AlfalfaGEDB | Msa0037540

M. sativa cultivar zhongmu-4 / Msa0037540

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00642.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0037540	XP_024639704.1	98.097	473	5	2	1	472	1	470	0.0	924

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0037540	sp\|Q84W91\|C3H32_ARATH	64.990	477	148	9	3	472	1	465	0.0	573

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0037540	TF	C3H

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003640	Msa0037540	-0.804526	2.070568e-49	-8.615850e-47
Msa0006040	Msa0037540	-0.812136	4.935405e-51	-8.615850e-47
Msa0007440	Msa0037540	-0.875564	2.789020e-68	-8.615850e-47
Msa0010490	Msa0037540	-0.840115	1.055759e-57	-8.615850e-47
Msa0010500	Msa0037540	-0.838370	2.994647e-57	-8.615850e-47
Msa0011960	Msa0037540	-0.819600	1.066553e-52	-8.615850e-47
Msa0013050	Msa0037540	0.803691	3.089317e-49	-8.615850e-47
Msa0015140	Msa0037540	-0.814403	1.568601e-51	-8.615850e-47
Msa0015460	Msa0037540	-0.837056	6.509358e-57	-8.615850e-47
Msa0015480	Msa0037540	-0.845621	3.621851e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0037540	MtrunA17_Chr1g0195891	98.555	346	1	2	1	345	1	343	0.0	684
Msa0037540	MtrunA17_Chr1g0195891	53.947	76	33	1	297	370	91	166	3.50e-21	94.7
Msa0037540	MtrunA17_Chr4g0066941	53.069	505	176	11	4	459	5	497	3.89e-144	422
Msa0037540	MtrunA17_Chr2g0286151	51.282	468	191	13	1	444	1	455	1.93e-129	384
Msa0037540	MtrunA17_Chr7g0249221	48.626	364	171	8	33	386	9	366	3.62e-108	327
Msa0037540	MtrunA17_Chr5g0438891	36.923	390	209	10	48	433	36	392	2.33e-76	245
Msa0037540	MtrunA17_Chr5g0438891	37.838	111	57	3	12	122	237	335	9.98e-16	79.0
Msa0037540	MtrunA17_Chr5g0438891	38.614	101	50	2	293	388	32	125	2.90e-15	77.8
Msa0037540	MtrunA17_Chr4g0058011	36.207	348	168	13	44	374	227	537	4.87e-61	209
Msa0037540	MtrunA17_Chr4g0058011	50.538	93	43	1	93	185	458	547	1.57e-21	97.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0037540	AT2G47850.1	64.990	477	148	9	3	472	1	465	0.0	573
Msa0037540	AT2G47850.3	64.990	477	148	9	3	472	1	465	0.0	573
Msa0037540	AT2G47850.2	60.168	477	145	10	3	472	1	439	8.97e-178	506
Msa0037540	AT2G47850.4	63.818	351	112	7	129	472	1	343	2.98e-136	396
Msa0037540	AT2G47850.4	53.571	84	39	0	86	169	157	240	1.50e-23	102
Msa0037540	AT2G47850.4	41.414	99	51	2	46	137	162	260	2.30e-16	80.9
Msa0037540	AT5G18550.1	49.036	467	198	15	19	465	18	464	1.82e-125	373
Msa0037540	AT5G18550.4	52.267	419	162	13	19	417	18	418	2.88e-125	372
Msa0037540	AT5G18550.3	49.087	438	186	12	46	465	14	432	5.17e-123	366
Msa0037540	AT3G06410.1	52.184	412	169	11	1	393	1	403	5.03e-119	357

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Find 192 sgRNAs with CRISPR-Local

Find 405 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGGGGCAGTGCAAATT+TGG	0.196691	1_1:+66578126	Msa0037540:CDS
AAAACTGGAACCTGTAAATT+TGG	0.163743	1_1:+66577894	Msa0037540:CDS
AAACAAAATTATACCTGACA+TGG	0.597128	1_1:-66577768	None:intergenic
AAAGAGAGTTAGCGATTTAG+AGG	0.369711	1_1:+66581573	Msa0037540:three_prime_UTR
AAAGTATTTCCTGAAAGACC+CGG	0.677421	1_1:+66578664	Msa0037540:CDS
AACCCCTGGGGAAAGAAGCA+CGG	0.566411	1_1:-66578340	None:intergenic
AAGAGAGTTAGCGATTTAGA+GGG	0.608238	1_1:+66581574	Msa0037540:three_prime_UTR
AAGAGCTACAGGGGACTACC+CGG	0.601311	1_1:+66577728	Msa0037540:CDS
AAGAGTCGAACCGGTCGTAA+TGG	0.402365	1_1:-66577993	None:intergenic
AAGATGATTATGTTTAGACA+GGG	0.643889	1_1:+66581523	Msa0037540:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTGCTTATTATATGAGAAC+CGG	+	chr1_1:66577222-66577241	Msa0037540:CDS	30.0%
AATGCAGATAACTAAAAACG+AGG	-	chr1_1:66577315-66577334	None:intergenic	30.0%
AGGAATAAAATTAACCATCC+AGG	-	chr1_1:66577399-66577418	None:intergenic	30.0%
AAAACTGGAACCTGTAAATT+TGG	+	chr1_1:66577894-66577913	Msa0037540:CDS	30.0%
CATAAATATTTAGTGGAGCT+TGG	-	chr1_1:66577968-66577987	None:intergenic	30.0%
CAAGCTCCACTAAATATTTA+TGG	+	chr1_1:66577966-66577985	Msa0037540:CDS	30.0%
GGGTATCCATAAATATTTAG+TGG	-	chr1_1:66577975-66577994	None:intergenic	30.0%
GTGCTCCTATTATTTGAAAA+CGG	+	chr1_1:66578110-66578129	Msa0037540:CDS	30.0%
TGCTCCTATTATTTGAAAAC+GGG	+	chr1_1:66578111-66578130	Msa0037540:CDS	30.0%
AATTGAGATACCATTCATAC+CGG	-	chr1_1:66578817-66578836	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	66576637	66581614	66576637	ID=Msa0037540;Name=Msa0037540
chr1_1	mRNA	66576637	66581614	66576637	ID=Msa0037540-mRNA-1;Parent=Msa0037540;Name=Msa0037540-mRNA-1;_AED=0.20;_eAED=0.20;_QI=287\|1\|1\|1\|0.57\|0.62\|8\|355\|472
chr1_1	exon	66576637	66576709	66576637	ID=Msa0037540-mRNA-1:exon:21509;Parent=Msa0037540-mRNA-1
chr1_1	exon	66576732	66577042	66576732	ID=Msa0037540-mRNA-1:exon:21510;Parent=Msa0037540-mRNA-1
chr1_1	exon	66577151	66577299	66577151	ID=Msa0037540-mRNA-1:exon:21511;Parent=Msa0037540-mRNA-1
chr1_1	exon	66577714	66577776	66577714	ID=Msa0037540-mRNA-1:exon:21512;Parent=Msa0037540-mRNA-1
chr1_1	exon	66577885	66578004	66577885	ID=Msa0037540-mRNA-1:exon:21513;Parent=Msa0037540-mRNA-1
chr1_1	exon	66578099	66578392	66578099	ID=Msa0037540-mRNA-1:exon:21514;Parent=Msa0037540-mRNA-1
chr1_1	exon	66578505	66578816	66578505	ID=Msa0037540-mRNA-1:exon:21515;Parent=Msa0037540-mRNA-1
chr1_1	exon	66580876	66581614	66580876	ID=Msa0037540-mRNA-1:exon:21516;Parent=Msa0037540-mRNA-1
chr1_1	five_prime_UTR	66576637	66576709	66576637	ID=Msa0037540-mRNA-1:five_prime_utr;Parent=Msa0037540-mRNA-1
chr1_1	five_prime_UTR	66576732	66576945	66576732	ID=Msa0037540-mRNA-1:five_prime_utr;Parent=Msa0037540-mRNA-1
chr1_1	CDS	66576946	66577042	66576946	ID=Msa0037540-mRNA-1:cds;Parent=Msa0037540-mRNA-1
chr1_1	CDS	66577151	66577299	66577151	ID=Msa0037540-mRNA-1:cds;Parent=Msa0037540-mRNA-1
chr1_1	CDS	66577714	66577776	66577714	ID=Msa0037540-mRNA-1:cds;Parent=Msa0037540-mRNA-1
chr1_1	CDS	66577885	66578004	66577885	ID=Msa0037540-mRNA-1:cds;Parent=Msa0037540-mRNA-1
chr1_1	CDS	66578099	66578392	66578099	ID=Msa0037540-mRNA-1:cds;Parent=Msa0037540-mRNA-1
chr1_1	CDS	66578505	66578816	66578505	ID=Msa0037540-mRNA-1:cds;Parent=Msa0037540-mRNA-1
chr1_1	CDS	66580876	66581259	66580876	ID=Msa0037540-mRNA-1:cds;Parent=Msa0037540-mRNA-1
chr1_1	three_prime_UTR	66581260	66581614	66581260	ID=Msa0037540-mRNA-1:three_prime_utr;Parent=Msa0037540-mRNA-1

Gene Sequence

>Msa0037540

ATGGACTTGTACGGTCGGAGCCCCACTAGAAACGGATCCAACCCGCTTAATCAACATGAATGGCGTTCACCTGCTGCTGATGCTACTGCTCTTGGAGAGTCGATGTGGCATTTATCACTTGGTGGTGGTGGTGTTGAATCTTACCCGGAGAGACATGGTGTACCGAATTGTGCTTATTATATGAGAACCGGGTTTTGTGGATATGGTGGAAGGTGCCGTTTCAATCACCCGCGTGATCGTGCTGCGGTTGCTGCTGCAGTAAGAGCTACAGGGGACTACCCGGAGAGGCTTGGCGAACCTCCATGTCAGTATTATTTAAAAACTGGAACCTGTAAATTTGGCGCGTCTTGTAAATTCCACCATCCCAAAAATGGAGGGGGATATTTAAGCCAAGCTCCACTAAATATTTATGGATACCCATTACGACCGGGCGAGAGTGAGTGCTCCTATTATTTGAAAACGGGGCAGTGCAAATTTGGCGTAACTTGTAAATTCCACCATCCTCAACCTGCTGGCACTTCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCAACGGTTCCTCCTCTGCCGGAACAGTTTGGAGGAGCTTCTGCAAGTGTGAGAGTGGCTAGACCTCCTGTGTTACCCGGTTCATATGTACAAGGGGCTTATGGTCCCGTGCTTCTTTCCCCAGGGGTTGTTCCATTTCCTGGATGGAGTCCTTATTCGGCACCTGTAAGCCCTGTGTTATCTCCTGGCGCGCAACCTGCTGTTGGGGCTACTTCTCTTTACGGAGTAACTCAGTTGTCGTCATCAACATCAGCTTTTGCTAGACCTTATACTCCTCTGCCCTCTTCTCCTGGCCCTGGAGGAAACACACTTCAGGAAAAAGTATTTCCTGAAAGACCCGGTGAACCGGTCTGCCAATACTATATGAGAACTGGGGACTGTAAATTTGGATTAGCCTGTCGATATCATCATCCACGGGACCAGGTTGCTGCACGACCACTTCTTAGTCCCTTTGGTCTTCCTCTACGCCCGGGTGTACAGCCTTGTTCATTTTATATACAAAATGGGCACTGCAAGTTTGGCTCGACATGCAAGTTTGATCATCCTGCGGGGTCAATGAGATACAGTCCATCAGCATCTTCTCTTATTGATGTTCCAGTTGCTCCATACCCAGTTGGGTCTTTACTATCTAACCTGGTTCCTTCAACATCTTCAGAATTTCGGCCTGAACTGAAGTCAGGATCCAATTCCTTTTCAGCCAGAATGCATTCATCTGGAAATGGTTCTGGTACCTCTGTTGGTTTAATTTTTTCACAAGGTGGGTCTGTCTCACTGTCTGGTGCGCAACTCTCAAGCCAGAGTTCTGCTTCTTTGAACGGTAGCAGAAGCAGCAGACAGAGTGGTGAGATACATTGA

Protein sequence

>Msa0037540

MDLYGRSPTRNGSNPLNQHEWRSPAADATALGESMWHLSLGGGGVESYPERHGVPNCAYYMRTGFCGYGGRCRFNHPRDRAAVAAAVRATGDYPERLGEPPCQYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNIYGYPLRPGESECSYYLKTGQCKFGVTCKFHHPQPAGTSLPASAPQFYQQVQSPTVPPLPEQFGGASASVRVARPPVLPGSYVQGAYGPVLLSPGVVPFPGWSPYSAPVSPVLSPGAQPAVGATSLYGVTQLSSSTSAFARPYTPLPSSPGPGGNTLQEKVFPERPGEPVCQYYMRTGDCKFGLACRYHHPRDQVAARPLLSPFGLPLRPGVQPCSFYIQNGHCKFGSTCKFDHPAGSMRYSPSASSLIDVPVAPYPVGSLLSNLVPSTSSEFRPELKSGSNSFSARMHSSGNGSGTSVGLIFSQGGSVSLSGAQLSSQSSASLNGSRSSRQSGEIH*