Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1421060 | sp|O81223|CNBL4_ARATH | 60.092 | 218 | 81 | 1 | 19 | 236 | 3 | 214 | 1.47e-89 | 266 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1421060 | A0A396GEZ0 | 94.561 | 239 | 10 | 2 | 1 | 239 | 1 | 236 | 2.31e-158 | 447 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001830 | Msa1421060 | 0.838919 | 2.160571e-57 | -8.615850e-47 |
| Msa0010490 | Msa1421060 | 0.851742 | 7.281192e-61 | -8.615850e-47 |
| Msa0010500 | Msa1421060 | 0.849611 | 2.892944e-60 | -8.615850e-47 |
| Msa0037540 | Msa1421060 | -0.801922 | 7.162027e-49 | -8.615850e-47 |
| Msa0037590 | Msa1421060 | -0.806037 | 9.992379e-50 | -8.615850e-47 |
| Msa0059950 | Msa1421060 | 0.808313 | 3.292658e-50 | -8.615850e-47 |
| Msa1386050 | Msa1421060 | 0.810452 | 1.144489e-50 | -8.615850e-47 |
| Msa0631320 | Msa1421060 | 0.818265 | 2.145443e-52 | -8.615850e-47 |
| Msa0741440 | Msa1421060 | 0.800824 | 1.202205e-48 | -8.615850e-47 |
| Msa1231840 | Msa1421060 | 0.802934 | 4.432399e-49 | -8.615850e-47 |
| Msa1236690 | Msa1421060 | 0.827107 | 1.877925e-54 | -8.615850e-47 |
| Msa0380100 | Msa1421060 | 0.813261 | 2.799125e-51 | -8.615850e-47 |
| Msa0389210 | Msa1421060 | 0.802995 | 4.305397e-49 | -8.615850e-47 |
| Msa0981840 | Msa1421060 | 0.822446 | 2.358126e-53 | -8.615850e-47 |
| Msa1059470 | Msa1421060 | 0.834201 | 3.436016e-56 | -8.615850e-47 |
| Msa1096070 | Msa1421060 | 0.803165 | 3.970510e-49 | -8.615850e-47 |
| Msa0272450 | Msa1421060 | 0.801097 | 1.057453e-48 | -8.615850e-47 |
| Msa0358860 | Msa1421060 | 0.804555 | 2.042177e-49 | -8.615850e-47 |
| Msa1176720 | Msa1421060 | 0.903193 | 4.465759e-79 | -8.615850e-47 |
| Msa0534870 | Msa1421060 | 0.827017 | 1.973703e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1421060 | MtrunA17_Chr8g0346911 | 94.561 | 239 | 10 | 2 | 1 | 239 | 1 | 236 | 4.45e-162 | 447 |
| Msa1421060 | MtrunA17_Chr8g0388331 | 62.051 | 195 | 74 | 0 | 42 | 236 | 16 | 210 | 2.08e-84 | 250 |
| Msa1421060 | MtrunA17_Chr4g0055421 | 56.923 | 195 | 84 | 0 | 42 | 236 | 16 | 210 | 3.63e-77 | 232 |
| Msa1421060 | MtrunA17_Chr1g0151621 | 57.216 | 194 | 83 | 0 | 41 | 234 | 54 | 247 | 1.11e-75 | 229 |
| Msa1421060 | MtrunA17_Chr3g0102821 | 55.102 | 196 | 88 | 0 | 42 | 237 | 31 | 226 | 5.30e-75 | 226 |
| Msa1421060 | MtrunA17_Chr4g0076551 | 55.208 | 192 | 86 | 0 | 46 | 237 | 36 | 227 | 8.47e-75 | 226 |
| Msa1421060 | MtrunA17_Chr5g0446931 | 55.102 | 196 | 88 | 0 | 42 | 237 | 31 | 226 | 1.76e-74 | 225 |
| Msa1421060 | MtrunA17_Chr2g0290771 | 54.348 | 184 | 84 | 0 | 54 | 237 | 8 | 191 | 1.20e-70 | 214 |
| Msa1421060 | MtrunA17_Chr8g0341941 | 52.083 | 192 | 92 | 0 | 47 | 238 | 66 | 257 | 1.28e-63 | 199 |
| Msa1421060 | MtrunA17_Chr2g0290781 | 49.741 | 193 | 97 | 0 | 47 | 239 | 41 | 233 | 3.28e-63 | 197 |
| Msa1421060 | MtrunA17_Chr2g0290751 | 55.357 | 168 | 75 | 0 | 51 | 218 | 43 | 210 | 2.30e-61 | 191 |
| Msa1421060 | MtrunA17_Chr2g0290761 | 54.762 | 168 | 76 | 0 | 51 | 218 | 43 | 210 | 9.69e-60 | 187 |
| Msa1421060 | MtrunA17_Chr3g0126801 | 72.000 | 100 | 28 | 0 | 138 | 237 | 6 | 105 | 8.58e-47 | 151 |
| Msa1421060 | MtrunA17_Chr4g0063121 | 41.111 | 180 | 86 | 1 | 57 | 236 | 8 | 167 | 2.20e-43 | 145 |
| Msa1421060 | MtrunA17_Chr3g0126811 | 65.000 | 100 | 35 | 0 | 42 | 141 | 17 | 116 | 8.78e-39 | 130 |
| Msa1421060 | MtrunA17_Chr5g0399921 | 53.191 | 94 | 44 | 0 | 42 | 135 | 15 | 108 | 2.27e-27 | 101 |
| Msa1421060 | MtrunA17_Chr8g0388321 | 41.463 | 123 | 47 | 2 | 42 | 155 | 58 | 164 | 1.61e-24 | 95.9 |
| Msa1421060 | MtrunA17_Chr8g0388311 | 52.439 | 82 | 39 | 0 | 158 | 239 | 1 | 82 | 1.81e-24 | 93.2 |
| Msa1421060 | MtrunA17_Chr5g0399931 | 55.738 | 61 | 27 | 0 | 158 | 218 | 1 | 61 | 5.33e-16 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1421060 | AT5G24270.4 | 60.092 | 218 | 81 | 1 | 19 | 236 | 3 | 214 | 1.49e-90 | 266 |
| Msa1421060 | AT5G24270.1 | 60.092 | 218 | 81 | 1 | 19 | 236 | 3 | 214 | 1.49e-90 | 266 |
| Msa1421060 | AT5G24270.2 | 60.092 | 218 | 81 | 1 | 19 | 236 | 3 | 214 | 1.49e-90 | 266 |
| Msa1421060 | AT5G24270.5 | 63.441 | 186 | 68 | 0 | 51 | 236 | 4 | 189 | 1.33e-83 | 248 |
| Msa1421060 | AT1G64480.2 | 60.000 | 195 | 78 | 0 | 42 | 236 | 20 | 214 | 3.17e-79 | 237 |
| Msa1421060 | AT1G64480.3 | 60.000 | 195 | 78 | 0 | 42 | 236 | 20 | 214 | 3.17e-79 | 237 |
| Msa1421060 | AT1G64480.1 | 60.000 | 195 | 78 | 0 | 42 | 236 | 20 | 214 | 3.17e-79 | 237 |
| Msa1421060 | AT4G33000.2 | 57.732 | 194 | 82 | 0 | 43 | 236 | 53 | 246 | 4.43e-75 | 228 |
| Msa1421060 | AT4G33000.1 | 57.732 | 194 | 82 | 0 | 43 | 236 | 63 | 256 | 1.03e-74 | 227 |
| Msa1421060 | AT5G47100.1 | 56.316 | 190 | 83 | 0 | 47 | 236 | 21 | 210 | 8.00e-74 | 223 |
| Msa1421060 | AT4G17615.4 | 54.872 | 195 | 88 | 0 | 42 | 236 | 16 | 210 | 1.68e-73 | 223 |
| Msa1421060 | AT4G17615.1 | 54.872 | 195 | 88 | 0 | 42 | 236 | 16 | 210 | 1.68e-73 | 223 |
| Msa1421060 | AT4G17615.5 | 54.872 | 195 | 88 | 0 | 42 | 236 | 16 | 210 | 1.68e-73 | 223 |
| Msa1421060 | AT4G26570.1 | 53.846 | 195 | 90 | 0 | 43 | 237 | 32 | 226 | 2.48e-73 | 223 |
| Msa1421060 | AT5G24270.3 | 62.733 | 161 | 60 | 0 | 76 | 236 | 7 | 167 | 6.78e-73 | 220 |
| Msa1421060 | AT5G55990.1 | 53.846 | 195 | 90 | 0 | 43 | 237 | 32 | 226 | 4.45e-72 | 219 |
| Msa1421060 | AT5G55990.2 | 53.846 | 195 | 90 | 0 | 43 | 237 | 32 | 226 | 4.45e-72 | 219 |
| Msa1421060 | AT4G26570.2 | 52.764 | 199 | 90 | 1 | 43 | 237 | 32 | 230 | 4.23e-71 | 217 |
| Msa1421060 | AT1G64480.4 | 60.452 | 177 | 70 | 0 | 42 | 218 | 20 | 196 | 7.82e-71 | 215 |
| Msa1421060 | AT4G17615.3 | 55.249 | 181 | 81 | 0 | 42 | 222 | 16 | 196 | 6.03e-66 | 205 |
| Msa1421060 | AT4G01420.1 | 49.246 | 199 | 101 | 0 | 31 | 229 | 4 | 202 | 4.88e-64 | 198 |
| Msa1421060 | AT4G16350.2 | 47.642 | 212 | 98 | 2 | 28 | 239 | 24 | 222 | 4.07e-62 | 194 |
| Msa1421060 | AT4G16350.1 | 47.642 | 212 | 98 | 2 | 28 | 239 | 24 | 222 | 4.07e-62 | 194 |
| Msa1421060 | AT4G01420.2 | 49.468 | 188 | 95 | 0 | 31 | 218 | 4 | 191 | 3.52e-60 | 188 |
| Msa1421060 | AT4G17615.2 | 54.140 | 157 | 72 | 0 | 80 | 236 | 12 | 168 | 1.17e-59 | 186 |
| Msa1421060 | AT4G26560.1 | 45.789 | 190 | 90 | 1 | 61 | 237 | 25 | 214 | 2.24e-55 | 177 |
| Msa1421060 | AT5G47100.2 | 52.899 | 138 | 65 | 0 | 47 | 184 | 21 | 158 | 5.24e-48 | 156 |
| Msa1421060 | AT4G33000.5 | 54.861 | 144 | 65 | 0 | 43 | 186 | 53 | 196 | 1.05e-47 | 157 |
| Msa1421060 | AT4G33000.4 | 55.714 | 140 | 62 | 0 | 43 | 182 | 53 | 192 | 1.70e-47 | 155 |
| Msa1421060 | AT4G33000.6 | 55.714 | 140 | 62 | 0 | 43 | 182 | 53 | 192 | 1.70e-47 | 155 |
| Msa1421060 | AT4G33000.3 | 55.435 | 92 | 41 | 0 | 43 | 134 | 53 | 144 | 1.79e-25 | 98.2 |
Find 54 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTCTGCTTGAGGAGCTTT+AGG | 0.234896 | tig0024906:+73643 | None:intergenic |
| GTTAGAAATGTATTTCTTAC+TGG | 0.252316 | tig0024906:-72740 | Msa1421060:three_prime_UTR |
| CGCCTTAATGGTCAGAATTC+AGG | 0.255806 | tig0024906:+72541 | None:intergenic |
| CATTATATTAGACGCCTTAA+TGG | 0.270604 | tig0024906:+72529 | None:intergenic |
| TTCTGCGTTCAGCATAAAAC+TGG | 0.307181 | tig0024906:+72927 | None:intergenic |
| GGAGATGGTGTTGATGGTTT+TGG | 0.329380 | tig0024906:-73319 | Msa1421060:CDS |
| TAAATTCGCCAAACTCTATA+TGG | 0.330475 | tig0024906:+73689 | None:intergenic |
| AACAACGGCCATATAGAGTT+TGG | 0.408503 | tig0024906:-73697 | Msa1421060:CDS |
| GGCGAATTTATCAGATCCTT+GGG | 0.409624 | tig0024906:-73676 | Msa1421060:CDS |
| TTATATGACTTGAGGCATAC+TGG | 0.414238 | tig0024906:-73455 | Msa1421060:CDS |
| TGGCGAATTTATCAGATCCT+TGG | 0.418944 | tig0024906:-73677 | Msa1421060:CDS |
| GTTGAAGGAGATGGTGTTGA+TGG | 0.420723 | tig0024906:-73325 | Msa1421060:CDS |
| GTCATGTTCTTGAGTAATGA+TGG | 0.435791 | tig0024906:+73072 | None:intergenic |
| AGGGATTTATAATAAATTTG+AGG | 0.437402 | tig0024906:+72603 | None:intergenic |
| AAACTACGAGTGTGATTCTT+CGG | 0.440928 | tig0024906:+72903 | None:intergenic |
| AAACTCGAATCAAAGCTATA+TGG | 0.443483 | tig0024906:+72803 | None:intergenic |
| CTTATCTTTGCCAACTTCAC+AGG | 0.446985 | tig0024906:+74997 | None:intergenic |
| TAATAAGTGTTGTGAGTCAA+TGG | 0.449933 | tig0024906:+75345 | None:intergenic |
| AGTTAGTCATTTCGAGCTGT+TGG | 0.455730 | tig0024906:-72833 | Msa1421060:three_prime_UTR |
| GACCTGAATTCTGACCATTA+AGG | 0.458985 | tig0024906:-72543 | Msa1421060:three_prime_UTR |
| TTTAAAACTTACATTAGATA+AGG | 0.469690 | tig0024906:+73045 | None:intergenic |
| ATCAGCAGATGAAGAATTTG+TGG | 0.485207 | tig0024906:-72490 | Msa1421060:three_prime_UTR |
| GAGAGAGGTGGAAATCTTGA+AGG | 0.495718 | tig0024906:-74333 | Msa1421060:CDS |
| ATTCTTCATCTGCTGATACA+TGG | 0.501689 | tig0024906:+72496 | None:intergenic |
| GCGAAACCTCTTTGTGGATA+GGG | 0.504445 | tig0024906:-74081 | Msa1421060:intron |
| AAAAGTAGCAGAAAATATCA+TGG | 0.516359 | tig0024906:-75026 | Msa1421060:CDS |
| TTTGGTTCTCTCTGATGATG+TGG | 0.519964 | tig0024906:-73286 | Msa1421060:CDS |
| AAACAAGCGAAACCTCTTTG+TGG | 0.525654 | tig0024906:-74087 | Msa1421060:CDS |
| TTTCTAGAAACAGACACAAA+AGG | 0.529093 | tig0024906:-73144 | Msa1421060:CDS |
| GAAGAATGGAGTGAATATGT+TGG | 0.530325 | tig0024906:-73102 | Msa1421060:CDS |
| GTAGCAGAAAATATCATGGA+TGG | 0.537395 | tig0024906:-75022 | Msa1421060:CDS |
| AGCGAAACCTCTTTGTGGAT+AGG | 0.555448 | tig0024906:-74082 | Msa1421060:CDS |
| AACATGATCTTTCTGTGATG+CGG | 0.557680 | tig0024906:-72576 | Msa1421060:three_prime_UTR |
| CATTTAGATTATATGACTTG+AGG | 0.558619 | tig0024906:-73463 | Msa1421060:CDS |
| ATGGATGGATCCTGTGAAGT+TGG | 0.567272 | tig0024906:-75007 | Msa1421060:CDS |
| TCAGCAGATGAAGAATTTGT+GGG | 0.568897 | tig0024906:-72489 | Msa1421060:three_prime_UTR |
| AAATTTACAGTTGAAGGAGA+TGG | 0.569253 | tig0024906:-73334 | Msa1421060:intron |
| TATGAAACTCATTGCGTAAG+CGG | 0.584197 | tig0024906:+72666 | None:intergenic |
| CCTAGCAGTTACTGTGAGAG+AGG | 0.600150 | tig0024906:-74348 | Msa1421060:intron |
| TGACTAACTACGTGAATGTG+TGG | 0.605889 | tig0024906:+72847 | None:intergenic |
| TACATGGTGTCTCAGAAGCA+AGG | 0.611094 | tig0024906:+74912 | None:intergenic |
| TTGGAGCTAGAAGATAAAGA+TGG | 0.613339 | tig0024906:+72712 | None:intergenic |
| GGTTGAAACAATTGTGGACA+AGG | 0.615162 | tig0024906:-73265 | Msa1421060:intron |
| TGCATACCCTATCCACAAAG+AGG | 0.615893 | tig0024906:+74075 | None:intergenic |
| ACAGAAAGATCATGTTAACA+AGG | 0.617259 | tig0024906:+72583 | None:intergenic |
| TGAATGTGTGGAAAGCGTAA+TGG | 0.635928 | tig0024906:+72859 | None:intergenic |
| TGATGTGGTTGAAACAATTG+TGG | 0.635953 | tig0024906:-73271 | Msa1421060:CDS |
| GAAACAGACACAAAAGGTGA+CGG | 0.637440 | tig0024906:-73138 | Msa1421060:CDS |
| TCTGCGTTCAGCATAAAACT+GGG | 0.644374 | tig0024906:+72928 | None:intergenic |
| CTCTTCGATGTCAATAACAA+CGG | 0.649512 | tig0024906:-73712 | Msa1421060:CDS |
| AGCAGTTACTGTGAGAGAGG+TGG | 0.654761 | tig0024906:-74345 | Msa1421060:intron |
| CAGAAAGATCATGTTAACAA+GGG | 0.656092 | tig0024906:+72584 | None:intergenic |
| TGGTTACATTGAGCGCGAAG+AGG | 0.670430 | tig0024906:-73435 | Msa1421060:intron |
| TTTAGGATGAAAGATGCCCA+AGG | 0.697078 | tig0024906:+73660 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAACATGAAA+AGG | + | tig0024906:73089-73108 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAACATGAAA+AGG | - | tig0024906:73089-73108 | Msa1421060:CDS | 10.0% |
| !!! | ATCACTTTATAAATTTTATA+AGG | - | tig0024906:74679-74698 | Msa1421060:intron | 10.0% |
| !!! | TCATTTATCATTTTTTTACA+AGG | - | tig0024906:72628-72647 | Msa1421060:three_prime_UTR | 15.0% |
| !!! | CATTTATCATTTTTTTACAA+GGG | - | tig0024906:72629-72648 | Msa1421060:three_prime_UTR | 15.0% |
| !! | ATATATTAAGTGTAAAAAAG+AGG | + | tig0024906:73189-73208 | None:intergenic | 15.0% |
| !! | AATTAGTTATTGCTTAAAAA+AGG | - | tig0024906:73210-73229 | Msa1421060:intron | 15.0% |
| !! | ATTAGTTATTGCTTAAAAAA+GGG | - | tig0024906:73211-73230 | Msa1421060:intron | 15.0% |
| !!! | AAAGTTTCTTATATATGTTT+TGG | - | tig0024906:74702-74721 | Msa1421060:intron | 15.0% |
| !!! | AAGTTTCTTATATATGTTTT+GGG | - | tig0024906:74703-74722 | Msa1421060:intron | 15.0% |
| !!! | TTTAAAACTTACATTAGATA+AGG | + | tig0024906:74848-74867 | None:intergenic | 15.0% |
| !!! | AATTTTTGATTCTAATTTCA+GGG | - | tig0024906:74922-74941 | Msa1421060:CDS | 15.0% |
| !!! | TCTATCAATAAGTTTTGAAT+AGG | - | tig0024906:72793-72812 | Msa1421060:three_prime_UTR | 20.0% |
| !!! | TTTTTTTTTTTTTGTTGCCT+TGG | - | tig0024906:73026-73045 | Msa1421060:intron | 20.0% |
| !! | ATAAACAAGTTAAATTTCCA+AGG | + | tig0024906:73046-73065 | None:intergenic | 20.0% |
| !! | TTAGTTATTGCTTAAAAAAG+GGG | - | tig0024906:73212-73231 | Msa1421060:intron | 20.0% |
| !! | TTATGCATATATAAGTCATT+TGG | - | tig0024906:74347-74366 | Msa1421060:intron | 20.0% |
| !! | TATGCATATATAAGTCATTT+GGG | - | tig0024906:74348-74367 | Msa1421060:intron | 20.0% |
| !!! | TGACAATTGTTTAAATGTTT+TGG | - | tig0024906:74524-74543 | Msa1421060:intron | 20.0% |
| !!! | AGTTTCTTATATATGTTTTG+GGG | - | tig0024906:74704-74723 | Msa1421060:intron | 20.0% |
| !!! | CAATTTTTGATTCTAATTTC+AGG | - | tig0024906:74921-74940 | Msa1421060:CDS | 20.0% |
| !!! | CATAACTAAGATTTTAAACT+CGG | + | tig0024906:75131-75150 | None:intergenic | 20.0% |
| !! | AGGGATTTATAATAAATTTG+AGG | + | tig0024906:75290-75309 | None:intergenic | 20.0% |
| ! | TATACTTGCAAAAATCAACT+TGG | + | tig0024906:72588-72607 | None:intergenic | 25.0% |
| !!! | TTTTTTTACAAGGGTAAACT+CGG | - | tig0024906:72638-72657 | Msa1421060:three_prime_UTR | 25.0% |
| ! | AAATATCATTCACATAAGCA+TGG | - | tig0024906:72694-72713 | Msa1421060:three_prime_UTR | 25.0% |
| !!! | GAATAGGAATAAGTGTTTTT+TGG | - | tig0024906:72809-72828 | Msa1421060:three_prime_UTR | 25.0% |
| ! | AAAAGTAGCAGAAAATATCA+TGG | - | tig0024906:72864-72883 | Msa1421060:three_prime_UTR | 25.0% |
| !! | TCATTTTCTTTTACTTGTGA+AGG | + | tig0024906:72925-72944 | None:intergenic | 25.0% |
| ! | GTGTGATTTAGATAATTTCA+TGG | - | tig0024906:73138-73157 | Msa1421060:CDS | 25.0% |
| !! | GATAATTTCATGGATTACTT+TGG | - | tig0024906:73148-73167 | Msa1421060:CDS | 25.0% |
| ! | AAATAGTTTCACAAGTGTTT+AGG | + | tig0024906:73292-73311 | None:intergenic | 25.0% |
| ! | TAAACACTTGTGAAACTATT+TGG | - | tig0024906:73291-73310 | Msa1421060:CDS | 25.0% |
| ! | AAACACTTGTGAAACTATTT+GGG | - | tig0024906:73292-73311 | Msa1421060:CDS | 25.0% |
| ! | TATTCATATACAATTGGTGA+TGG | + | tig0024906:73491-73510 | None:intergenic | 25.0% |
| !! | GAAAAATGGACTTATTCAAA+AGG | - | tig0024906:73611-73630 | Msa1421060:intron | 25.0% |
| ! | TGTGTATTGTGTATATTAAC+AGG | - | tig0024906:73749-73768 | Msa1421060:intron | 25.0% |
| ! | GAAATAAGCATGTAAGTATT+TGG | - | tig0024906:73974-73993 | Msa1421060:intron | 25.0% |
| ! | GAGATCAAACAATTGAATTT+GGG | + | tig0024906:74137-74156 | None:intergenic | 25.0% |
| ! | CATTTAGATTATATGACTTG+AGG | - | tig0024906:74427-74446 | Msa1421060:intron | 25.0% |
| ! | ACATGAAAATTTACAGTTGA+AGG | - | tig0024906:74550-74569 | Msa1421060:intron | 25.0% |
| !!! | GTTTCTTATATATGTTTTGG+GGG | - | tig0024906:74705-74724 | Msa1421060:intron | 25.0% |
| !!! | TTTCTTATATATGTTTTGGG+GGG | - | tig0024906:74706-74725 | Msa1421060:intron | 25.0% |
| ! | GTTAGAAATGTATTTCTTAC+TGG | - | tig0024906:75150-75169 | Msa1421060:intron | 25.0% |
| !! | ATTTTGCGCATTTCATAATT+TGG | + | tig0024906:75200-75219 | None:intergenic | 25.0% |
| ! | TAATAAGTGTTGTGAGTCAA+TGG | + | tig0024906:72548-72567 | None:intergenic | 30.0% |
| !!! | TGTTTTTTGGTTGTCAAGAA+TGG | - | tig0024906:72822-72841 | Msa1421060:three_prime_UTR | 30.0% |
| !!! | GTTTTTTGGTTGTCAAGAAT+GGG | - | tig0024906:72823-72842 | Msa1421060:three_prime_UTR | 30.0% |
| !! | GGAAGCTTTAGATAATTTCA+TGG | - | tig0024906:73110-73129 | Msa1421060:CDS | 30.0% |
| ATCCAAACAGAACCTTAAAT+TGG | - | tig0024906:73413-73432 | Msa1421060:intron | 30.0% | |
| ! | AACCAATTTAAGGTTCTGTT+TGG | + | tig0024906:73418-73437 | None:intergenic | 30.0% |
| TGTTTGCATAAACGAAAACA+CGG | + | tig0024906:73450-73469 | None:intergenic | 30.0% | |
| AGCAGAGTTATTGTGAAAAA+TGG | - | tig0024906:73597-73616 | Msa1421060:intron | 30.0% | |
| !! | CACTTTGCTCTTTTTAGAAA+CGG | - | tig0024906:73780-73799 | Msa1421060:intron | 30.0% |
| TTGTTAGGAAGAGCTTATTT+GGG | - | tig0024906:73941-73960 | Msa1421060:intron | 30.0% | |
| ATCGGATGTGAATAAAAAAG+AGG | + | tig0024906:74109-74128 | None:intergenic | 30.0% | |
| ! | AATTGAATTTGGGATGGAAT+CGG | + | tig0024906:74127-74146 | None:intergenic | 30.0% |
| TCAAACAATTGAATTTGGGA+TGG | + | tig0024906:74133-74152 | None:intergenic | 30.0% | |
| GGAGATCAAACAATTGAATT+TGG | + | tig0024906:74138-74157 | None:intergenic | 30.0% | |
| TAAATTCGCCAAACTCTATA+TGG | + | tig0024906:74204-74223 | None:intergenic | 30.0% | |
| !! | CATATTATTTTGTCTGCTTG+AGG | + | tig0024906:74259-74278 | None:intergenic | 30.0% |
| AAATTTACAGTTGAAGGAGA+TGG | - | tig0024906:74556-74575 | Msa1421060:intron | 30.0% | |
| ! | TTTCTAGAAACAGACACAAA+AGG | - | tig0024906:74746-74765 | Msa1421060:intron | 30.0% |
| ! | GAAAAATTGACTTCGAAGAA+TGG | - | tig0024906:74774-74793 | Msa1421060:intron | 30.0% |
| AAACTCGAATCAAAGCTATA+TGG | + | tig0024906:75090-75109 | None:intergenic | 30.0% | |
| CAGAAAGATCATGTTAACAA+GGG | + | tig0024906:75309-75328 | None:intergenic | 30.0% | |
| ACAGAAAGATCATGTTAACA+AGG | + | tig0024906:75310-75329 | None:intergenic | 30.0% | |
| CATTATATTAGACGCCTTAA+TGG | + | tig0024906:75364-75383 | None:intergenic | 30.0% | |
| AGCTAAAATTTCTGCTGTGA+TGG | - | tig0024906:72731-72750 | Msa1421060:three_prime_UTR | 35.0% | |
| TAAAATTTCTGCTGTGATGG+TGG | - | tig0024906:72734-72753 | Msa1421060:three_prime_UTR | 35.0% | |
| GTAGCAGAAAATATCATGGA+TGG | - | tig0024906:72868-72887 | Msa1421060:three_prime_UTR | 35.0% | |
| GGAAGCTTTCTTTACTTACA+TGG | + | tig0024906:72997-73016 | None:intergenic | 35.0% | |
| !!! | CATGGATTACTTTGGTTTTG+TGG | - | tig0024906:73156-73175 | Msa1421060:intron | 35.0% |
| ! | ATACCATCTTAAGGGCTTTT+TGG | - | tig0024906:73239-73258 | Msa1421060:intron | 35.0% |
| AATCCAAAAAGCCCTTAAGA+TGG | + | tig0024906:73245-73264 | None:intergenic | 35.0% | |
| TTAGAGCTAACAATCAGTTC+TGG | - | tig0024906:73367-73386 | Msa1421060:intron | 35.0% | |
| GGTGGAAATGAACCAATTTA+AGG | + | tig0024906:73428-73447 | None:intergenic | 35.0% | |
| GTTTGCATAAACGAAAACAC+GGG | + | tig0024906:73449-73468 | None:intergenic | 35.0% | |
| !! | CATATACAATTGGTGATGGA+TGG | + | tig0024906:73487-73506 | None:intergenic | 35.0% |
| GGACGCTATTCATATACAAT+TGG | + | tig0024906:73497-73516 | None:intergenic | 35.0% | |
| AGAGAAGAGTTTCAGAACAA+TGG | + | tig0024906:73518-73537 | None:intergenic | 35.0% | |
| ACTTGAATCTCTTGTTCGAT+TGG | - | tig0024906:73664-73683 | Msa1421060:CDS | 35.0% | |
| !!! | GGCATTTGGCATAAGTTTTT+TGG | + | tig0024906:73912-73931 | None:intergenic | 35.0% |
| AACAACTTCTGAATGGCATT+TGG | + | tig0024906:73926-73945 | None:intergenic | 35.0% | |
| AATGCCATTCAGAAGTTGTT+AGG | - | tig0024906:73926-73945 | Msa1421060:intron | 35.0% | |
| TCTTCCTAACAACTTCTGAA+TGG | + | tig0024906:73933-73952 | None:intergenic | 35.0% | |
| GTTGTTAGGAAGAGCTTATT+TGG | - | tig0024906:73940-73959 | Msa1421060:intron | 35.0% | |
| AAGAGGATGAAGAGAATGAA+CGG | + | tig0024906:74092-74111 | None:intergenic | 35.0% | |
| CTCTTCGATGTCAATAACAA+CGG | - | tig0024906:74178-74197 | Msa1421060:intron | 35.0% | |
| TCACCACGTAAAATTCTTCT+TGG | - | tig0024906:74398-74417 | Msa1421060:intron | 35.0% | |
| TTATATGACTTGAGGCATAC+TGG | - | tig0024906:74435-74454 | Msa1421060:intron | 35.0% | |
| TATATTGTACGAAAGACCAC+AGG | + | tig0024906:74489-74508 | None:intergenic | 35.0% | |
| !!! | GGTTTTGGTTGAATCTGATT+TGG | - | tig0024906:74586-74605 | Msa1421060:intron | 35.0% |
| TGATGTGGTTGAAACAATTG+TGG | - | tig0024906:74619-74638 | Msa1421060:intron | 35.0% | |
| GAAGAATGGAGTGAATATGT+TGG | - | tig0024906:74788-74807 | Msa1421060:intron | 35.0% | |
| GTCATGTTCTTGAGTAATGA+TGG | + | tig0024906:74821-74840 | None:intergenic | 35.0% | |
| CTGTGTCATAATGCAATGAA+TGG | + | tig0024906:74889-74908 | None:intergenic | 35.0% | |
| AAACTACGAGTGTGATTCTT+CGG | + | tig0024906:74990-75009 | None:intergenic | 35.0% | |
| TTGGAGCTAGAAGATAAAGA+TGG | + | tig0024906:75181-75200 | None:intergenic | 35.0% | |
| TATGAAACTCATTGCGTAAG+CGG | + | tig0024906:75227-75246 | None:intergenic | 35.0% | |
| AACATGATCTTTCTGTGATG+CGG | - | tig0024906:75314-75333 | Msa1421060:five_prime_UTR | 35.0% | |
| ATTCTTCATCTGCTGATACA+TGG | + | tig0024906:75397-75416 | None:intergenic | 35.0% | |
| ATCAGCAGATGAAGAATTTG+TGG | - | tig0024906:75400-75419 | Msa1421060:five_prime_UTR | 35.0% | |
| TCAGCAGATGAAGAATTTGT+GGG | - | tig0024906:75401-75420 | Msa1421060:five_prime_UTR | 35.0% | |
| !! | TTTTGGTTGTCAAGAATGGG+TGG | - | tig0024906:72826-72845 | Msa1421060:three_prime_UTR | 40.0% |
| CTTATCTTTGCCAACTTCAC+AGG | + | tig0024906:72896-72915 | None:intergenic | 40.0% | |
| AAACAAGCGAAACCTCTTTG+TGG | - | tig0024906:73803-73822 | Msa1421060:intron | 40.0% | |
| AGAGGATGAAGAGAATGAAC+GGG | + | tig0024906:74091-74110 | None:intergenic | 40.0% | |
| GATCAAACATCTGCATGGAA+AGG | + | tig0024906:74159-74178 | None:intergenic | 40.0% | |
| GAAGAGATCAAACATCTGCA+TGG | + | tig0024906:74164-74183 | None:intergenic | 40.0% | |
| AACAACGGCCATATAGAGTT+TGG | - | tig0024906:74193-74212 | Msa1421060:intron | 40.0% | |
| TGGCGAATTTATCAGATCCT+TGG | - | tig0024906:74213-74232 | Msa1421060:intron | 40.0% | |
| GGCGAATTTATCAGATCCTT+GGG | - | tig0024906:74214-74233 | Msa1421060:intron | 40.0% | |
| ! | TTTAGGATGAAAGATGCCCA+AGG | + | tig0024906:74233-74252 | None:intergenic | 40.0% |
| AGCTGTTTGTTTACCATTCC+AGG | - | tig0024906:74312-74331 | Msa1421060:CDS | 40.0% | |
| AGATGATCAACATCCTGGAA+TGG | + | tig0024906:74328-74347 | None:intergenic | 40.0% | |
| GCATAAGATGATCAACATCC+TGG | + | tig0024906:74333-74352 | None:intergenic | 40.0% | |
| ! | CTGCCAAGAAGAATTTTACG+TGG | + | tig0024906:74404-74423 | None:intergenic | 40.0% |
| !! | TTTGGTTCTCTCTGATGATG+TGG | - | tig0024906:74604-74623 | Msa1421060:intron | 40.0% |
| GGTTGAAACAATTGTGGACA+AGG | - | tig0024906:74625-74644 | Msa1421060:intron | 40.0% | |
| GAAACAGACACAAAAGGTGA+CGG | - | tig0024906:74752-74771 | Msa1421060:intron | 40.0% | |
| TCTGCGTTCAGCATAAAACT+GGG | + | tig0024906:74965-74984 | None:intergenic | 40.0% | |
| TTCTGCGTTCAGCATAAAAC+TGG | + | tig0024906:74966-74985 | None:intergenic | 40.0% | |
| ! | TGAATGTGTGGAAAGCGTAA+TGG | + | tig0024906:75034-75053 | None:intergenic | 40.0% |
| TGACTAACTACGTGAATGTG+TGG | + | tig0024906:75046-75065 | None:intergenic | 40.0% | |
| AGTTAGTCATTTCGAGCTGT+TGG | - | tig0024906:75057-75076 | Msa1421060:exon | 40.0% | |
| GACCTGAATTCTGACCATTA+AGG | - | tig0024906:75347-75366 | Msa1421060:five_prime_UTR | 40.0% | |
| ATGGATGGATCCTGTGAAGT+TGG | - | tig0024906:72883-72902 | Msa1421060:three_prime_UTR | 45.0% | |
| TACATGGTGTCTCAGAAGCA+AGG | + | tig0024906:72981-73000 | None:intergenic | 45.0% | |
| AGGGGTTGCATACCATCTTA+AGG | - | tig0024906:73230-73249 | Msa1421060:intron | 45.0% | |
| GGGGTTGCATACCATCTTAA+GGG | - | tig0024906:73231-73250 | Msa1421060:intron | 45.0% | |
| TGCATAAACGAAAACACGGG+TGG | + | tig0024906:73446-73465 | None:intergenic | 45.0% | |
| GAGAGAGGTGGAAATCTTGA+AGG | - | tig0024906:73557-73576 | Msa1421060:intron | 45.0% | |
| AGCGAAACCTCTTTGTGGAT+AGG | - | tig0024906:73808-73827 | Msa1421060:intron | 45.0% | |
| GCGAAACCTCTTTGTGGATA+GGG | - | tig0024906:73809-73828 | Msa1421060:intron | 45.0% | |
| TGCATACCCTATCCACAAAG+AGG | + | tig0024906:73818-73837 | None:intergenic | 45.0% | |
| TTGTCTGCTTGAGGAGCTTT+AGG | + | tig0024906:74250-74269 | None:intergenic | 45.0% | |
| CGAAGAGGTAAATACTCCTG+TGG | - | tig0024906:74470-74489 | Msa1421060:intron | 45.0% | |
| ! | GTTGAAGGAGATGGTGTTGA+TGG | - | tig0024906:74565-74584 | Msa1421060:intron | 45.0% |
| !!! | GGAGATGGTGTTGATGGTTT+TGG | - | tig0024906:74571-74590 | Msa1421060:intron | 45.0% |
| CGCCTTAATGGTCAGAATTC+AGG | + | tig0024906:75352-75371 | None:intergenic | 45.0% | |
| !! | CTGTGATGGTGGATGATTGC+AGG | - | tig0024906:72745-72764 | Msa1421060:three_prime_UTR | 50.0% |
| CCTCTCTCACAGTAACTGCT+AGG | + | tig0024906:73545-73564 | None:intergenic | 50.0% | |
| CCTAGCAGTTACTGTGAGAG+AGG | - | tig0024906:73542-73561 | Msa1421060:intron | 50.0% | |
| AGCAGTTACTGTGAGAGAGG+TGG | - | tig0024906:73545-73564 | Msa1421060:intron | 50.0% | |
| TGGTTACATTGAGCGCGAAG+AGG | - | tig0024906:74455-74474 | Msa1421060:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024906 | gene | 72474 | 75438 | 72474 | ID=Msa1421060;Name=Msa1421060 |
| tig0024906 | mRNA | 72474 | 75438 | 72474 | ID=Msa1421060-mRNA-1;Parent=Msa1421060;Name=Msa1421060-mRNA-1;_AED=0.16;_eAED=0.16;_QI=186|1|1|1|0.87|0.77|9|432|239 |
| tig0024906 | exon | 72474 | 72969 | 72474 | ID=Msa1421060-mRNA-1:exon:1893;Parent=Msa1421060-mRNA-1 |
| tig0024906 | exon | 73057 | 73169 | 73057 | ID=Msa1421060-mRNA-1:exon:1892;Parent=Msa1421060-mRNA-1 |
| tig0024906 | exon | 73266 | 73346 | 73266 | ID=Msa1421060-mRNA-1:exon:1891;Parent=Msa1421060-mRNA-1 |
| tig0024906 | exon | 73436 | 73488 | 73436 | ID=Msa1421060-mRNA-1:exon:1890;Parent=Msa1421060-mRNA-1 |
| tig0024906 | exon | 73635 | 73743 | 73635 | ID=Msa1421060-mRNA-1:exon:1889;Parent=Msa1421060-mRNA-1 |
| tig0024906 | exon | 74082 | 74141 | 74082 | ID=Msa1421060-mRNA-1:exon:1888;Parent=Msa1421060-mRNA-1 |
| tig0024906 | exon | 74280 | 74362 | 74280 | ID=Msa1421060-mRNA-1:exon:1887;Parent=Msa1421060-mRNA-1 |
| tig0024906 | exon | 74915 | 75080 | 74915 | ID=Msa1421060-mRNA-1:exon:1886;Parent=Msa1421060-mRNA-1 |
| tig0024906 | exon | 75262 | 75438 | 75262 | ID=Msa1421060-mRNA-1:exon:1885;Parent=Msa1421060-mRNA-1 |
| tig0024906 | five_prime_UTR | 75262 | 75438 | 75262 | ID=Msa1421060-mRNA-1:five_prime_utr;Parent=Msa1421060-mRNA-1 |
| tig0024906 | five_prime_UTR | 75072 | 75080 | 75072 | ID=Msa1421060-mRNA-1:five_prime_utr;Parent=Msa1421060-mRNA-1 |
| tig0024906 | CDS | 74915 | 75071 | 74915 | ID=Msa1421060-mRNA-1:cds;Parent=Msa1421060-mRNA-1 |
| tig0024906 | CDS | 74280 | 74362 | 74280 | ID=Msa1421060-mRNA-1:cds;Parent=Msa1421060-mRNA-1 |
| tig0024906 | CDS | 74082 | 74141 | 74082 | ID=Msa1421060-mRNA-1:cds;Parent=Msa1421060-mRNA-1 |
| tig0024906 | CDS | 73635 | 73743 | 73635 | ID=Msa1421060-mRNA-1:cds;Parent=Msa1421060-mRNA-1 |
| tig0024906 | CDS | 73436 | 73488 | 73436 | ID=Msa1421060-mRNA-1:cds;Parent=Msa1421060-mRNA-1 |
| tig0024906 | CDS | 73266 | 73346 | 73266 | ID=Msa1421060-mRNA-1:cds;Parent=Msa1421060-mRNA-1 |
| tig0024906 | CDS | 73057 | 73169 | 73057 | ID=Msa1421060-mRNA-1:cds;Parent=Msa1421060-mRNA-1 |
| tig0024906 | CDS | 72906 | 72969 | 72906 | ID=Msa1421060-mRNA-1:cds;Parent=Msa1421060-mRNA-1 |
| tig0024906 | three_prime_UTR | 72474 | 72905 | 72474 | ID=Msa1421060-mRNA-1:three_prime_utr;Parent=Msa1421060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
