AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0037540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037540 MtrunA17_Chr1g0195891 98.555 346 1 2 1 345 1 343 0.0 684
Msa0037540 MtrunA17_Chr1g0195891 53.947 76 33 1 297 370 91 166 3.50e-21 94.7
Msa0037540 MtrunA17_Chr4g0066941 53.069 505 176 11 4 459 5 497 3.89e-144 422
Msa0037540 MtrunA17_Chr2g0286151 51.282 468 191 13 1 444 1 455 1.93e-129 384
Msa0037540 MtrunA17_Chr7g0249221 48.626 364 171 8 33 386 9 366 3.62e-108 327
Msa0037540 MtrunA17_Chr5g0438891 36.923 390 209 10 48 433 36 392 2.33e-76 245
Msa0037540 MtrunA17_Chr5g0438891 37.838 111 57 3 12 122 237 335 9.98e-16 79.0
Msa0037540 MtrunA17_Chr5g0438891 38.614 101 50 2 293 388 32 125 2.90e-15 77.8
Msa0037540 MtrunA17_Chr4g0058011 36.207 348 168 13 44 374 227 537 4.87e-61 209
Msa0037540 MtrunA17_Chr4g0058011 50.538 93 43 1 93 185 458 547 1.57e-21 97.8
Msa0037540 MtrunA17_Chr3g0116431 34.985 343 177 9 42 370 165 475 5.02e-59 202
Msa0037540 MtrunA17_Chr3g0116431 47.368 114 54 3 92 204 399 507 1.81e-20 94.0
Msa0037540 MtrunA17_Chr3g0116431 35.000 100 58 2 297 393 171 266 8.73e-13 70.5
Msa0037540 MtrunA17_Chr1g0195901 96.970 99 3 0 374 472 1 99 9.57e-56 180
Msa0037540 MtrunA17_Chr8g0356241 33.803 355 197 9 42 370 132 474 1.14e-55 193
Msa0037540 MtrunA17_Chr8g0356241 36.025 161 56 3 56 170 317 476 2.21e-23 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037540 AT2G47850.1 64.990 477 148 9 3 472 1 465 0.0 573
Msa0037540 AT2G47850.3 64.990 477 148 9 3 472 1 465 0.0 573
Msa0037540 AT2G47850.2 60.168 477 145 10 3 472 1 439 8.97e-178 506
Msa0037540 AT2G47850.4 63.818 351 112 7 129 472 1 343 2.98e-136 396
Msa0037540 AT2G47850.4 53.571 84 39 0 86 169 157 240 1.50e-23 102
Msa0037540 AT2G47850.4 41.414 99 51 2 46 137 162 260 2.30e-16 80.9
Msa0037540 AT5G18550.1 49.036 467 198 15 19 465 18 464 1.82e-125 373
Msa0037540 AT5G18550.4 52.267 419 162 13 19 417 18 418 2.88e-125 372
Msa0037540 AT5G18550.3 49.087 438 186 12 46 465 14 432 5.17e-123 366
Msa0037540 AT3G06410.1 52.184 412 169 11 1 393 1 403 5.03e-119 357
Msa0037540 AT5G18550.2 47.629 464 196 15 19 465 18 451 1.06e-118 355
Msa0037540 AT3G02830.1 46.154 364 166 7 33 386 19 362 3.88e-102 311
Msa0037540 AT3G02830.2 46.409 362 164 7 35 386 1 342 1.24e-101 309
Msa0037540 AT5G16540.1 43.003 393 154 13 33 410 20 357 1.91e-90 280
Msa0037540 AT5G16540.1 37.107 159 78 6 297 446 84 229 2.60e-20 92.8
Msa0037540 AT5G16540.3 43.223 391 152 13 35 410 1 336 4.14e-90 279
Msa0037540 AT5G16540.3 37.107 159 78 6 297 446 63 208 2.16e-20 92.8
Msa0037540 AT5G16540.2 41.432 391 156 13 33 410 20 350 3.69e-84 264
Msa0037540 AT5G16540.2 37.107 159 78 6 297 446 84 229 1.98e-20 93.2
Msa0037540 AT5G16540.4 43.614 321 119 11 35 345 1 269 3.76e-75 237
Msa0037540 AT5G16540.4 37.107 159 78 6 297 446 63 208 9.78e-21 92.4
Msa0037540 AT5G16540.4 43.878 98 50 2 297 393 18 111 5.83e-17 81.3
Msa0037540 AT1G04990.1 35.475 358 171 9 28 370 21 333 2.08e-64 214
Msa0037540 AT1G04990.6 35.475 358 171 9 28 370 21 333 2.08e-64 214
Msa0037540 AT1G04990.2 35.475 358 171 9 28 370 21 333 2.08e-64 214
Msa0037540 AT3G48440.1 35.511 352 192 9 48 387 107 435 4.96e-62 209
Msa0037540 AT3G48440.1 33.858 127 34 2 294 370 104 230 2.80e-15 78.2
Msa0037540 AT3G48440.1 39.241 79 45 2 45 121 340 417 3.61e-11 65.5
Msa0037540 AT2G32930.2 34.667 375 195 12 31 392 21 358 1.69e-58 199
Msa0037540 AT2G32930.3 36.338 355 179 11 48 392 14 331 2.62e-58 198
Msa0037540 AT1G04990.5 33.708 356 160 9 28 370 21 313 1.08e-56 193
Msa0037540 AT1G04990.5 38.043 92 56 1 297 388 44 134 7.13e-14 73.6
Msa0037540 AT5G63260.1 35.429 350 189 11 48 386 98 421 5.59e-54 187
Msa0037540 AT5G63260.1 42.718 103 54 1 89 191 327 424 2.07e-18 87.8
Msa0037540 AT5G63260.1 32.394 142 41 3 296 388 97 232 3.20e-15 78.2
Msa0037540 AT5G63260.1 38.462 78 47 1 45 121 328 405 3.49e-12 68.6
Msa0037540 AT2G32930.1 33.867 375 194 13 31 392 21 354 1.48e-53 186
Msa0037540 AT3G12680.1 33.705 359 195 9 33 370 163 499 7.01e-52 184
Msa0037540 AT3G12680.1 39.024 164 58 4 49 170 338 501 5.68e-27 114
Msa0037540 AT3G12680.1 41.748 103 51 2 28 122 398 499 1.73e-17 85.5
Msa0037540 AT5G63260.2 33.880 366 189 11 48 386 98 437 1.29e-51 181
Msa0037540 AT5G63260.2 42.718 103 54 1 89 191 343 440 2.03e-18 87.8
Msa0037540 AT5G63260.2 45.652 92 42 2 299 388 163 248 7.92e-18 86.3
Msa0037540 AT5G63260.2 38.462 78 47 1 45 121 344 421 3.86e-12 68.6
Msa0037540 AT1G04990.3 35.714 280 125 7 103 370 16 252 3.31e-44 158
Msa0037540 AT1G04990.3 48.571 70 36 0 59 128 17 86 7.62e-18 84.7
Msa0037540 AT1G04990.3 38.017 121 61 4 81 190 165 282 1.10e-13 72.4
Msa0037540 AT1G04990.4 33.453 278 114 7 103 370 16 232 7.57e-37 137
Msa0037540 AT1G04990.4 48.571 70 36 0 59 128 17 86 9.73e-18 84.3
Msa0037540 AT1G48195.1 51.250 80 37 1 292 369 1 80 3.65e-20 85.1
Msa0037540 AT1G48195.1 52.000 75 36 0 93 167 6 80 1.43e-18 80.5

Find 192 sgRNAs with CRISPR-Local

Find 405 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGGGGTTGTTCCATTTCC+TGG 0.149575 1_1:+66578354 Msa0037540:CDS
ACCGGTTCACCGGGTCTTTC+AGG 0.153591 1_1:-66578673 None:intergenic
AAAACTGGAACCTGTAAATT+TGG 0.163743 1_1:+66577894 Msa0037540:CDS
AAAACGGGGCAGTGCAAATT+TGG 0.196691 1_1:+66578126 Msa0037540:CDS
AGAACTGGGGACTGTAAATT+TGG 0.217131 1_1:+66578712 Msa0037540:CDS
CAAGCTCCACTAAATATTTA+TGG 0.224349 1_1:+66577966 Msa0037540:CDS
CGAGAGAGACAGAAAGAAAA+TGG 0.228655 1_1:-66576779 None:intergenic
CTTCAACATCTTCAGAATTT+CGG 0.252360 1_1:+66581045 Msa0037540:CDS
ATGCTCCTCTCAGTATTTAA+TGG 0.254508 1_1:+66581325 Msa0037540:three_prime_UTR
CAAAATGGGCACTGCAAGTT+TGG 0.265662 1_1:+66580903 Msa0037540:CDS
CTGGCGCGCAACCTGCTGTT+GGG 0.306993 1_1:+66578530 Msa0037540:CDS
ACAAGACGCGCCAAATTTAC+AGG 0.307599 1_1:-66577904 None:intergenic
CTTCATACTATTATGCTTTG+TGG 0.327068 1_1:+66581485 Msa0037540:three_prime_UTR
GAAGAGGGCAGAGGAGTATA+AGG 0.330274 1_1:-66578610 None:intergenic
TCCTGAAGTGTGTTTCCTCC+AGG 0.341736 1_1:-66578640 None:intergenic
GGAGATAACACAGGGCTTAC+AGG 0.346214 1_1:-66578508 None:intergenic
TCCTGGATGGAGTCCTTATT+CGG 0.346285 1_1:+66578371 Msa0037540:CDS
CTGCCCTCTTCTCCTGGCCC+TGG 0.347929 1_1:+66578622 Msa0037540:CDS
GTTGGGGCTACTTCTCTTTA+CGG 0.355067 1_1:+66578547 Msa0037540:CDS
TGCTCCTATTATTTGAAAAC+GGG 0.359605 1_1:+66578111 Msa0037540:CDS
CATTCTGGCTGAAAAGGAAT+TGG 0.360799 1_1:-66581087 None:intergenic
CATTCATCTGGAAATGGTTC+TGG 0.366848 1_1:+66581110 Msa0037540:CDS
TCATATGTACAAGGGGCTTA+TGG 0.368244 1_1:+66578315 Msa0037540:CDS
CCAACAGCAGGTTGCGCGCC+AGG 0.368459 1_1:-66578529 None:intergenic
AAAGAGAGTTAGCGATTTAG+AGG 0.369711 1_1:+66581573 Msa0037540:three_prime_UTR
CGACCACTTCTTAGTCCCTT+TGG 0.371098 1_1:+66578778 Msa0037540:CDS
TATGTGTCTCTTACCGAATA+AGG 0.372520 1_1:-66578384 None:intergenic
TAGAATGATCTAGAATGTTC+TGG 0.372795 1_1:-66576850 None:intergenic
TGCCAATACTATATGAGAAC+TGG 0.381157 1_1:+66578697 Msa0037540:CDS
TAAGATGATTATGTTTAGAC+AGG 0.383054 1_1:+66581522 Msa0037540:three_prime_UTR
GCTGCTGATGCTACTGCTCT+TGG 0.385955 1_1:+66577018 Msa0037540:CDS
ACTCCTCTGCCCTCTTCTCC+TGG 0.392892 1_1:+66578616 Msa0037540:CDS
CTCGACTCGACGAGGAAGTT+AGG 0.394395 1_1:+66576798 Msa0037540:five_prime_UTR
GGAGGTTCGCCAAGCCTCTC+CGG 0.397154 1_1:-66577747 None:intergenic
AGAGTCGAACCGGTCGTAAT+GGG 0.398417 1_1:-66577992 None:intergenic
TGTGCTTATTATATGAGAAC+CGG 0.398738 1_1:+66577222 Msa0037540:CDS
TGCAGTGCAAAACTGACATT+CGG 0.398789 1_1:-66581598 None:intergenic
TTGGATCCTGACTTCAGTTC+AGG 0.402122 1_1:-66581068 None:intergenic
CCTGGCGCGCAACCTGCTGT+TGG 0.402151 1_1:+66578529 Msa0037540:CDS
AAGAGTCGAACCGGTCGTAA+TGG 0.402365 1_1:-66577993 None:intergenic
TCAGCCAGAATGCATTCATC+TGG 0.404570 1_1:+66581098 Msa0037540:CDS
AGCCCCTTGTACATATGAAC+CGG 0.406272 1_1:-66578310 None:intergenic
TAAGGACTCCATCCAGGAAA+TGG 0.406810 1_1:-66578366 None:intergenic
TGAATGCATTCTGGCTGAAA+AGG 0.407290 1_1:-66581093 None:intergenic
GGTGGGTCTGTCTCACTGTC+TGG 0.408100 1_1:+66581161 Msa0037540:CDS
GTGCTCCTATTATTTGAAAA+CGG 0.410929 1_1:+66578110 Msa0037540:CDS
GTGTTTACGAGAAAGGAAAA+TGG 0.411487 1_1:-66576889 None:intergenic
CATAAATATTTAGTGGAGCT+TGG 0.417854 1_1:-66577965 None:intergenic
CTGTACAGTGTTTACGAGAA+AGG 0.418611 1_1:-66576896 None:intergenic
CCTCCTCTGCCGGAACAGTT+TGG 0.418933 1_1:+66578243 Msa0037540:CDS
TCCTGAAAGACCCGGTGAAC+CGG 0.419994 1_1:+66578672 Msa0037540:CDS
TTCGGTACACCATGTCTCTC+CGG 0.421325 1_1:-66577198 None:intergenic
CCAACTGGGTATGGAGCAAC+TGG 0.428649 1_1:-66580999 None:intergenic
TATGCTTTGTGGACTTATGC+TGG 0.433115 1_1:+66581496 Msa0037540:three_prime_UTR
GGTCCCGTGCTTCTTTCCCC+AGG 0.436024 1_1:+66578336 Msa0037540:CDS
CCCTGGAGGAAACACACTTC+AGG 0.438306 1_1:+66578639 Msa0037540:CDS
ATTTCCAGATGAATGCATTC+TGG 0.440875 1_1:-66581102 None:intergenic
GCTGCTGCAGTAAGAGCTAC+AGG 0.442302 1_1:+66577717 Msa0037540:CDS
CAGTTGCTCCATACCCAGTT+GGG 0.446844 1_1:+66581000 Msa0037540:CDS
AATGGTTCTGGTACCTCTGT+TGG 0.448422 1_1:+66581122 Msa0037540:CDS
CATTTATCACTTGGTGGTGG+TGG 0.458400 1_1:+66577162 Msa0037540:CDS
CTCATATAATAAGCACAATT+CGG 0.458439 1_1:-66577216 None:intergenic
CCTGAAGTGTGTTTCCTCCA+GGG 0.458829 1_1:-66578639 None:intergenic
AGTAAAGACCCAACTGGGTA+TGG 0.465151 1_1:-66581008 None:intergenic
GGGTTGTTCCATTTCCTGGA+TGG 0.465512 1_1:+66578358 Msa0037540:CDS
GAAGCTCCTCCAAACTGTTC+CGG 0.468963 1_1:-66578252 None:intergenic
GAGAGAGACAGAAAGAAAAT+GGG 0.469232 1_1:-66576778 None:intergenic
CTCATATAGTATTGGCAGAC+CGG 0.470230 1_1:-66578691 None:intergenic
CTTTGGTCTTCCTCTACGCC+CGG 0.470273 1_1:+66578795 Msa0037540:CDS
GTCCCGTGCTTCTTTCCCCA+GGG 0.477072 1_1:+66578337 Msa0037540:CDS
CCAGTTGCTCCATACCCAGT+TGG 0.481757 1_1:+66580999 Msa0037540:CDS
AGAATGCATTCATCTGGAAA+TGG 0.482468 1_1:+66581104 Msa0037540:CDS
TCCTCCAGGGCCAGGAGAAG+AGG 0.485909 1_1:-66578626 None:intergenic
CTTTCTCGTAAACACTGTAC+AGG 0.487912 1_1:+66576897 Msa0037540:five_prime_UTR
CCAGGAAATGGAACAACCCC+TGG 0.488180 1_1:-66578354 None:intergenic
GCTTGGCGAACCTCCATGTC+AGG 0.489422 1_1:+66577755 Msa0037540:CDS
CCCCAGTTCTCATATAGTAT+TGG 0.489917 1_1:-66578699 None:intergenic
CTGAAGATGTTGAAGGAACC+AGG 0.490486 1_1:-66581037 None:intergenic
GTAAGCCCTGTGTTATCTCC+TGG 0.490761 1_1:+66578511 Msa0037540:CDS
CCCTCTTCTCCTGGCCCTGG+AGG 0.494580 1_1:+66578625 Msa0037540:CDS
GGGTATCCATAAATATTTAG+TGG 0.496866 1_1:-66577972 None:intergenic
TTAGATAGTAAAGACCCAAC+TGG 0.497066 1_1:-66581014 None:intergenic
ACCCCTGGGGAAAGAAGCAC+GGG 0.497178 1_1:-66578339 None:intergenic
CGCCATTCATGTTGATTAAG+CGG 0.499950 1_1:-66576988 None:intergenic
GGTCGGAGCCCCACTAGAAA+CGG 0.501024 1_1:+66576958 Msa0037540:CDS
GCAGTGCAAAACTGACATTC+GGG 0.502440 1_1:-66581597 None:intergenic
CCTCTGCCGGAACAGTTTGG+AGG 0.503926 1_1:+66578246 Msa0037540:CDS
TGCAAGTTTGATCATCCTGC+GGG 0.504011 1_1:+66580933 Msa0037540:CDS
CCTCCAAACTGTTCCGGCAG+AGG 0.504937 1_1:-66578246 None:intergenic
TGGGTCTTTACTATCTAACC+TGG 0.505387 1_1:+66581019 Msa0037540:CDS
GGGGACTACCCGGAGAGGCT+TGG 0.507506 1_1:+66577738 Msa0037540:CDS
CGGGTTGGATCCGTTTCTAG+TGG 0.508512 1_1:-66576968 None:intergenic
GCCATTCATGTTGATTAAGC+GGG 0.509081 1_1:-66576987 None:intergenic
GGGTTGGATCCGTTTCTAGT+GGG 0.515461 1_1:-66576967 None:intergenic
AGTGTGTTTCCTCCAGGGCC+AGG 0.516627 1_1:-66578634 None:intergenic
TTCATGTTGATTAAGCGGGT+TGG 0.518663 1_1:-66576983 None:intergenic
TCTTTACCTTTGTACAGAGC+AGG 0.520007 1_1:-66581555 None:intergenic
TTTCGGCCTGAACTGAAGTC+AGG 0.521259 1_1:+66581062 Msa0037540:CDS
CAGAGTTCTGCTTCTTTGAA+CGG 0.524210 1_1:+66581200 Msa0037540:CDS
CGAAATTCTGAAGATGTTGA+AGG 0.524251 1_1:-66581044 None:intergenic
ACCGAATAAGGACTCCATCC+AGG 0.527011 1_1:-66578372 None:intergenic
CCTCCAGGGCCAGGAGAAGA+GGG 0.528497 1_1:-66578625 None:intergenic
GGGCCAGGAGAAGAGGGCAG+AGG 0.530606 1_1:-66578619 None:intergenic
GCTGATGCTACTGCTCTTGG+AGG 0.530886 1_1:+66577021 Msa0037540:CDS
GTATTGGCAGACCGGTTCAC+CGG 0.534770 1_1:-66578683 None:intergenic
GATCACGCGGGTGATTGAAA+CGG 0.536117 1_1:-66577269 None:intergenic
CTCTCTCTCTGGAAACTGTA+CGG 0.536785 1_1:-66576663 None:intergenic
GAGGTTCGCCAAGCCTCTCC+GGG 0.539007 1_1:-66577746 None:intergenic
TCCAACGGTTCCTCCTCTGC+CGG 0.542744 1_1:+66578233 Msa0037540:CDS
TTCCACCATCCTCAACCTGC+TGG 0.542831 1_1:+66578162 Msa0037540:CDS
AGAGAAGTAGCCCCAACAGC+AGG 0.544267 1_1:-66578541 None:intergenic
ATATCATCATCCACGGGACC+AGG 0.545094 1_1:+66578747 Msa0037540:CDS
ATGTGGCATTTATCACTTGG+TGG 0.548863 1_1:+66577156 Msa0037540:CDS
TCGGTACACCATGTCTCTCC+GGG 0.549964 1_1:-66577197 None:intergenic
TCCGGCAGAGGAGGAACCGT+TGG 0.550152 1_1:-66578234 None:intergenic
AATGAAGTGCCAGCAGGTTG+AGG 0.551017 1_1:-66578171 None:intergenic
TATTGGCAGACCGGTTCACC+GGG 0.551065 1_1:-66578682 None:intergenic
CCGTGGATGATGATATCGAC+AGG 0.551295 1_1:-66578740 None:intergenic
CGTTCAAAGAAGCAGAACTC+TGG 0.551424 1_1:-66581199 None:intergenic
AGAGCAGTAGCATCAGCAGC+AGG 0.552367 1_1:-66577015 None:intergenic
ACCCGCTTAATCAACATGAA+TGG 0.553551 1_1:+66576986 Msa0037540:CDS
CACACGAACGAGAGAACACA+AGG 0.555271 1_1:+66576737 Msa0037540:five_prime_UTR
TGCCAGCAGGTTGAGGATGG+TGG 0.556077 1_1:-66578164 None:intergenic
TCGATGTGGCATTTATCACT+TGG 0.559752 1_1:+66577153 Msa0037540:CDS
CCAAACTGTTCCGGCAGAGG+AGG 0.560230 1_1:-66578243 None:intergenic
GCCAATACTATATGAGAACT+GGG 0.562063 1_1:+66578698 Msa0037540:CDS
AGCACACAAGAATCACGATT+GGG 0.562359 1_1:-66581389 None:intergenic
GGGCGTAGAGGAAGACCAAA+GGG 0.563721 1_1:-66578793 None:intergenic
TAAAATTGAGGTGCAGATGC+TGG 0.564467 1_1:-66578195 None:intergenic
AACCCCTGGGGAAAGAAGCA+CGG 0.566411 1_1:-66578340 None:intergenic
TGGCGCGCAACCTGCTGTTG+GGG 0.568122 1_1:+66578531 Msa0037540:CDS
GAAGTGGTCGTGCAGCAACC+TGG 0.569368 1_1:-66578765 None:intergenic
GCTAGACCTCCTGTGTTACC+CGG 0.569379 1_1:+66578291 Msa0037540:CDS
TCTAGAATGTTCTGGAAGAT+CGG 0.571009 1_1:-66576842 None:intergenic
CAGGAAATGGAACAACCCCT+GGG 0.572341 1_1:-66578353 None:intergenic
CTGTCTCTCTCGACTCGACG+AGG 0.573937 1_1:+66576790 Msa0037540:five_prime_UTR
AGCTTCTGCAAGTGTGAGAG+TGG 0.577326 1_1:+66578269 Msa0037540:CDS
TTTCTTCCTGCTCTGTACAA+AGG 0.580033 1_1:+66581549 Msa0037540:three_prime_UTR
TGGCATTTATCACTTGGTGG+TGG 0.580267 1_1:+66577159 Msa0037540:CDS
TCAACAGGTGCAGTCTCCAA+CGG 0.580807 1_1:+66578218 Msa0037540:CDS
CGTGCAGCAACCTGGTCCCG+TGG 0.581143 1_1:-66578757 None:intergenic
CTGTATCTCATTGACCCCGC+AGG 0.585745 1_1:-66580948 None:intergenic
GTGCTTATTATATGAGAACC+GGG 0.587111 1_1:+66577223 Msa0037540:CDS
TAGCACACAAGAATCACGAT+TGG 0.588728 1_1:-66581390 None:intergenic
TCAATAAGAGAAGATGCTGA+TGG 0.590082 1_1:-66580972 None:intergenic
GGTTGGATCCGTTTCTAGTG+GGG 0.592076 1_1:-66576966 None:intergenic
AAACAAAATTATACCTGACA+TGG 0.597128 1_1:-66577768 None:intergenic
TTACCCGGTTCATATGTACA+AGG 0.598382 1_1:+66578306 Msa0037540:CDS
ACCATTCATACCGGGCGTAG+AGG 0.599219 1_1:-66578805 None:intergenic
TTATGGATACCCATTACGAC+CGG 0.600721 1_1:+66577983 Msa0037540:CDS
AAGAGCTACAGGGGACTACC+CGG 0.601311 1_1:+66577728 Msa0037540:CDS
CTGCTGCAGTAAGAGCTACA+GGG 0.603414 1_1:+66577718 Msa0037540:CDS
GAATCTTACCCGGAGAGACA+TGG 0.604072 1_1:+66577189 Msa0037540:CDS
AGGAGCATGAACAGAAGCAA+TGG 0.605978 1_1:-66581310 None:intergenic
AAGAGAGTTAGCGATTTAGA+GGG 0.608238 1_1:+66581574 Msa0037540:three_prime_UTR
AGCATGAACAGAAGCAATGG+TGG 0.610209 1_1:-66581307 None:intergenic
CCTGTCGATATCATCATCCA+CGG 0.616717 1_1:+66578740 Msa0037540:CDS
ACCCGGTTCATATGTACAAG+GGG 0.619952 1_1:+66578308 Msa0037540:CDS
TGCGCGCCAGGAGATAACAC+AGG 0.621580 1_1:-66578517 None:intergenic
GCTGGCAATGAAGTGCCAGC+AGG 0.622750 1_1:-66578177 None:intergenic
TCCACCATATCCACAAAACC+CGG 0.626060 1_1:-66577241 None:intergenic
TAGATAGTAAAGACCCAACT+GGG 0.626186 1_1:-66581013 None:intergenic
ATTCTTGTGTGCTATACACC+AGG 0.628639 1_1:+66581399 Msa0037540:three_prime_UTR
CTGTCGATATCATCATCCAC+GGG 0.629057 1_1:+66578741 Msa0037540:CDS
TCCCGTGCTTCTTTCCCCAG+GGG 0.630198 1_1:+66578338 Msa0037540:CDS
TGCACCTGTTGATAAAATTG+AGG 0.642079 1_1:-66578207 None:intergenic
GCCCCTTGTACATATGAACC+GGG 0.643721 1_1:-66578309 None:intergenic
AAGATGATTATGTTTAGACA+GGG 0.643889 1_1:+66581523 Msa0037540:three_prime_UTR
TGGTGGTGTTGAATCTTACC+CGG 0.644232 1_1:+66577179 Msa0037540:CDS
AGCAGAAGCAGCAGACAGAG+TGG 0.645532 1_1:+66581224 Msa0037540:CDS
ACATATGAACCGGGTAACAC+AGG 0.645643 1_1:-66578300 None:intergenic
ATTACCGCAGCACGATCACG+CGG 0.645892 1_1:-66577282 None:intergenic
ATGCAAGTTTGATCATCCTG+CGG 0.650257 1_1:+66580932 Msa0037540:CDS
AGACCAAAGGGACTAAGAAG+TGG 0.653237 1_1:-66578781 None:intergenic
AAGTGCCAGCAGGTTGAGGA+TGG 0.654749 1_1:-66578167 None:intergenic
CAAAATTATACCTGACATGG+AGG 0.657604 1_1:-66577765 None:intergenic
TACCCGGTTCATATGTACAA+GGG 0.670537 1_1:+66578307 Msa0037540:CDS
GCTCCTATTATTTGAAAACG+GGG 0.671672 1_1:+66578112 Msa0037540:CDS
CGGGCGTAGAGGAAGACCAA+AGG 0.672188 1_1:-66578794 None:intergenic
TCACCCGCGTGATCGTGCTG+CGG 0.674265 1_1:+66577278 Msa0037540:CDS
AAAGTATTTCCTGAAAGACC+CGG 0.677421 1_1:+66578664 Msa0037540:CDS
GCGCGCCAGGAGATAACACA+GGG 0.680593 1_1:-66578516 None:intergenic
CTACAGGGGACTACCCGGAG+AGG 0.687189 1_1:+66577733 Msa0037540:CDS
AAGCATAAAAGAGAATGACC+TGG 0.694248 1_1:-66581417 None:intergenic
TGCTGCAGTAAGAGCTACAG+GGG 0.695738 1_1:+66577719 Msa0037540:CDS
GTTTATGTTCAGAGTCGATG+TGG 0.699078 1_1:+66577139 Msa0037540:intron
TATGAACCGGGTAACACAGG+AGG 0.706559 1_1:-66578297 None:intergenic
AGTTGCCATTAAATACTGAG+AGG 0.712026 1_1:-66581330 None:intergenic
AGGAAATGGAACAACCCCTG+GGG 0.738169 1_1:-66578352 None:intergenic
CCAATACTATATGAGAACTG+GGG 0.738213 1_1:+66578699 Msa0037540:CDS
TTACCGCAGCACGATCACGC+GGG 0.739210 1_1:-66577281 None:intergenic
GCAAGTTTGATCATCCTGCG+GGG 0.750469 1_1:+66580934 Msa0037540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTTTGTAATTTATTAATT+AGG + chr1_1:66577099-66577118 Msa0037540:intron 10.0%
!! TTAATTGAATTTAACAATTT+AGG - chr1_1:66577419-66577438 None:intergenic 10.0%
!! AAATTGTTAAATTCAATTAA+AGG + chr1_1:66577419-66577438 Msa0037540:intron 10.0%
!!! CATTTTTTTCAATTTTTTAT+CGG + chr1_1:66577482-66577501 Msa0037540:intron 10.0%
!! ATATTATTTACACATTTATA+TGG - chr1_1:66578923-66578942 None:intergenic 10.0%
!! AAAAAATAAAATGAATGTTA+AGG - chr1_1:66579151-66579170 None:intergenic 10.0%
!!! CATTATTTGTATATTTTTTA+TGG + chr1_1:66579849-66579868 Msa0037540:intron 10.0%
!! AAATAATATGTATTCTATTC+AGG + chr1_1:66578934-66578953 Msa0037540:intron 15.0%
!! AAATAAACACATTAATAGTT+GGG - chr1_1:66579277-66579296 None:intergenic 15.0%
!!! ATTCAGACATTTATTTTAAT+CGG - chr1_1:66580796-66580815 None:intergenic 15.0%
!!! TAATTTATTTTCTAGAAAAC+AGG + chr1_1:66580854-66580873 Msa0037540:intron 15.0%
!!! AATTTATTTTCTAGAAAACA+GGG + chr1_1:66580855-66580874 Msa0037540:intron 15.0%
!!! TTTTGTATATAAAATGAACA+AGG - chr1_1:66580888-66580907 None:intergenic 15.0%
!!! TGTTCATTTTATATACAAAA+TGG + chr1_1:66580888-66580907 Msa0037540:CDS 15.0%
!!! GTTCATTTTATATACAAAAT+GGG + chr1_1:66580889-66580908 Msa0037540:CDS 15.0%
!!! TTTGTTTGGGTTTTTTTTTT+AGG - chr1_1:66576925-66576944 None:intergenic 20.0%
!! AAAAAAAACCCAAACAAAAA+TGG + chr1_1:66576927-66576946 Msa0037540:exon 20.0%
!! ATGTTATGTTATGTTATGTT+AGG + chr1_1:66577076-66577095 Msa0037540:intron 20.0%
!! TGTTATGTTATGTTATGTTA+GGG + chr1_1:66577077-66577096 Msa0037540:intron 20.0%
!!! ATTAATTAGGGTTTTGATTT+TGG + chr1_1:66577112-66577131 Msa0037540:intron 20.0%
!! TAAAAGGGTTATACTAATTA+CGG + chr1_1:66577844-66577863 Msa0037540:intron 20.0%
!! GAACAGTATTATTTAAAAAC+TGG + chr1_1:66577879-66577898 Msa0037540:intron 20.0%
!! AATTCTCTGTAAATTACATA+AGG - chr1_1:66578036-66578055 None:intergenic 20.0%
!!! TTTACAGAGAATTTTTCATA+TGG + chr1_1:66578043-66578062 Msa0037540:intron 20.0%
!!! TATATATGTGATCTGAAATA+TGG + chr1_1:66578413-66578432 Msa0037540:intron 20.0%
!!! CAAATCTCCTTTTAAAAAAA+GGG + chr1_1:66578997-66579016 Msa0037540:intron 20.0%
!! CAAATAAACACATTAATAGT+TGG - chr1_1:66579278-66579297 None:intergenic 20.0%
!! CAACTATTAATGTGTTTATT+TGG + chr1_1:66579276-66579295 Msa0037540:intron 20.0%
!! TAATATCACGTTCATTAAAA+AGG - chr1_1:66580221-66580240 None:intergenic 20.0%
!! TTAACTATCAATTCTGAATT+AGG - chr1_1:66580370-66580389 None:intergenic 20.0%
!!! ATTACTTCGTAAGTAAATTT+TGG + chr1_1:66580561-66580580 Msa0037540:intron 20.0%
!!! TAATCTAAAGCTACTTAATA+TGG - chr1_1:66580712-66580731 None:intergenic 20.0%
! CTCATATAATAAGCACAATT+CGG - chr1_1:66577219-66577238 None:intergenic 25.0%
! TGCATAAACCTATATTAGTA+AGG + chr1_1:66577591-66577610 Msa0037540:intron 25.0%
!!! CCTTTTTTCCTTACTAATAT+AGG - chr1_1:66577602-66577621 None:intergenic 25.0%
! CCTATATTAGTAAGGAAAAA+AGG + chr1_1:66577599-66577618 Msa0037540:intron 25.0%
! AAACAAAATTATACCTGACA+TGG - chr1_1:66577771-66577790 None:intergenic 25.0%
! AAAAGGGTTATACTAATTAC+GGG + chr1_1:66577845-66577864 Msa0037540:intron 25.0%
! ATATGGTTAAACTTAAACCA+TGG + chr1_1:66578060-66578079 Msa0037540:intron 25.0%
!! TGATGATTTTAAATTAGTGC+AGG + chr1_1:66578483-66578502 Msa0037540:intron 25.0%
!!! TAAACTATAAGAAGTACTGA+TGG - chr1_1:66578972-66578991 None:intergenic 25.0%
! ATCAGTACTTCTTATAGTTT+AGG + chr1_1:66578971-66578990 Msa0037540:intron 25.0%
!!! CCTTTTTTTAAAAGGAGATT+TGG - chr1_1:66578999-66579018 None:intergenic 25.0%
!!! CCAAATCTCCTTTTAAAAAA+AGG + chr1_1:66578996-66579015 Msa0037540:intron 25.0%
!!! TTTGGTTCCCTTTTTTTAAA+AGG - chr1_1:66579007-66579026 None:intergenic 25.0%
! CTTAAAAACCATGTTATCAA+GGG - chr1_1:66579194-66579213 None:intergenic 25.0%
! TCTTAAAAACCATGTTATCA+AGG - chr1_1:66579195-66579214 None:intergenic 25.0%
! TAGAGTTAGTTAAATCTTAG+CGG + chr1_1:66579812-66579831 Msa0037540:intron 25.0%
!! TGTCTGTTTATTCTGAAAAA+TGG + chr1_1:66580032-66580051 Msa0037540:intron 25.0%
!! GTCTGTTTATTCTGAAAAAT+GGG + chr1_1:66580033-66580052 Msa0037540:intron 25.0%
!! TCTGTTTATTCTGAAAAATG+GGG + chr1_1:66580034-66580053 Msa0037540:intron 25.0%
! TACATCACTACATTGAAATT+TGG - chr1_1:66580412-66580431 None:intergenic 25.0%
!!! TTAATTTGTGTGCATTCTTT+TGG + chr1_1:66580817-66580836 Msa0037540:intron 25.0%
!!! TAATTTGTGTGCATTCTTTT+GGG + chr1_1:66580818-66580837 Msa0037540:intron 25.0%
! TGAAAAAATTAAACCAACAG+AGG - chr1_1:66581138-66581157 None:intergenic 25.0%
!!! GTTGGTTTAATTTTTTCACA+AGG + chr1_1:66581140-66581159 Msa0037540:CDS 25.0%
!!! GTTTAATTTTTTCACAAGGT+GGG + chr1_1:66581144-66581163 Msa0037540:CDS 25.0%
! TAAGATGATTATGTTTAGAC+AGG + chr1_1:66581522-66581541 Msa0037540:three_prime_UTR 25.0%
! AAGATGATTATGTTTAGACA+GGG + chr1_1:66581523-66581542 Msa0037540:three_prime_UTR 25.0%
! TAGAATGATCTAGAATGTTC+TGG - chr1_1:66576853-66576872 None:intergenic 30.0%
!! GTACAAGTCCATTTTTGTTT+GGG - chr1_1:66576938-66576957 None:intergenic 30.0%
! CAAACAAAAATGGACTTGTA+CGG + chr1_1:66576937-66576956 Msa0037540:exon 30.0%
!!! AATTAGGGTTTTGATTTTGG+TGG + chr1_1:66577115-66577134 Msa0037540:intron 30.0%
TGTGCTTATTATATGAGAAC+CGG + chr1_1:66577222-66577241 Msa0037540:CDS 30.0%
AATGCAGATAACTAAAAACG+AGG - chr1_1:66577315-66577334 None:intergenic 30.0%
AGGAATAAAATTAACCATCC+AGG - chr1_1:66577399-66577418 None:intergenic 30.0%
! TCAGTGATATACATTTGCTA+AGG + chr1_1:66577515-66577534 Msa0037540:intron 30.0%
! CAGTGATATACATTTGCTAA+GGG + chr1_1:66577516-66577535 Msa0037540:intron 30.0%
! TAAGTGATGTACATTTGCTA+AGG + chr1_1:66577655-66577674 Msa0037540:intron 30.0%
! AAGTGATGTACATTTGCTAA+GGG + chr1_1:66577656-66577675 Msa0037540:intron 30.0%
! AACTGACTCAAATATTGTTC+AGG + chr1_1:66577692-66577711 Msa0037540:intron 30.0%
AAAACTGGAACCTGTAAATT+TGG + chr1_1:66577894-66577913 Msa0037540:CDS 30.0%
CATAAATATTTAGTGGAGCT+TGG - chr1_1:66577968-66577987 None:intergenic 30.0%
CAAGCTCCACTAAATATTTA+TGG + chr1_1:66577966-66577985 Msa0037540:CDS 30.0%
GGGTATCCATAAATATTTAG+TGG - chr1_1:66577975-66577994 None:intergenic 30.0%
!! CATGGATTTTGTTTAACACA+GGG + chr1_1:66578078-66578097 Msa0037540:intron 30.0%
GTGCTCCTATTATTTGAAAA+CGG + chr1_1:66578110-66578129 Msa0037540:CDS 30.0%
TGCTCCTATTATTTGAAAAC+GGG + chr1_1:66578111-66578130 Msa0037540:CDS 30.0%
! ATATGTGATCTGAAATATGG+CGG + chr1_1:66578416-66578435 Msa0037540:intron 30.0%
AATTGAGATACCATTCATAC+CGG - chr1_1:66578817-66578836 None:intergenic 30.0%
GTATGAATGGTATCTCAATT+TGG + chr1_1:66578817-66578836 Msa0037540:intron 30.0%
GTTTAGACTAACAACAGATT+TGG - chr1_1:66579025-66579044 None:intergenic 30.0%
GTTCTTCAATTTATGAGACT+AGG - chr1_1:66579413-66579432 None:intergenic 30.0%
AATGAAAGCGGAATAGATAT+GGG - chr1_1:66579456-66579475 None:intergenic 30.0%
AAATGAAAGCGGAATAGATA+TGG - chr1_1:66579457-66579476 None:intergenic 30.0%
CTCAGAATATCAAATGAAAG+CGG - chr1_1:66579468-66579487 None:intergenic 30.0%
!!! CTTGTGACTTTGTTTTAAGA+TGG + chr1_1:66579582-66579601 Msa0037540:intron 30.0%
GTTGTAATTCATGAAAGACA+TGG - chr1_1:66579755-66579774 None:intergenic 30.0%
! CTGTTTATTCTGAAAAATGG+GGG + chr1_1:66580035-66580054 Msa0037540:intron 30.0%
AAGGAAATAGATTGAATAGC+AGG - chr1_1:66580202-66580221 None:intergenic 30.0%
TTCTAAGTGTCTGTAAAACA+AGG + chr1_1:66580250-66580269 Msa0037540:intron 30.0%
TTTGAATGCTTCTTTATCTC+AGG + chr1_1:66580325-66580344 Msa0037540:intron 30.0%
! AATTAGGTTTTGCTAACCTT+GGG - chr1_1:66580354-66580373 None:intergenic 30.0%
! TTTGGAGTTGTAAACTGAAA+AGG - chr1_1:66580394-66580413 None:intergenic 30.0%
AAAGAATGGAAACTACGATA+CGG - chr1_1:66580458-66580477 None:intergenic 30.0%
AAGCACAACTTAAGAAAGAA+TGG - chr1_1:66580472-66580491 None:intergenic 30.0%
!!! TCGTAAGTAAATTTTGGTTG+CGG + chr1_1:66580567-66580586 Msa0037540:intron 30.0%
TCATACGCATCATAAATGAA+AGG - chr1_1:66580762-66580781 None:intergenic 30.0%
CTTCAACATCTTCAGAATTT+CGG + chr1_1:66581045-66581064 Msa0037540:CDS 30.0%
!!! GGTTTAATTTTTTCACAAGG+TGG + chr1_1:66581143-66581162 Msa0037540:CDS 30.0%
!! TTGGGTGACAAATTTTTCAA+TGG - chr1_1:66581374-66581393 None:intergenic 30.0%
CTTCATACTATTATGCTTTG+TGG + chr1_1:66581485-66581504 Msa0037540:three_prime_UTR 30.0%
GAGAGAGACAGAAAGAAAAT+GGG - chr1_1:66576781-66576800 None:intergenic 35.0%
!! TCTAGAATGTTCTGGAAGAT+CGG - chr1_1:66576845-66576864 None:intergenic 35.0%
GTGTTTACGAGAAAGGAAAA+TGG - chr1_1:66576892-66576911 None:intergenic 35.0%
!! CGTACAAGTCCATTTTTGTT+TGG - chr1_1:66576939-66576958 None:intergenic 35.0%
GTGCTTATTATATGAGAACC+GGG + chr1_1:66577223-66577242 Msa0037540:CDS 35.0%
!!! TAGTAGATGCTATTTTTGCC+TGG + chr1_1:66577378-66577397 Msa0037540:intron 35.0%
CAAAATTATACCTGACATGG+AGG - chr1_1:66577768-66577787 None:intergenic 35.0%
AAATTCCACCATCCCAAAAA+TGG + chr1_1:66577927-66577946 Msa0037540:CDS 35.0%
!! AAATATCCCCCTCCATTTTT+GGG - chr1_1:66577942-66577961 None:intergenic 35.0%
! TAAATATCCCCCTCCATTTT+TGG - chr1_1:66577943-66577962 None:intergenic 35.0%
AAGAAAAAGAAGAGTCGAAC+CGG - chr1_1:66578005-66578024 None:intergenic 35.0%
CCTGTGTTAAACAAAATCCA+TGG - chr1_1:66578080-66578099 None:intergenic 35.0%
!! CCATGGATTTTGTTTAACAC+AGG + chr1_1:66578077-66578096 Msa0037540:intron 35.0%
GCTCCTATTATTTGAAAACG+GGG + chr1_1:66578112-66578131 Msa0037540:CDS 35.0%
! TGCACCTCAATTTTATCAAC+AGG + chr1_1:66578203-66578222 Msa0037540:CDS 35.0%
! TGCACCTGTTGATAAAATTG+AGG - chr1_1:66578210-66578229 None:intergenic 35.0%
TATGTGTCTCTTACCGAATA+AGG - chr1_1:66578387-66578406 None:intergenic 35.0%
! AAAGTATTTCCTGAAAGACC+CGG + chr1_1:66578664-66578683 Msa0037540:CDS 35.0%
TGCCAATACTATATGAGAAC+TGG + chr1_1:66578697-66578716 Msa0037540:CDS 35.0%
GCCAATACTATATGAGAACT+GGG + chr1_1:66578698-66578717 Msa0037540:CDS 35.0%
CCAATACTATATGAGAACTG+GGG + chr1_1:66578699-66578718 Msa0037540:CDS 35.0%
ATTGAGATACCATTCATACC+GGG - chr1_1:66578816-66578835 None:intergenic 35.0%
ATGTATTCTATTCAGGAGTC+AGG + chr1_1:66578941-66578960 Msa0037540:intron 35.0%
! TTTTTGCAAAACTGCAGAGT+TGG + chr1_1:66579168-66579187 Msa0037540:intron 35.0%
AAGATTGTGATATTCCTCGT+AGG + chr1_1:66579211-66579230 Msa0037540:intron 35.0%
CATTTCAGTGGCAATCTATT+AGG - chr1_1:66579355-66579374 None:intergenic 35.0%
CTAATAGATTGCCACTGAAA+TGG + chr1_1:66579353-66579372 Msa0037540:intron 35.0%
ATGAAAGCGGAATAGATATG+GGG - chr1_1:66579455-66579474 None:intergenic 35.0%
AGCTAAGAAAAAGATTGGAG+GGG - chr1_1:66579504-66579523 None:intergenic 35.0%
GAGCTAAGAAAAAGATTGGA+GGG - chr1_1:66579505-66579524 None:intergenic 35.0%
GATGGAGCTAAGAAAAAGAT+TGG - chr1_1:66579509-66579528 None:intergenic 35.0%
! TTTTCTTAGCTCCATCATGT+CGG + chr1_1:66579513-66579532 Msa0037540:intron 35.0%
CAAAGCAAAGAAAACAGTGT+GGG - chr1_1:66579684-66579703 None:intergenic 35.0%
ACAAAGCAAAGAAAACAGTG+TGG - chr1_1:66579685-66579704 None:intergenic 35.0%
TCAAAATTGAGATCCTTCCT+AGG - chr1_1:66579921-66579940 None:intergenic 35.0%
ATTCCTTGATGGAACATGAT+TGG + chr1_1:66579953-66579972 Msa0037540:intron 35.0%
!! ATTGGCTTTCTGTATCTATC+CGG + chr1_1:66579971-66579990 Msa0037540:intron 35.0%
GGATACATGGATCAAACTTA+TGG + chr1_1:66580056-66580075 Msa0037540:intron 35.0%
GGATCAAACTTATGGTTACT+TGG + chr1_1:66580064-66580083 Msa0037540:intron 35.0%
TCATCCAATAACTTGAGCTT+AGG - chr1_1:66580133-66580152 None:intergenic 35.0%
ATTGGATGAATGCACATGAT+TGG + chr1_1:66580144-66580163 Msa0037540:intron 35.0%
! TAGCTTGTGAGTATCTTATG+TGG + chr1_1:66580294-66580313 Msa0037540:intron 35.0%
AGCTTGTGAGTATCTTATGT+GGG + chr1_1:66580295-66580314 Msa0037540:intron 35.0%
! GAATTAGGTTTTGCTAACCT+TGG - chr1_1:66580355-66580374 None:intergenic 35.0%
! TTCTTAAGTTGTGCTTTGCT+TGG + chr1_1:66580476-66580495 Msa0037540:intron 35.0%
TCAATAAGAGAAGATGCTGA+TGG - chr1_1:66580975-66580994 None:intergenic 35.0%
TAGATAGTAAAGACCCAACT+GGG - chr1_1:66581016-66581035 None:intergenic 35.0%
TTAGATAGTAAAGACCCAAC+TGG - chr1_1:66581017-66581036 None:intergenic 35.0%
! CGAAATTCTGAAGATGTTGA+AGG - chr1_1:66581047-66581066 None:intergenic 35.0%
ATTTCCAGATGAATGCATTC+TGG - chr1_1:66581105-66581124 None:intergenic 35.0%
AGAATGCATTCATCTGGAAA+TGG + chr1_1:66581104-66581123 Msa0037540:CDS 35.0%
ATGCTCCTCTCAGTATTTAA+TGG + chr1_1:66581325-66581344 Msa0037540:three_prime_UTR 35.0%
AGTTGCCATTAAATACTGAG+AGG - chr1_1:66581333-66581352 None:intergenic 35.0%
AAGCATAAAAGAGAATGACC+TGG - chr1_1:66581420-66581439 None:intergenic 35.0%
AAAGAGAGTTAGCGATTTAG+AGG + chr1_1:66581573-66581592 Msa0037540:three_prime_UTR 35.0%
AAGAGAGTTAGCGATTTAGA+GGG + chr1_1:66581574-66581593 Msa0037540:three_prime_UTR 35.0%
! TCTTTTTCTCTCTCTCTCTC+TGG - chr1_1:66576677-66576696 None:intergenic 40.0%
CGAGAGAGACAGAAAGAAAA+TGG - chr1_1:66576782-66576801 None:intergenic 40.0%
CTGTACAGTGTTTACGAGAA+AGG - chr1_1:66576899-66576918 None:intergenic 40.0%
CTTTCTCGTAAACACTGTAC+AGG + chr1_1:66576897-66576916 Msa0037540:five_prime_UTR 40.0%
! CAAAAATGGACTTGTACGGT+CGG + chr1_1:66576941-66576960 Msa0037540:exon 40.0%
! TTCATGTTGATTAAGCGGGT+TGG - chr1_1:66576986-66577005 None:intergenic 40.0%
ACCCGCTTAATCAACATGAA+TGG + chr1_1:66576986-66577005 Msa0037540:CDS 40.0%
! GCCATTCATGTTGATTAAGC+GGG - chr1_1:66576990-66577009 None:intergenic 40.0%
! CGCCATTCATGTTGATTAAG+CGG - chr1_1:66576991-66577010 None:intergenic 40.0%
GTTTATGTTCAGAGTCGATG+TGG + chr1_1:66577139-66577158 Msa0037540:intron 40.0%
TCGATGTGGCATTTATCACT+TGG + chr1_1:66577153-66577172 Msa0037540:CDS 40.0%
ATGTGGCATTTATCACTTGG+TGG + chr1_1:66577156-66577175 Msa0037540:CDS 40.0%
! TATATGAGAACCGGGTTTTG+TGG + chr1_1:66577231-66577250 Msa0037540:CDS 40.0%
!!! AGATGCTATTTTTGCCTGGA+TGG + chr1_1:66577382-66577401 Msa0037540:intron 40.0%
TTATGGATACCCATTACGAC+CGG + chr1_1:66577983-66578002 Msa0037540:CDS 40.0%
! CTGCCCCGTTTTCAAATAAT+AGG - chr1_1:66578118-66578137 None:intergenic 40.0%
TAAAATTGAGGTGCAGATGC+TGG - chr1_1:66578198-66578217 None:intergenic 40.0%
TTACCCGGTTCATATGTACA+AGG + chr1_1:66578306-66578325 Msa0037540:CDS 40.0%
TACCCGGTTCATATGTACAA+GGG + chr1_1:66578307-66578326 Msa0037540:CDS 40.0%
TCATATGTACAAGGGGCTTA+TGG + chr1_1:66578315-66578334 Msa0037540:CDS 40.0%
!! CTCATATAGTATTGGCAGAC+CGG - chr1_1:66578694-66578713 None:intergenic 40.0%
CCCCAGTTCTCATATAGTAT+TGG - chr1_1:66578702-66578721 None:intergenic 40.0%
AGAACTGGGGACTGTAAATT+TGG + chr1_1:66578712-66578731 Msa0037540:CDS 40.0%
GTGCGTACATGTATTATGTG+TGG + chr1_1:66579241-66579260 Msa0037540:intron 40.0%
ACCAGGTTAGTGTGTATACT+TGG - chr1_1:66579306-66579325 None:intergenic 40.0%
GTATACACACTAACCTGGTT+TGG + chr1_1:66579307-66579326 Msa0037540:intron 40.0%
ATAGATTGCCACTGAAATGG+CGG + chr1_1:66579356-66579375 Msa0037540:intron 40.0%
! AAAGTTTTCCGCCATTTCAG+TGG - chr1_1:66579367-66579386 None:intergenic 40.0%
ATTGAAGAACCCCATCCTTA+TGG + chr1_1:66579423-66579442 Msa0037540:intron 40.0%
GGAGCTAAGAAAAAGATTGG+AGG - chr1_1:66579506-66579525 None:intergenic 40.0%
AAGATGAAACACCCACAAAG+GGG - chr1_1:66579565-66579584 None:intergenic 40.0%
CAAGATGAAACACCCACAAA+GGG - chr1_1:66579566-66579585 None:intergenic 40.0%
ACAAGATGAAACACCCACAA+AGG - chr1_1:66579567-66579586 None:intergenic 40.0%
TGAACTCAACACCGTATCTT+TGG + chr1_1:66579606-66579625 Msa0037540:intron 40.0%
ATGGGTCTTGACCAAAGATA+CGG - chr1_1:66579620-66579639 None:intergenic 40.0%
ATCTTTGGTCAAGACCCATA+AGG + chr1_1:66579621-66579640 Msa0037540:intron 40.0%
GAGAAACAGGTAGTCCTTAT+GGG - chr1_1:66579638-66579657 None:intergenic 40.0%
TGAGAAACAGGTAGTCCTTA+TGG - chr1_1:66579639-66579658 None:intergenic 40.0%
! ACTACCTGTTTCTCACTGTT+GGG + chr1_1:66579644-66579663 Msa0037540:intron 40.0%
TTCTCTTCCCAATTGATCCT+AGG + chr1_1:66579901-66579920 Msa0037540:intron 40.0%
GATCCTTCCTAGGATCAATT+GGG - chr1_1:66579911-66579930 None:intergenic 40.0%
AGATCCTTCCTAGGATCAAT+TGG - chr1_1:66579912-66579931 None:intergenic 40.0%
AACCTTGCTTGATTCCTTGA+TGG + chr1_1:66579942-66579961 Msa0037540:intron 40.0%
TTCCATCAAGGAATCAAGCA+AGG - chr1_1:66579947-66579966 None:intergenic 40.0%
AAGCCAATCATGTTCCATCA+AGG - chr1_1:66579959-66579978 None:intergenic 40.0%
!! AGACCCAAGCTTTTGTTTGA+GGG - chr1_1:66579999-66580018 None:intergenic 40.0%
TCTGAAAAATGGGGGATACA+TGG + chr1_1:66580043-66580062 Msa0037540:intron 40.0%
TAACTTGAGCTTAGGAGAGT+TGG - chr1_1:66580125-66580144 None:intergenic 40.0%
CTCTCCTAAGCTCAAGTTAT+TGG + chr1_1:66580126-66580145 Msa0037540:intron 40.0%
TCTTTATCTCAGGAAACCCA+AGG + chr1_1:66580335-66580354 Msa0037540:intron 40.0%
TAAGTTGTGCTTTGCTTGGT+TGG + chr1_1:66580480-66580499 Msa0037540:intron 40.0%
ATCAAAAGTCCCCTGTAAGA+GGG - chr1_1:66580606-66580625 None:intergenic 40.0%
ATGCAAGTTTGATCATCCTG+CGG + chr1_1:66580932-66580951 Msa0037540:CDS 40.0%
TGGGTCTTTACTATCTAACC+TGG + chr1_1:66581019-66581038 Msa0037540:CDS 40.0%
! CATTCTGGCTGAAAAGGAAT+TGG - chr1_1:66581090-66581109 None:intergenic 40.0%
! TGAATGCATTCTGGCTGAAA+AGG - chr1_1:66581096-66581115 None:intergenic 40.0%
CATTCATCTGGAAATGGTTC+TGG + chr1_1:66581110-66581129 Msa0037540:CDS 40.0%
CAGAGTTCTGCTTCTTTGAA+CGG + chr1_1:66581200-66581219 Msa0037540:CDS 40.0%
AGCACACAAGAATCACGATT+GGG - chr1_1:66581392-66581411 None:intergenic 40.0%
TAGCACACAAGAATCACGAT+TGG - chr1_1:66581393-66581412 None:intergenic 40.0%
ATTCTTGTGTGCTATACACC+AGG + chr1_1:66581399-66581418 Msa0037540:three_prime_UTR 40.0%
TATGCTTTGTGGACTTATGC+TGG + chr1_1:66581496-66581515 Msa0037540:three_prime_UTR 40.0%
TTTCTTCCTGCTCTGTACAA+AGG + chr1_1:66581549-66581568 Msa0037540:three_prime_UTR 40.0%
TCTTTACCTTTGTACAGAGC+AGG - chr1_1:66581558-66581577 None:intergenic 40.0%
! CTCTCTCTCTGGAAACTGTA+CGG - chr1_1:66576666-66576685 None:intergenic 45.0%
! TGGCATTTATCACTTGGTGG+TGG + chr1_1:66577159-66577178 Msa0037540:CDS 45.0%
!! CATTTATCACTTGGTGGTGG+TGG + chr1_1:66577162-66577181 Msa0037540:CDS 45.0%
! TGGTGGTGTTGAATCTTACC+CGG + chr1_1:66577179-66577198 Msa0037540:CDS 45.0%
!! AGAACCGGGTTTTGTGGATA+TGG + chr1_1:66577237-66577256 Msa0037540:CDS 45.0%
TCCACCATATCCACAAAACC+CGG - chr1_1:66577244-66577263 None:intergenic 45.0%
!! GGTTTTGTGGATATGGTGGA+AGG + chr1_1:66577244-66577263 Msa0037540:CDS 45.0%
ACAAGACGCGCCAAATTTAC+AGG - chr1_1:66577907-66577926 None:intergenic 45.0%
TTCCACCATCCCAAAAATGG+AGG + chr1_1:66577930-66577949 Msa0037540:CDS 45.0%
TCCACCATCCCAAAAATGGA+GGG + chr1_1:66577931-66577950 Msa0037540:CDS 45.0%
AAAACGGGGCAGTGCAAATT+TGG + chr1_1:66578126-66578145 Msa0037540:CDS 45.0%
ACATATGAACCGGGTAACAC+AGG - chr1_1:66578303-66578322 None:intergenic 45.0%
ACCCGGTTCATATGTACAAG+GGG + chr1_1:66578308-66578327 Msa0037540:CDS 45.0%
AGCCCCTTGTACATATGAAC+CGG - chr1_1:66578313-66578332 None:intergenic 45.0%
TAAGGACTCCATCCAGGAAA+TGG - chr1_1:66578369-66578388 None:intergenic 45.0%
TCCTGGATGGAGTCCTTATT+CGG + chr1_1:66578371-66578390 Msa0037540:CDS 45.0%
GTTGGGGCTACTTCTCTTTA+CGG + chr1_1:66578547-66578566 Msa0037540:CDS 45.0%
CCTGTCGATATCATCATCCA+CGG + chr1_1:66578740-66578759 Msa0037540:CDS 45.0%
CTGTCGATATCATCATCCAC+GGG + chr1_1:66578741-66578760 Msa0037540:CDS 45.0%
AGACCAAAGGGACTAAGAAG+TGG - chr1_1:66578784-66578803 None:intergenic 45.0%
AACAAGTTAGACACCAGGCA+GGG - chr1_1:66579080-66579099 None:intergenic 45.0%
! AGAGTTGGCCCTTGATAACA+TGG + chr1_1:66579183-66579202 Msa0037540:intron 45.0%
GCCAAGTATACACACTAACC+TGG + chr1_1:66579302-66579321 Msa0037540:intron 45.0%
TACAGCAATCTCACCAAACC+AGG - chr1_1:66579323-66579342 None:intergenic 45.0%
!! TGGTTTGGTGAGATTGCTGT+AGG + chr1_1:66579322-66579341 Msa0037540:intron 45.0%
GATATGGGGAAACAGCCATA+AGG - chr1_1:66579441-66579460 None:intergenic 45.0%
! TTTTAGCACCACCGACATGA+TGG - chr1_1:66579527-66579546 None:intergenic 45.0%
! GTGGTGCTAAAACTCTGCAT+TGG + chr1_1:66579535-66579554 Msa0037540:intron 45.0%
! GACTACCTGTTTCTCACTGT+TGG + chr1_1:66579643-66579662 Msa0037540:intron 45.0%
AGTTCCCAACAGTGAGAAAC+AGG - chr1_1:66579651-66579670 None:intergenic 45.0%
GTTTCTCACTGTTGGGAACT+TGG + chr1_1:66579651-66579670 Msa0037540:intron 45.0%
CTTCCCAATTGATCCTAGGA+AGG + chr1_1:66579905-66579924 Msa0037540:intron 45.0%
!! AAGCTTTTGTTTGAGGGAGC+CGG - chr1_1:66579993-66580012 None:intergenic 45.0%
GCTCCCTCAAACAAAAGCTT+GGG + chr1_1:66579993-66580012 Msa0037540:intron 45.0%
!! CAGACCCAAGCTTTTGTTTG+AGG - chr1_1:66580000-66580019 None:intergenic 45.0%
GAAGCCATGATACCATGTCA+AGG + chr1_1:66580098-66580117 Msa0037540:intron 45.0%
TGGTCCTTGACATGGTATCA+TGG - chr1_1:66580105-66580124 None:intergenic 45.0%
!! TTGGTGTCATAGCATGGTTG+AGG + chr1_1:66580499-66580518 Msa0037540:intron 45.0%
!! TGGTGTCATAGCATGGTTGA+GGG + chr1_1:66580500-66580519 Msa0037540:intron 45.0%
GGTTGAGGGGATATGAAACA+TGG + chr1_1:66580514-66580533 Msa0037540:intron 45.0%
TGGCTACAACAAAAGCGATG+TGG + chr1_1:66580534-66580553 Msa0037540:intron 45.0%
!! ATCGTTTTTGCCCCTCTTAC+AGG + chr1_1:66580592-66580611 Msa0037540:intron 45.0%
!! TCGTTTTTGCCCCTCTTACA+GGG + chr1_1:66580593-66580612 Msa0037540:intron 45.0%
TCAAAAGTCCCCTGTAAGAG+GGG - chr1_1:66580605-66580624 None:intergenic 45.0%
CATCAAAAGTCCCCTGTAAG+AGG - chr1_1:66580607-66580626 None:intergenic 45.0%
! CTCTTACAGGGGACTTTTGA+TGG + chr1_1:66580605-66580624 Msa0037540:intron 45.0%
! CAAAATGGGCACTGCAAGTT+TGG + chr1_1:66580903-66580922 Msa0037540:CDS 45.0%
TGCAAGTTTGATCATCCTGC+GGG + chr1_1:66580933-66580952 Msa0037540:CDS 45.0%
AGTAAAGACCCAACTGGGTA+TGG - chr1_1:66581011-66581030 None:intergenic 45.0%
CTGAAGATGTTGAAGGAACC+AGG - chr1_1:66581040-66581059 None:intergenic 45.0%
TTGGATCCTGACTTCAGTTC+AGG - chr1_1:66581071-66581090 None:intergenic 45.0%
TCAGCCAGAATGCATTCATC+TGG + chr1_1:66581098-66581117 Msa0037540:CDS 45.0%
!! AATGGTTCTGGTACCTCTGT+TGG + chr1_1:66581122-66581141 Msa0037540:CDS 45.0%
CGTTCAAAGAAGCAGAACTC+TGG - chr1_1:66581202-66581221 None:intergenic 45.0%
AGCATGAACAGAAGCAATGG+TGG - chr1_1:66581310-66581329 None:intergenic 45.0%
! AGGAGCATGAACAGAAGCAA+TGG - chr1_1:66581313-66581332 None:intergenic 45.0%
!!! ATTTTGTAATTTATTAATTA+GGG + chr1_1:66577100-66577119 Msa0037540:intron 5.0%
!! TATATTTACTATTTAATAAA+AGG + chr1_1:66577828-66577847 Msa0037540:intron 5.0%
!! ATATTTACTATTTAATAAAA+GGG + chr1_1:66577829-66577848 Msa0037540:intron 5.0%
CACACGAACGAGAGAACACA+AGG + chr1_1:66576737-66576756 Msa0037540:five_prime_UTR 50.0%
!! GGTTGGATCCGTTTCTAGTG+GGG - chr1_1:66576969-66576988 None:intergenic 50.0%
!! GGGTTGGATCCGTTTCTAGT+GGG - chr1_1:66576970-66576989 None:intergenic 50.0%
GAATCTTACCCGGAGAGACA+TGG + chr1_1:66577189-66577208 Msa0037540:CDS 50.0%
TTCGGTACACCATGTCTCTC+CGG - chr1_1:66577201-66577220 None:intergenic 50.0%
!! ACCGGGTTTTGTGGATATGG+TGG + chr1_1:66577240-66577259 Msa0037540:CDS 50.0%
GATCACGCGGGTGATTGAAA+CGG - chr1_1:66577272-66577291 None:intergenic 50.0%
CTGCTGCAGTAAGAGCTACA+GGG + chr1_1:66577718-66577737 Msa0037540:CDS 50.0%
TGCTGCAGTAAGAGCTACAG+GGG + chr1_1:66577719-66577738 Msa0037540:CDS 50.0%
CCACCATCCCAAAAATGGAG+GGG + chr1_1:66577932-66577951 Msa0037540:CDS 50.0%
CACCATCCCAAAAATGGAGG+GGG + chr1_1:66577933-66577952 Msa0037540:CDS 50.0%
!! ATCCCCCTCCATTTTTGGGA+TGG - chr1_1:66577938-66577957 None:intergenic 50.0%
AGAGTCGAACCGGTCGTAAT+GGG - chr1_1:66577995-66578014 None:intergenic 50.0%
AAGAGTCGAACCGGTCGTAA+TGG - chr1_1:66577996-66578015 None:intergenic 50.0%
! AATGAAGTGCCAGCAGGTTG+AGG - chr1_1:66578174-66578193 None:intergenic 50.0%
TCAACAGGTGCAGTCTCCAA+CGG + chr1_1:66578218-66578237 Msa0037540:CDS 50.0%
GAAGCTCCTCCAAACTGTTC+CGG - chr1_1:66578255-66578274 None:intergenic 50.0%
AGCTTCTGCAAGTGTGAGAG+TGG + chr1_1:66578269-66578288 Msa0037540:CDS 50.0%
TATGAACCGGGTAACACAGG+AGG - chr1_1:66578300-66578319 None:intergenic 50.0%
GCCCCTTGTACATATGAACC+GGG - chr1_1:66578312-66578331 None:intergenic 50.0%
AGGAAATGGAACAACCCCTG+GGG - chr1_1:66578355-66578374 None:intergenic 50.0%
CAGGAAATGGAACAACCCCT+GGG - chr1_1:66578356-66578375 None:intergenic 50.0%
GGGTTGTTCCATTTCCTGGA+TGG + chr1_1:66578358-66578377 Msa0037540:CDS 50.0%
ACCGAATAAGGACTCCATCC+AGG - chr1_1:66578375-66578394 None:intergenic 50.0%
GGAGATAACACAGGGCTTAC+AGG - chr1_1:66578511-66578530 None:intergenic 50.0%
GTAAGCCCTGTGTTATCTCC+TGG + chr1_1:66578511-66578530 Msa0037540:CDS 50.0%
! GAAGAGGGCAGAGGAGTATA+AGG - chr1_1:66578613-66578632 None:intergenic 50.0%
CCTGAAGTGTGTTTCCTCCA+GGG - chr1_1:66578642-66578661 None:intergenic 50.0%
TCCTGAAGTGTGTTTCCTCC+AGG - chr1_1:66578643-66578662 None:intergenic 50.0%
CCGTGGATGATGATATCGAC+AGG - chr1_1:66578743-66578762 None:intergenic 50.0%
ATATCATCATCCACGGGACC+AGG + chr1_1:66578747-66578766 Msa0037540:CDS 50.0%
CGACCACTTCTTAGTCCCTT+TGG + chr1_1:66578778-66578797 Msa0037540:CDS 50.0%
TTAAGACCAATGTCCCTGCC+TGG + chr1_1:66579064-66579083 Msa0037540:intron 50.0%
CAACAAGTTAGACACCAGGC+AGG - chr1_1:66579081-66579100 None:intergenic 50.0%
CAGGCAACAAGTTAGACACC+AGG - chr1_1:66579085-66579104 None:intergenic 50.0%
AATGCAACTAAAGCCAGCGC+AGG - chr1_1:66579104-66579123 None:intergenic 50.0%
!! TGCGCTGGCTTTAGTTGCAT+TGG + chr1_1:66579103-66579122 Msa0037540:intron 50.0%
!! GCGCTGGCTTTAGTTGCATT+GGG + chr1_1:66579104-66579123 Msa0037540:intron 50.0%
!! CGCTGGCTTTAGTTGCATTG+GGG + chr1_1:66579105-66579124 Msa0037540:intron 50.0%
TACGCACGAGTAATCCTACG+AGG - chr1_1:66579228-66579247 None:intergenic 50.0%
GGGAAACAGCCATAAGGATG+GGG - chr1_1:66579435-66579454 None:intergenic 50.0%
GGGGAAACAGCCATAAGGAT+GGG - chr1_1:66579436-66579455 None:intergenic 50.0%
TGGGGAAACAGCCATAAGGA+TGG - chr1_1:66579437-66579456 None:intergenic 50.0%
TCTTAGCTCCATCATGTCGG+TGG + chr1_1:66579516-66579535 Msa0037540:intron 50.0%
TGCATTGGAGTTCCCCTTTG+TGG + chr1_1:66579550-66579569 Msa0037540:intron 50.0%
GCATTGGAGTTCCCCTTTGT+GGG + chr1_1:66579551-66579570 Msa0037540:intron 50.0%
GGCTCCCTCAAACAAAAGCT+TGG + chr1_1:66579992-66580011 Msa0037540:intron 50.0%
! AGGAGAGTTGGTCCTTGACA+TGG - chr1_1:66580113-66580132 None:intergenic 50.0%
!! GCTTGGTTGGTGTCATAGCA+TGG + chr1_1:66580493-66580512 Msa0037540:intron 50.0%
! GGTGTCATAGCATGGTTGAG+GGG + chr1_1:66580501-66580520 Msa0037540:intron 50.0%
! CGTTTTTGCCCCTCTTACAG+GGG + chr1_1:66580594-66580613 Msa0037540:intron 50.0%
GCAAGTTTGATCATCCTGCG+GGG + chr1_1:66580934-66580953 Msa0037540:CDS 50.0%
CAGTTGCTCCATACCCAGTT+GGG + chr1_1:66581000-66581019 Msa0037540:CDS 50.0%
TTTCGGCCTGAACTGAAGTC+AGG + chr1_1:66581062-66581081 Msa0037540:CDS 50.0%
! CTCGACTCGACGAGGAAGTT+AGG + chr1_1:66576798-66576817 Msa0037540:five_prime_UTR 55.0%
! CGGGTTGGATCCGTTTCTAG+TGG - chr1_1:66576971-66576990 None:intergenic 55.0%
AGAGCAGTAGCATCAGCAGC+AGG - chr1_1:66577018-66577037 None:intergenic 55.0%
GCTGCTGATGCTACTGCTCT+TGG + chr1_1:66577018-66577037 Msa0037540:CDS 55.0%
GCTGATGCTACTGCTCTTGG+AGG + chr1_1:66577021-66577040 Msa0037540:CDS 55.0%
TCGGTACACCATGTCTCTCC+GGG - chr1_1:66577200-66577219 None:intergenic 55.0%
ATTACCGCAGCACGATCACG+CGG - chr1_1:66577285-66577304 None:intergenic 55.0%
GCTGCTGCAGTAAGAGCTAC+AGG + chr1_1:66577717-66577736 Msa0037540:CDS 55.0%
AAGAGCTACAGGGGACTACC+CGG + chr1_1:66577728-66577747 Msa0037540:CDS 55.0%
!!! CCCCTCCATTTTTGGGATGG+TGG - chr1_1:66577935-66577954 None:intergenic 55.0%
TTCCACCATCCTCAACCTGC+TGG + chr1_1:66578162-66578181 Msa0037540:CDS 55.0%
! AAGTGCCAGCAGGTTGAGGA+TGG - chr1_1:66578170-66578189 None:intergenic 55.0%
GCTAGACCTCCTGTGTTACC+CGG + chr1_1:66578291-66578310 Msa0037540:CDS 55.0%
AACCCCTGGGGAAAGAAGCA+CGG - chr1_1:66578343-66578362 None:intergenic 55.0%
CCAGGAAATGGAACAACCCC+TGG - chr1_1:66578357-66578376 None:intergenic 55.0%
CCAGGGGTTGTTCCATTTCC+TGG + chr1_1:66578354-66578373 Msa0037540:CDS 55.0%
AGAGAAGTAGCCCCAACAGC+AGG - chr1_1:66578544-66578563 None:intergenic 55.0%
CCCTGGAGGAAACACACTTC+AGG + chr1_1:66578639-66578658 Msa0037540:CDS 55.0%
TCCTGAAAGACCCGGTGAAC+CGG + chr1_1:66578672-66578691 Msa0037540:CDS 55.0%
! TATTGGCAGACCGGTTCACC+GGG - chr1_1:66578685-66578704 None:intergenic 55.0%
! GTATTGGCAGACCGGTTCAC+CGG - chr1_1:66578686-66578705 None:intergenic 55.0%
GGGCGTAGAGGAAGACCAAA+GGG - chr1_1:66578796-66578815 None:intergenic 55.0%
! CTTTGGTCTTCCTCTACGCC+CGG + chr1_1:66578795-66578814 Msa0037540:CDS 55.0%
TCCTCTACGCCCGGTATGAA+TGG + chr1_1:66578804-66578823 Msa0037540:intron 55.0%
ACCATTCATACCGGGCGTAG+AGG - chr1_1:66578808-66578827 None:intergenic 55.0%
TAGACACCAGGCAGGGACAT+TGG - chr1_1:66579073-66579092 None:intergenic 55.0%
!! GTCTAACTTGTTGCCTGCGC+TGG + chr1_1:66579088-66579107 Msa0037540:intron 55.0%
CTGTATCTCATTGACCCCGC+AGG - chr1_1:66580951-66580970 None:intergenic 55.0%
CCAACTGGGTATGGAGCAAC+TGG - chr1_1:66581002-66581021 None:intergenic 55.0%
CCAGTTGCTCCATACCCAGT+TGG + chr1_1:66580999-66581018 Msa0037540:CDS 55.0%
AGCAGAAGCAGCAGACAGAG+TGG + chr1_1:66581224-66581243 Msa0037540:CDS 55.0%
! CTGTCTCTCTCGACTCGACG+AGG + chr1_1:66576790-66576809 Msa0037540:five_prime_UTR 60.0%
GGTCGGAGCCCCACTAGAAA+CGG + chr1_1:66576958-66576977 Msa0037540:CDS 60.0%
TTACCGCAGCACGATCACGC+GGG - chr1_1:66577284-66577303 None:intergenic 60.0%
GCTTGGCGAACCTCCATGTC+AGG + chr1_1:66577755-66577774 Msa0037540:CDS 60.0%
! TGCCAGCAGGTTGAGGATGG+TGG - chr1_1:66578167-66578186 None:intergenic 60.0%
! GCTGGCAATGAAGTGCCAGC+AGG - chr1_1:66578180-66578199 None:intergenic 60.0%
TCCAACGGTTCCTCCTCTGC+CGG + chr1_1:66578233-66578252 Msa0037540:CDS 60.0%
CCAAACTGTTCCGGCAGAGG+AGG - chr1_1:66578246-66578265 None:intergenic 60.0%
CCTCCTCTGCCGGAACAGTT+TGG + chr1_1:66578243-66578262 Msa0037540:CDS 60.0%
CCTCCAAACTGTTCCGGCAG+AGG - chr1_1:66578249-66578268 None:intergenic 60.0%
CCTCTGCCGGAACAGTTTGG+AGG + chr1_1:66578246-66578265 Msa0037540:CDS 60.0%
GTCCCGTGCTTCTTTCCCCA+GGG + chr1_1:66578337-66578356 Msa0037540:CDS 60.0%
TCCCGTGCTTCTTTCCCCAG+GGG + chr1_1:66578338-66578357 Msa0037540:CDS 60.0%
! ACCCCTGGGGAAAGAAGCAC+GGG - chr1_1:66578342-66578361 None:intergenic 60.0%
GCGCGCCAGGAGATAACACA+GGG - chr1_1:66578519-66578538 None:intergenic 60.0%
TGCGCGCCAGGAGATAACAC+AGG - chr1_1:66578520-66578539 None:intergenic 60.0%
ACTCCTCTGCCCTCTTCTCC+TGG + chr1_1:66578616-66578635 Msa0037540:CDS 60.0%
AGTGTGTTTCCTCCAGGGCC+AGG - chr1_1:66578637-66578656 None:intergenic 60.0%
! ACCGGTTCACCGGGTCTTTC+AGG - chr1_1:66578676-66578695 None:intergenic 60.0%
GAAGTGGTCGTGCAGCAACC+TGG - chr1_1:66578768-66578787 None:intergenic 60.0%
CGGGCGTAGAGGAAGACCAA+AGG - chr1_1:66578797-66578816 None:intergenic 60.0%
GGTGGGTCTGTCTCACTGTC+TGG + chr1_1:66581161-66581180 Msa0037540:CDS 60.0%
TCACCCGCGTGATCGTGCTG+CGG + chr1_1:66577278-66577297 Msa0037540:CDS 65.0%
CTACAGGGGACTACCCGGAG+AGG + chr1_1:66577733-66577752 Msa0037540:CDS 65.0%
GAGGTTCGCCAAGCCTCTCC+GGG - chr1_1:66577749-66577768 None:intergenic 65.0%
GGAGGTTCGCCAAGCCTCTC+CGG - chr1_1:66577750-66577769 None:intergenic 65.0%
TCCGGCAGAGGAGGAACCGT+TGG - chr1_1:66578237-66578256 None:intergenic 65.0%
GGTCCCGTGCTTCTTTCCCC+AGG + chr1_1:66578336-66578355 Msa0037540:CDS 65.0%
CTGGCGCGCAACCTGCTGTT+GGG + chr1_1:66578530-66578549 Msa0037540:CDS 65.0%
TGGCGCGCAACCTGCTGTTG+GGG + chr1_1:66578531-66578550 Msa0037540:CDS 65.0%
CCTCCAGGGCCAGGAGAAGA+GGG - chr1_1:66578628-66578647 None:intergenic 65.0%
TCCTCCAGGGCCAGGAGAAG+AGG - chr1_1:66578629-66578648 None:intergenic 65.0%
GGGGACTACCCGGAGAGGCT+TGG + chr1_1:66577738-66577757 Msa0037540:CDS 70.0%
CCAACAGCAGGTTGCGCGCC+AGG - chr1_1:66578532-66578551 None:intergenic 70.0%
CCTGGCGCGCAACCTGCTGT+TGG + chr1_1:66578529-66578548 Msa0037540:CDS 70.0%
GGGCCAGGAGAAGAGGGCAG+AGG - chr1_1:66578622-66578641 None:intergenic 70.0%
CTGCCCTCTTCTCCTGGCCC+TGG + chr1_1:66578622-66578641 Msa0037540:CDS 70.0%
CCCTCTTCTCCTGGCCCTGG+AGG + chr1_1:66578625-66578644 Msa0037540:CDS 70.0%
CGTGCAGCAACCTGGTCCCG+TGG - chr1_1:66578760-66578779 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 66576637 66581614 66576637 ID=Msa0037540;Name=Msa0037540
chr1_1 mRNA 66576637 66581614 66576637 ID=Msa0037540-mRNA-1;Parent=Msa0037540;Name=Msa0037540-mRNA-1;_AED=0.20;_eAED=0.20;_QI=287|1|1|1|0.57|0.62|8|355|472
chr1_1 exon 66576637 66576709 66576637 ID=Msa0037540-mRNA-1:exon:21509;Parent=Msa0037540-mRNA-1
chr1_1 exon 66576732 66577042 66576732 ID=Msa0037540-mRNA-1:exon:21510;Parent=Msa0037540-mRNA-1
chr1_1 exon 66577151 66577299 66577151 ID=Msa0037540-mRNA-1:exon:21511;Parent=Msa0037540-mRNA-1
chr1_1 exon 66577714 66577776 66577714 ID=Msa0037540-mRNA-1:exon:21512;Parent=Msa0037540-mRNA-1
chr1_1 exon 66577885 66578004 66577885 ID=Msa0037540-mRNA-1:exon:21513;Parent=Msa0037540-mRNA-1
chr1_1 exon 66578099 66578392 66578099 ID=Msa0037540-mRNA-1:exon:21514;Parent=Msa0037540-mRNA-1
chr1_1 exon 66578505 66578816 66578505 ID=Msa0037540-mRNA-1:exon:21515;Parent=Msa0037540-mRNA-1
chr1_1 exon 66580876 66581614 66580876 ID=Msa0037540-mRNA-1:exon:21516;Parent=Msa0037540-mRNA-1
chr1_1 five_prime_UTR 66576637 66576709 66576637 ID=Msa0037540-mRNA-1:five_prime_utr;Parent=Msa0037540-mRNA-1
chr1_1 five_prime_UTR 66576732 66576945 66576732 ID=Msa0037540-mRNA-1:five_prime_utr;Parent=Msa0037540-mRNA-1
chr1_1 CDS 66576946 66577042 66576946 ID=Msa0037540-mRNA-1:cds;Parent=Msa0037540-mRNA-1
chr1_1 CDS 66577151 66577299 66577151 ID=Msa0037540-mRNA-1:cds;Parent=Msa0037540-mRNA-1
chr1_1 CDS 66577714 66577776 66577714 ID=Msa0037540-mRNA-1:cds;Parent=Msa0037540-mRNA-1
chr1_1 CDS 66577885 66578004 66577885 ID=Msa0037540-mRNA-1:cds;Parent=Msa0037540-mRNA-1
chr1_1 CDS 66578099 66578392 66578099 ID=Msa0037540-mRNA-1:cds;Parent=Msa0037540-mRNA-1
chr1_1 CDS 66578505 66578816 66578505 ID=Msa0037540-mRNA-1:cds;Parent=Msa0037540-mRNA-1
chr1_1 CDS 66580876 66581259 66580876 ID=Msa0037540-mRNA-1:cds;Parent=Msa0037540-mRNA-1
chr1_1 three_prime_UTR 66581260 66581614 66581260 ID=Msa0037540-mRNA-1:three_prime_utr;Parent=Msa0037540-mRNA-1
Gene Sequence

>Msa0037540

ATGGACTTGTACGGTCGGAGCCCCACTAGAAACGGATCCAACCCGCTTAATCAACATGAATGGCGTTCACCTGCTGCTGATGCTACTGCTCTTGGAGAGTCGATGTGGCATTTATCACTTGGTGGTGGTGGTGTTGAATCTTACCCGGAGAGACATGGTGTACCGAATTGTGCTTATTATATGAGAACCGGGTTTTGTGGATATGGTGGAAGGTGCCGTTTCAATCACCCGCGTGATCGTGCTGCGGTTGCTGCTGCAGTAAGAGCTACAGGGGACTACCCGGAGAGGCTTGGCGAACCTCCATGTCAGTATTATTTAAAAACTGGAACCTGTAAATTTGGCGCGTCTTGTAAATTCCACCATCCCAAAAATGGAGGGGGATATTTAAGCCAAGCTCCACTAAATATTTATGGATACCCATTACGACCGGGCGAGAGTGAGTGCTCCTATTATTTGAAAACGGGGCAGTGCAAATTTGGCGTAACTTGTAAATTCCACCATCCTCAACCTGCTGGCACTTCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCAACGGTTCCTCCTCTGCCGGAACAGTTTGGAGGAGCTTCTGCAAGTGTGAGAGTGGCTAGACCTCCTGTGTTACCCGGTTCATATGTACAAGGGGCTTATGGTCCCGTGCTTCTTTCCCCAGGGGTTGTTCCATTTCCTGGATGGAGTCCTTATTCGGCACCTGTAAGCCCTGTGTTATCTCCTGGCGCGCAACCTGCTGTTGGGGCTACTTCTCTTTACGGAGTAACTCAGTTGTCGTCATCAACATCAGCTTTTGCTAGACCTTATACTCCTCTGCCCTCTTCTCCTGGCCCTGGAGGAAACACACTTCAGGAAAAAGTATTTCCTGAAAGACCCGGTGAACCGGTCTGCCAATACTATATGAGAACTGGGGACTGTAAATTTGGATTAGCCTGTCGATATCATCATCCACGGGACCAGGTTGCTGCACGACCACTTCTTAGTCCCTTTGGTCTTCCTCTACGCCCGGGTGTACAGCCTTGTTCATTTTATATACAAAATGGGCACTGCAAGTTTGGCTCGACATGCAAGTTTGATCATCCTGCGGGGTCAATGAGATACAGTCCATCAGCATCTTCTCTTATTGATGTTCCAGTTGCTCCATACCCAGTTGGGTCTTTACTATCTAACCTGGTTCCTTCAACATCTTCAGAATTTCGGCCTGAACTGAAGTCAGGATCCAATTCCTTTTCAGCCAGAATGCATTCATCTGGAAATGGTTCTGGTACCTCTGTTGGTTTAATTTTTTCACAAGGTGGGTCTGTCTCACTGTCTGGTGCGCAACTCTCAAGCCAGAGTTCTGCTTCTTTGAACGGTAGCAGAAGCAGCAGACAGAGTGGTGAGATACATTGA
Protein sequence

>Msa0037540

MDLYGRSPTRNGSNPLNQHEWRSPAADATALGESMWHLSLGGGGVESYPERHGVPNCAYYMRTGFCGYGGRCRFNHPRDRAAVAAAVRATGDYPERLGEPPCQYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNIYGYPLRPGESECSYYLKTGQCKFGVTCKFHHPQPAGTSLPASAPQFYQQVQSPTVPPLPEQFGGASASVRVARPPVLPGSYVQGAYGPVLLSPGVVPFPGWSPYSAPVSPVLSPGAQPAVGATSLYGVTQLSSSTSAFARPYTPLPSSPGPGGNTLQEKVFPERPGEPVCQYYMRTGDCKFGLACRYHHPRDQVAARPLLSPFGLPLRPGVQPCSFYIQNGHCKFGSTCKFDHPAGSMRYSPSASSLIDVPVAPYPVGSLLSNLVPSTSSEFRPELKSGSNSFSARMHSSGNGSGTSVGLIFSQGGSVSLSGAQLSSQSSASLNGSRSSRQSGEIH*