AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0389210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0389210 MtrunA17_Chr7g0235641 92.742 248 1 2 1 231 1 248 8.20e-166 457
Msa0389210 MtrunA17_Chr8g0339841 65.900 261 57 7 2 231 1 260 1.10e-105 305
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0389210 AT3G25070.2 40.400 250 93 12 1 231 12 224 4.60e-40 137
Msa0389210 AT3G25070.1 40.650 246 90 12 5 231 3 211 6.49e-39 134

Find 82 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTTTATATGTAAATATTTA+AGG 0.061456 3_1:+93849621 Msa0389210:three_prime_UTR
GTGCTTACTTATCAAATTAA+AGG 0.184490 3_1:-93849712 None:intergenic
CGTTCTCATGTTCCAAAGTT+TGG 0.243771 3_1:+93848110 Msa0389210:CDS
AAGTGCACACCTCACTTTAG+AGG 0.290403 3_1:+93849584 Msa0389210:three_prime_UTR
AATTTAACTCCTTTATTATG+AGG 0.308361 3_1:+93849439 Msa0389210:three_prime_UTR
ATCGTTTGGGTTGATCATTT+TGG 0.317091 3_1:-93848204 None:intergenic
TGTCATTCGCAGGTTGGTTT+CGG 0.334584 3_1:-93849210 None:intergenic
TCGGAGAATCAATCAGAAAA+AGG 0.335779 3_1:+93848302 Msa0389210:CDS
TCCGAACTAACTCTTGGTTT+TGG 0.336462 3_1:-93848284 None:intergenic
TTGTCGAAATAAACTGTATA+AGG 0.343438 3_1:-93848158 None:intergenic
CTGGTAGAGATAGTCCTTCT+TGG 0.350219 3_1:+93848522 Msa0389210:CDS
CCTTCCCAATTGCCAAACTT+TGG 0.350561 3_1:-93848122 None:intergenic
CTCGATTAACCGGTCTCAAT+CGG 0.362293 3_1:-93848592 None:intergenic
TAATAAAGGAGTTAAATTAT+AGG 0.374519 3_1:-93849434 None:intergenic
GTTAACTCGCCGGCTCGTCC+TGG 0.387058 3_1:+93848389 Msa0389210:CDS
GGTCTCAATCGGGATCTTCC+AGG 0.388968 3_1:-93848581 None:intergenic
CTAGCAGTACTTTGTCTTGA+AGG 0.389113 3_1:-93848449 None:intergenic
GAGTTAAACTAAACTAGAAC+TGG 0.396098 3_1:-93849864 None:intergenic
AAATACACCCCTCATAATAA+AGG 0.408408 3_1:-93849448 None:intergenic
ATGTTCCAAAGTTTGGCAAT+TGG 0.415742 3_1:+93848117 Msa0389210:CDS
TGTTCCAAAGTTTGGCAATT+GGG 0.422530 3_1:+93848118 Msa0389210:CDS
AGTGCTGCTGTTCCAAAGTT+TGG 0.426330 3_1:+93849061 Msa0389210:CDS
GAGGAGAAGCACGTTGCGGC+TGG 0.428563 3_1:+93849148 Msa0389210:CDS
CCGGCTCGTCCTGGAGGTCA+TGG 0.432822 3_1:+93848398 Msa0389210:CDS
TCCAAAACCAAGAGTTAGTT+CGG 0.438652 3_1:+93848283 Msa0389210:CDS
TCATCCCACTCACCAAACTT+TGG 0.439708 3_1:-93849073 None:intergenic
ATGCACCAGGCACACCCAAC+GGG 0.439756 3_1:+93849173 Msa0389210:CDS
GATCTCCCGTTGGGTGTGCC+TGG 0.452434 3_1:-93849178 None:intergenic
TCGATTAACCGGTCTCAATC+GGG 0.454767 3_1:-93848591 None:intergenic
ATTTAACTCCTTTATTATGA+GGG 0.460439 3_1:+93849440 Msa0389210:three_prime_UTR
TGGTAGAGATAGTCCTTCTT+GGG 0.468532 3_1:+93848523 Msa0389210:CDS
TGATTCTCCGAACTAACTCT+TGG 0.475335 3_1:-93848290 None:intergenic
CAGTTTATTTCGACAAAGCT+CGG 0.484974 3_1:+93848165 Msa0389210:CDS
ACCTGAGCTTTGTCATTCGC+AGG 0.492598 3_1:-93849220 None:intergenic
CCAAAGTTTGGCAATTGGGA+AGG 0.497311 3_1:+93848122 Msa0389210:CDS
ACGTTCACCTCTTCATCGCC+AGG 0.506105 3_1:+93848490 Msa0389210:CDS
GTATAGCCATCAGCAGATGC+AGG 0.507216 3_1:-93849103 None:intergenic
ATTGAGTCTTTGAAACTGTA+CGG 0.510484 3_1:+93845575 Msa0389210:five_prime_UTR
CATCGCCAGGCTAAAACTCC+TGG 0.514302 3_1:+93848503 Msa0389210:CDS
GTACTCTTTCCTTCCCAAGA+AGG 0.526369 3_1:-93848536 None:intergenic
GATAAGAATAGTGTTGTGAA+TGG 0.538931 3_1:+93849392 Msa0389210:three_prime_UTR
GAGCTTTGTCATTCGCAGGT+TGG 0.539046 3_1:-93849216 None:intergenic
ATAACATATGATCTCCCGTT+GGG 0.539515 3_1:-93849187 None:intergenic
CAAGAAGGACTATCTCTACC+AGG 0.547661 3_1:-93848521 None:intergenic
CGTCCTGGAGGTCATGGAGT+AGG 0.551535 3_1:+93848404 Msa0389210:CDS
GACAGCAGTCATGGTACACC+TGG 0.555414 3_1:+93848563 Msa0389210:CDS
TGTTCCAAAGTTTGGTGAGT+GGG 0.555787 3_1:+93849069 Msa0389210:CDS
CACTTTGAAGAGTGAAGTGC+GGG 0.556334 3_1:-93849566 None:intergenic
TGGAAGATCCCGATTGAGAC+CGG 0.561277 3_1:+93848583 Msa0389210:CDS
TAAGCATTCTGTTAACTCGC+CGG 0.562363 3_1:+93848379 Msa0389210:CDS
CCATGACCTCCAGGACGAGC+CGG 0.565142 3_1:-93848398 None:intergenic
TTTAACTCCTTTATTATGAG+GGG 0.566344 3_1:+93849441 Msa0389210:three_prime_UTR
AATGCACCAGGCACACCCAA+CGG 0.568490 3_1:+93849172 Msa0389210:CDS
AGTGACCCTGCATCTGCTGA+TGG 0.581402 3_1:+93849097 Msa0389210:CDS
GAACCTACTCCATGACCTCC+AGG 0.583850 3_1:-93848407 None:intergenic
TTACTTATCAAATTAAAGGA+AGG 0.584747 3_1:-93849708 None:intergenic
CTGTTCCAAAGTTTGGTGAG+TGG 0.599037 3_1:+93849068 Msa0389210:CDS
TCTACAAAAGAACAAGGAGG+AGG 0.599395 3_1:+93848349 Msa0389210:intron
GTTGCGGCTGGAAATGCACC+AGG 0.599588 3_1:+93849160 Msa0389210:CDS
AACTCGCCGGCTCGTCCTGG+AGG 0.599986 3_1:+93848392 Msa0389210:CDS
AGAGATAGTCCTTCTTGGGA+AGG 0.600332 3_1:+93848527 Msa0389210:CDS
AGTACATATGACAGCAGTCA+TGG 0.601803 3_1:+93848554 Msa0389210:CDS
TGCGGAATTACAACTGTCAA+CGG 0.606769 3_1:+93849484 Msa0389210:three_prime_UTR
AAGGAGTTAAATTATAGGAG+TGG 0.610154 3_1:-93849429 None:intergenic
ACTTCTGCGATGTTTATCCT+CGG 0.613834 3_1:-93849654 None:intergenic
TTTGTCTTGAAGGTCTTCTG+CGG 0.623940 3_1:-93848439 None:intergenic
ACCTGCGAATGACAAAGCTC+AGG 0.626820 3_1:+93849219 Msa0389210:CDS
AAAGCTCGGAAAAGTCGACC+TGG 0.630252 3_1:+93848179 Msa0389210:CDS
TATAGCCATCAGCAGATGCA+GGG 0.631221 3_1:-93849102 None:intergenic
CTACAAAAGAACAAGGAGGA+GGG 0.656438 3_1:+93848350 Msa0389210:intron
GATAACATATGATCTCCCGT+TGG 0.663475 3_1:-93849188 None:intergenic
TTTAAGGCTCTCTCTGTCCG+AGG 0.665829 3_1:+93849637 Msa0389210:three_prime_UTR
AATTTAGATCCTCTAAAGTG+AGG 0.666117 3_1:-93849593 None:intergenic
AAATTAAAGGAAGGTACACG+TGG 0.668784 3_1:-93849699 None:intergenic
GGGATATAAATTCAAGACAA+CGG 0.674903 3_1:-93849678 None:intergenic
GATCAACCCAAACGATCCTG+AGG 0.674934 3_1:+93848211 Msa0389210:CDS
GCGTGAGGAGAAGCACGTTG+CGG 0.685597 3_1:+93849144 Msa0389210:CDS
GCACTTTGAAGAGTGAAGTG+CGG 0.694094 3_1:-93849567 None:intergenic
AATTAAAGGAAGGTACACGT+GGG 0.720032 3_1:-93849698 None:intergenic
TAGTGTTGTGAATGGTCGTG+AGG 0.720734 3_1:+93849400 Msa0389210:three_prime_UTR
GAGTCTTTGAAACTGTACGG+AGG 0.738870 3_1:+93845578 Msa0389210:five_prime_UTR
CGATCTACAAAAGAACAAGG+AGG 0.753407 3_1:+93848346 Msa0389210:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAGTATATTTTTATAGTTT+AGG + chr3_1:93847045-93847064 Msa0389210:intron 10.0%
!!! TAGTATATTTTTATAGTTTA+GGG + chr3_1:93847046-93847065 Msa0389210:intron 10.0%
!!! TGATTAGTTTTTTTCATTAT+CGG + chr3_1:93846358-93846377 Msa0389210:intron 15.0%
!!! TGGTATATTTTTATAGTTTA+GGG - chr3_1:93846898-93846917 None:intergenic 15.0%
!!! TTGGTATATTTTTATAGTTT+AGG - chr3_1:93846899-93846918 None:intergenic 15.0%
!!! ATTCAAGAATAGTTTTAAAA+AGG + chr3_1:93847619-93847638 Msa0389210:intron 15.0%
!! AAAAAAAAAATCAGTTGTAA+AGG - chr3_1:93848678-93848697 None:intergenic 15.0%
!! TAATAAAGGAGTTAAATTAT+AGG - chr3_1:93849437-93849456 None:intergenic 15.0%
!! CGTTTATATGTAAATATTTA+AGG + chr3_1:93849621-93849640 Msa0389210:three_prime_UTR 15.0%
!!! AATTCATCTCTACAATTTTT+GGG + chr3_1:93845676-93845695 Msa0389210:five_prime_UTR 20.0%
!!! TGTTATGTTGAAACTATTTT+AGG + chr3_1:93845811-93845830 Msa0389210:intron 20.0%
!!! TTGAAACTATTTTAGGAAAA+GGG + chr3_1:93845818-93845837 Msa0389210:intron 20.0%
!! AGCAATTCAATTAGAATTAT+GGG + chr3_1:93846013-93846032 Msa0389210:intron 20.0%
!!! ATGATTTTCTTAGTTTATGA+TGG + chr3_1:93846044-93846063 Msa0389210:intron 20.0%
!!! ATTTAACTTCGTTTTATGAA+TGG + chr3_1:93846099-93846118 Msa0389210:intron 20.0%
!! GAATTCGTAAATATAATTCT+TGG + chr3_1:93846195-93846214 Msa0389210:intron 20.0%
!!! ATAGCAACATTATATTTTCA+CGG - chr3_1:93846421-93846440 None:intergenic 20.0%
!! ATTATGCTTTCATAAAGAAA+TGG + chr3_1:93846722-93846741 Msa0389210:intron 20.0%
!! ATTCAATTAATGAAGTTGTT+GGG - chr3_1:93846828-93846847 None:intergenic 20.0%
!!! ATGGATTTTCATATACTTTA+GGG - chr3_1:93846958-93846977 None:intergenic 20.0%
!! TATATGAAAATCCATCAATT+TGG + chr3_1:93846963-93846982 Msa0389210:intron 20.0%
!!! TAAAATTTTCTTTAATCTCC+AGG - chr3_1:93847143-93847162 None:intergenic 20.0%
!! GTAATACTATTATTTGTTCT+CGG + chr3_1:93847281-93847300 Msa0389210:intron 20.0%
!! GTAGACATAACTTATAATTA+AGG + chr3_1:93847482-93847501 Msa0389210:intron 20.0%
!! AATGGATATAAATGAGTAAA+TGG + chr3_1:93847924-93847943 Msa0389210:intron 20.0%
!! TCTTTACAATAAATAGACAA+GGG - chr3_1:93848769-93848788 None:intergenic 20.0%
!! AATTTAACTCCTTTATTATG+AGG + chr3_1:93849439-93849458 Msa0389210:three_prime_UTR 20.0%
!! ATTTAACTCCTTTATTATGA+GGG + chr3_1:93849440-93849459 Msa0389210:three_prime_UTR 20.0%
!! TTACTTATCAAATTAAAGGA+AGG - chr3_1:93849711-93849730 None:intergenic 20.0%
!!! GAAAAATTGAATTTAAAGTG+TGG - chr3_1:93849778-93849797 None:intergenic 20.0%
!! TTGAAGAAAGTTGAGATTTT+TGG - chr3_1:93845655-93845674 None:intergenic 25.0%
!! CAATTCATCTCTACAATTTT+TGG + chr3_1:93845675-93845694 Msa0389210:five_prime_UTR 25.0%
!! TTTTGTCTTTGATCATTGTT+TGG + chr3_1:93845759-93845778 Msa0389210:intron 25.0%
!!! GTTGAAACTATTTTAGGAAA+AGG + chr3_1:93845817-93845836 Msa0389210:intron 25.0%
! GAGCAATTCAATTAGAATTA+TGG + chr3_1:93846012-93846031 Msa0389210:intron 25.0%
!!! ATGGATTTGTTTTGTTTTCA+TGG + chr3_1:93846118-93846137 Msa0389210:intron 25.0%
! TATACATGTAGCTTATAAGT+TGG - chr3_1:93846543-93846562 None:intergenic 25.0%
! TATAAGCTACATGTATATGT+TGG + chr3_1:93846546-93846565 Msa0389210:intron 25.0%
! GTGATCTCATTATATGATTA+CGG + chr3_1:93846744-93846763 Msa0389210:intron 25.0%
!! TCAAGATAACTTTGTTTCTT+TGG + chr3_1:93846769-93846788 Msa0389210:intron 25.0%
! TTCAATTAATGAAGTTGTTG+GGG - chr3_1:93846827-93846846 None:intergenic 25.0%
! CATTCAATTAATGAAGTTGT+TGG - chr3_1:93846829-93846848 None:intergenic 25.0%
! TAGTTTAGGAACTAAATTGA+TGG - chr3_1:93846854-93846873 None:intergenic 25.0%
!!! GATGGATTTTCATATACTTT+AGG - chr3_1:93846959-93846978 None:intergenic 25.0%
! TTATAGTTTAGGGACTAAAT+CGG + chr3_1:93847056-93847075 Msa0389210:intron 25.0%
!! AATTTTATATAACAGGGCAA+TGG + chr3_1:93847203-93847222 Msa0389210:intron 25.0%
! TTTCTAGATCAATCTTAGAA+TGG + chr3_1:93847906-93847925 Msa0389210:intron 25.0%
! AATAGGTAAATAATAGAGCA+AGG - chr3_1:93847972-93847991 None:intergenic 25.0%
! CCAAAATCAGAGTTAATAAT+AGG - chr3_1:93847989-93848008 None:intergenic 25.0%
!! CCTATTATTAACTCTGATTT+TGG + chr3_1:93847986-93848005 Msa0389210:intron 25.0%
! CAACAAAAATACTGTAATAC+AGG - chr3_1:93848042-93848061 None:intergenic 25.0%
! CTCTTCAATTTGTGTTAATT+TGG + chr3_1:93848081-93848100 Msa0389210:intron 25.0%
! TTGTCGAAATAAACTGTATA+AGG - chr3_1:93848161-93848180 None:intergenic 25.0%
!!! GAATTTTGAAGAACTAAATC+TGG - chr3_1:93848242-93848261 None:intergenic 25.0%
! AAAAATCAGTTGTAAAGGAA+CGG - chr3_1:93848673-93848692 None:intergenic 25.0%
! CTCTTTACAATAAATAGACA+AGG - chr3_1:93848770-93848789 None:intergenic 25.0%
! AATAAGATAATAAACAGCCA+AGG + chr3_1:93848802-93848821 Msa0389210:intron 25.0%
!!! GTTTTTTTCAATTATAGCCT+TGG - chr3_1:93848822-93848841 None:intergenic 25.0%
! AAACTCAAATCATTTGTGAA+GGG - chr3_1:93849002-93849021 None:intergenic 25.0%
! AAAACTCAAATCATTTGTGA+AGG - chr3_1:93849003-93849022 None:intergenic 25.0%
! TTTAACTCCTTTATTATGAG+GGG + chr3_1:93849441-93849460 Msa0389210:three_prime_UTR 25.0%
!!! TATTTTTAAAGGGTAAAGTG+CGG + chr3_1:93849466-93849485 Msa0389210:three_prime_UTR 25.0%
! GTGCTTACTTATCAAATTAA+AGG - chr3_1:93849715-93849734 None:intergenic 25.0%
!! ATTGAGTCTTTGAAACTGTA+CGG + chr3_1:93845575-93845594 Msa0389210:five_prime_UTR 30.0%
!!! AGAAAGTTGAGATTTTTGGT+TGG - chr3_1:93845651-93845670 None:intergenic 30.0%
AAAGAGAAAAAAACTCACTG+TGG - chr3_1:93845728-93845747 None:intergenic 30.0%
!! AACTATTTTAGGAAAAGGGT+AGG + chr3_1:93845822-93845841 Msa0389210:intron 30.0%
AACTAAGAAAATCATCACAC+AGG - chr3_1:93846039-93846058 None:intergenic 30.0%
AGGCTAATACAAATACATCT+TGG - chr3_1:93846161-93846180 None:intergenic 30.0%
!! ATTAGCCTTGTTAGAAAAAC+AGG + chr3_1:93846173-93846192 Msa0389210:intron 30.0%
!! GAATTCCTGTTTTTCTAACA+AGG - chr3_1:93846181-93846200 None:intergenic 30.0%
GAAGTTGTTACATATTCACA+CGG - chr3_1:93846387-93846406 None:intergenic 30.0%
! TGTTGCTATTGTAGAAATGT+AGG + chr3_1:93846432-93846451 Msa0389210:intron 30.0%
!!! TTCGTTTTTTGTCTACCTTA+AGG - chr3_1:93846518-93846537 None:intergenic 30.0%
AACAAAAACTTTAACCTTGC+AGG + chr3_1:93846610-93846629 Msa0389210:intron 30.0%
TGTATAGTTTAGGGACTATT+TGG - chr3_1:93846918-93846937 None:intergenic 30.0%
!! GACGGATTTTGTATAGTTTA+GGG - chr3_1:93846927-93846946 None:intergenic 30.0%
!!! TGACGGATTTTGTATAGTTT+AGG - chr3_1:93846928-93846947 None:intergenic 30.0%
CTATACAAAATCCGTCAATT+TGG + chr3_1:93846931-93846950 Msa0389210:intron 30.0%
!! TGATGGATTGCATATAGTTT+AGG + chr3_1:93847016-93847035 Msa0389210:intron 30.0%
!! GATGGATTGCATATAGTTTA+GGG + chr3_1:93847017-93847036 Msa0389210:intron 30.0%
TTTCTTTAATCTCCAGGAAA+AGG - chr3_1:93847137-93847156 None:intergenic 30.0%
! TTGCTTTACAATAGAGCATT+TGG + chr3_1:93847173-93847192 Msa0389210:intron 30.0%
GGAAGTTGTTTGAATGTTAA+TGG + chr3_1:93847331-93847350 Msa0389210:intron 30.0%
GTTATGTCTACTTACTACAA+TGG - chr3_1:93847473-93847492 None:intergenic 30.0%
TTCATTATGTTGTCTGTTTC+TGG + chr3_1:93847533-93847552 Msa0389210:intron 30.0%
CTTTCATGTTATATACCGAA+AGG - chr3_1:93847689-93847708 None:intergenic 30.0%
! TCATGTTTTCTGAATTCTAG+AGG + chr3_1:93847801-93847820 Msa0389210:intron 30.0%
! CATGTTTTCTGAATTCTAGA+GGG + chr3_1:93847802-93847821 Msa0389210:intron 30.0%
! TTGTTGAAACTTGACTTGAT+AGG + chr3_1:93848056-93848075 Msa0389210:intron 30.0%
TAACGATCTACAAAAGAACA+AGG + chr3_1:93848343-93848362 Msa0389210:intron 30.0%
ATTTCATCATCTCGATTAAC+CGG - chr3_1:93848605-93848624 None:intergenic 30.0%
AACCTTAAACGCTCTTAAAA+AGG + chr3_1:93848897-93848916 Msa0389210:intron 30.0%
!!! TTCCTTTTTAAGAGCGTTTA+AGG - chr3_1:93848902-93848921 None:intergenic 30.0%
!! GTGTTTTTATGACTCTGATT+TGG + chr3_1:93849026-93849045 Msa0389210:intron 30.0%
TTTATCACGTCTTAATAAGC+AGG - chr3_1:93849258-93849277 None:intergenic 30.0%
GATAAGAATAGTGTTGTGAA+TGG + chr3_1:93849392-93849411 Msa0389210:three_prime_UTR 30.0%
AAGGAGTTAAATTATAGGAG+TGG - chr3_1:93849432-93849451 None:intergenic 30.0%
AAATACACCCCTCATAATAA+AGG - chr3_1:93849451-93849470 None:intergenic 30.0%
!! TATGAGGGGTGTATTTTTAA+AGG + chr3_1:93849455-93849474 Msa0389210:three_prime_UTR 30.0%
!! ATGAGGGGTGTATTTTTAAA+GGG + chr3_1:93849456-93849475 Msa0389210:three_prime_UTR 30.0%
!! AATTTAGATCCTCTAAAGTG+AGG - chr3_1:93849596-93849615 None:intergenic 30.0%
GGGATATAAATTCAAGACAA+CGG - chr3_1:93849681-93849700 None:intergenic 30.0%
ACACTGACACATGACTATAT+TGG + chr3_1:93845940-93845959 Msa0389210:intron 35.0%
TTGAATTGCTCTACCAAACA+CGG - chr3_1:93846003-93846022 None:intergenic 35.0%
ACGAAGTTAAATTTCGAGCA+CGG - chr3_1:93846091-93846110 None:intergenic 35.0%
AAGATGCTTCAACATCTCTT+GGG - chr3_1:93846469-93846488 None:intergenic 35.0%
AAAGATGCTTCAACATCTCT+TGG - chr3_1:93846470-93846489 None:intergenic 35.0%
CTTAAGGCAATTGTTGTAGA+CGG - chr3_1:93846502-93846521 None:intergenic 35.0%
AGCTACATGTATATGTTGGA+TGG + chr3_1:93846550-93846569 Msa0389210:intron 35.0%
TGAAGAGAGAGTGATAGTTT+AGG - chr3_1:93846868-93846887 None:intergenic 35.0%
! TACTTTAGGGACCAAATTGA+CGG - chr3_1:93846945-93846964 None:intergenic 35.0%
AATACCAGGGACTAAATTGA+TGG + chr3_1:93846999-93847018 Msa0389210:intron 35.0%
TAGTTCAGGGACTAAATTGA+TGG + chr3_1:93847090-93847109 Msa0389210:intron 35.0%
AGTAGTAATGAAGAACTGTC+TGG + chr3_1:93847310-93847329 Msa0389210:intron 35.0%
!! TGGTATTCTAAGATGTCTCT+TGG - chr3_1:93847453-93847472 None:intergenic 35.0%
! TAACCGTGTCTTTTTCCTTT+CGG + chr3_1:93847671-93847690 Msa0389210:intron 35.0%
ATACCGAAAGGAAAAAGACA+CGG - chr3_1:93847677-93847696 None:intergenic 35.0%
! TTCTGAATTCTAGAGGGAAA+TGG + chr3_1:93847808-93847827 Msa0389210:intron 35.0%
! TGCAGTGTTAAATTTTGCGT+TGG + chr3_1:93847867-93847886 Msa0389210:intron 35.0%
! AGTGTTAAATTTTGCGTTGG+TGG + chr3_1:93847870-93847889 Msa0389210:intron 35.0%
!!! ATTTTGCGTTGGTGGTAAAT+TGG + chr3_1:93847878-93847897 Msa0389210:intron 35.0%
!! ACTCTGATTTTGGTACAAGA+AGG + chr3_1:93847996-93848015 Msa0389210:intron 35.0%
ATGTTCCAAAGTTTGGCAAT+TGG + chr3_1:93848117-93848136 Msa0389210:CDS 35.0%
TGTTCCAAAGTTTGGCAATT+GGG + chr3_1:93848118-93848137 Msa0389210:CDS 35.0%
CAGTTTATTTCGACAAAGCT+CGG + chr3_1:93848165-93848184 Msa0389210:CDS 35.0%
!!! ATCGTTTGGGTTGATCATTT+TGG - chr3_1:93848207-93848226 None:intergenic 35.0%
! ACTAAATCTGGATTTTCCTC+AGG - chr3_1:93848230-93848249 None:intergenic 35.0%
TCCAAAACCAAGAGTTAGTT+CGG + chr3_1:93848283-93848302 Msa0389210:CDS 35.0%
TCGGAGAATCAATCAGAAAA+AGG + chr3_1:93848302-93848321 Msa0389210:CDS 35.0%
ATAACATATGATCTCCCGTT+GGG - chr3_1:93849190-93849209 None:intergenic 35.0%
!! TTCTCATTCTTGGTTTTCCA+GGG + chr3_1:93849304-93849323 Msa0389210:intron 35.0%
! AATTAAAGGAAGGTACACGT+GGG - chr3_1:93849701-93849720 None:intergenic 35.0%
! AAATTAAAGGAAGGTACACG+TGG - chr3_1:93849702-93849721 None:intergenic 35.0%
!!! GAGATTTTTGGTTGGATCAG+AGG - chr3_1:93845643-93845662 None:intergenic 40.0%
! ACACTTTCAATCTGAGGTGT+CGG - chr3_1:93845897-93845916 None:intergenic 40.0%
TATGAGTTTGTGTCCGTGTT+TGG + chr3_1:93845987-93846006 Msa0389210:intron 40.0%
CAGAAAAAACAAGCAGCTTG+TGG + chr3_1:93846229-93846248 Msa0389210:intron 40.0%
CGTCTACAACAATTGCCTTA+AGG + chr3_1:93846500-93846519 Msa0389210:intron 40.0%
CTGAACTGATGTCATAACAG+AGG + chr3_1:93846586-93846605 Msa0389210:intron 40.0%
TCTCTTAACTCTATCCTGCA+AGG - chr3_1:93846627-93846646 None:intergenic 40.0%
CTTGCTGAAAAGTTAGATCG+AGG + chr3_1:93846647-93846666 Msa0389210:intron 40.0%
! GATTTTGAGCGCCAAATTGA+TGG - chr3_1:93846977-93846996 None:intergenic 40.0%
CGCTCAAAATCTCAATACCA+GGG + chr3_1:93846986-93847005 Msa0389210:intron 40.0%
CAATCCATCAATTTAGTCCC+TGG - chr3_1:93847006-93847025 None:intergenic 40.0%
! ATTAATTCCCAGCCTTTTCC+TGG + chr3_1:93847122-93847141 Msa0389210:intron 40.0%
TTAATCTCCAGGAAAAGGCT+GGG - chr3_1:93847132-93847151 None:intergenic 40.0%
TTTAATCTCCAGGAAAAGGC+TGG - chr3_1:93847133-93847152 None:intergenic 40.0%
CTATTATTTGTTCTCGGCTC+TGG + chr3_1:93847287-93847306 Msa0389210:intron 40.0%
!! TGTCTGTTTCTGGACCAATA+TGG + chr3_1:93847543-93847562 Msa0389210:intron 40.0%
! GAATTCTAGAGGGAAATGGA+TGG + chr3_1:93847812-93847831 Msa0389210:intron 40.0%
CGTTCTCATGTTCCAAAGTT+TGG + chr3_1:93848110-93848129 Msa0389210:CDS 40.0%
! GATTTTCCTCAGGATCGTTT+GGG - chr3_1:93848220-93848239 None:intergenic 40.0%
!!! GAACTAACTCTTGGTTTTGG+AGG - chr3_1:93848284-93848303 None:intergenic 40.0%
! TCCGAACTAACTCTTGGTTT+TGG - chr3_1:93848287-93848306 None:intergenic 40.0%
TGATTCTCCGAACTAACTCT+TGG - chr3_1:93848293-93848312 None:intergenic 40.0%
CGATCTACAAAAGAACAAGG+AGG + chr3_1:93848346-93848365 Msa0389210:intron 40.0%
TCTACAAAAGAACAAGGAGG+AGG + chr3_1:93848349-93848368 Msa0389210:intron 40.0%
CTACAAAAGAACAAGGAGGA+GGG + chr3_1:93848350-93848369 Msa0389210:intron 40.0%
TAAGCATTCTGTTAACTCGC+CGG + chr3_1:93848379-93848398 Msa0389210:CDS 40.0%
TTTGTCTTGAAGGTCTTCTG+CGG - chr3_1:93848442-93848461 None:intergenic 40.0%
CTAGCAGTACTTTGTCTTGA+AGG - chr3_1:93848452-93848471 None:intergenic 40.0%
TGGTAGAGATAGTCCTTCTT+GGG + chr3_1:93848523-93848542 Msa0389210:CDS 40.0%
AGTACATATGACAGCAGTCA+TGG + chr3_1:93848554-93848573 Msa0389210:CDS 40.0%
ATCAGTTGTAAAGGAACGGA+GGG - chr3_1:93848669-93848688 None:intergenic 40.0%
AATCAGTTGTAAAGGAACGG+AGG - chr3_1:93848670-93848689 None:intergenic 40.0%
! TGTTCCAAAGTTTGGTGAGT+GGG + chr3_1:93849069-93849088 Msa0389210:CDS 40.0%
! CATTTTCAACAAAGTGCGTG+AGG + chr3_1:93849129-93849148 Msa0389210:CDS 40.0%
GATAACATATGATCTCCCGT+TGG - chr3_1:93849191-93849210 None:intergenic 40.0%
!! GAAGTGATGAAGCATCGATA+TGG - chr3_1:93849287-93849306 None:intergenic 40.0%
GCTTCATCACTTCTCATTCT+TGG + chr3_1:93849294-93849313 Msa0389210:intron 40.0%
!! CTTCTCATTCTTGGTTTTCC+AGG + chr3_1:93849303-93849322 Msa0389210:intron 40.0%
TGCGGAATTACAACTGTCAA+CGG + chr3_1:93849484-93849503 Msa0389210:three_prime_UTR 40.0%
ACTTCTGCGATGTTTATCCT+CGG - chr3_1:93849657-93849676 None:intergenic 40.0%
!! GAGTCTTTGAAACTGTACGG+AGG + chr3_1:93845578-93845597 Msa0389210:five_prime_UTR 45.0%
AACTGTACGGAGGAGTTTGT+TGG + chr3_1:93845588-93845607 Msa0389210:intron 45.0%
! ACTGTACGGAGGAGTTTGTT+GGG + chr3_1:93845589-93845608 Msa0389210:intron 45.0%
CCAGACACACTTTCAATCTG+AGG - chr3_1:93845903-93845922 None:intergenic 45.0%
! CCTCAGATTGAAAGTGTGTC+TGG + chr3_1:93845900-93845919 Msa0389210:intron 45.0%
CATAGCAAACTGCGAACAAC+AGG - chr3_1:93846798-93846817 None:intergenic 45.0%
GCGCTCAAAATCTCAATACC+AGG + chr3_1:93846985-93847004 Msa0389210:intron 45.0%
TTAGGGACTAAATCGGTGAG+AGG + chr3_1:93847063-93847082 Msa0389210:intron 45.0%
!! GGTGAGAGGTTGATAGTTCA+GGG + chr3_1:93847077-93847096 Msa0389210:intron 45.0%
ATAAGCCCTTGCAGCCATAT+TGG - chr3_1:93847560-93847579 None:intergenic 45.0%
CCTTCCCAATTGCCAAACTT+TGG - chr3_1:93848125-93848144 None:intergenic 45.0%
CCAAAGTTTGGCAATTGGGA+AGG + chr3_1:93848122-93848141 Msa0389210:CDS 45.0%
! GGATTTTCCTCAGGATCGTT+TGG - chr3_1:93848221-93848240 None:intergenic 45.0%
CAAGAAGGACTATCTCTACC+AGG - chr3_1:93848524-93848543 None:intergenic 45.0%
CTGGTAGAGATAGTCCTTCT+TGG + chr3_1:93848522-93848541 Msa0389210:CDS 45.0%
AGAGATAGTCCTTCTTGGGA+AGG + chr3_1:93848527-93848546 Msa0389210:CDS 45.0%
GTACTCTTTCCTTCCCAAGA+AGG - chr3_1:93848539-93848558 None:intergenic 45.0%
TCGATTAACCGGTCTCAATC+GGG - chr3_1:93848594-93848613 None:intergenic 45.0%
CTCGATTAACCGGTCTCAAT+CGG - chr3_1:93848595-93848614 None:intergenic 45.0%
! GGAACAGCAGCACTTTTATC+AGG - chr3_1:93849055-93849074 None:intergenic 45.0%
! AGTGCTGCTGTTCCAAAGTT+TGG + chr3_1:93849061-93849080 Msa0389210:CDS 45.0%
! CTGTTCCAAAGTTTGGTGAG+TGG + chr3_1:93849068-93849087 Msa0389210:CDS 45.0%
TCATCCCACTCACCAAACTT+TGG - chr3_1:93849076-93849095 None:intergenic 45.0%
TATAGCCATCAGCAGATGCA+GGG - chr3_1:93849105-93849124 None:intergenic 45.0%
!! TGTCATTCGCAGGTTGGTTT+CGG - chr3_1:93849213-93849232 None:intergenic 45.0%
TAGTGTTGTGAATGGTCGTG+AGG + chr3_1:93849400-93849419 Msa0389210:three_prime_UTR 45.0%
! CACTTTGAAGAGTGAAGTGC+GGG - chr3_1:93849569-93849588 None:intergenic 45.0%
! GCACTTTGAAGAGTGAAGTG+CGG - chr3_1:93849570-93849589 None:intergenic 45.0%
AAGTGCACACCTCACTTTAG+AGG + chr3_1:93849584-93849603 Msa0389210:three_prime_UTR 45.0%
!!! AATATTAAATTTTATATAAC+AGG + chr3_1:93847196-93847215 Msa0389210:intron 5.0%
!!! ATATTAAATTTTATATAACA+GGG + chr3_1:93847197-93847216 Msa0389210:intron 5.0%
!! CGGTGAGAGGTTGATAGTTC+AGG + chr3_1:93847076-93847095 Msa0389210:intron 50.0%
TCTGGACCAATATGGCTGCA+AGG + chr3_1:93847551-93847570 Msa0389210:intron 50.0%
CTGGACCAATATGGCTGCAA+GGG + chr3_1:93847552-93847571 Msa0389210:intron 50.0%
!! TTTTAGCTGACCCCACCATG+CGG + chr3_1:93847715-93847734 Msa0389210:intron 50.0%
!! AAGCCTTATTCCGCATGGTG+GGG - chr3_1:93847728-93847747 None:intergenic 50.0%
!! CAAGCCTTATTCCGCATGGT+GGG - chr3_1:93847729-93847748 None:intergenic 50.0%
!! TCAAGCCTTATTCCGCATGG+TGG - chr3_1:93847730-93847749 None:intergenic 50.0%
!! CCATCAAGCCTTATTCCGCA+TGG - chr3_1:93847733-93847752 None:intergenic 50.0%
CCATGCGGAATAAGGCTTGA+TGG + chr3_1:93847730-93847749 Msa0389210:intron 50.0%
AAAGCTCGGAAAAGTCGACC+TGG + chr3_1:93848179-93848198 Msa0389210:CDS 50.0%
!!! GGGTTGATCATTTTGGAGCC+AGG - chr3_1:93848200-93848219 None:intergenic 50.0%
GATCAACCCAAACGATCCTG+AGG + chr3_1:93848211-93848230 Msa0389210:CDS 50.0%
!! GTTTTAGCCTGGCGATGAAG+AGG - chr3_1:93848500-93848519 None:intergenic 50.0%
!! CTCTACCAGGAGTTTTAGCC+TGG - chr3_1:93848511-93848530 None:intergenic 50.0%
TGGAAGATCCCGATTGAGAC+CGG + chr3_1:93848583-93848602 Msa0389210:CDS 50.0%
! GAGGGAGTACGTGATAGAAC+AGG - chr3_1:93848651-93848670 None:intergenic 50.0%
GTATAGCCATCAGCAGATGC+AGG - chr3_1:93849106-93849125 None:intergenic 50.0%
! GAGCTTTGTCATTCGCAGGT+TGG - chr3_1:93849219-93849238 None:intergenic 50.0%
ACCTGCGAATGACAAAGCTC+AGG + chr3_1:93849219-93849238 Msa0389210:CDS 50.0%
! ACCTGAGCTTTGTCATTCGC+AGG - chr3_1:93849223-93849242 None:intergenic 50.0%
!!! TCCAGGGTTGCTGCTTTTTC+TGG + chr3_1:93849320-93849339 Msa0389210:intron 50.0%
!!! CCAGGGTTGCTGCTTTTTCT+GGG + chr3_1:93849321-93849340 Msa0389210:intron 50.0%
!!! CAGGGTTGCTGCTTTTTCTG+GGG + chr3_1:93849322-93849341 Msa0389210:intron 50.0%
! TTTAAGGCTCTCTCTGTCCG+AGG + chr3_1:93849637-93849656 Msa0389210:three_prime_UTR 50.0%
TGACCCCACCATGCGGAATA+AGG + chr3_1:93847722-93847741 Msa0389210:intron 55.0%
GAACCTACTCCATGACCTCC+AGG - chr3_1:93848410-93848429 None:intergenic 55.0%
ACGTTCACCTCTTCATCGCC+AGG + chr3_1:93848490-93848509 Msa0389210:CDS 55.0%
CATCGCCAGGCTAAAACTCC+TGG + chr3_1:93848503-93848522 Msa0389210:CDS 55.0%
GACAGCAGTCATGGTACACC+TGG + chr3_1:93848563-93848582 Msa0389210:CDS 55.0%
GGTCTCAATCGGGATCTTCC+AGG - chr3_1:93848584-93848603 None:intergenic 55.0%
AGTGACCCTGCATCTGCTGA+TGG + chr3_1:93849097-93849116 Msa0389210:CDS 55.0%
AATGCACCAGGCACACCCAA+CGG + chr3_1:93849172-93849191 Msa0389210:CDS 55.0%
CCCAGAAAAAGCAGCAACCC+TGG - chr3_1:93849324-93849343 None:intergenic 55.0%
CGTCCTGGAGGTCATGGAGT+AGG + chr3_1:93848404-93848423 Msa0389210:CDS 60.0%
! GCGTGAGGAGAAGCACGTTG+CGG + chr3_1:93849144-93849163 Msa0389210:CDS 60.0%
GTTGCGGCTGGAAATGCACC+AGG + chr3_1:93849160-93849179 Msa0389210:CDS 60.0%
ATGCACCAGGCACACCCAAC+GGG + chr3_1:93849173-93849192 Msa0389210:CDS 60.0%
!! GTTAACTCGCCGGCTCGTCC+TGG + chr3_1:93848389-93848408 Msa0389210:CDS 65.0%
CCATGACCTCCAGGACGAGC+CGG - chr3_1:93848401-93848420 None:intergenic 65.0%
! GAGGAGAAGCACGTTGCGGC+TGG + chr3_1:93849148-93849167 Msa0389210:CDS 65.0%
GATCTCCCGTTGGGTGTGCC+TGG - chr3_1:93849181-93849200 None:intergenic 65.0%
!! AACTCGCCGGCTCGTCCTGG+AGG + chr3_1:93848392-93848411 Msa0389210:CDS 70.0%
! CCGGCTCGTCCTGGAGGTCA+TGG + chr3_1:93848398-93848417 Msa0389210:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 93845549 93849878 93845549 ID=Msa0389210;Name=Msa0389210
chr3_1 mRNA 93845549 93849878 93845549 ID=Msa0389210-mRNA-1;Parent=Msa0389210;Name=Msa0389210-mRNA-1;_AED=0.05;_eAED=0.05;_QI=150|0.6|0.66|1|0.2|0.33|6|524|231
chr3_1 exon 93845549 93845602 93845549 ID=Msa0389210-mRNA-1:exon:26582;Parent=Msa0389210-mRNA-1
chr3_1 exon 93845625 93845729 93845625 ID=Msa0389210-mRNA-1:exon:26583;Parent=Msa0389210-mRNA-1
chr3_1 exon 93848107 93848328 93848107 ID=Msa0389210-mRNA-1:exon:26584;Parent=Msa0389210-mRNA-1
chr3_1 exon 93848359 93848604 93848359 ID=Msa0389210-mRNA-1:exon:26585;Parent=Msa0389210-mRNA-1
chr3_1 exon 93849052 93849240 93849052 ID=Msa0389210-mRNA-1:exon:26586;Parent=Msa0389210-mRNA-1
chr3_1 exon 93849325 93849878 93849325 ID=Msa0389210-mRNA-1:exon:26587;Parent=Msa0389210-mRNA-1
chr3_1 five_prime_UTR 93845549 93845602 93845549 ID=Msa0389210-mRNA-1:five_prime_utr;Parent=Msa0389210-mRNA-1
chr3_1 five_prime_UTR 93845625 93845720 93845625 ID=Msa0389210-mRNA-1:five_prime_utr;Parent=Msa0389210-mRNA-1
chr3_1 CDS 93845721 93845729 93845721 ID=Msa0389210-mRNA-1:cds;Parent=Msa0389210-mRNA-1
chr3_1 CDS 93848107 93848328 93848107 ID=Msa0389210-mRNA-1:cds;Parent=Msa0389210-mRNA-1
chr3_1 CDS 93848359 93848604 93848359 ID=Msa0389210-mRNA-1:cds;Parent=Msa0389210-mRNA-1
chr3_1 CDS 93849052 93849240 93849052 ID=Msa0389210-mRNA-1:cds;Parent=Msa0389210-mRNA-1
chr3_1 CDS 93849325 93849354 93849325 ID=Msa0389210-mRNA-1:cds;Parent=Msa0389210-mRNA-1
chr3_1 three_prime_UTR 93849355 93849878 93849355 ID=Msa0389210-mRNA-1:three_prime_utr;Parent=Msa0389210-mRNA-1
Gene Sequence

>Msa0389210

ATGACCACACAACGTTCTCATGTTCCAAAGTTTGGCAATTGGGAAGGCGAAGATGATGTTCCTTATACAGTTTATTTCGACAAAGCTCGGAAAAGTCGACCTGGCTCCAAAATGATCAACCCAAACGATCCTGAGGAAAATCCAGATTTAGTTCTTCAAAATTCATCTTCTGATGACGTAATTCCTCCAAAACCAAGAGTTAGTTCGGAGAATCAATCAGAAAAAGGAACAAACAAGGAGGAGGGTGATGTTAAGCATTCTGTTAACTCGCCGGCTCGTCCTGGAGGTCATGGAGTAGGTTCTGCTGATAGCCGCAGAAGACCTTCAAGACAAAGTACTGCTAGCTCAGAGTACAGTGTTGAACGTTCACCTCTTCATCGCCAGGCTAAAACTCCTGGTAGAGATAGTCCTTCTTGGGAAGGAAAGAGTACATATGACAGCAGTCATGGTACACCTGGAAGATCCCGATTGAGACCGCCTGATAAAAGTGCTGCTGTTCCAAAGTTTGGTGAGTGGGATGAGAGTGACCCTGCATCTGCTGATGGCTATACTCACATTTTCAACAAAGTGCGTGAGGAGAAGCACGTTGCGGCTGGAAATGCACCAGGCACACCCAACGGGAGATCATATGTTATCCGAAACCAACCTGCGAATGACAAAGCTCAGGGTTGCTGCTTTTTCTGGGGCAGAAAATGA

Protein sequence

>Msa0389210

MTTQRSHVPKFGNWEGEDDVPYTVYFDKARKSRPGSKMINPNDPEENPDLVLQNSSSDDVIPPKPRVSSENQSEKGTNKEEGDVKHSVNSPARPGGHGVGSADSRRRPSRQSTASSEYSVERSPLHRQAKTPGRDSPSWEGKSTYDSSHGTPGRSRLRPPDKSAAVPKFGEWDESDPASADGYTHIFNKVREEKHVAAGNAPGTPNGRSYVIRNQPANDKAQGCCFFWGRK*