AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0037590

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037590 MtrunA17_Chr1g0195891 98.555 346 1 2 1 345 1 343 0.0 684
Msa0037590 MtrunA17_Chr1g0195891 53.947 76 33 1 297 370 91 166 3.50e-21 94.7
Msa0037590 MtrunA17_Chr4g0066941 53.069 505 176 11 4 459 5 497 3.89e-144 422
Msa0037590 MtrunA17_Chr2g0286151 51.282 468 191 13 1 444 1 455 1.93e-129 384
Msa0037590 MtrunA17_Chr7g0249221 48.626 364 171 8 33 386 9 366 3.62e-108 327
Msa0037590 MtrunA17_Chr5g0438891 36.923 390 209 10 48 433 36 392 2.33e-76 245
Msa0037590 MtrunA17_Chr5g0438891 37.838 111 57 3 12 122 237 335 9.98e-16 79.0
Msa0037590 MtrunA17_Chr5g0438891 38.614 101 50 2 293 388 32 125 2.90e-15 77.8
Msa0037590 MtrunA17_Chr4g0058011 36.207 348 168 13 44 374 227 537 4.87e-61 209
Msa0037590 MtrunA17_Chr4g0058011 50.538 93 43 1 93 185 458 547 1.57e-21 97.8
Msa0037590 MtrunA17_Chr3g0116431 34.985 343 177 9 42 370 165 475 5.02e-59 202
Msa0037590 MtrunA17_Chr3g0116431 47.368 114 54 3 92 204 399 507 1.81e-20 94.0
Msa0037590 MtrunA17_Chr3g0116431 35.000 100 58 2 297 393 171 266 8.73e-13 70.5
Msa0037590 MtrunA17_Chr1g0195901 96.970 99 3 0 374 472 1 99 9.57e-56 180
Msa0037590 MtrunA17_Chr8g0356241 33.803 355 197 9 42 370 132 474 1.14e-55 193
Msa0037590 MtrunA17_Chr8g0356241 36.025 161 56 3 56 170 317 476 2.21e-23 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037590 AT2G47850.1 64.990 477 148 9 3 472 1 465 0.0 573
Msa0037590 AT2G47850.3 64.990 477 148 9 3 472 1 465 0.0 573
Msa0037590 AT2G47850.2 60.168 477 145 10 3 472 1 439 8.97e-178 506
Msa0037590 AT2G47850.4 63.818 351 112 7 129 472 1 343 2.98e-136 396
Msa0037590 AT2G47850.4 53.571 84 39 0 86 169 157 240 1.50e-23 102
Msa0037590 AT2G47850.4 41.414 99 51 2 46 137 162 260 2.30e-16 80.9
Msa0037590 AT5G18550.1 49.036 467 198 15 19 465 18 464 1.82e-125 373
Msa0037590 AT5G18550.4 52.267 419 162 13 19 417 18 418 2.88e-125 372
Msa0037590 AT5G18550.3 49.087 438 186 12 46 465 14 432 5.17e-123 366
Msa0037590 AT3G06410.1 52.184 412 169 11 1 393 1 403 5.03e-119 357
Msa0037590 AT5G18550.2 47.629 464 196 15 19 465 18 451 1.06e-118 355
Msa0037590 AT3G02830.1 46.154 364 166 7 33 386 19 362 3.88e-102 311
Msa0037590 AT3G02830.2 46.409 362 164 7 35 386 1 342 1.24e-101 309
Msa0037590 AT5G16540.1 43.003 393 154 13 33 410 20 357 1.91e-90 280
Msa0037590 AT5G16540.1 37.107 159 78 6 297 446 84 229 2.60e-20 92.8
Msa0037590 AT5G16540.3 43.223 391 152 13 35 410 1 336 4.14e-90 279
Msa0037590 AT5G16540.3 37.107 159 78 6 297 446 63 208 2.16e-20 92.8
Msa0037590 AT5G16540.2 41.432 391 156 13 33 410 20 350 3.69e-84 264
Msa0037590 AT5G16540.2 37.107 159 78 6 297 446 84 229 1.98e-20 93.2
Msa0037590 AT5G16540.4 43.614 321 119 11 35 345 1 269 3.76e-75 237
Msa0037590 AT5G16540.4 37.107 159 78 6 297 446 63 208 9.78e-21 92.4
Msa0037590 AT5G16540.4 43.878 98 50 2 297 393 18 111 5.83e-17 81.3
Msa0037590 AT1G04990.1 35.475 358 171 9 28 370 21 333 2.08e-64 214
Msa0037590 AT1G04990.6 35.475 358 171 9 28 370 21 333 2.08e-64 214
Msa0037590 AT1G04990.2 35.475 358 171 9 28 370 21 333 2.08e-64 214
Msa0037590 AT3G48440.1 35.511 352 192 9 48 387 107 435 4.96e-62 209
Msa0037590 AT3G48440.1 33.858 127 34 2 294 370 104 230 2.80e-15 78.2
Msa0037590 AT3G48440.1 39.241 79 45 2 45 121 340 417 3.61e-11 65.5
Msa0037590 AT2G32930.2 34.667 375 195 12 31 392 21 358 1.69e-58 199
Msa0037590 AT2G32930.3 36.338 355 179 11 48 392 14 331 2.62e-58 198
Msa0037590 AT1G04990.5 33.708 356 160 9 28 370 21 313 1.08e-56 193
Msa0037590 AT1G04990.5 38.043 92 56 1 297 388 44 134 7.13e-14 73.6
Msa0037590 AT5G63260.1 35.429 350 189 11 48 386 98 421 5.59e-54 187
Msa0037590 AT5G63260.1 42.718 103 54 1 89 191 327 424 2.07e-18 87.8
Msa0037590 AT5G63260.1 32.394 142 41 3 296 388 97 232 3.20e-15 78.2
Msa0037590 AT5G63260.1 38.462 78 47 1 45 121 328 405 3.49e-12 68.6
Msa0037590 AT2G32930.1 33.867 375 194 13 31 392 21 354 1.48e-53 186
Msa0037590 AT3G12680.1 33.705 359 195 9 33 370 163 499 7.01e-52 184
Msa0037590 AT3G12680.1 39.024 164 58 4 49 170 338 501 5.68e-27 114
Msa0037590 AT3G12680.1 41.748 103 51 2 28 122 398 499 1.73e-17 85.5
Msa0037590 AT5G63260.2 33.880 366 189 11 48 386 98 437 1.29e-51 181
Msa0037590 AT5G63260.2 42.718 103 54 1 89 191 343 440 2.03e-18 87.8
Msa0037590 AT5G63260.2 45.652 92 42 2 299 388 163 248 7.92e-18 86.3
Msa0037590 AT5G63260.2 38.462 78 47 1 45 121 344 421 3.86e-12 68.6
Msa0037590 AT1G04990.3 35.714 280 125 7 103 370 16 252 3.31e-44 158
Msa0037590 AT1G04990.3 48.571 70 36 0 59 128 17 86 7.62e-18 84.7
Msa0037590 AT1G04990.3 38.017 121 61 4 81 190 165 282 1.10e-13 72.4
Msa0037590 AT1G04990.4 33.453 278 114 7 103 370 16 232 7.57e-37 137
Msa0037590 AT1G04990.4 48.571 70 36 0 59 128 17 86 9.73e-18 84.3
Msa0037590 AT1G48195.1 51.250 80 37 1 292 369 1 80 3.65e-20 85.1
Msa0037590 AT1G48195.1 52.000 75 36 0 93 167 6 80 1.43e-18 80.5

Find 192 sgRNAs with CRISPR-Local

Find 405 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGGGGTTGTTCCATTTCC+TGG 0.149575 1_1:+66627301 Msa0037590:CDS
ACCGGTTCACCGGGTCTTTC+AGG 0.153591 1_1:-66627620 None:intergenic
AAAACTGGAACCTGTAAATT+TGG 0.163743 1_1:+66626841 Msa0037590:CDS
AAAACGGGGCAGTGCAAATT+TGG 0.196691 1_1:+66627073 Msa0037590:CDS
AGAACTGGGGACTGTAAATT+TGG 0.217131 1_1:+66627659 Msa0037590:CDS
CAAGCTCCACTAAATATTTA+TGG 0.224349 1_1:+66626913 Msa0037590:CDS
CGAGAGAGACAGAAAGAAAA+TGG 0.228655 1_1:-66625726 None:intergenic
CTTCAACATCTTCAGAATTT+CGG 0.252360 1_1:+66629991 Msa0037590:CDS
ATGCTCCTCTCAGTATTTAA+TGG 0.254508 1_1:+66630271 Msa0037590:three_prime_UTR
CAAAATGGGCACTGCAAGTT+TGG 0.265662 1_1:+66629849 Msa0037590:CDS
CTGGCGCGCAACCTGCTGTT+GGG 0.306993 1_1:+66627477 Msa0037590:CDS
ACAAGACGCGCCAAATTTAC+AGG 0.307599 1_1:-66626851 None:intergenic
CTTCATACTATTATGCTTTG+TGG 0.327068 1_1:+66630431 Msa0037590:three_prime_UTR
GAAGAGGGCAGAGGAGTATA+AGG 0.330274 1_1:-66627557 None:intergenic
TCCTGAAGTGTGTTTCCTCC+AGG 0.341736 1_1:-66627587 None:intergenic
GGAGATAACACAGGGCTTAC+AGG 0.346214 1_1:-66627455 None:intergenic
TCCTGGATGGAGTCCTTATT+CGG 0.346285 1_1:+66627318 Msa0037590:CDS
CTGCCCTCTTCTCCTGGCCC+TGG 0.347929 1_1:+66627569 Msa0037590:CDS
GTTGGGGCTACTTCTCTTTA+CGG 0.355067 1_1:+66627494 Msa0037590:CDS
TGCTCCTATTATTTGAAAAC+GGG 0.359605 1_1:+66627058 Msa0037590:CDS
CATTCTGGCTGAAAAGGAAT+TGG 0.360799 1_1:-66630033 None:intergenic
CATTCATCTGGAAATGGTTC+TGG 0.366848 1_1:+66630056 Msa0037590:CDS
TCATATGTACAAGGGGCTTA+TGG 0.368244 1_1:+66627262 Msa0037590:CDS
CCAACAGCAGGTTGCGCGCC+AGG 0.368459 1_1:-66627476 None:intergenic
AAAGAGAGTTAGCGATTTAG+AGG 0.369711 1_1:+66630519 Msa0037590:three_prime_UTR
CGACCACTTCTTAGTCCCTT+TGG 0.371098 1_1:+66627725 Msa0037590:CDS
TATGTGTCTCTTACCGAATA+AGG 0.372520 1_1:-66627331 None:intergenic
TAGAATGATCTAGAATGTTC+TGG 0.372795 1_1:-66625797 None:intergenic
TGCCAATACTATATGAGAAC+TGG 0.381157 1_1:+66627644 Msa0037590:CDS
TAAGATGATTATGTTTAGAC+AGG 0.383054 1_1:+66630468 Msa0037590:three_prime_UTR
GCTGCTGATGCTACTGCTCT+TGG 0.385955 1_1:+66625965 Msa0037590:CDS
ACTCCTCTGCCCTCTTCTCC+TGG 0.392892 1_1:+66627563 Msa0037590:CDS
CTCGACTCGACGAGGAAGTT+AGG 0.394395 1_1:+66625745 Msa0037590:five_prime_UTR
GGAGGTTCGCCAAGCCTCTC+CGG 0.397154 1_1:-66626694 None:intergenic
AGAGTCGAACCGGTCGTAAT+GGG 0.398417 1_1:-66626939 None:intergenic
TGTGCTTATTATATGAGAAC+CGG 0.398738 1_1:+66626169 Msa0037590:CDS
TGCAGTGCAAAACTGACATT+CGG 0.398789 1_1:-66630544 None:intergenic
TTGGATCCTGACTTCAGTTC+AGG 0.402122 1_1:-66630014 None:intergenic
CCTGGCGCGCAACCTGCTGT+TGG 0.402151 1_1:+66627476 Msa0037590:CDS
AAGAGTCGAACCGGTCGTAA+TGG 0.402365 1_1:-66626940 None:intergenic
TCAGCCAGAATGCATTCATC+TGG 0.404570 1_1:+66630044 Msa0037590:CDS
AGCCCCTTGTACATATGAAC+CGG 0.406272 1_1:-66627257 None:intergenic
TAAGGACTCCATCCAGGAAA+TGG 0.406810 1_1:-66627313 None:intergenic
TGAATGCATTCTGGCTGAAA+AGG 0.407290 1_1:-66630039 None:intergenic
GGTGGGTCTGTCTCACTGTC+TGG 0.408100 1_1:+66630107 Msa0037590:CDS
GTGCTCCTATTATTTGAAAA+CGG 0.410929 1_1:+66627057 Msa0037590:CDS
GTGTTTACGAGAAAGGAAAA+TGG 0.411487 1_1:-66625836 None:intergenic
CATAAATATTTAGTGGAGCT+TGG 0.417854 1_1:-66626912 None:intergenic
CTGTACAGTGTTTACGAGAA+AGG 0.418611 1_1:-66625843 None:intergenic
CCTCCTCTGCCGGAACAGTT+TGG 0.418933 1_1:+66627190 Msa0037590:CDS
TCCTGAAAGACCCGGTGAAC+CGG 0.419994 1_1:+66627619 Msa0037590:CDS
TTCGGTACACCATGTCTCTC+CGG 0.421325 1_1:-66626145 None:intergenic
CCAACTGGGTATGGAGCAAC+TGG 0.428649 1_1:-66629945 None:intergenic
TATGCTTTGTGGACTTATGC+TGG 0.433115 1_1:+66630442 Msa0037590:three_prime_UTR
GGTCCCGTGCTTCTTTCCCC+AGG 0.436024 1_1:+66627283 Msa0037590:CDS
CCCTGGAGGAAACACACTTC+AGG 0.438306 1_1:+66627586 Msa0037590:CDS
ATTTCCAGATGAATGCATTC+TGG 0.440875 1_1:-66630048 None:intergenic
GCTGCTGCAGTAAGAGCTAC+AGG 0.442302 1_1:+66626664 Msa0037590:CDS
CAGTTGCTCCATACCCAGTT+GGG 0.446844 1_1:+66629946 Msa0037590:CDS
AATGGTTCTGGTACCTCTGT+TGG 0.448422 1_1:+66630068 Msa0037590:CDS
CATTTATCACTTGGTGGTGG+TGG 0.458400 1_1:+66626109 Msa0037590:CDS
CTCATATAATAAGCACAATT+CGG 0.458439 1_1:-66626163 None:intergenic
CCTGAAGTGTGTTTCCTCCA+GGG 0.458829 1_1:-66627586 None:intergenic
AGTAAAGACCCAACTGGGTA+TGG 0.465151 1_1:-66629954 None:intergenic
GGGTTGTTCCATTTCCTGGA+TGG 0.465512 1_1:+66627305 Msa0037590:CDS
GAAGCTCCTCCAAACTGTTC+CGG 0.468963 1_1:-66627199 None:intergenic
GAGAGAGACAGAAAGAAAAT+GGG 0.469232 1_1:-66625725 None:intergenic
CTCATATAGTATTGGCAGAC+CGG 0.470230 1_1:-66627638 None:intergenic
CTTTGGTCTTCCTCTACGCC+CGG 0.470273 1_1:+66627742 Msa0037590:CDS
GTCCCGTGCTTCTTTCCCCA+GGG 0.477072 1_1:+66627284 Msa0037590:CDS
CCAGTTGCTCCATACCCAGT+TGG 0.481757 1_1:+66629945 Msa0037590:CDS
AGAATGCATTCATCTGGAAA+TGG 0.482468 1_1:+66630050 Msa0037590:CDS
TCCTCCAGGGCCAGGAGAAG+AGG 0.485909 1_1:-66627573 None:intergenic
CTTTCTCGTAAACACTGTAC+AGG 0.487912 1_1:+66625844 Msa0037590:five_prime_UTR
CCAGGAAATGGAACAACCCC+TGG 0.488180 1_1:-66627301 None:intergenic
GCTTGGCGAACCTCCATGTC+AGG 0.489422 1_1:+66626702 Msa0037590:CDS
CCCCAGTTCTCATATAGTAT+TGG 0.489917 1_1:-66627646 None:intergenic
CTGAAGATGTTGAAGGAACC+AGG 0.490486 1_1:-66629983 None:intergenic
GTAAGCCCTGTGTTATCTCC+TGG 0.490761 1_1:+66627458 Msa0037590:CDS
CCCTCTTCTCCTGGCCCTGG+AGG 0.494580 1_1:+66627572 Msa0037590:CDS
GGGTATCCATAAATATTTAG+TGG 0.496866 1_1:-66626919 None:intergenic
TTAGATAGTAAAGACCCAAC+TGG 0.497066 1_1:-66629960 None:intergenic
ACCCCTGGGGAAAGAAGCAC+GGG 0.497178 1_1:-66627286 None:intergenic
CGCCATTCATGTTGATTAAG+CGG 0.499950 1_1:-66625935 None:intergenic
GGTCGGAGCCCCACTAGAAA+CGG 0.501024 1_1:+66625905 Msa0037590:CDS
GCAGTGCAAAACTGACATTC+GGG 0.502440 1_1:-66630543 None:intergenic
CCTCTGCCGGAACAGTTTGG+AGG 0.503926 1_1:+66627193 Msa0037590:CDS
TGCAAGTTTGATCATCCTGC+GGG 0.504011 1_1:+66629879 Msa0037590:CDS
CCTCCAAACTGTTCCGGCAG+AGG 0.504937 1_1:-66627193 None:intergenic
TGGGTCTTTACTATCTAACC+TGG 0.505387 1_1:+66629965 Msa0037590:CDS
GGGGACTACCCGGAGAGGCT+TGG 0.507506 1_1:+66626685 Msa0037590:CDS
CGGGTTGGATCCGTTTCTAG+TGG 0.508512 1_1:-66625915 None:intergenic
GCCATTCATGTTGATTAAGC+GGG 0.509081 1_1:-66625934 None:intergenic
GGGTTGGATCCGTTTCTAGT+GGG 0.515461 1_1:-66625914 None:intergenic
AGTGTGTTTCCTCCAGGGCC+AGG 0.516627 1_1:-66627581 None:intergenic
TTCATGTTGATTAAGCGGGT+TGG 0.518663 1_1:-66625930 None:intergenic
TCTTTACCTTTGTACAGAGC+AGG 0.520007 1_1:-66630501 None:intergenic
TTTCGGCCTGAACTGAAGTC+AGG 0.521259 1_1:+66630008 Msa0037590:CDS
CAGAGTTCTGCTTCTTTGAA+CGG 0.524210 1_1:+66630146 Msa0037590:CDS
CGAAATTCTGAAGATGTTGA+AGG 0.524251 1_1:-66629990 None:intergenic
ACCGAATAAGGACTCCATCC+AGG 0.527011 1_1:-66627319 None:intergenic
CCTCCAGGGCCAGGAGAAGA+GGG 0.528497 1_1:-66627572 None:intergenic
GGGCCAGGAGAAGAGGGCAG+AGG 0.530606 1_1:-66627566 None:intergenic
GCTGATGCTACTGCTCTTGG+AGG 0.530886 1_1:+66625968 Msa0037590:CDS
GTATTGGCAGACCGGTTCAC+CGG 0.534770 1_1:-66627630 None:intergenic
GATCACGCGGGTGATTGAAA+CGG 0.536117 1_1:-66626216 None:intergenic
CTCTCTCTCTGGAAACTGTA+CGG 0.536785 1_1:-66625610 None:intergenic
GAGGTTCGCCAAGCCTCTCC+GGG 0.539007 1_1:-66626693 None:intergenic
TCCAACGGTTCCTCCTCTGC+CGG 0.542744 1_1:+66627180 Msa0037590:CDS
TTCCACCATCCTCAACCTGC+TGG 0.542831 1_1:+66627109 Msa0037590:CDS
AGAGAAGTAGCCCCAACAGC+AGG 0.544267 1_1:-66627488 None:intergenic
ATATCATCATCCACGGGACC+AGG 0.545094 1_1:+66627694 Msa0037590:CDS
ATGTGGCATTTATCACTTGG+TGG 0.548863 1_1:+66626103 Msa0037590:CDS
TCGGTACACCATGTCTCTCC+GGG 0.549964 1_1:-66626144 None:intergenic
TCCGGCAGAGGAGGAACCGT+TGG 0.550152 1_1:-66627181 None:intergenic
AATGAAGTGCCAGCAGGTTG+AGG 0.551017 1_1:-66627118 None:intergenic
TATTGGCAGACCGGTTCACC+GGG 0.551065 1_1:-66627629 None:intergenic
CCGTGGATGATGATATCGAC+AGG 0.551295 1_1:-66627687 None:intergenic
CGTTCAAAGAAGCAGAACTC+TGG 0.551424 1_1:-66630145 None:intergenic
AGAGCAGTAGCATCAGCAGC+AGG 0.552367 1_1:-66625962 None:intergenic
ACCCGCTTAATCAACATGAA+TGG 0.553551 1_1:+66625933 Msa0037590:CDS
CACACGAACGAGAGAACACA+AGG 0.555271 1_1:+66625684 Msa0037590:five_prime_UTR
TGCCAGCAGGTTGAGGATGG+TGG 0.556077 1_1:-66627111 None:intergenic
TCGATGTGGCATTTATCACT+TGG 0.559752 1_1:+66626100 Msa0037590:CDS
CCAAACTGTTCCGGCAGAGG+AGG 0.560230 1_1:-66627190 None:intergenic
GCCAATACTATATGAGAACT+GGG 0.562063 1_1:+66627645 Msa0037590:CDS
AGCACACAAGAATCACGATT+GGG 0.562359 1_1:-66630335 None:intergenic
GGGCGTAGAGGAAGACCAAA+GGG 0.563721 1_1:-66627740 None:intergenic
TAAAATTGAGGTGCAGATGC+TGG 0.564467 1_1:-66627142 None:intergenic
AACCCCTGGGGAAAGAAGCA+CGG 0.566411 1_1:-66627287 None:intergenic
TGGCGCGCAACCTGCTGTTG+GGG 0.568122 1_1:+66627478 Msa0037590:CDS
GAAGTGGTCGTGCAGCAACC+TGG 0.569368 1_1:-66627712 None:intergenic
GCTAGACCTCCTGTGTTACC+CGG 0.569379 1_1:+66627238 Msa0037590:CDS
TCTAGAATGTTCTGGAAGAT+CGG 0.571009 1_1:-66625789 None:intergenic
CAGGAAATGGAACAACCCCT+GGG 0.572341 1_1:-66627300 None:intergenic
CTGTCTCTCTCGACTCGACG+AGG 0.573937 1_1:+66625737 Msa0037590:five_prime_UTR
AGCTTCTGCAAGTGTGAGAG+TGG 0.577326 1_1:+66627216 Msa0037590:CDS
TTTCTTCCTGCTCTGTACAA+AGG 0.580033 1_1:+66630495 Msa0037590:three_prime_UTR
TGGCATTTATCACTTGGTGG+TGG 0.580267 1_1:+66626106 Msa0037590:CDS
TCAACAGGTGCAGTCTCCAA+CGG 0.580807 1_1:+66627165 Msa0037590:CDS
CGTGCAGCAACCTGGTCCCG+TGG 0.581143 1_1:-66627704 None:intergenic
CTGTATCTCATTGACCCCGC+AGG 0.585745 1_1:-66629894 None:intergenic
GTGCTTATTATATGAGAACC+GGG 0.587111 1_1:+66626170 Msa0037590:CDS
TAGCACACAAGAATCACGAT+TGG 0.588728 1_1:-66630336 None:intergenic
TCAATAAGAGAAGATGCTGA+TGG 0.590082 1_1:-66629918 None:intergenic
GGTTGGATCCGTTTCTAGTG+GGG 0.592076 1_1:-66625913 None:intergenic
AAACAAAATTATACCTGACA+TGG 0.597128 1_1:-66626715 None:intergenic
TTACCCGGTTCATATGTACA+AGG 0.598382 1_1:+66627253 Msa0037590:CDS
ACCATTCATACCGGGCGTAG+AGG 0.599219 1_1:-66627752 None:intergenic
TTATGGATACCCATTACGAC+CGG 0.600721 1_1:+66626930 Msa0037590:CDS
AAGAGCTACAGGGGACTACC+CGG 0.601311 1_1:+66626675 Msa0037590:CDS
CTGCTGCAGTAAGAGCTACA+GGG 0.603414 1_1:+66626665 Msa0037590:CDS
GAATCTTACCCGGAGAGACA+TGG 0.604072 1_1:+66626136 Msa0037590:CDS
AGGAGCATGAACAGAAGCAA+TGG 0.605978 1_1:-66630256 None:intergenic
AAGAGAGTTAGCGATTTAGA+GGG 0.608238 1_1:+66630520 Msa0037590:three_prime_UTR
AGCATGAACAGAAGCAATGG+TGG 0.610209 1_1:-66630253 None:intergenic
CCTGTCGATATCATCATCCA+CGG 0.616717 1_1:+66627687 Msa0037590:CDS
ACCCGGTTCATATGTACAAG+GGG 0.619952 1_1:+66627255 Msa0037590:CDS
TGCGCGCCAGGAGATAACAC+AGG 0.621580 1_1:-66627464 None:intergenic
GCTGGCAATGAAGTGCCAGC+AGG 0.622750 1_1:-66627124 None:intergenic
TCCACCATATCCACAAAACC+CGG 0.626060 1_1:-66626188 None:intergenic
TAGATAGTAAAGACCCAACT+GGG 0.626186 1_1:-66629959 None:intergenic
ATTCTTGTGTGCTATACACC+AGG 0.628639 1_1:+66630345 Msa0037590:three_prime_UTR
CTGTCGATATCATCATCCAC+GGG 0.629057 1_1:+66627688 Msa0037590:CDS
TCCCGTGCTTCTTTCCCCAG+GGG 0.630198 1_1:+66627285 Msa0037590:CDS
TGCACCTGTTGATAAAATTG+AGG 0.642079 1_1:-66627154 None:intergenic
GCCCCTTGTACATATGAACC+GGG 0.643721 1_1:-66627256 None:intergenic
AAGATGATTATGTTTAGACA+GGG 0.643889 1_1:+66630469 Msa0037590:three_prime_UTR
TGGTGGTGTTGAATCTTACC+CGG 0.644232 1_1:+66626126 Msa0037590:CDS
AGCAGAAGCAGCAGACAGAG+TGG 0.645532 1_1:+66630170 Msa0037590:CDS
ACATATGAACCGGGTAACAC+AGG 0.645643 1_1:-66627247 None:intergenic
ATTACCGCAGCACGATCACG+CGG 0.645892 1_1:-66626229 None:intergenic
ATGCAAGTTTGATCATCCTG+CGG 0.650257 1_1:+66629878 Msa0037590:CDS
AGACCAAAGGGACTAAGAAG+TGG 0.653237 1_1:-66627728 None:intergenic
AAGTGCCAGCAGGTTGAGGA+TGG 0.654749 1_1:-66627114 None:intergenic
CAAAATTATACCTGACATGG+AGG 0.657604 1_1:-66626712 None:intergenic
TACCCGGTTCATATGTACAA+GGG 0.670537 1_1:+66627254 Msa0037590:CDS
GCTCCTATTATTTGAAAACG+GGG 0.671672 1_1:+66627059 Msa0037590:CDS
CGGGCGTAGAGGAAGACCAA+AGG 0.672188 1_1:-66627741 None:intergenic
TCACCCGCGTGATCGTGCTG+CGG 0.674265 1_1:+66626225 Msa0037590:CDS
AAAGTATTTCCTGAAAGACC+CGG 0.677421 1_1:+66627611 Msa0037590:CDS
GCGCGCCAGGAGATAACACA+GGG 0.680593 1_1:-66627463 None:intergenic
CTACAGGGGACTACCCGGAG+AGG 0.687189 1_1:+66626680 Msa0037590:CDS
AAGCATAAAAGAGAATGACC+TGG 0.694248 1_1:-66630363 None:intergenic
TGCTGCAGTAAGAGCTACAG+GGG 0.695738 1_1:+66626666 Msa0037590:CDS
GTTTATGTTCAGAGTCGATG+TGG 0.699078 1_1:+66626086 Msa0037590:intron
TATGAACCGGGTAACACAGG+AGG 0.706559 1_1:-66627244 None:intergenic
AGTTGCCATTAAATACTGAG+AGG 0.712026 1_1:-66630276 None:intergenic
AGGAAATGGAACAACCCCTG+GGG 0.738169 1_1:-66627299 None:intergenic
CCAATACTATATGAGAACTG+GGG 0.738213 1_1:+66627646 Msa0037590:CDS
TTACCGCAGCACGATCACGC+GGG 0.739210 1_1:-66626228 None:intergenic
GCAAGTTTGATCATCCTGCG+GGG 0.750469 1_1:+66629880 Msa0037590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTTTGTAATTTATTAATT+AGG + chr1_1:66626046-66626065 Msa0037590:intron 10.0%
!! TTAATTGAATTTAACAATTT+AGG - chr1_1:66626366-66626385 None:intergenic 10.0%
!! AAATTGTTAAATTCAATTAA+AGG + chr1_1:66626366-66626385 Msa0037590:intron 10.0%
!!! CATTTTTTTCAATTTTTTAT+CGG + chr1_1:66626429-66626448 Msa0037590:intron 10.0%
!! ATATTATTTACACATTTATA+TGG - chr1_1:66627870-66627889 None:intergenic 10.0%
!! AAAAAATAAAATGAATGTTA+AGG - chr1_1:66628098-66628117 None:intergenic 10.0%
!!! CATTATTTGTATATTTTTTA+TGG + chr1_1:66628796-66628815 Msa0037590:intron 10.0%
!! AAATAATATGTATTCTATTC+AGG + chr1_1:66627881-66627900 Msa0037590:intron 15.0%
!! AAATAAACACATTAATAGTT+GGG - chr1_1:66628224-66628243 None:intergenic 15.0%
!!! ATTCAGACATTTATTTTAAT+CGG - chr1_1:66629742-66629761 None:intergenic 15.0%
!!! TAATTTATTTTCTAGAAAAC+AGG + chr1_1:66629800-66629819 Msa0037590:intron 15.0%
!!! AATTTATTTTCTAGAAAACA+GGG + chr1_1:66629801-66629820 Msa0037590:intron 15.0%
!!! TTTTGTATATAAAATGAACA+AGG - chr1_1:66629834-66629853 None:intergenic 15.0%
!!! TGTTCATTTTATATACAAAA+TGG + chr1_1:66629834-66629853 Msa0037590:CDS 15.0%
!!! GTTCATTTTATATACAAAAT+GGG + chr1_1:66629835-66629854 Msa0037590:CDS 15.0%
!!! TTTGTTTGGGTTTTTTTTTT+AGG - chr1_1:66625872-66625891 None:intergenic 20.0%
!! AAAAAAAACCCAAACAAAAA+TGG + chr1_1:66625874-66625893 Msa0037590:exon 20.0%
!! ATGTTATGTTATGTTATGTT+AGG + chr1_1:66626023-66626042 Msa0037590:intron 20.0%
!! TGTTATGTTATGTTATGTTA+GGG + chr1_1:66626024-66626043 Msa0037590:intron 20.0%
!!! ATTAATTAGGGTTTTGATTT+TGG + chr1_1:66626059-66626078 Msa0037590:intron 20.0%
!! TAAAAGGGTTATACTAATTA+CGG + chr1_1:66626791-66626810 Msa0037590:intron 20.0%
!! GAACAGTATTATTTAAAAAC+TGG + chr1_1:66626826-66626845 Msa0037590:intron 20.0%
!! AATTCTCTGTAAATTACATA+AGG - chr1_1:66626983-66627002 None:intergenic 20.0%
!!! TTTACAGAGAATTTTTCATA+TGG + chr1_1:66626990-66627009 Msa0037590:intron 20.0%
!!! TATATATGTGATCTGAAATA+TGG + chr1_1:66627360-66627379 Msa0037590:intron 20.0%
!!! CAAATCTCCTTTTAAAAAAA+GGG + chr1_1:66627944-66627963 Msa0037590:intron 20.0%
!! CAAATAAACACATTAATAGT+TGG - chr1_1:66628225-66628244 None:intergenic 20.0%
!! CAACTATTAATGTGTTTATT+TGG + chr1_1:66628223-66628242 Msa0037590:intron 20.0%
!! TAATATCACGTTCATTAAAA+AGG - chr1_1:66629167-66629186 None:intergenic 20.0%
!! TTAACTATCAATTCTGAATT+AGG - chr1_1:66629316-66629335 None:intergenic 20.0%
!!! ATTACTTCGTAAGTAAATTT+TGG + chr1_1:66629507-66629526 Msa0037590:intron 20.0%
!!! TAATCTAAAGCTACTTAATA+TGG - chr1_1:66629658-66629677 None:intergenic 20.0%
! CTCATATAATAAGCACAATT+CGG - chr1_1:66626166-66626185 None:intergenic 25.0%
! TGCATAAACCTATATTAGTA+AGG + chr1_1:66626538-66626557 Msa0037590:intron 25.0%
!!! CCTTTTTTCCTTACTAATAT+AGG - chr1_1:66626549-66626568 None:intergenic 25.0%
! CCTATATTAGTAAGGAAAAA+AGG + chr1_1:66626546-66626565 Msa0037590:intron 25.0%
! AAACAAAATTATACCTGACA+TGG - chr1_1:66626718-66626737 None:intergenic 25.0%
! AAAAGGGTTATACTAATTAC+GGG + chr1_1:66626792-66626811 Msa0037590:intron 25.0%
! ATATGGTTAAACTTAAACCA+TGG + chr1_1:66627007-66627026 Msa0037590:intron 25.0%
!! TGATGATTTTAAATTAGTGC+AGG + chr1_1:66627430-66627449 Msa0037590:intron 25.0%
!!! TAAACTATAAGAAGTACTGA+TGG - chr1_1:66627919-66627938 None:intergenic 25.0%
! ATCAGTACTTCTTATAGTTT+AGG + chr1_1:66627918-66627937 Msa0037590:intron 25.0%
!!! CCTTTTTTTAAAAGGAGATT+TGG - chr1_1:66627946-66627965 None:intergenic 25.0%
!!! CCAAATCTCCTTTTAAAAAA+AGG + chr1_1:66627943-66627962 Msa0037590:intron 25.0%
!!! TTTGGTTCCCTTTTTTTAAA+AGG - chr1_1:66627954-66627973 None:intergenic 25.0%
! CTTAAAAACCATGTTATCAA+GGG - chr1_1:66628141-66628160 None:intergenic 25.0%
! TCTTAAAAACCATGTTATCA+AGG - chr1_1:66628142-66628161 None:intergenic 25.0%
! TAGAGTTAGTTAAATCTTAG+CGG + chr1_1:66628759-66628778 Msa0037590:intron 25.0%
!! TGTCTGTTTATTCTGAAAAA+TGG + chr1_1:66628978-66628997 Msa0037590:intron 25.0%
!! GTCTGTTTATTCTGAAAAAT+GGG + chr1_1:66628979-66628998 Msa0037590:intron 25.0%
!! TCTGTTTATTCTGAAAAATG+GGG + chr1_1:66628980-66628999 Msa0037590:intron 25.0%
! TACATCACTACATTGAAATT+TGG - chr1_1:66629358-66629377 None:intergenic 25.0%
!!! TTAATTTGTGTGCATTCTTT+TGG + chr1_1:66629763-66629782 Msa0037590:intron 25.0%
!!! TAATTTGTGTGCATTCTTTT+GGG + chr1_1:66629764-66629783 Msa0037590:intron 25.0%
! TGAAAAAATTAAACCAACAG+AGG - chr1_1:66630084-66630103 None:intergenic 25.0%
!!! GTTGGTTTAATTTTTTCACA+AGG + chr1_1:66630086-66630105 Msa0037590:CDS 25.0%
!!! GTTTAATTTTTTCACAAGGT+GGG + chr1_1:66630090-66630109 Msa0037590:CDS 25.0%
! TAAGATGATTATGTTTAGAC+AGG + chr1_1:66630468-66630487 Msa0037590:three_prime_UTR 25.0%
! AAGATGATTATGTTTAGACA+GGG + chr1_1:66630469-66630488 Msa0037590:three_prime_UTR 25.0%
! TAGAATGATCTAGAATGTTC+TGG - chr1_1:66625800-66625819 None:intergenic 30.0%
!! GTACAAGTCCATTTTTGTTT+GGG - chr1_1:66625885-66625904 None:intergenic 30.0%
! CAAACAAAAATGGACTTGTA+CGG + chr1_1:66625884-66625903 Msa0037590:exon 30.0%
!!! AATTAGGGTTTTGATTTTGG+TGG + chr1_1:66626062-66626081 Msa0037590:intron 30.0%
TGTGCTTATTATATGAGAAC+CGG + chr1_1:66626169-66626188 Msa0037590:CDS 30.0%
AATGCAGATAACTAAAAACG+AGG - chr1_1:66626262-66626281 None:intergenic 30.0%
AGGAATAAAATTAACCATCC+AGG - chr1_1:66626346-66626365 None:intergenic 30.0%
! TCAGTGATATACATTTGCTA+AGG + chr1_1:66626462-66626481 Msa0037590:intron 30.0%
! CAGTGATATACATTTGCTAA+GGG + chr1_1:66626463-66626482 Msa0037590:intron 30.0%
! TAAGTGATGTACATTTGCTA+AGG + chr1_1:66626602-66626621 Msa0037590:intron 30.0%
! AAGTGATGTACATTTGCTAA+GGG + chr1_1:66626603-66626622 Msa0037590:intron 30.0%
! AACTGACTCAAATATTGTTC+AGG + chr1_1:66626639-66626658 Msa0037590:intron 30.0%
AAAACTGGAACCTGTAAATT+TGG + chr1_1:66626841-66626860 Msa0037590:CDS 30.0%
CATAAATATTTAGTGGAGCT+TGG - chr1_1:66626915-66626934 None:intergenic 30.0%
CAAGCTCCACTAAATATTTA+TGG + chr1_1:66626913-66626932 Msa0037590:CDS 30.0%
GGGTATCCATAAATATTTAG+TGG - chr1_1:66626922-66626941 None:intergenic 30.0%
!! CATGGATTTTGTTTAACACA+GGG + chr1_1:66627025-66627044 Msa0037590:intron 30.0%
GTGCTCCTATTATTTGAAAA+CGG + chr1_1:66627057-66627076 Msa0037590:CDS 30.0%
TGCTCCTATTATTTGAAAAC+GGG + chr1_1:66627058-66627077 Msa0037590:CDS 30.0%
! ATATGTGATCTGAAATATGG+CGG + chr1_1:66627363-66627382 Msa0037590:intron 30.0%
AATTGAGATACCATTCATAC+CGG - chr1_1:66627764-66627783 None:intergenic 30.0%
GTATGAATGGTATCTCAATT+TGG + chr1_1:66627764-66627783 Msa0037590:intron 30.0%
GTTTAGACTAACAACAGATT+TGG - chr1_1:66627972-66627991 None:intergenic 30.0%
GTTCTTCAATTTATGAGACT+AGG - chr1_1:66628360-66628379 None:intergenic 30.0%
AATGAAAGCGGAATAGATAT+GGG - chr1_1:66628403-66628422 None:intergenic 30.0%
AAATGAAAGCGGAATAGATA+TGG - chr1_1:66628404-66628423 None:intergenic 30.0%
CTCAGAATATCAAATGAAAG+CGG - chr1_1:66628415-66628434 None:intergenic 30.0%
!!! CTTGTGACTTTGTTTTAAGA+TGG + chr1_1:66628529-66628548 Msa0037590:intron 30.0%
GTTGTAATTCATGAAAGACA+TGG - chr1_1:66628702-66628721 None:intergenic 30.0%
! CTGTTTATTCTGAAAAATGG+GGG + chr1_1:66628981-66629000 Msa0037590:intron 30.0%
AAGGAAATAGATTGAATAGC+AGG - chr1_1:66629148-66629167 None:intergenic 30.0%
TTCTAAGTGTCTGTAAAACA+AGG + chr1_1:66629196-66629215 Msa0037590:intron 30.0%
TTTGAATGCTTCTTTATCTC+AGG + chr1_1:66629271-66629290 Msa0037590:intron 30.0%
! AATTAGGTTTTGCTAACCTT+GGG - chr1_1:66629300-66629319 None:intergenic 30.0%
! TTTGGAGTTGTAAACTGAAA+AGG - chr1_1:66629340-66629359 None:intergenic 30.0%
AAAGAATGGAAACTACGATA+CGG - chr1_1:66629404-66629423 None:intergenic 30.0%
AAGCACAACTTAAGAAAGAA+TGG - chr1_1:66629418-66629437 None:intergenic 30.0%
!!! TCGTAAGTAAATTTTGGTTG+CGG + chr1_1:66629513-66629532 Msa0037590:intron 30.0%
TCATACGCATCATAAATGAA+AGG - chr1_1:66629708-66629727 None:intergenic 30.0%
CTTCAACATCTTCAGAATTT+CGG + chr1_1:66629991-66630010 Msa0037590:CDS 30.0%
!!! GGTTTAATTTTTTCACAAGG+TGG + chr1_1:66630089-66630108 Msa0037590:CDS 30.0%
!! TTGGGTGACAAATTTTTCAA+TGG - chr1_1:66630320-66630339 None:intergenic 30.0%
CTTCATACTATTATGCTTTG+TGG + chr1_1:66630431-66630450 Msa0037590:three_prime_UTR 30.0%
GAGAGAGACAGAAAGAAAAT+GGG - chr1_1:66625728-66625747 None:intergenic 35.0%
!! TCTAGAATGTTCTGGAAGAT+CGG - chr1_1:66625792-66625811 None:intergenic 35.0%
GTGTTTACGAGAAAGGAAAA+TGG - chr1_1:66625839-66625858 None:intergenic 35.0%
!! CGTACAAGTCCATTTTTGTT+TGG - chr1_1:66625886-66625905 None:intergenic 35.0%
GTGCTTATTATATGAGAACC+GGG + chr1_1:66626170-66626189 Msa0037590:CDS 35.0%
!!! TAGTAGATGCTATTTTTGCC+TGG + chr1_1:66626325-66626344 Msa0037590:intron 35.0%
CAAAATTATACCTGACATGG+AGG - chr1_1:66626715-66626734 None:intergenic 35.0%
AAATTCCACCATCCCAAAAA+TGG + chr1_1:66626874-66626893 Msa0037590:CDS 35.0%
!! AAATATCCCCCTCCATTTTT+GGG - chr1_1:66626889-66626908 None:intergenic 35.0%
! TAAATATCCCCCTCCATTTT+TGG - chr1_1:66626890-66626909 None:intergenic 35.0%
AAGAAAAAGAAGAGTCGAAC+CGG - chr1_1:66626952-66626971 None:intergenic 35.0%
CCTGTGTTAAACAAAATCCA+TGG - chr1_1:66627027-66627046 None:intergenic 35.0%
!! CCATGGATTTTGTTTAACAC+AGG + chr1_1:66627024-66627043 Msa0037590:intron 35.0%
GCTCCTATTATTTGAAAACG+GGG + chr1_1:66627059-66627078 Msa0037590:CDS 35.0%
! TGCACCTCAATTTTATCAAC+AGG + chr1_1:66627150-66627169 Msa0037590:CDS 35.0%
! TGCACCTGTTGATAAAATTG+AGG - chr1_1:66627157-66627176 None:intergenic 35.0%
TATGTGTCTCTTACCGAATA+AGG - chr1_1:66627334-66627353 None:intergenic 35.0%
! AAAGTATTTCCTGAAAGACC+CGG + chr1_1:66627611-66627630 Msa0037590:CDS 35.0%
TGCCAATACTATATGAGAAC+TGG + chr1_1:66627644-66627663 Msa0037590:CDS 35.0%
GCCAATACTATATGAGAACT+GGG + chr1_1:66627645-66627664 Msa0037590:CDS 35.0%
CCAATACTATATGAGAACTG+GGG + chr1_1:66627646-66627665 Msa0037590:CDS 35.0%
ATTGAGATACCATTCATACC+GGG - chr1_1:66627763-66627782 None:intergenic 35.0%
ATGTATTCTATTCAGGAGTC+AGG + chr1_1:66627888-66627907 Msa0037590:intron 35.0%
! TTTTTGCAAAACTGCAGAGT+TGG + chr1_1:66628115-66628134 Msa0037590:intron 35.0%
AAGATTGTGATATTCCTCGT+AGG + chr1_1:66628158-66628177 Msa0037590:intron 35.0%
CATTTCAGTGGCAATCTATT+AGG - chr1_1:66628302-66628321 None:intergenic 35.0%
CTAATAGATTGCCACTGAAA+TGG + chr1_1:66628300-66628319 Msa0037590:intron 35.0%
ATGAAAGCGGAATAGATATG+GGG - chr1_1:66628402-66628421 None:intergenic 35.0%
AGCTAAGAAAAAGATTGGAG+GGG - chr1_1:66628451-66628470 None:intergenic 35.0%
GAGCTAAGAAAAAGATTGGA+GGG - chr1_1:66628452-66628471 None:intergenic 35.0%
GATGGAGCTAAGAAAAAGAT+TGG - chr1_1:66628456-66628475 None:intergenic 35.0%
! TTTTCTTAGCTCCATCATGT+CGG + chr1_1:66628460-66628479 Msa0037590:intron 35.0%
CAAAGCAAAGAAAACAGTGT+GGG - chr1_1:66628631-66628650 None:intergenic 35.0%
ACAAAGCAAAGAAAACAGTG+TGG - chr1_1:66628632-66628651 None:intergenic 35.0%
TCAAAATTGAGATCCTTCCT+AGG - chr1_1:66628867-66628886 None:intergenic 35.0%
ATTCCTTGATGGAACATGAT+TGG + chr1_1:66628899-66628918 Msa0037590:intron 35.0%
!! ATTGGCTTTCTGTATCTATC+CGG + chr1_1:66628917-66628936 Msa0037590:intron 35.0%
GGATACATGGATCAAACTTA+TGG + chr1_1:66629002-66629021 Msa0037590:intron 35.0%
GGATCAAACTTATGGTTACT+TGG + chr1_1:66629010-66629029 Msa0037590:intron 35.0%
TCATCCAATAACTTGAGCTT+AGG - chr1_1:66629079-66629098 None:intergenic 35.0%
ATTGGATGAATGCACATGAT+TGG + chr1_1:66629090-66629109 Msa0037590:intron 35.0%
! TAGCTTGTGAGTATCTTATG+TGG + chr1_1:66629240-66629259 Msa0037590:intron 35.0%
AGCTTGTGAGTATCTTATGT+GGG + chr1_1:66629241-66629260 Msa0037590:intron 35.0%
! GAATTAGGTTTTGCTAACCT+TGG - chr1_1:66629301-66629320 None:intergenic 35.0%
! TTCTTAAGTTGTGCTTTGCT+TGG + chr1_1:66629422-66629441 Msa0037590:intron 35.0%
TCAATAAGAGAAGATGCTGA+TGG - chr1_1:66629921-66629940 None:intergenic 35.0%
TAGATAGTAAAGACCCAACT+GGG - chr1_1:66629962-66629981 None:intergenic 35.0%
TTAGATAGTAAAGACCCAAC+TGG - chr1_1:66629963-66629982 None:intergenic 35.0%
! CGAAATTCTGAAGATGTTGA+AGG - chr1_1:66629993-66630012 None:intergenic 35.0%
ATTTCCAGATGAATGCATTC+TGG - chr1_1:66630051-66630070 None:intergenic 35.0%
AGAATGCATTCATCTGGAAA+TGG + chr1_1:66630050-66630069 Msa0037590:CDS 35.0%
ATGCTCCTCTCAGTATTTAA+TGG + chr1_1:66630271-66630290 Msa0037590:three_prime_UTR 35.0%
AGTTGCCATTAAATACTGAG+AGG - chr1_1:66630279-66630298 None:intergenic 35.0%
AAGCATAAAAGAGAATGACC+TGG - chr1_1:66630366-66630385 None:intergenic 35.0%
AAAGAGAGTTAGCGATTTAG+AGG + chr1_1:66630519-66630538 Msa0037590:three_prime_UTR 35.0%
AAGAGAGTTAGCGATTTAGA+GGG + chr1_1:66630520-66630539 Msa0037590:three_prime_UTR 35.0%
! TCTTTTTCTCTCTCTCTCTC+TGG - chr1_1:66625624-66625643 None:intergenic 40.0%
CGAGAGAGACAGAAAGAAAA+TGG - chr1_1:66625729-66625748 None:intergenic 40.0%
CTGTACAGTGTTTACGAGAA+AGG - chr1_1:66625846-66625865 None:intergenic 40.0%
CTTTCTCGTAAACACTGTAC+AGG + chr1_1:66625844-66625863 Msa0037590:five_prime_UTR 40.0%
! CAAAAATGGACTTGTACGGT+CGG + chr1_1:66625888-66625907 Msa0037590:exon 40.0%
! TTCATGTTGATTAAGCGGGT+TGG - chr1_1:66625933-66625952 None:intergenic 40.0%
ACCCGCTTAATCAACATGAA+TGG + chr1_1:66625933-66625952 Msa0037590:CDS 40.0%
! GCCATTCATGTTGATTAAGC+GGG - chr1_1:66625937-66625956 None:intergenic 40.0%
! CGCCATTCATGTTGATTAAG+CGG - chr1_1:66625938-66625957 None:intergenic 40.0%
GTTTATGTTCAGAGTCGATG+TGG + chr1_1:66626086-66626105 Msa0037590:intron 40.0%
TCGATGTGGCATTTATCACT+TGG + chr1_1:66626100-66626119 Msa0037590:CDS 40.0%
ATGTGGCATTTATCACTTGG+TGG + chr1_1:66626103-66626122 Msa0037590:CDS 40.0%
! TATATGAGAACCGGGTTTTG+TGG + chr1_1:66626178-66626197 Msa0037590:CDS 40.0%
!!! AGATGCTATTTTTGCCTGGA+TGG + chr1_1:66626329-66626348 Msa0037590:intron 40.0%
TTATGGATACCCATTACGAC+CGG + chr1_1:66626930-66626949 Msa0037590:CDS 40.0%
! CTGCCCCGTTTTCAAATAAT+AGG - chr1_1:66627065-66627084 None:intergenic 40.0%
TAAAATTGAGGTGCAGATGC+TGG - chr1_1:66627145-66627164 None:intergenic 40.0%
TTACCCGGTTCATATGTACA+AGG + chr1_1:66627253-66627272 Msa0037590:CDS 40.0%
TACCCGGTTCATATGTACAA+GGG + chr1_1:66627254-66627273 Msa0037590:CDS 40.0%
TCATATGTACAAGGGGCTTA+TGG + chr1_1:66627262-66627281 Msa0037590:CDS 40.0%
!! CTCATATAGTATTGGCAGAC+CGG - chr1_1:66627641-66627660 None:intergenic 40.0%
CCCCAGTTCTCATATAGTAT+TGG - chr1_1:66627649-66627668 None:intergenic 40.0%
AGAACTGGGGACTGTAAATT+TGG + chr1_1:66627659-66627678 Msa0037590:CDS 40.0%
GTGCGTACATGTATTATGTG+TGG + chr1_1:66628188-66628207 Msa0037590:intron 40.0%
ACCAGGTTAGTGTGTATACT+TGG - chr1_1:66628253-66628272 None:intergenic 40.0%
GTATACACACTAACCTGGTT+TGG + chr1_1:66628254-66628273 Msa0037590:intron 40.0%
ATAGATTGCCACTGAAATGG+CGG + chr1_1:66628303-66628322 Msa0037590:intron 40.0%
! AAAGTTTTCCGCCATTTCAG+TGG - chr1_1:66628314-66628333 None:intergenic 40.0%
ATTGAAGAACCCCATCCTTA+TGG + chr1_1:66628370-66628389 Msa0037590:intron 40.0%
GGAGCTAAGAAAAAGATTGG+AGG - chr1_1:66628453-66628472 None:intergenic 40.0%
AAGATGAAACACCCACAAAG+GGG - chr1_1:66628512-66628531 None:intergenic 40.0%
CAAGATGAAACACCCACAAA+GGG - chr1_1:66628513-66628532 None:intergenic 40.0%
ACAAGATGAAACACCCACAA+AGG - chr1_1:66628514-66628533 None:intergenic 40.0%
TGAACTCAACACCGTATCTT+TGG + chr1_1:66628553-66628572 Msa0037590:intron 40.0%
ATGGGTCTTGACCAAAGATA+CGG - chr1_1:66628567-66628586 None:intergenic 40.0%
ATCTTTGGTCAAGACCCATA+AGG + chr1_1:66628568-66628587 Msa0037590:intron 40.0%
GAGAAACAGGTAGTCCTTAT+GGG - chr1_1:66628585-66628604 None:intergenic 40.0%
TGAGAAACAGGTAGTCCTTA+TGG - chr1_1:66628586-66628605 None:intergenic 40.0%
! ACTACCTGTTTCTCACTGTT+GGG + chr1_1:66628591-66628610 Msa0037590:intron 40.0%
TTCTCTTCCCAATTGATCCT+AGG + chr1_1:66628847-66628866 Msa0037590:intron 40.0%
GATCCTTCCTAGGATCAATT+GGG - chr1_1:66628857-66628876 None:intergenic 40.0%
AGATCCTTCCTAGGATCAAT+TGG - chr1_1:66628858-66628877 None:intergenic 40.0%
AACCTTGCTTGATTCCTTGA+TGG + chr1_1:66628888-66628907 Msa0037590:intron 40.0%
TTCCATCAAGGAATCAAGCA+AGG - chr1_1:66628893-66628912 None:intergenic 40.0%
AAGCCAATCATGTTCCATCA+AGG - chr1_1:66628905-66628924 None:intergenic 40.0%
!! AGACCCAAGCTTTTGTTTGA+GGG - chr1_1:66628945-66628964 None:intergenic 40.0%
TCTGAAAAATGGGGGATACA+TGG + chr1_1:66628989-66629008 Msa0037590:intron 40.0%
TAACTTGAGCTTAGGAGAGT+TGG - chr1_1:66629071-66629090 None:intergenic 40.0%
CTCTCCTAAGCTCAAGTTAT+TGG + chr1_1:66629072-66629091 Msa0037590:intron 40.0%
TCTTTATCTCAGGAAACCCA+AGG + chr1_1:66629281-66629300 Msa0037590:intron 40.0%
TAAGTTGTGCTTTGCTTGGT+TGG + chr1_1:66629426-66629445 Msa0037590:intron 40.0%
ATCAAAAGTCCCCTGTAAGA+GGG - chr1_1:66629552-66629571 None:intergenic 40.0%
ATGCAAGTTTGATCATCCTG+CGG + chr1_1:66629878-66629897 Msa0037590:CDS 40.0%
TGGGTCTTTACTATCTAACC+TGG + chr1_1:66629965-66629984 Msa0037590:CDS 40.0%
! CATTCTGGCTGAAAAGGAAT+TGG - chr1_1:66630036-66630055 None:intergenic 40.0%
! TGAATGCATTCTGGCTGAAA+AGG - chr1_1:66630042-66630061 None:intergenic 40.0%
CATTCATCTGGAAATGGTTC+TGG + chr1_1:66630056-66630075 Msa0037590:CDS 40.0%
CAGAGTTCTGCTTCTTTGAA+CGG + chr1_1:66630146-66630165 Msa0037590:CDS 40.0%
AGCACACAAGAATCACGATT+GGG - chr1_1:66630338-66630357 None:intergenic 40.0%
TAGCACACAAGAATCACGAT+TGG - chr1_1:66630339-66630358 None:intergenic 40.0%
ATTCTTGTGTGCTATACACC+AGG + chr1_1:66630345-66630364 Msa0037590:three_prime_UTR 40.0%
TATGCTTTGTGGACTTATGC+TGG + chr1_1:66630442-66630461 Msa0037590:three_prime_UTR 40.0%
TTTCTTCCTGCTCTGTACAA+AGG + chr1_1:66630495-66630514 Msa0037590:three_prime_UTR 40.0%
TCTTTACCTTTGTACAGAGC+AGG - chr1_1:66630504-66630523 None:intergenic 40.0%
! CTCTCTCTCTGGAAACTGTA+CGG - chr1_1:66625613-66625632 None:intergenic 45.0%
! TGGCATTTATCACTTGGTGG+TGG + chr1_1:66626106-66626125 Msa0037590:CDS 45.0%
!! CATTTATCACTTGGTGGTGG+TGG + chr1_1:66626109-66626128 Msa0037590:CDS 45.0%
! TGGTGGTGTTGAATCTTACC+CGG + chr1_1:66626126-66626145 Msa0037590:CDS 45.0%
!! AGAACCGGGTTTTGTGGATA+TGG + chr1_1:66626184-66626203 Msa0037590:CDS 45.0%
TCCACCATATCCACAAAACC+CGG - chr1_1:66626191-66626210 None:intergenic 45.0%
!! GGTTTTGTGGATATGGTGGA+AGG + chr1_1:66626191-66626210 Msa0037590:CDS 45.0%
ACAAGACGCGCCAAATTTAC+AGG - chr1_1:66626854-66626873 None:intergenic 45.0%
TTCCACCATCCCAAAAATGG+AGG + chr1_1:66626877-66626896 Msa0037590:CDS 45.0%
TCCACCATCCCAAAAATGGA+GGG + chr1_1:66626878-66626897 Msa0037590:CDS 45.0%
AAAACGGGGCAGTGCAAATT+TGG + chr1_1:66627073-66627092 Msa0037590:CDS 45.0%
ACATATGAACCGGGTAACAC+AGG - chr1_1:66627250-66627269 None:intergenic 45.0%
ACCCGGTTCATATGTACAAG+GGG + chr1_1:66627255-66627274 Msa0037590:CDS 45.0%
AGCCCCTTGTACATATGAAC+CGG - chr1_1:66627260-66627279 None:intergenic 45.0%
TAAGGACTCCATCCAGGAAA+TGG - chr1_1:66627316-66627335 None:intergenic 45.0%
TCCTGGATGGAGTCCTTATT+CGG + chr1_1:66627318-66627337 Msa0037590:CDS 45.0%
GTTGGGGCTACTTCTCTTTA+CGG + chr1_1:66627494-66627513 Msa0037590:CDS 45.0%
CCTGTCGATATCATCATCCA+CGG + chr1_1:66627687-66627706 Msa0037590:CDS 45.0%
CTGTCGATATCATCATCCAC+GGG + chr1_1:66627688-66627707 Msa0037590:CDS 45.0%
AGACCAAAGGGACTAAGAAG+TGG - chr1_1:66627731-66627750 None:intergenic 45.0%
AACAAGTTAGACACCAGGCA+GGG - chr1_1:66628027-66628046 None:intergenic 45.0%
! AGAGTTGGCCCTTGATAACA+TGG + chr1_1:66628130-66628149 Msa0037590:intron 45.0%
GCCAAGTATACACACTAACC+TGG + chr1_1:66628249-66628268 Msa0037590:intron 45.0%
TACAGCAATCTCACCAAACC+AGG - chr1_1:66628270-66628289 None:intergenic 45.0%
!! TGGTTTGGTGAGATTGCTGT+AGG + chr1_1:66628269-66628288 Msa0037590:intron 45.0%
GATATGGGGAAACAGCCATA+AGG - chr1_1:66628388-66628407 None:intergenic 45.0%
! TTTTAGCACCACCGACATGA+TGG - chr1_1:66628474-66628493 None:intergenic 45.0%
! GTGGTGCTAAAACTCTGCAT+TGG + chr1_1:66628482-66628501 Msa0037590:intron 45.0%
! GACTACCTGTTTCTCACTGT+TGG + chr1_1:66628590-66628609 Msa0037590:intron 45.0%
AGTTCCCAACAGTGAGAAAC+AGG - chr1_1:66628598-66628617 None:intergenic 45.0%
GTTTCTCACTGTTGGGAACT+TGG + chr1_1:66628598-66628617 Msa0037590:intron 45.0%
CTTCCCAATTGATCCTAGGA+AGG + chr1_1:66628851-66628870 Msa0037590:intron 45.0%
!! AAGCTTTTGTTTGAGGGAGC+CGG - chr1_1:66628939-66628958 None:intergenic 45.0%
GCTCCCTCAAACAAAAGCTT+GGG + chr1_1:66628939-66628958 Msa0037590:intron 45.0%
!! CAGACCCAAGCTTTTGTTTG+AGG - chr1_1:66628946-66628965 None:intergenic 45.0%
GAAGCCATGATACCATGTCA+AGG + chr1_1:66629044-66629063 Msa0037590:intron 45.0%
TGGTCCTTGACATGGTATCA+TGG - chr1_1:66629051-66629070 None:intergenic 45.0%
!! TTGGTGTCATAGCATGGTTG+AGG + chr1_1:66629445-66629464 Msa0037590:intron 45.0%
!! TGGTGTCATAGCATGGTTGA+GGG + chr1_1:66629446-66629465 Msa0037590:intron 45.0%
GGTTGAGGGGATATGAAACA+TGG + chr1_1:66629460-66629479 Msa0037590:intron 45.0%
TGGCTACAACAAAAGCGATG+TGG + chr1_1:66629480-66629499 Msa0037590:intron 45.0%
!! ATCGTTTTTGCCCCTCTTAC+AGG + chr1_1:66629538-66629557 Msa0037590:intron 45.0%
!! TCGTTTTTGCCCCTCTTACA+GGG + chr1_1:66629539-66629558 Msa0037590:intron 45.0%
TCAAAAGTCCCCTGTAAGAG+GGG - chr1_1:66629551-66629570 None:intergenic 45.0%
CATCAAAAGTCCCCTGTAAG+AGG - chr1_1:66629553-66629572 None:intergenic 45.0%
! CTCTTACAGGGGACTTTTGA+TGG + chr1_1:66629551-66629570 Msa0037590:intron 45.0%
! CAAAATGGGCACTGCAAGTT+TGG + chr1_1:66629849-66629868 Msa0037590:CDS 45.0%
TGCAAGTTTGATCATCCTGC+GGG + chr1_1:66629879-66629898 Msa0037590:CDS 45.0%
AGTAAAGACCCAACTGGGTA+TGG - chr1_1:66629957-66629976 None:intergenic 45.0%
CTGAAGATGTTGAAGGAACC+AGG - chr1_1:66629986-66630005 None:intergenic 45.0%
TTGGATCCTGACTTCAGTTC+AGG - chr1_1:66630017-66630036 None:intergenic 45.0%
TCAGCCAGAATGCATTCATC+TGG + chr1_1:66630044-66630063 Msa0037590:CDS 45.0%
!! AATGGTTCTGGTACCTCTGT+TGG + chr1_1:66630068-66630087 Msa0037590:CDS 45.0%
CGTTCAAAGAAGCAGAACTC+TGG - chr1_1:66630148-66630167 None:intergenic 45.0%
AGCATGAACAGAAGCAATGG+TGG - chr1_1:66630256-66630275 None:intergenic 45.0%
! AGGAGCATGAACAGAAGCAA+TGG - chr1_1:66630259-66630278 None:intergenic 45.0%
!!! ATTTTGTAATTTATTAATTA+GGG + chr1_1:66626047-66626066 Msa0037590:intron 5.0%
!! TATATTTACTATTTAATAAA+AGG + chr1_1:66626775-66626794 Msa0037590:intron 5.0%
!! ATATTTACTATTTAATAAAA+GGG + chr1_1:66626776-66626795 Msa0037590:intron 5.0%
CACACGAACGAGAGAACACA+AGG + chr1_1:66625684-66625703 Msa0037590:five_prime_UTR 50.0%
!! GGTTGGATCCGTTTCTAGTG+GGG - chr1_1:66625916-66625935 None:intergenic 50.0%
!! GGGTTGGATCCGTTTCTAGT+GGG - chr1_1:66625917-66625936 None:intergenic 50.0%
GAATCTTACCCGGAGAGACA+TGG + chr1_1:66626136-66626155 Msa0037590:CDS 50.0%
TTCGGTACACCATGTCTCTC+CGG - chr1_1:66626148-66626167 None:intergenic 50.0%
!! ACCGGGTTTTGTGGATATGG+TGG + chr1_1:66626187-66626206 Msa0037590:CDS 50.0%
GATCACGCGGGTGATTGAAA+CGG - chr1_1:66626219-66626238 None:intergenic 50.0%
CTGCTGCAGTAAGAGCTACA+GGG + chr1_1:66626665-66626684 Msa0037590:CDS 50.0%
TGCTGCAGTAAGAGCTACAG+GGG + chr1_1:66626666-66626685 Msa0037590:CDS 50.0%
CCACCATCCCAAAAATGGAG+GGG + chr1_1:66626879-66626898 Msa0037590:CDS 50.0%
CACCATCCCAAAAATGGAGG+GGG + chr1_1:66626880-66626899 Msa0037590:CDS 50.0%
!! ATCCCCCTCCATTTTTGGGA+TGG - chr1_1:66626885-66626904 None:intergenic 50.0%
AGAGTCGAACCGGTCGTAAT+GGG - chr1_1:66626942-66626961 None:intergenic 50.0%
AAGAGTCGAACCGGTCGTAA+TGG - chr1_1:66626943-66626962 None:intergenic 50.0%
! AATGAAGTGCCAGCAGGTTG+AGG - chr1_1:66627121-66627140 None:intergenic 50.0%
TCAACAGGTGCAGTCTCCAA+CGG + chr1_1:66627165-66627184 Msa0037590:CDS 50.0%
GAAGCTCCTCCAAACTGTTC+CGG - chr1_1:66627202-66627221 None:intergenic 50.0%
AGCTTCTGCAAGTGTGAGAG+TGG + chr1_1:66627216-66627235 Msa0037590:CDS 50.0%
TATGAACCGGGTAACACAGG+AGG - chr1_1:66627247-66627266 None:intergenic 50.0%
GCCCCTTGTACATATGAACC+GGG - chr1_1:66627259-66627278 None:intergenic 50.0%
AGGAAATGGAACAACCCCTG+GGG - chr1_1:66627302-66627321 None:intergenic 50.0%
CAGGAAATGGAACAACCCCT+GGG - chr1_1:66627303-66627322 None:intergenic 50.0%
GGGTTGTTCCATTTCCTGGA+TGG + chr1_1:66627305-66627324 Msa0037590:CDS 50.0%
ACCGAATAAGGACTCCATCC+AGG - chr1_1:66627322-66627341 None:intergenic 50.0%
GGAGATAACACAGGGCTTAC+AGG - chr1_1:66627458-66627477 None:intergenic 50.0%
GTAAGCCCTGTGTTATCTCC+TGG + chr1_1:66627458-66627477 Msa0037590:CDS 50.0%
! GAAGAGGGCAGAGGAGTATA+AGG - chr1_1:66627560-66627579 None:intergenic 50.0%
CCTGAAGTGTGTTTCCTCCA+GGG - chr1_1:66627589-66627608 None:intergenic 50.0%
TCCTGAAGTGTGTTTCCTCC+AGG - chr1_1:66627590-66627609 None:intergenic 50.0%
CCGTGGATGATGATATCGAC+AGG - chr1_1:66627690-66627709 None:intergenic 50.0%
ATATCATCATCCACGGGACC+AGG + chr1_1:66627694-66627713 Msa0037590:CDS 50.0%
CGACCACTTCTTAGTCCCTT+TGG + chr1_1:66627725-66627744 Msa0037590:CDS 50.0%
TTAAGACCAATGTCCCTGCC+TGG + chr1_1:66628011-66628030 Msa0037590:intron 50.0%
CAACAAGTTAGACACCAGGC+AGG - chr1_1:66628028-66628047 None:intergenic 50.0%
CAGGCAACAAGTTAGACACC+AGG - chr1_1:66628032-66628051 None:intergenic 50.0%
AATGCAACTAAAGCCAGCGC+AGG - chr1_1:66628051-66628070 None:intergenic 50.0%
!! TGCGCTGGCTTTAGTTGCAT+TGG + chr1_1:66628050-66628069 Msa0037590:intron 50.0%
!! GCGCTGGCTTTAGTTGCATT+GGG + chr1_1:66628051-66628070 Msa0037590:intron 50.0%
!! CGCTGGCTTTAGTTGCATTG+GGG + chr1_1:66628052-66628071 Msa0037590:intron 50.0%
TACGCACGAGTAATCCTACG+AGG - chr1_1:66628175-66628194 None:intergenic 50.0%
GGGAAACAGCCATAAGGATG+GGG - chr1_1:66628382-66628401 None:intergenic 50.0%
GGGGAAACAGCCATAAGGAT+GGG - chr1_1:66628383-66628402 None:intergenic 50.0%
TGGGGAAACAGCCATAAGGA+TGG - chr1_1:66628384-66628403 None:intergenic 50.0%
TCTTAGCTCCATCATGTCGG+TGG + chr1_1:66628463-66628482 Msa0037590:intron 50.0%
TGCATTGGAGTTCCCCTTTG+TGG + chr1_1:66628497-66628516 Msa0037590:intron 50.0%
GCATTGGAGTTCCCCTTTGT+GGG + chr1_1:66628498-66628517 Msa0037590:intron 50.0%
GGCTCCCTCAAACAAAAGCT+TGG + chr1_1:66628938-66628957 Msa0037590:intron 50.0%
! AGGAGAGTTGGTCCTTGACA+TGG - chr1_1:66629059-66629078 None:intergenic 50.0%
!! GCTTGGTTGGTGTCATAGCA+TGG + chr1_1:66629439-66629458 Msa0037590:intron 50.0%
! GGTGTCATAGCATGGTTGAG+GGG + chr1_1:66629447-66629466 Msa0037590:intron 50.0%
! CGTTTTTGCCCCTCTTACAG+GGG + chr1_1:66629540-66629559 Msa0037590:intron 50.0%
GCAAGTTTGATCATCCTGCG+GGG + chr1_1:66629880-66629899 Msa0037590:CDS 50.0%
CAGTTGCTCCATACCCAGTT+GGG + chr1_1:66629946-66629965 Msa0037590:CDS 50.0%
TTTCGGCCTGAACTGAAGTC+AGG + chr1_1:66630008-66630027 Msa0037590:CDS 50.0%
! CTCGACTCGACGAGGAAGTT+AGG + chr1_1:66625745-66625764 Msa0037590:five_prime_UTR 55.0%
! CGGGTTGGATCCGTTTCTAG+TGG - chr1_1:66625918-66625937 None:intergenic 55.0%
AGAGCAGTAGCATCAGCAGC+AGG - chr1_1:66625965-66625984 None:intergenic 55.0%
GCTGCTGATGCTACTGCTCT+TGG + chr1_1:66625965-66625984 Msa0037590:CDS 55.0%
GCTGATGCTACTGCTCTTGG+AGG + chr1_1:66625968-66625987 Msa0037590:CDS 55.0%
TCGGTACACCATGTCTCTCC+GGG - chr1_1:66626147-66626166 None:intergenic 55.0%
ATTACCGCAGCACGATCACG+CGG - chr1_1:66626232-66626251 None:intergenic 55.0%
GCTGCTGCAGTAAGAGCTAC+AGG + chr1_1:66626664-66626683 Msa0037590:CDS 55.0%
AAGAGCTACAGGGGACTACC+CGG + chr1_1:66626675-66626694 Msa0037590:CDS 55.0%
!!! CCCCTCCATTTTTGGGATGG+TGG - chr1_1:66626882-66626901 None:intergenic 55.0%
TTCCACCATCCTCAACCTGC+TGG + chr1_1:66627109-66627128 Msa0037590:CDS 55.0%
! AAGTGCCAGCAGGTTGAGGA+TGG - chr1_1:66627117-66627136 None:intergenic 55.0%
GCTAGACCTCCTGTGTTACC+CGG + chr1_1:66627238-66627257 Msa0037590:CDS 55.0%
AACCCCTGGGGAAAGAAGCA+CGG - chr1_1:66627290-66627309 None:intergenic 55.0%
CCAGGAAATGGAACAACCCC+TGG - chr1_1:66627304-66627323 None:intergenic 55.0%
CCAGGGGTTGTTCCATTTCC+TGG + chr1_1:66627301-66627320 Msa0037590:CDS 55.0%
AGAGAAGTAGCCCCAACAGC+AGG - chr1_1:66627491-66627510 None:intergenic 55.0%
CCCTGGAGGAAACACACTTC+AGG + chr1_1:66627586-66627605 Msa0037590:CDS 55.0%
TCCTGAAAGACCCGGTGAAC+CGG + chr1_1:66627619-66627638 Msa0037590:CDS 55.0%
! TATTGGCAGACCGGTTCACC+GGG - chr1_1:66627632-66627651 None:intergenic 55.0%
! GTATTGGCAGACCGGTTCAC+CGG - chr1_1:66627633-66627652 None:intergenic 55.0%
GGGCGTAGAGGAAGACCAAA+GGG - chr1_1:66627743-66627762 None:intergenic 55.0%
! CTTTGGTCTTCCTCTACGCC+CGG + chr1_1:66627742-66627761 Msa0037590:CDS 55.0%
TCCTCTACGCCCGGTATGAA+TGG + chr1_1:66627751-66627770 Msa0037590:intron 55.0%
ACCATTCATACCGGGCGTAG+AGG - chr1_1:66627755-66627774 None:intergenic 55.0%
TAGACACCAGGCAGGGACAT+TGG - chr1_1:66628020-66628039 None:intergenic 55.0%
!! GTCTAACTTGTTGCCTGCGC+TGG + chr1_1:66628035-66628054 Msa0037590:intron 55.0%
CTGTATCTCATTGACCCCGC+AGG - chr1_1:66629897-66629916 None:intergenic 55.0%
CCAACTGGGTATGGAGCAAC+TGG - chr1_1:66629948-66629967 None:intergenic 55.0%
CCAGTTGCTCCATACCCAGT+TGG + chr1_1:66629945-66629964 Msa0037590:CDS 55.0%
AGCAGAAGCAGCAGACAGAG+TGG + chr1_1:66630170-66630189 Msa0037590:CDS 55.0%
! CTGTCTCTCTCGACTCGACG+AGG + chr1_1:66625737-66625756 Msa0037590:five_prime_UTR 60.0%
GGTCGGAGCCCCACTAGAAA+CGG + chr1_1:66625905-66625924 Msa0037590:CDS 60.0%
TTACCGCAGCACGATCACGC+GGG - chr1_1:66626231-66626250 None:intergenic 60.0%
GCTTGGCGAACCTCCATGTC+AGG + chr1_1:66626702-66626721 Msa0037590:CDS 60.0%
! TGCCAGCAGGTTGAGGATGG+TGG - chr1_1:66627114-66627133 None:intergenic 60.0%
! GCTGGCAATGAAGTGCCAGC+AGG - chr1_1:66627127-66627146 None:intergenic 60.0%
TCCAACGGTTCCTCCTCTGC+CGG + chr1_1:66627180-66627199 Msa0037590:CDS 60.0%
CCAAACTGTTCCGGCAGAGG+AGG - chr1_1:66627193-66627212 None:intergenic 60.0%
CCTCCTCTGCCGGAACAGTT+TGG + chr1_1:66627190-66627209 Msa0037590:CDS 60.0%
CCTCCAAACTGTTCCGGCAG+AGG - chr1_1:66627196-66627215 None:intergenic 60.0%
CCTCTGCCGGAACAGTTTGG+AGG + chr1_1:66627193-66627212 Msa0037590:CDS 60.0%
GTCCCGTGCTTCTTTCCCCA+GGG + chr1_1:66627284-66627303 Msa0037590:CDS 60.0%
TCCCGTGCTTCTTTCCCCAG+GGG + chr1_1:66627285-66627304 Msa0037590:CDS 60.0%
! ACCCCTGGGGAAAGAAGCAC+GGG - chr1_1:66627289-66627308 None:intergenic 60.0%
GCGCGCCAGGAGATAACACA+GGG - chr1_1:66627466-66627485 None:intergenic 60.0%
TGCGCGCCAGGAGATAACAC+AGG - chr1_1:66627467-66627486 None:intergenic 60.0%
ACTCCTCTGCCCTCTTCTCC+TGG + chr1_1:66627563-66627582 Msa0037590:CDS 60.0%
AGTGTGTTTCCTCCAGGGCC+AGG - chr1_1:66627584-66627603 None:intergenic 60.0%
! ACCGGTTCACCGGGTCTTTC+AGG - chr1_1:66627623-66627642 None:intergenic 60.0%
GAAGTGGTCGTGCAGCAACC+TGG - chr1_1:66627715-66627734 None:intergenic 60.0%
CGGGCGTAGAGGAAGACCAA+AGG - chr1_1:66627744-66627763 None:intergenic 60.0%
GGTGGGTCTGTCTCACTGTC+TGG + chr1_1:66630107-66630126 Msa0037590:CDS 60.0%
TCACCCGCGTGATCGTGCTG+CGG + chr1_1:66626225-66626244 Msa0037590:CDS 65.0%
CTACAGGGGACTACCCGGAG+AGG + chr1_1:66626680-66626699 Msa0037590:CDS 65.0%
GAGGTTCGCCAAGCCTCTCC+GGG - chr1_1:66626696-66626715 None:intergenic 65.0%
GGAGGTTCGCCAAGCCTCTC+CGG - chr1_1:66626697-66626716 None:intergenic 65.0%
TCCGGCAGAGGAGGAACCGT+TGG - chr1_1:66627184-66627203 None:intergenic 65.0%
GGTCCCGTGCTTCTTTCCCC+AGG + chr1_1:66627283-66627302 Msa0037590:CDS 65.0%
CTGGCGCGCAACCTGCTGTT+GGG + chr1_1:66627477-66627496 Msa0037590:CDS 65.0%
TGGCGCGCAACCTGCTGTTG+GGG + chr1_1:66627478-66627497 Msa0037590:CDS 65.0%
CCTCCAGGGCCAGGAGAAGA+GGG - chr1_1:66627575-66627594 None:intergenic 65.0%
TCCTCCAGGGCCAGGAGAAG+AGG - chr1_1:66627576-66627595 None:intergenic 65.0%
GGGGACTACCCGGAGAGGCT+TGG + chr1_1:66626685-66626704 Msa0037590:CDS 70.0%
CCAACAGCAGGTTGCGCGCC+AGG - chr1_1:66627479-66627498 None:intergenic 70.0%
CCTGGCGCGCAACCTGCTGT+TGG + chr1_1:66627476-66627495 Msa0037590:CDS 70.0%
GGGCCAGGAGAAGAGGGCAG+AGG - chr1_1:66627569-66627588 None:intergenic 70.0%
CTGCCCTCTTCTCCTGGCCC+TGG + chr1_1:66627569-66627588 Msa0037590:CDS 70.0%
CCCTCTTCTCCTGGCCCTGG+AGG + chr1_1:66627572-66627591 Msa0037590:CDS 70.0%
CGTGCAGCAACCTGGTCCCG+TGG - chr1_1:66627707-66627726 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 66625584 66630560 66625584 ID=Msa0037590;Name=Msa0037590
chr1_1 mRNA 66625584 66630560 66625584 ID=Msa0037590-mRNA-1;Parent=Msa0037590;Name=Msa0037590-mRNA-1;_AED=0.20;_eAED=0.20;_QI=287|1|1|1|0.57|0.62|8|355|472
chr1_1 exon 66625584 66625656 66625584 ID=Msa0037590-mRNA-1:exon:21546;Parent=Msa0037590-mRNA-1
chr1_1 exon 66625679 66625989 66625679 ID=Msa0037590-mRNA-1:exon:21547;Parent=Msa0037590-mRNA-1
chr1_1 exon 66626098 66626246 66626098 ID=Msa0037590-mRNA-1:exon:21548;Parent=Msa0037590-mRNA-1
chr1_1 exon 66626661 66626723 66626661 ID=Msa0037590-mRNA-1:exon:21549;Parent=Msa0037590-mRNA-1
chr1_1 exon 66626832 66626951 66626832 ID=Msa0037590-mRNA-1:exon:21550;Parent=Msa0037590-mRNA-1
chr1_1 exon 66627046 66627339 66627046 ID=Msa0037590-mRNA-1:exon:21551;Parent=Msa0037590-mRNA-1
chr1_1 exon 66627452 66627763 66627452 ID=Msa0037590-mRNA-1:exon:21552;Parent=Msa0037590-mRNA-1
chr1_1 exon 66629822 66630560 66629822 ID=Msa0037590-mRNA-1:exon:21553;Parent=Msa0037590-mRNA-1
chr1_1 five_prime_UTR 66625584 66625656 66625584 ID=Msa0037590-mRNA-1:five_prime_utr;Parent=Msa0037590-mRNA-1
chr1_1 five_prime_UTR 66625679 66625892 66625679 ID=Msa0037590-mRNA-1:five_prime_utr;Parent=Msa0037590-mRNA-1
chr1_1 CDS 66625893 66625989 66625893 ID=Msa0037590-mRNA-1:cds;Parent=Msa0037590-mRNA-1
chr1_1 CDS 66626098 66626246 66626098 ID=Msa0037590-mRNA-1:cds;Parent=Msa0037590-mRNA-1
chr1_1 CDS 66626661 66626723 66626661 ID=Msa0037590-mRNA-1:cds;Parent=Msa0037590-mRNA-1
chr1_1 CDS 66626832 66626951 66626832 ID=Msa0037590-mRNA-1:cds;Parent=Msa0037590-mRNA-1
chr1_1 CDS 66627046 66627339 66627046 ID=Msa0037590-mRNA-1:cds;Parent=Msa0037590-mRNA-1
chr1_1 CDS 66627452 66627763 66627452 ID=Msa0037590-mRNA-1:cds;Parent=Msa0037590-mRNA-1
chr1_1 CDS 66629822 66630205 66629822 ID=Msa0037590-mRNA-1:cds;Parent=Msa0037590-mRNA-1
chr1_1 three_prime_UTR 66630206 66630560 66630206 ID=Msa0037590-mRNA-1:three_prime_utr;Parent=Msa0037590-mRNA-1
Gene Sequence

>Msa0037590

ATGGACTTGTACGGTCGGAGCCCCACTAGAAACGGATCCAACCCGCTTAATCAACATGAATGGCGTTCACCTGCTGCTGATGCTACTGCTCTTGGAGAGTCGATGTGGCATTTATCACTTGGTGGTGGTGGTGTTGAATCTTACCCGGAGAGACATGGTGTACCGAATTGTGCTTATTATATGAGAACCGGGTTTTGTGGATATGGTGGAAGGTGCCGTTTCAATCACCCGCGTGATCGTGCTGCGGTTGCTGCTGCAGTAAGAGCTACAGGGGACTACCCGGAGAGGCTTGGCGAACCTCCATGTCAGTATTATTTAAAAACTGGAACCTGTAAATTTGGCGCGTCTTGTAAATTCCACCATCCCAAAAATGGAGGGGGATATTTAAGCCAAGCTCCACTAAATATTTATGGATACCCATTACGACCGGGCGAGAGTGAGTGCTCCTATTATTTGAAAACGGGGCAGTGCAAATTTGGCGTAACTTGTAAATTCCACCATCCTCAACCTGCTGGCACTTCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCAACGGTTCCTCCTCTGCCGGAACAGTTTGGAGGAGCTTCTGCAAGTGTGAGAGTGGCTAGACCTCCTGTGTTACCCGGTTCATATGTACAAGGGGCTTATGGTCCCGTGCTTCTTTCCCCAGGGGTTGTTCCATTTCCTGGATGGAGTCCTTATTCGGCACCTGTAAGCCCTGTGTTATCTCCTGGCGCGCAACCTGCTGTTGGGGCTACTTCTCTTTACGGAGTAACTCAGTTGTCGTCATCAACATCAGCTTTTGCTAGACCTTATACTCCTCTGCCCTCTTCTCCTGGCCCTGGAGGAAACACACTTCAGGAAAAAGTATTTCCTGAAAGACCCGGTGAACCGGTCTGCCAATACTATATGAGAACTGGGGACTGTAAATTTGGATTAGCCTGTCGATATCATCATCCACGGGACCAGGTTGCTGCACGACCACTTCTTAGTCCCTTTGGTCTTCCTCTACGCCCGGGTGTACAGCCTTGTTCATTTTATATACAAAATGGGCACTGCAAGTTTGGCTCGACATGCAAGTTTGATCATCCTGCGGGGTCAATGAGATACAGTCCATCAGCATCTTCTCTTATTGATGTTCCAGTTGCTCCATACCCAGTTGGGTCTTTACTATCTAACCTGGTTCCTTCAACATCTTCAGAATTTCGGCCTGAACTGAAGTCAGGATCCAATTCCTTTTCAGCCAGAATGCATTCATCTGGAAATGGTTCTGGTACCTCTGTTGGTTTAATTTTTTCACAAGGTGGGTCTGTCTCACTGTCTGGTGCGCAACTCTCAAGCCAGAGTTCTGCTTCTTTGAACGGTAGCAGAAGCAGCAGACAGAGTGGTGAGATACATTGA
Protein sequence

>Msa0037590

MDLYGRSPTRNGSNPLNQHEWRSPAADATALGESMWHLSLGGGGVESYPERHGVPNCAYYMRTGFCGYGGRCRFNHPRDRAAVAAAVRATGDYPERLGEPPCQYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNIYGYPLRPGESECSYYLKTGQCKFGVTCKFHHPQPAGTSLPASAPQFYQQVQSPTVPPLPEQFGGASASVRVARPPVLPGSYVQGAYGPVLLSPGVVPFPGWSPYSAPVSPVLSPGAQPAVGATSLYGVTQLSSSTSAFARPYTPLPSSPGPGGNTLQEKVFPERPGEPVCQYYMRTGDCKFGLACRYHHPRDQVAARPLLSPFGLPLRPGVQPCSFYIQNGHCKFGSTCKFDHPAGSMRYSPSASSLIDVPVAPYPVGSLLSNLVPSTSSEFRPELKSGSNSFSARMHSSGNGSGTSVGLIFSQGGSVSLSGAQLSSQSSASLNGSRSSRQSGEIH*