AlfalfaGEDB | Msa0389210

M. sativa cultivar zhongmu-4 / Msa0389210

KEGG: K13456
GO: GO:0002218 GO:0002237 GO:0002253 GO:0002376 GO:0002682 GO:0002683 GO:0002684 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010204 GO:0010363 GO:0010941 GO:0012501 GO:0016020 GO:0016310 GO:0019538 GO:0019897 GO:0019898 GO:0023052 GO:0031347 GO:0031348 GO:0031349 GO:0033554 GO:0034050 GO:0034051 GO:0036211 GO:0042221 GO:0042742 GO:0043067 GO:0043069 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0045824 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050776 GO:0050777 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0080135 GO:0098542 GO:1901564
PFAM: PF05627.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0389210	XP_013448598.1	92.742	248	1	2	1	231	1	248	8.91e-162	457

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0389210	sp\|Q8GYN5\|RIN4_ARATH	40.650	246	90	12	5	231	3	211	6.38e-38	134

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0389210	B7FGR2	92.742	248	1	2	1	231	1	248	4.26e-162	457

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001830	Msa0389210	0.887300	1.610630e-72	-8.615850e-47
Msa0007440	Msa0389210	0.811787	5.879367e-51	-8.615850e-47
Msa0007470	Msa0389210	0.810698	1.013006e-50	-8.615850e-47
Msa0010490	Msa0389210	0.866588	2.555130e-65	-8.615850e-47
Msa0010500	Msa0389210	0.865937	4.110044e-65	-8.615850e-47
Msa0012710	Msa0389210	0.834511	2.873028e-56	-8.615850e-47
Msa0017320	Msa0389210	0.846740	1.796229e-59	-8.615850e-47
Msa0018070	Msa0389210	0.804796	1.819242e-49	-8.615850e-47
Msa0020390	Msa0389210	0.878837	2.032838e-69	-8.615850e-47
Msa0020410	Msa0389210	0.824686	7.055660e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0389210	MtrunA17_Chr7g0235641	92.742	248	1	2	1	231	1	248	8.20e-166	457
Msa0389210	MtrunA17_Chr8g0339841	65.900	261	57	7	2	231	1	260	1.10e-105	305

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0389210	AT3G25070.2	40.400	250	93	12	1	231	12	224	4.60e-40	137
Msa0389210	AT3G25070.1	40.650	246	90	12	5	231	3	211	6.49e-39	134

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Find 82 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTCGGAAAAGTCGACC+TGG	0.630252	3_1:+93848179	Msa0389210:CDS
AAATACACCCCTCATAATAA+AGG	0.408408	3_1:-93849448	None:intergenic
AAATTAAAGGAAGGTACACG+TGG	0.668784	3_1:-93849699	None:intergenic
AACTCGCCGGCTCGTCCTGG+AGG	0.599986	3_1:+93848392	Msa0389210:CDS
AAGGAGTTAAATTATAGGAG+TGG	0.610154	3_1:-93849429	None:intergenic
AAGTGCACACCTCACTTTAG+AGG	0.290403	3_1:+93849584	Msa0389210:three_prime_UTR
AATGCACCAGGCACACCCAA+CGG	0.568490	3_1:+93849172	Msa0389210:CDS
AATTAAAGGAAGGTACACGT+GGG	0.720032	3_1:-93849698	None:intergenic
AATTTAACTCCTTTATTATG+AGG	0.308361	3_1:+93849439	Msa0389210:three_prime_UTR
AATTTAGATCCTCTAAAGTG+AGG	0.666117	3_1:-93849593	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAGAAAAAAACTCACTG+TGG	-	chr3_1:93845728-93845747	None:intergenic	30.0%
AACTAAGAAAATCATCACAC+AGG	-	chr3_1:93846039-93846058	None:intergenic	30.0%
AGGCTAATACAAATACATCT+TGG	-	chr3_1:93846161-93846180	None:intergenic	30.0%
GAAGTTGTTACATATTCACA+CGG	-	chr3_1:93846387-93846406	None:intergenic	30.0%
AACAAAAACTTTAACCTTGC+AGG	+	chr3_1:93846610-93846629	Msa0389210:intron	30.0%
TGTATAGTTTAGGGACTATT+TGG	-	chr3_1:93846918-93846937	None:intergenic	30.0%
CTATACAAAATCCGTCAATT+TGG	+	chr3_1:93846931-93846950	Msa0389210:intron	30.0%
TTTCTTTAATCTCCAGGAAA+AGG	-	chr3_1:93847137-93847156	None:intergenic	30.0%
GGAAGTTGTTTGAATGTTAA+TGG	+	chr3_1:93847331-93847350	Msa0389210:intron	30.0%
GTTATGTCTACTTACTACAA+TGG	-	chr3_1:93847473-93847492	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	93845549	93849878	93845549	ID=Msa0389210;Name=Msa0389210
chr3_1	mRNA	93845549	93849878	93845549	ID=Msa0389210-mRNA-1;Parent=Msa0389210;Name=Msa0389210-mRNA-1;_AED=0.05;_eAED=0.05;_QI=150\|0.6\|0.66\|1\|0.2\|0.33\|6\|524\|231
chr3_1	exon	93845549	93845602	93845549	ID=Msa0389210-mRNA-1:exon:26582;Parent=Msa0389210-mRNA-1
chr3_1	exon	93845625	93845729	93845625	ID=Msa0389210-mRNA-1:exon:26583;Parent=Msa0389210-mRNA-1
chr3_1	exon	93848107	93848328	93848107	ID=Msa0389210-mRNA-1:exon:26584;Parent=Msa0389210-mRNA-1
chr3_1	exon	93848359	93848604	93848359	ID=Msa0389210-mRNA-1:exon:26585;Parent=Msa0389210-mRNA-1
chr3_1	exon	93849052	93849240	93849052	ID=Msa0389210-mRNA-1:exon:26586;Parent=Msa0389210-mRNA-1
chr3_1	exon	93849325	93849878	93849325	ID=Msa0389210-mRNA-1:exon:26587;Parent=Msa0389210-mRNA-1
chr3_1	five_prime_UTR	93845549	93845602	93845549	ID=Msa0389210-mRNA-1:five_prime_utr;Parent=Msa0389210-mRNA-1
chr3_1	five_prime_UTR	93845625	93845720	93845625	ID=Msa0389210-mRNA-1:five_prime_utr;Parent=Msa0389210-mRNA-1
chr3_1	CDS	93845721	93845729	93845721	ID=Msa0389210-mRNA-1:cds;Parent=Msa0389210-mRNA-1
chr3_1	CDS	93848107	93848328	93848107	ID=Msa0389210-mRNA-1:cds;Parent=Msa0389210-mRNA-1
chr3_1	CDS	93848359	93848604	93848359	ID=Msa0389210-mRNA-1:cds;Parent=Msa0389210-mRNA-1
chr3_1	CDS	93849052	93849240	93849052	ID=Msa0389210-mRNA-1:cds;Parent=Msa0389210-mRNA-1
chr3_1	CDS	93849325	93849354	93849325	ID=Msa0389210-mRNA-1:cds;Parent=Msa0389210-mRNA-1
chr3_1	three_prime_UTR	93849355	93849878	93849355	ID=Msa0389210-mRNA-1:three_prime_utr;Parent=Msa0389210-mRNA-1

Gene Sequence

>Msa0389210

ATGACCACACAACGTTCTCATGTTCCAAAGTTTGGCAATTGGGAAGGCGAAGATGATGTTCCTTATACAGTTTATTTCGACAAAGCTCGGAAAAGTCGACCTGGCTCCAAAATGATCAACCCAAACGATCCTGAGGAAAATCCAGATTTAGTTCTTCAAAATTCATCTTCTGATGACGTAATTCCTCCAAAACCAAGAGTTAGTTCGGAGAATCAATCAGAAAAAGGAACAAACAAGGAGGAGGGTGATGTTAAGCATTCTGTTAACTCGCCGGCTCGTCCTGGAGGTCATGGAGTAGGTTCTGCTGATAGCCGCAGAAGACCTTCAAGACAAAGTACTGCTAGCTCAGAGTACAGTGTTGAACGTTCACCTCTTCATCGCCAGGCTAAAACTCCTGGTAGAGATAGTCCTTCTTGGGAAGGAAAGAGTACATATGACAGCAGTCATGGTACACCTGGAAGATCCCGATTGAGACCGCCTGATAAAAGTGCTGCTGTTCCAAAGTTTGGTGAGTGGGATGAGAGTGACCCTGCATCTGCTGATGGCTATACTCACATTTTCAACAAAGTGCGTGAGGAGAAGCACGTTGCGGCTGGAAATGCACCAGGCACACCCAACGGGAGATCATATGTTATCCGAAACCAACCTGCGAATGACAAAGCTCAGGGTTGCTGCTTTTTCTGGGGCAGAAAATGA

Protein sequence

>Msa0389210

MTTQRSHVPKFGNWEGEDDVPYTVYFDKARKSRPGSKMINPNDPEENPDLVLQNSSSDDVIPPKPRVSSENQSEKGTNKEEGDVKHSVNSPARPGGHGVGSADSRRRPSRQSTASSEYSVERSPLHRQAKTPGRDSPSWEGKSTYDSSHGTPGRSRLRPPDKSAAVPKFGEWDESDPASADGYTHIFNKVREEKHVAAGNAPGTPNGRSYVIRNQPANDKAQGCCFFWGRK*