTTGTAATGAAACACTAAAC+TGG - tig0027944:1539-1558 None:intergenic 25.0%
!! TGCAAAATTTCTACAGTTTT+AGG + tig0027944:1671-1690 Msa1436520:intron 25.0%
!!! GTGATCTATTTTTATTGGTT+GGG + tig0027944:1843-1862 Msa1436520:intron 25.0%
!!! TGATCTATTTTTATTGGTTG+GGG + tig0027944:1844-1863 Msa1436520:intron 25.0%
! AAGACTATTGATATCTAAGA+AGG + tig0027944:2007-2026 Msa1436520:intron 25.0%
! ACAATTATATGACAAGTACA+AGG + tig0027944:2169-2188 Msa1436520:intron 25.0%
! TTAACCAATGTTTCATCAAT+AGG + tig0027944:2429-2448 Msa1436520:intron 25.0%
! ATCATATACCAAGTAATAGA+AGG + tig0027944:2515-2534 Msa1436520:intron 25.0%
! TAATGTTGACATTTGAGAAA+AGG + tig0027944:2718-2737 Msa1436520:intron 25.0%
! AATGTTGACATTTGAGAAAA+GGG + tig0027944:2719-2738 Msa1436520:intron 25.0%
!! AATGGCATTTTGCAATAATA+GGG - tig0027944:2826-2845 None:intergenic 25.0%
!!! TTGTAATTTGTTATTGGATG+TGG - tig0027944:2924-2943 None:intergenic 25.0%
!! TGTATCACTCTTTGATTTAT+AGG - tig0027944:3033-3052 None:intergenic 25.0%
! TATTGATCAAAGTAACAGTT+GGG + tig0027944:3054-3073 Msa1436520:intron 25.0%
!! AAGATCCAAAATTTTACTAG+AGG - tig0027944:3244-3263 None:intergenic 25.0%
!! TAATGCTTTAAGTCCAATTA+GGG - tig0027944:3464-3483 None:intergenic 25.0%
!! ATAATGCTTTAAGTCCAATT+AGG - tig0027944:3465-3484 None:intergenic 25.0%
! TTCAAAGAAACTAATAGAAC+AGG + tig0027944:3636-3655 Msa1436520:intron 25.0%
! TCAAAGAAACTAATAGAACA+GGG + tig0027944:3637-3656 Msa1436520:intron 25.0%
! TGTGCTTATAAAAACTTCAA+AGG - tig0027944:3725-3744 None:intergenic 25.0%
! GGAAAGAAAAAATCTAAATG+AGG - tig0027944:3861-3880 None:intergenic 25.0%
! AAGAAGTCAAAAATATGGAA+AGG + tig0027944:4080-4099 Msa1436520:CDS 25.0%
! AATGGAAACTCTAAATCATA+TGG + tig0027944:4218-4237 Msa1436520:intron 25.0%
! ATGGAAACTCTAAATCATAT+GGG + tig0027944:4219-4238 Msa1436520:intron 25.0%
! GATTTAATAATTGGCTGTAA+TGG + tig0027944:4566-4585 Msa1436520:CDS 25.0%
!! AGACTCACAGAATTTTTATT+GGG - tig0027944:4677-4696 None:intergenic 25.0%
!! AAGACTCACAGAATTTTTAT+TGG - tig0027944:4678-4697 None:intergenic 25.0%
!! GTTAGAGTATTATCTACTTT+AGG + tig0027944:4764-4783 Msa1436520:CDS 25.0%
! AATCATGTTTGATACTTTGT+AGG + tig0027944:5035-5054 Msa1436520:three_prime_UTR 25.0%
! ATCATGTTTGATACTTTGTA+GGG + tig0027944:5036-5055 Msa1436520:three_prime_UTR 25.0%
!! TCCTTTTGTATACTAAATCA+TGG + tig0027944:5244-5263 Msa1436520:three_prime_UTR 25.0%
GAATCTTGTGACTTAATTTC+AGG + tig0027944:256-275 Msa1436520:intron 30.0%
!!! CCGTTCCTTTTTCAAAATTT+AGG + tig0027944:562-581 Msa1436520:intron 30.0%
!!! AGGCGTAGTCATTTTTAATT+TGG + tig0027944:836-855 Msa1436520:intron 30.0%
GGGTTACAATAGTTAATAAC+AGG - tig0027944:925-944 None:intergenic 30.0%
! ACATGACAGTCTTTTCAATT+TGG - tig0027944:990-1009 None:intergenic 30.0%
TTGAAAAGACTGTCATGTTT+AGG + tig0027944:992-1011 Msa1436520:intron 30.0%
TGAAAAGACTGTCATGTTTA+GGG + tig0027944:993-1012 Msa1436520:intron 30.0%
CAGCTACTTCTTCAAAAAAT+TGG - tig0027944:1486-1505 None:intergenic 30.0%
!!! TTCTACAGTTTTAGGAGTAA+AGG + tig0027944:1679-1698 Msa1436520:intron 30.0%
ATATTGCAAGTTTGTGTGTT+AGG + tig0027944:1714-1733 Msa1436520:intron 30.0%
!!! TAAGGTGGATTTTGAGTTTT+TGG + tig0027944:1817-1836 Msa1436520:intron 30.0%
!!! AAGGTGGATTTTGAGTTTTT+GGG + tig0027944:1818-1837 Msa1436520:intron 30.0%
!!! GGTGATCTATTTTTATTGGT+TGG + tig0027944:1842-1861 Msa1436520:intron 30.0%
AGTTATTGAGCTTATGCTAT+TGG + tig0027944:1882-1901 Msa1436520:intron 30.0%
! CTTAGATATCAATAGTCTTG+TGG - tig0027944:2006-2025 None:intergenic 30.0%
CTATTGATATCTAAGAAGGA+TGG + tig0027944:2011-2030 Msa1436520:intron 30.0%
GTAATGACTAAATTAGCAGT+CGG - tig0027944:2141-2160 None:intergenic 30.0%
CTTCTTATCCTTCTATTACT+TGG - tig0027944:2526-2545 None:intergenic 30.0%
! CAATGGCATTTTGCAATAAT+AGG - tig0027944:2827-2846 None:intergenic 30.0%
! GTATTGATCAAAGTAACAGT+TGG + tig0027944:3053-3072 Msa1436520:intron 30.0%
!! TATCGAATGAGATTGGTTTA+AGG + tig0027944:3162-3181 Msa1436520:intron 30.0%
! TAGGACCTCTAGTAAAATTT+TGG + tig0027944:3236-3255 Msa1436520:intron 30.0%
TATGACCTGAATTGTGTATT+TGG + tig0027944:3486-3505 Msa1436520:intron 30.0%
TAAGCACAAAAATAGGAACA+AGG + tig0027944:3737-3756 Msa1436520:intron 30.0%
!!! AATCACCTTCAGTTTTGATT+GGG + tig0027944:3763-3782 Msa1436520:intron 30.0%
! TATATGCTGCGTCATATTTT+TGG + tig0027944:3807-3826 Msa1436520:intron 30.0%
!! AGGGATTTTCAAGCTTAATT+GGG - tig0027944:3841-3860 None:intergenic 30.0%
!! AAATATGCGCTGTATTTTTG+AGG + tig0027944:3915-3934 Msa1436520:CDS 30.0%
!!! ATTTTTGACTTCTTGCTTGA+AGG - tig0027944:4074-4093 None:intergenic 30.0%
CAAGCAAGAAGTCAAAAATA+TGG + tig0027944:4075-4094 Msa1436520:CDS 30.0%
TATGGAAAGGTTTGTATTCT+TGG + tig0027944:4093-4112 Msa1436520:intron 30.0%
CCATTAGTAACAGTAGTAAA+TGG - tig0027944:4441-4460 None:intergenic 30.0%
CCATTTACTACTGTTACTAA+TGG + tig0027944:4438-4457 Msa1436520:intron 30.0%
! AGAACAAGAGAAAAAGTACA+CGG + tig0027944:4700-4719 Msa1436520:CDS 30.0%
TATAACATCGGAAATCATCA+AGG + tig0027944:4793-4812 Msa1436520:CDS 30.0%
ATAACATCGGAAATCATCAA+GGG + tig0027944:4794-4813 Msa1436520:CDS 30.0%
GAAGCTCAAATAAAAAGAAG+CGG + tig0027944:4912-4931 Msa1436520:CDS 30.0%
!!! AAGTTTTATTATCCCTTTGC+CGG + tig0027944:4963-4982 Msa1436520:three_prime_UTR 30.0%
CAAAAACAAAAGACAGACAT+GGG - tig0027944:5186-5205 None:intergenic 30.0%
ACAAAAACAAAAGACAGACA+TGG - tig0027944:5187-5206 None:intergenic 30.0%
GCCATGATTTAGTATACAAA+AGG - tig0027944:5248-5267 None:intergenic 30.0%
! AAACTCGGACCAAAATTTTA+TGG + tig0027944:5308-5327 Msa1436520:three_prime_UTR 30.0%
TGGAGCTATTTAAATTGTAG+TGG + tig0027944:5328-5347 Msa1436520:three_prime_UTR 30.0%
TAACAATTAAGGAAGTGGAG+AGG - tig0027944:218-237 None:intergenic 35.0%
! TAATTTCAGGTACAAACCTG+AGG + tig0027944:269-288 Msa1436520:intron 35.0%
!! AGGTTGGTGACATTGTTATT+GGG + tig0027944:289-308 Msa1436520:CDS 35.0%
ACAAAAACTAGTTCAGTGTG+CGG + tig0027944:645-664 Msa1436520:intron 35.0%
ACTATAGTCAAATAACCTCC+AGG - tig0027944:755-774 None:intergenic 35.0%
! TGTGTTTCTTTTCTCTATGC+AGG + tig0027944:816-835 Msa1436520:intron 35.0%
TATCACCACTTCTAAATGTC+AGG - tig0027944:1072-1091 None:intergenic 35.0%
CCATTTGTAGTGACTTTGTT+CGG + tig0027944:1564-1583 Msa1436520:intron 35.0%
TTTGTGTGTTAGGTTTCCTT+TGG + tig0027944:1724-1743 Msa1436520:intron 35.0%
TTGTGTGTTAGGTTTCCTTT+GGG + tig0027944:1725-1744 Msa1436520:intron 35.0%
!!! GGGTGGTGATCTATTTTTAT+TGG + tig0027944:1838-1857 Msa1436520:intron 35.0%
! TAGTCTTTAGAGGTAAAGTG+CGG - tig0027944:2083-2102 None:intergenic 35.0%
! CTTTACCTCTAAAGACTACA+TGG + tig0027944:2085-2104 Msa1436520:intron 35.0%
TATCACCATGTAGTCTTTAG+AGG - tig0027944:2093-2112 None:intergenic 35.0%
TCTTTCTTTCTTCGCAAAGA+TGG - tig0027944:2230-2249 None:intergenic 35.0%
TTCTGAGCAATTCTCTTAAC+AGG - tig0027944:2652-2671 None:intergenic 35.0%
! TAAAAAACTTTGAGAGCCGA+CGG - tig0027944:2307-2326 None:intergenic 35.0%
! GTTTCTTTAAGAGAAGGAAG+TGG - tig0027944:2362-2381 None:intergenic 35.0%
CTTCCTTCTCTTAAAGAAAC+TGG + tig0027944:2362-2381 Msa1436520:intron 35.0%
! AAGCCAGTTTCTTTAAGAGA+AGG - tig0027944:2368-2387 None:intergenic 35.0%
AGAGCCTATTGATGAAACAT+TGG - tig0027944:2436-2455 None:intergenic 35.0%
AAGCCAATTTCTTGAAGAGA+AGG + tig0027944:2543-2562 Msa1436520:intron 35.0%
CTTCCTTCTCTTCAAGAAAT+TGG - tig0027944:2549-2568 None:intergenic 35.0%
TAAGAGAATTGCTCAGAAGA+TGG - tig0027944:2261-2280 None:intergenic 35.0%
TCTTTCTTTCCTCGTAAAGA+TGG + tig0027944:2681-2700 Msa1436520:intron 35.0%
TGCAAATGGGAGTTATTTGA+TGG + tig0027944:2778-2797 Msa1436520:intron 35.0%
TGCCATTGAAATTCAGAAGT+TGG + tig0027944:2839-2858 Msa1436520:intron 35.0%
CTCCAACTTCTGAATTTCAA+TGG - tig0027944:2844-2863 None:intergenic 35.0%
TTCAGAAGTTGGAGATATAG+TGG + tig0027944:2850-2869 Msa1436520:intron 35.0%
!! AATGAGATTGGTTTAAGGTC+TGG + tig0027944:3167-3186 Msa1436520:intron 35.0%
!! ATGAGATTGGTTTAAGGTCT+GGG + tig0027944:3168-3187 Msa1436520:intron 35.0%
! CAGTGTTTGGCTTAAAATTC+TGG + tig0027944:3192-3211 Msa1436520:intron 35.0%
! TTTGGCTTAAAATTCTGGTC+TGG + tig0027944:3197-3216 Msa1436520:intron 35.0%
TTGGCTTAAAATTCTGGTCT+GGG + tig0027944:3198-3217 Msa1436520:intron 35.0%
!!! CCTTTTTTTTAGCTCGTGTT+CGG - tig0027944:3351-3370 None:intergenic 35.0%
CCAAACCAAATACACAATTC+AGG - tig0027944:3494-3513 None:intergenic 35.0%
CCTGAATTGTGTATTTGGTT+TGG + tig0027944:3491-3510 Msa1436520:intron 35.0%
! TGGTTTGGATCAACATTTGA+TGG + tig0027944:3506-3525 Msa1436520:intron 35.0%
!! TGAAGTGGGTATACTGATTT+AGG + tig0027944:3548-3567 Msa1436520:intron 35.0%
TGATTAGTGTTTCTTCATGC+AGG - tig0027944:3588-3607 None:intergenic 35.0%
AAACTAATAGAACAGGGTGA+GGG + tig0027944:3643-3662 Msa1436520:intron 35.0%
!! CAATCACCTTCAGTTTTGAT+TGG + tig0027944:3762-3781 Msa1436520:intron 35.0%
AGAAACCCAATCAAAACTGA+AGG - tig0027944:3771-3790 None:intergenic 35.0%
!! GAGGGATTTTCAAGCTTAAT+TGG - tig0027944:3842-3861 None:intergenic 35.0%
!!! TTTTTTCTTTCCACTGCTAG+AGG + tig0027944:3869-3888 Msa1436520:intron 35.0%
ATTACACCTCAATCGTAAAC+AGG - tig0027944:4286-4305 None:intergenic 35.0%
TCACACCATATTTAGTGAAG+AGG + tig0027944:4504-4523 Msa1436520:CDS 35.0%
TTCTGCCTCTTCACTAAATA+TGG - tig0027944:4512-4531 None:intergenic 35.0%
TTAAAACCTGTGGATCAGAT+TGG - tig0027944:4652-4671 None:intergenic 35.0%
TTATTGGGAGTTAAAACCTG+TGG - tig0027944:4662-4681 None:intergenic 35.0%
! AGACAAGAAAGTACATATGC+AGG + tig0027944:4729-4748 Msa1436520:CDS 35.0%
! GACAAGAAAGTACATATGCA+GGG + tig0027944:4730-4749 Msa1436520:CDS 35.0%
GTATATCAAGATTCGCAGAA+AGG - tig0027944:4835-4854 None:intergenic 35.0%
!!! AGTTTTATTATCCCTTTGCC+GGG + tig0027944:4964-4983 Msa1436520:three_prime_UTR 35.0%
!!! TTCCTTTCCTATTTTTACCC+CGG - tig0027944:4985-5004 None:intergenic 35.0%
ATGTTTGATACTTTGTAGGG+TGG + tig0027944:5039-5058 Msa1436520:three_prime_UTR 35.0%
!! GGATGAAGTGTTTTTCTGAT+TGG + tig0027944:5124-5143 Msa1436520:three_prime_UTR 35.0%
GCTGCATAGGTTAAGAAGTA+AGG - tig0027944:134-153 None:intergenic 40.0%
ATAACAATGTCACCAACCTC+AGG - tig0027944:288-307 None:intergenic 40.0%
!! GAGGTTGGTGACATTGTTAT+TGG + tig0027944:288-307 Msa1436520:CDS 40.0%
CAAAATACCTGTACACCATC+AGG - tig0027944:487-506 None:intergenic 40.0%
! TTGTTGACCTTGTTTCATCC+TGG + tig0027944:734-753 Msa1436520:intron 40.0%
ATAACCTCCAGGATGAAACA+AGG - tig0027944:744-763 None:intergenic 40.0%
TTGGTCCTGACATTTAGAAG+TGG + tig0027944:1064-1083 Msa1436520:intron 40.0%
TTGTACAGCTGTATGCATCT+TGG + tig0027944:1138-1157 Msa1436520:intron 40.0%
! ATCTTGGTAGTCAATAGCAG+TGG + tig0027944:1154-1173 Msa1436520:intron 40.0%
!! GTTTGGTGCAGCTCATATTA+AGG + tig0027944:1228-1247 Msa1436520:intron 40.0%
ACGAAGGAGAGAAGAATACT+GGG - tig0027944:1385-1404 None:intergenic 40.0%
! AGCTTCATGCCTCCTATTTT+TGG + tig0027944:1439-1458 Msa1436520:intron 40.0%
CCGAACAAAGTCACTACAAA+TGG - tig0027944:1567-1586 None:intergenic 40.0%
CTTTGTCGTGTTCTCTAGTT+AGG + tig0027944:1589-1608 Msa1436520:intron 40.0%
TCGTGTTCTCTAGTTAGGAA+GGG + tig0027944:1594-1613 Msa1436520:intron 40.0%
!!! GGGGGAAGTTATTGGTTTTT+TGG + tig0027944:1614-1633 Msa1436520:intron 40.0%
TTACACTAGACCATGTTGAG+AGG + tig0027944:1646-1665 Msa1436520:intron 40.0%
! ATTTTGCAAGCCTCTCAACA+TGG - tig0027944:1659-1678 None:intergenic 40.0%
TTTCCTTTGGGTGGATGAAT+TGG + tig0027944:1737-1756 Msa1436520:intron 40.0%
GTGACCATGTGAAAGTAGTA+AGG + tig0027944:1799-1818 Msa1436520:intron 40.0%
ACCATGTGAAAGTAGTAAGG+TGG + tig0027944:1802-1821 Msa1436520:intron 40.0%
TCCACCTTACTACTTTCACA+TGG - tig0027944:1806-1825 None:intergenic 40.0%
!!! GTGGATTTTGAGTTTTTGGG+TGG + tig0027944:1821-1840 Msa1436520:intron 40.0%
AGAAGGATGGTCTATTATCC+AGG + tig0027944:2024-2043 Msa1436520:intron 40.0%
AATGTTCTCGAGCTTCTTGA+AGG - tig0027944:2053-2072 None:intergenic 40.0%
! AAAAAACTTTGAGAGCCGAC+GGG - tig0027944:2306-2325 None:intergenic 40.0%
ATTGGGATACGGTTTCTATC+AGG - tig0027944:2335-2354 None:intergenic 40.0%
GAAGTGGATGTATTGGGATA+CGG - tig0027944:2346-2365 None:intergenic 40.0%
GAGAAGGAAGTGGATGTATT+GGG - tig0027944:2352-2371 None:intergenic 40.0%
AGAGAAGGAAGTGGATGTAT+TGG - tig0027944:2353-2372 None:intergenic 40.0%
TGTTTCATCAATAGGCTCTC+TGG + tig0027944:2437-2456 Msa1436520:intron 40.0%
!! GAGAAGGAAGTTGATGTCTT+CGG + tig0027944:2559-2578 Msa1436520:intron 40.0%
!! AGAAGGAAGTTGATGTCTTC+GGG + tig0027944:2560-2579 Msa1436520:intron 40.0%
CATGTCCTCTCTTTGTGATT+TGG + tig0027944:2624-2643 Msa1436520:intron 40.0%
TGACATTTGAGAAAAGGGAG+TGG + tig0027944:2724-2743 Msa1436520:intron 40.0%
GACATTTGAGAAAAGGGAGT+GGG + tig0027944:2725-2744 Msa1436520:intron 40.0%
TGTTGTGAGGCTATTGCAAA+TGG + tig0027944:2764-2783 Msa1436520:intron 40.0%
GTTGTGAGGCTATTGCAAAT+GGG + tig0027944:2765-2784 Msa1436520:intron 40.0%
AGAAGTTGGAGATATAGTGG+AGG + tig0027944:2853-2872 Msa1436520:intron 40.0%
TAGTGGAGGCTTATGTTACT+TGG + tig0027944:2867-2886 Msa1436520:intron 40.0%
! TGTTTTCACATGTGCCACAT+CGG + tig0027944:2977-2996 Msa1436520:intron 40.0%
!! TGAGATTGGTTTAAGGTCTG+GGG + tig0027944:3169-3188 Msa1436520:intron 40.0%
CCGAACACGAGCTAAAAAAA+AGG + tig0027944:3348-3367 Msa1436520:intron 40.0%
! CGACTCGACTCGTTAAAAAT+TGG - tig0027944:3403-3422 None:intergenic 40.0%
! CAGATGAGTTCGATTTGACT+CGG + tig0027944:3427-3446 Msa1436520:intron 40.0%
GAAACTAATAGAACAGGGTG+AGG + tig0027944:3642-3661 Msa1436520:intron 40.0%
AACTAATAGAACAGGGTGAG+GGG + tig0027944:3644-3663 Msa1436520:intron 40.0%
!! TATGCGCTGTATTTTTGAGG+AGG + tig0027944:3918-3937 Msa1436520:CDS 40.0%
! GCAGATGTCATTTGTGTAAG+TGG + tig0027944:3940-3959 Msa1436520:intron 40.0%
CCTGTGGACATACATAGTTT+AGG - tig0027944:4017-4036 None:intergenic 40.0%
CCTAAACTATGTATGTCCAC+AGG + tig0027944:4014-4033 Msa1436520:intron 40.0%
! CATTTTGTACTGTCTCTGAC+CGG - tig0027944:4202-4221 None:intergenic 40.0%
GAACTACCTGTTTACGATTG+AGG + tig0027944:4277-4296 Msa1436520:intron 40.0%
AATGCAAGATTCCTGGAATC+AGG + tig0027944:4303-4322 Msa1436520:intron 40.0%
ATGCAAGATTCCTGGAATCA+GGG + tig0027944:4304-4323 Msa1436520:intron 40.0%
GCACTTGTAGTGATTGTGTA+TGG + tig0027944:4351-4370 Msa1436520:intron 40.0%
! GTGTTATTGCAGCTTAGTAC+TGG + tig0027944:4467-4486 Msa1436520:intron 40.0%
TTCCACCATATAGAGCAGTA+CGG + tig0027944:4539-4558 Msa1436520:CDS 40.0%
CAATACCGTACTGCTCTATA+TGG - tig0027944:4547-4566 None:intergenic 40.0%
!! TTGGCTGTAATGGGTTCATA+TGG + tig0027944:4576-4595 Msa1436520:CDS 40.0%
!! TGGCTGTAATGGGTTCATAT+GGG + tig0027944:4577-4596 Msa1436520:CDS 40.0%
!! TGTAATGGGTTCATATGGGT+TGG + tig0027944:4581-4600 Msa1436520:CDS 40.0%
!! GTAATGGGTTCATATGGGTT+GGG + tig0027944:4582-4601 Msa1436520:CDS 40.0%
!! TAATGGGTTCATATGGGTTG+GGG + tig0027944:4583-4602 Msa1436520:CDS 40.0%
TGTTGAAGTCAGAGATGACA+TGG + tig0027944:4610-4629 Msa1436520:CDS 40.0%
CTTGATATACACGACATGCT+TGG + tig0027944:4845-4864 Msa1436520:CDS 40.0%
! TGTTCTGGTTACCGAAAAAG+AGG + tig0027944:4880-4899 Msa1436520:CDS 40.0%
TTACCGAAAAAGAGGCTGAA+AGG + tig0027944:4888-4907 Msa1436520:CDS 40.0%
! TCTCCTTTCAGCCTCTTTTT+CGG - tig0027944:4894-4913 None:intergenic 40.0%
!! GTTTTATTATCCCTTTGCCG+GGG + tig0027944:4965-4984 Msa1436520:three_prime_UTR 40.0%
! AAAAGACAGACATGGGTTGT+AGG - tig0027944:5179-5198 None:intergenic 40.0%
TGCATCGTCTTCTGTTCTTA+TGG + tig0027944:5206-5225 Msa1436520:three_prime_UTR 40.0%
GCATCGTCTTCTGTTCTTAT+GGG + tig0027944:5207-5226 Msa1436520:three_prime_UTR 40.0%
CATGAAGACGGTGTACTCAA+GGG + tig0027944:1-20 Msa1436520:CDS 45.0%
ATTACCTTGAGCGTAAAGCG+CGG - tig0027944:108-127 None:intergenic 45.0%
AGTGTCAGTATGTGCTGCAT+AGG - tig0027944:147-166 None:intergenic 45.0%
TTCAGGTACAAACCTGAGGT+TGG + tig0027944:273-292 Msa1436520:intron 45.0%
! TGTTATTGGGCGTGTCATTG+AGG + tig0027944:302-321 Msa1436520:CDS 45.0%
TGGTGTCTGTTGTGTTGTGT+AGG + tig0027944:387-406 Msa1436520:intron 45.0%
TCTGCTATGAACATGCCTGA+TGG + tig0027944:469-488 Msa1436520:CDS 45.0%
! TTGACCTTGTTTCATCCTGG+AGG + tig0027944:737-756 Msa1436520:intron 45.0%
AGAAGTGGTGATAGCACCTA+CGG + tig0027944:1079-1098 Msa1436520:intron 45.0%
TTAAACTCTACACTGCCCGT+AGG - tig0027944:1098-1117 None:intergenic 45.0%
TAGTCAATAGCAGTGGTTCG+CGG + tig0027944:1161-1180 Msa1436520:intron 45.0%
TGCAGCTCATATTAAGGCTG+CGG + tig0027944:1234-1253 Msa1436520:intron 45.0%
AGGCAATATGGGAGTTTCGA+AGG - tig0027944:1315-1334 None:intergenic 45.0%
CACGAAGGAGAGAAGAATAC+TGG - tig0027944:1386-1405 None:intergenic 45.0%
GATGTTCTCTGCAAACACGA+AGG - tig0027944:1401-1420 None:intergenic 45.0%
GTCGTGTTCTCTAGTTAGGA+AGG + tig0027944:1593-1612 Msa1436520:intron 45.0%
CGTGTTCTCTAGTTAGGAAG+GGG + tig0027944:1595-1614 Msa1436520:intron 45.0%
GTGTTCTCTAGTTAGGAAGG+GGG + tig0027944:1596-1615 Msa1436520:intron 45.0%
GTTAGGAAGGGGGAAGTTAT+TGG + tig0027944:1606-1625 Msa1436520:intron 45.0%
TGTGTTAGGTTTCCTTTGGG+TGG + tig0027944:1728-1747 Msa1436520:intron 45.0%
ATGCCAATTCATCCACCCAA+AGG - tig0027944:1743-1762 None:intergenic 45.0%
GTGGTCAATGTTTGACATGC+TGG - tig0027944:1987-2006 None:intergenic 45.0%
CGGGTCATCTCTTTGTGATT+TGG - tig0027944:2287-2306 None:intergenic 45.0%
ATCACAAAGAGATGACCCGT+CGG + tig0027944:2288-2307 Msa1436520:intron 45.0%
GATGGCCAAATCACAAAGAG+AGG - tig0027944:2632-2651 None:intergenic 45.0%
TCGTACTCATGGATGTTGTG+AGG + tig0027944:2751-2770 Msa1436520:intron 45.0%
TTGCTTACCTACTTCCGATG+TGG - tig0027944:2994-3013 None:intergenic 45.0%
AGGTCCTACCAGTTCTTGTT+TGG - tig0027944:3224-3243 None:intergenic 45.0%
! CTGAACCGAACGAGTTGAAT+CGG + tig0027944:3302-3321 Msa1436520:intron 45.0%
! ACAGACCGATTCAACTCGTT+CGG - tig0027944:3310-3329 None:intergenic 45.0%
! GCTTTAAGTCCAATTAGGGC+TGG - tig0027944:3460-3479 None:intergenic 45.0%
GAAGTCTGTCGTCATGAAGT+GGG + tig0027944:3534-3553 Msa1436520:intron 45.0%
! GTTCGTGGTTTTCAGCATGA+TGG + tig0027944:4042-4061 Msa1436520:CDS 45.0%
GTCGGTTACATAACAGTAGC+CGG + tig0027944:4180-4199 Msa1436520:intron 45.0%
CGGTCAGAGACAGTACAAAA+TGG + tig0027944:4200-4219 Msa1436520:intron 45.0%
GAGGTGTAATGCAAGATTCC+TGG + tig0027944:4296-4315 Msa1436520:intron 45.0%
TGCAAGATTCCTGGAATCAG+GGG + tig0027944:4305-4324 Msa1436520:intron 45.0%
TAAAGTAACCCCCTGATTCC+AGG - tig0027944:4317-4336 None:intergenic 45.0%
TACCGTACTGCTCTATATGG+TGG - tig0027944:4544-4563 None:intergenic 45.0%
AGTGAACCAATCTGATCCAC+AGG + tig0027944:4643-4662 Msa1436520:CDS 45.0%
! AGAGAAAAAGTACACGGCAC+TGG + tig0027944:4706-4725 Msa1436520:CDS 45.0%
GGTAACCAGAACACAGAACT+CGG - tig0027944:4873-4892 None:intergenic 45.0%
AGCGGTAGATTGTGAAATCG+TGG + tig0027944:4930-4949 Msa1436520:exon 45.0%
!!! CCTATTTTTACCCCGGCAAA+GGG - tig0027944:4978-4997 None:intergenic 45.0%
!!! TCCTATTTTTACCCCGGCAA+AGG - tig0027944:4979-4998 None:intergenic 45.0%
TGCCGGGGTAAAAATAGGAA+AGG + tig0027944:4980-4999 Msa1436520:three_prime_UTR 45.0%
GTAGGGTGGCACTTAAAAGT+TGG + tig0027944:5053-5072 Msa1436520:three_prime_UTR 45.0%
GGTGGCACTTAAAAGTTGGA+TGG + tig0027944:5057-5076 Msa1436520:three_prime_UTR 45.0%
TGTTAAAGCTCTTGCACCTG+CGG + tig0027944:5092-5111 Msa1436520:three_prime_UTR 45.0%
GAAGTTGTTGCCACTCTCTG+TGG + tig0027944:49-68 Msa1436520:CDS 50.0%
CACTTCACATGTGCCAGTGT+CGG + tig0027944:163-182 Msa1436520:intron 50.0%
TGAACTCGTGAAGACGTGTC+TGG - tig0027944:192-211 None:intergenic 50.0%
! TGTAGGTTGCTCAGAAGCGT+TGG + tig0027944:404-423 Msa1436520:intron 50.0%
!! TGCTCAGAAGCGTTGGAGAT+TGG + tig0027944:411-430 Msa1436520:CDS 50.0%
! GAACATGCCTGATGGTGTAC+AGG + tig0027944:477-496 Msa1436520:CDS 50.0%
GAAGTGGTGATAGCACCTAC+GGG + tig0027944:1080-1099 Msa1436520:intron 50.0%
ACCTGCGAACACACACAGAA+CGG - tig0027944:1260-1279 None:intergenic 50.0%
GGCATGAAGCTTGCAGAAGA+GGG - tig0027944:1430-1449 None:intergenic 50.0%
AGGCATGAAGCTTGCAGAAG+AGG - tig0027944:1431-1450 None:intergenic 50.0%
AGCAGTCGGCGCACATATTA+TGG - tig0027944:2127-2146 None:intergenic 50.0%
!! GAAGTTGATGTCTTCGGGCA+TGG + tig0027944:2565-2584 Msa1436520:intron 50.0%
ACGGTTCTGCCATCTTTACG+AGG - tig0027944:2693-2712 None:intergenic 50.0%
ACATGTGCCACATCGGAAGT+AGG + tig0027944:2984-3003 Msa1436520:intron 50.0%
! TTAAGGTCTGGGGCAGTGTT+TGG + tig0027944:3179-3198 Msa1436520:intron 50.0%
TGGGCCAAACAAGAACTGGT+AGG + tig0027944:3217-3236 Msa1436520:intron 50.0%
GGCTCATTTCCAGCCCTAAT+TGG + tig0027944:3448-3467 Msa1436520:intron 50.0%
CGAAGTCTGTCGTCATGAAG+TGG + tig0027944:3533-3552 Msa1436520:intron 50.0%
AAACCACGAACTTCAGCCTG+TGG - tig0027944:4033-4052 None:intergenic 50.0%
GCAAGATTCCTGGAATCAGG+GGG + tig0027944:4306-4325 Msa1436520:intron 50.0%
TGGTTCCGAGTTCTGTGTTC+TGG + tig0027944:4865-4884 Msa1436520:CDS 50.0%
CCCTTTGCCGGGGTAAAAAT+AGG + tig0027944:4975-4994 Msa1436520:three_prime_UTR 50.0%
GTTAAAGCTCTTGCACCTGC+GGG + tig0027944:5093-5112 Msa1436520:three_prime_UTR 50.0%
TTAAAGCTCTTGCACCTGCG+GGG + tig0027944:5094-5113 Msa1436520:three_prime_UTR 50.0%
CCTGAAAAGCAAGGTGGCAA+CGG - tig0027944:5150-5169 None:intergenic 50.0%
!! CGTTGCCACCTTGCTTTTCA+GGG + tig0027944:5148-5167 Msa1436520:three_prime_UTR 50.0%
TGTCACCCTGAAAAGCAAGG+TGG - tig0027944:5156-5175 None:intergenic 50.0%
! AGGTGTCACCCTGAAAAGCA+AGG - tig0027944:5159-5178 None:intergenic 50.0%
GACGGTGTACTCAAGGGACA+CGG + tig0027944:7-26 Msa1436520:CDS 55.0%
ATGTCCGCGCTTTACGCTCA+AGG + tig0027944:101-120 Msa1436520:CDS 55.0%
TGTGTGTTCGCAGGTCGTAG+TGG + tig0027944:1265-1284 Msa1436520:intron 55.0%
GTGTGTTCGCAGGTCGTAGT+GGG + tig0027944:1266-1285 Msa1436520:intron 55.0%
!! CGAGCTTCTTGAAGGCATCC+TGG - tig0027944:2045-2064 None:intergenic 55.0%
TAGGCTCTCTGGCGTGTTTC+TGG + tig0027944:2448-2467 Msa1436520:intron 55.0%
GGAGTGGGTACTCGTACTCA+TGG + tig0027944:2740-2759 Msa1436520:intron 55.0%
GGTCTGGGCCAAACAAGAAC+TGG + tig0027944:3213-3232 Msa1436520:intron 55.0%
CTTTCCACTGCTAGAGGCGA+AGG + tig0027944:3875-3894 Msa1436520:intron 55.0%
TGTCCACAGGCTGAAGTTCG+TGG + tig0027944:4027-4046 Msa1436520:intron 55.0%
!! CCGTTGCCACCTTGCTTTTC+AGG + tig0027944:5147-5166 Msa1436520:three_prime_UTR 55.0%
AACTTCGCCCTCGAGGTCAG+CGG - tig0027944:35-54 None:intergenic 60.0%
TGGCAACAACTTCGCCCTCG+AGG - tig0027944:42-61 None:intergenic 60.0%
ACGTGTCTGGTGTCCGACAC+TGG - tig0027944:179-198 None:intergenic 60.0%
ATAGCAGTGGTTCGCGGCTC+CGG + tig0027944:1167-1186 Msa1436520:intron 60.0%
TGCACCAAACCACACCACCG+CGG - tig0027944:1218-1237 None:intergenic 60.0%
GCCGTTCTGTGTGTGTTCGC+AGG + tig0027944:1256-1275 Msa1436520:intron 60.0%
CTGTCCTTCGCCTCTAGCAG+TGG - tig0027944:3882-3901 None:intergenic 60.0%
TTGCACCTGCGGGGAGATGT+GGG + tig0027944:5103-5122 Msa1436520:three_prime_UTR 60.0%
TTCATCCCACATCTCCCCGC+AGG - tig0027944:5111-5130 None:intergenic 60.0%
ACACGGAACCGCTGACCTCG+AGG + tig0027944:24-43 Msa1436520:CDS 65.0%
CACGGAACCGCTGACCTCGA+GGG + tig0027944:25-44 Msa1436520:CDS 65.0%
CTCGACGACGCCACAGAGAG+TGG - tig0027944:62-81 None:intergenic 65.0%
CTTGCACCTGCGGGGAGATG+TGG + tig0027944:5102-5121 Msa1436520:three_prime_UTR 65.0%
ATGCTCTGGCGCGATCGCGC+CGG - tig0027944:1189-1208 None:intergenic 70.0%
CGATCGCGCCAGAGCATGGC+TGG + tig0027944:1192-1211 Msa1436520:intron 70.0%
CTGGCCGCGGTGGTGTGGTT+TGG + tig0027944:1211-1230 Msa1436520:intron 70.0%
GGCGCGATCGCGCCAGAGCA+TGG + tig0027944:1188-1207 Msa1436520:intron 75.0%
! CGCCAGAGCATGGCTGGCCG+CGG + tig0027944:1198-1217 Msa1436520:intron 75.0%
CACCGCGGCCAGCCATGCTC+TGG - tig0027944:1203-1222 None:intergenic 75.0%
! CAGAGCATGGCTGGCCGCGG+TGG + tig0027944:1201-1220 Msa1436520:intron 75.0%
! CATGGCTGGCCGCGGTGGTG+TGG + tig0027944:1206-1225 Msa1436520:intron 75.0%
Chromosome Type Strat End Strand Name
tig0027944 gene 1 5362 1 ID=Msa1436520;Name=Msa1436520
tig0027944 mRNA 1 5362 1 ID=Msa1436520-mRNA-1;Parent=Msa1436520;Name=Msa1436520-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|1|1|1|1|1|6|425|282
tig0027944 exon 1 122 1 ID=Msa1436520-mRNA-1:exon:10281;Parent=Msa1436520-mRNA-1
tig0027944 exon 278 323 278 ID=Msa1436520-mRNA-1:exon:10282;Parent=Msa1436520-mRNA-1
tig0027944 exon 409 498 409 ID=Msa1436520-mRNA-1:exon:10283;Parent=Msa1436520-mRNA-1
tig0027944 exon 3889 3954 3889 ID=Msa1436520-mRNA-1:exon:10284;Parent=Msa1436520-mRNA-1
tig0027944 exon 4036 4101 4036 ID=Msa1436520-mRNA-1:exon:10285;Parent=Msa1436520-mRNA-1
tig0027944 exon 4479 5362 4479 ID=Msa1436520-mRNA-1:exon:10286;Parent=Msa1436520-mRNA-1
tig0027944 CDS 1 122 1 ID=Msa1436520-mRNA-1:cds;Parent=Msa1436520-mRNA-1
tig0027944 CDS 278 323 278 ID=Msa1436520-mRNA-1:cds;Parent=Msa1436520-mRNA-1
tig0027944 CDS 409 498 409 ID=Msa1436520-mRNA-1:cds;Parent=Msa1436520-mRNA-1
tig0027944 CDS 3889 3954 3889 ID=Msa1436520-mRNA-1:cds;Parent=Msa1436520-mRNA-1
tig0027944 CDS 4036 4101 4036 ID=Msa1436520-mRNA-1:cds;Parent=Msa1436520-mRNA-1
tig0027944 CDS 4479 4937 4479 ID=Msa1436520-mRNA-1:cds;Parent=Msa1436520-mRNA-1
tig0027944 three_prime_UTR 4938 5362 4938 ID=Msa1436520-mRNA-1:three_prime_utr;Parent=Msa1436520-mRNA-1
Gene Sequence

>Msa1436520

CATGAAGACGGTGTACTCAAGGGACACGGAACCGCTGACCTCGAGGGCGAAGTTGTTGCCACTCTCTGTGGCGTCGTCGAGCGTGTTAACAAGCTCGTTTATGTCCGCGCTTTACGCTCAAGGTACAAACCTGAGGTTGGTGACATTGTTATTGGGCGTGTCATTGAGGTTGCTCAGAAGCGTTGGAGATTGGATATTAATTACAGTCAAAACGCTTATTTGATGCTTTCTGCTATGAACATGCCTGATGGTGTACAGAGGCGAAGGACAGCTTTAGATGAGCTAAATATGCGCTGTATTTTTGAGGAGGCAGATGTCATTTGTGCTGAAGTTCGTGGTTTTCAGCATGATGGCTTACACCTTCAAGCAAGAAGTCAAAAATATGGAAAGCTTAGTACTGGTCAACTGCTTACAGTCACACCATATTTAGTGAAGAGGCAGAAACAACATTTCCACCATATAGAGCAGTACGGTATTGATTTAATAATTGGCTGTAATGGGTTCATATGGGTTGGGGAACATGTTGAAGTCAGAGATGACATGGTAGAAGATCAAGTGAACCAATCTGATCCACAGGTTTTAACTCCCAATAAAAATTCTGTGAGTCTTGAAGAACAAGAGAAAAAGTACACGGCACTGGAGACAAGAAAGTACATATGCAGGGCTGCTAATGCTGTTAGAGTATTATCTACTTTAGGATTCATTATAACATCGGAAATCATCAAGGGAGTTATTGATCTCAGCCTTTCTGCGAATCTTGATATACACGACATGCTTGGTTCCGAGTTCTGTGTTCTGGTTACCGAAAAAGAGGCTGAAAGGAGAAGCTCAAATAAAAAGAAGCGGTAG

Protein sequence

>Msa1436520

HEDGVLKGHGTADLEGEVVATLCGVVERVNKLVYVRALRSRYKPEVGDIVIGRVIEVAQKRWRLDINYSQNAYLMLSAMNMPDGVQRRRTALDELNMRCIFEEADVICAEVRGFQHDGLHLQARSQKYGKLSTGQLLTVTPYLVKRQKQHFHHIEQYGIDLIIGCNGFIWVGEHVEVRDDMVEDQVNQSDPQVLTPNKNSVSLEEQEKKYTALETRKYICRAANAVRVLSTLGFIITSEIIKGVIDLSLSANLDIHDMLGSEFCVLVTEKEAERRSSNKKKR*