Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427590 | XP_013445800.1 | 99.324 | 296 | 2 | 0 | 1 | 296 | 30 | 325 | 0.0 | 607 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427590 | sp|P49730|RIR2_TOBAC | 83.333 | 300 | 46 | 2 | 1 | 296 | 30 | 329 | 0.0 | 514 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427590 | A0A072TRK2 | 99.324 | 296 | 2 | 0 | 1 | 296 | 30 | 325 | 0.0 | 607 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1362130 | Msa1427590 | 0.811935 | 5.456965e-51 | -8.615850e-47 |
| Msa0606100 | Msa1427590 | 0.821367 | 4.191780e-53 | -8.615850e-47 |
| Msa0607800 | Msa1427590 | 0.813537 | 2.434006e-51 | -8.615850e-47 |
| Msa0621710 | Msa1427590 | 0.807207 | 5.659033e-50 | -8.615850e-47 |
| Msa0647050 | Msa1427590 | 0.809623 | 1.726759e-50 | -8.615850e-47 |
| Msa0648040 | Msa1427590 | 0.812588 | 3.930898e-51 | -8.615850e-47 |
| Msa0690740 | Msa1427590 | 0.805989 | 1.022607e-49 | -8.615850e-47 |
| Msa0714520 | Msa1427590 | 0.833690 | 4.613023e-56 | -8.615850e-47 |
| Msa0743440 | Msa1427590 | 0.800620 | 1.323216e-48 | -8.615850e-47 |
| Msa0745720 | Msa1427590 | 0.811228 | 7.774399e-51 | -8.615850e-47 |
| Msa0756180 | Msa1427590 | 0.816847 | 4.476981e-52 | -8.615850e-47 |
| Msa0805680 | Msa1427590 | 0.800074 | 1.709157e-48 | -8.615850e-47 |
| Msa0818880 | Msa1427590 | 0.834200 | 3.438426e-56 | -8.615850e-47 |
| Msa1254540 | Msa1427590 | 0.805685 | 1.184559e-49 | -8.615850e-47 |
| Msa1261050 | Msa1427590 | 0.808518 | 2.977855e-50 | -8.615850e-47 |
| Msa1300460 | Msa1427590 | 0.813138 | 2.978194e-51 | -8.615850e-47 |
| Msa1301700 | Msa1427590 | 0.800595 | 1.338900e-48 | -8.615850e-47 |
| Msa1332950 | Msa1427590 | 0.823111 | 1.651789e-53 | -8.615850e-47 |
| Msa0367520 | Msa1427590 | 0.814484 | 1.504795e-51 | -8.615850e-47 |
| Msa1033920 | Msa1427590 | 0.804779 | 1.833826e-49 | -8.615850e-47 |
| Msa1042880 | Msa1427590 | 0.833662 | 4.687842e-56 | -8.615850e-47 |
| Msa1054740 | Msa1427590 | 0.815269 | 1.007772e-51 | -8.615850e-47 |
| Msa1084530 | Msa1427590 | 0.801153 | 1.029891e-48 | -8.615850e-47 |
| Msa0279180 | Msa1427590 | 0.805935 | 1.049816e-49 | -8.615850e-47 |
| Msa1125820 | Msa1427590 | 0.803328 | 3.674414e-49 | -8.615850e-47 |
| Msa1127470 | Msa1427590 | 0.811712 | 6.102829e-51 | -8.615850e-47 |
| Msa1162880 | Msa1427590 | 0.805533 | 1.275184e-49 | -8.615850e-47 |
| Msa1201540 | Msa1427590 | 0.806511 | 7.939002e-50 | -8.615850e-47 |
| Msa1223390 | Msa1427590 | 0.818935 | 1.512114e-52 | -8.615850e-47 |
| Msa0553750 | Msa1427590 | 0.812263 | 4.628955e-51 | -8.615850e-47 |
| Msa0867110 | Msa1427590 | 0.810588 | 1.069799e-50 | -8.615850e-47 |
| Msa0931590 | Msa1427590 | 0.819381 | 1.196897e-52 | -8.615850e-47 |
| Msa0966480 | Msa1427590 | 0.802394 | 5.727242e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427590 | MtrunA17_Chr8g0362581 | 99.324 | 296 | 2 | 0 | 1 | 296 | 30 | 325 | 0.0 | 607 |
| Msa1427590 | MtrunA17_Chr7g0225281 | 92.027 | 301 | 19 | 1 | 1 | 296 | 30 | 330 | 0.0 | 572 |
| Msa1427590 | MtrunA17_Chr7g0225401 | 92.027 | 301 | 19 | 1 | 1 | 296 | 30 | 330 | 0.0 | 571 |
| Msa1427590 | MtrunA17_Chr1g0171221 | 92.027 | 301 | 19 | 1 | 1 | 296 | 30 | 330 | 0.0 | 570 |
| Msa1427590 | MtrunA17_Chr4g0065771 | 78.333 | 300 | 61 | 1 | 1 | 296 | 42 | 341 | 1.66e-179 | 498 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427590 | AT3G23580.1 | 78.000 | 300 | 62 | 1 | 1 | 296 | 42 | 341 | 1.75e-176 | 491 |
| Msa1427590 | AT3G27060.1 | 80.858 | 303 | 51 | 3 | 1 | 296 | 30 | 332 | 2.08e-172 | 480 |
Find 54 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGGATTTGATTTCGCTTC+AGG | 0.266722 | tig0026192:+6076 | Msa1427590:CDS |
| TCCGAAGCGCGTGCTTTCTA+TGG | 0.277078 | tig0026192:+5498 | Msa1427590:CDS |
| AACTTCTTTCATGAATCTTC+CGG | 0.306172 | tig0026192:-5469 | None:intergenic |
| CGCTTCCTTGTGCGTTGGTT+GGG | 0.331961 | tig0026192:+5949 | Msa1427590:CDS |
| ATTTCTTTGAGAAGCGCGTT+GGG | 0.337568 | tig0026192:+6108 | Msa1427590:CDS |
| GTTGCTTTCGCTTGTGTTGA+AGG | 0.362449 | tig0026192:+5705 | Msa1427590:CDS |
| AAGCTGATTGGGCTTTGAAA+TGG | 0.371966 | tig0026192:+5649 | Msa1427590:CDS |
| ACCGTCGGAAGCGGCGAAAA+AGG | 0.385604 | tig0026192:-5427 | None:intergenic |
| TGCTGATTATTGCTTTACTT+TGG | 0.386701 | tig0026192:+6163 | Msa1427590:CDS |
| ATGTTCAGAATCCGTTTGAT+TGG | 0.390491 | tig0026192:+6054 | Msa1427590:CDS |
| GTTTGTTGCTGATAGGTTGT+TGG | 0.410068 | tig0026192:+6004 | Msa1427590:CDS |
| ACCATAGAAAGCACGCGCTT+CGG | 0.432842 | tig0026192:-5499 | None:intergenic |
| GCGCTTCCTTGTGCGTTGGT+TGG | 0.437283 | tig0026192:+5948 | Msa1427590:CDS |
| TCAGAATCCGTTTGATTGGA+TGG | 0.443597 | tig0026192:+6058 | Msa1427590:CDS |
| GATAGGTTGTTGGGTGAACT+TGG | 0.452257 | tig0026192:+6014 | Msa1427590:CDS |
| GAAAATCGCACAGAAGCTTC+CGG | 0.456616 | tig0026192:-5739 | None:intergenic |
| TTTGTTGCTGATAGGTTGTT+GGG | 0.461848 | tig0026192:+6005 | Msa1427590:CDS |
| TATTGCTAAGAAAGCTGATT+GGG | 0.465189 | tig0026192:+5638 | Msa1427590:CDS |
| AATCGCTTATATACGTTTCG+AGG | 0.468396 | tig0026192:-5569 | None:intergenic |
| CGAAATAAGCTCGTTTGAGA+AGG | 0.470666 | tig0026192:-5796 | None:intergenic |
| GGCGGTCCAGAAAGAGGCTT+CGG | 0.476778 | tig0026192:-5322 | None:intergenic |
| ATCAAATCCATCCAATCAAA+CGG | 0.489030 | tig0026192:-6065 | None:intergenic |
| ATGGATTTGATTTCGCTTCA+GGG | 0.493555 | tig0026192:+6077 | Msa1427590:CDS |
| GGAGGAAAGATCGACTTCTT+CGG | 0.499480 | tig0026192:-5343 | None:intergenic |
| TTCTTCGGCGGTCCAGAAAG+AGG | 0.507977 | tig0026192:-5328 | None:intergenic |
| TTATTGCTTTACTTTGGATG+AGG | 0.510830 | tig0026192:+6169 | Msa1427590:CDS |
| TTTCCTCCGATCTTCAACAC+TGG | 0.515193 | tig0026192:+5358 | Msa1427590:CDS |
| GTATTGCTAAGAAAGCTGAT+TGG | 0.515724 | tig0026192:+5637 | Msa1427590:CDS |
| CAGAAAGCTTCTGTTATGAA+TGG | 0.519026 | tig0026192:+6137 | Msa1427590:CDS |
| GTGATGCAGTTGAGATTGAA+AGG | 0.522321 | tig0026192:+5910 | Msa1427590:CDS |
| AATTTCTTTGAGAAGCGCGT+TGG | 0.523856 | tig0026192:+6107 | Msa1427590:CDS |
| ATATTGAGTTTGTTGCTGAT+AGG | 0.535233 | tig0026192:+5997 | Msa1427590:CDS |
| GAGCTTATTTCGCGTGACGA+AGG | 0.555351 | tig0026192:+5807 | Msa1427590:CDS |
| GTTGTTCCAGTGTTGAAGAT+CGG | 0.557909 | tig0026192:-5364 | None:intergenic |
| GACGAAGTGGCGTTCGCCGT+CGG | 0.563379 | tig0026192:-5391 | None:intergenic |
| GAGGACGATACCGTCGGAAG+CGG | 0.563447 | tig0026192:-5436 | None:intergenic |
| TGTGCGTTGGTTGGGATGAA+CGG | 0.572801 | tig0026192:+5957 | Msa1427590:CDS |
| TGATGCAGTTGAGATTGAAA+GGG | 0.582117 | tig0026192:+5911 | Msa1427590:CDS |
| ATCGTCCTCGAAAACCTCGC+CGG | 0.585158 | tig0026192:+5450 | Msa1427590:CDS |
| CGACGCGCTTCCTTGTGCGT+TGG | 0.585443 | tig0026192:+5944 | Msa1427590:CDS |
| TCGTTTGAGAAGGTTAATCC+CGG | 0.587906 | tig0026192:-5786 | None:intergenic |
| TTTCTTTGAGAAGCGCGTTG+GGG | 0.598671 | tig0026192:+6109 | Msa1427590:CDS |
| CTTTCATGAATCTTCCGGCG+AGG | 0.609684 | tig0026192:-5464 | None:intergenic |
| GAAGCTGAGTTCAGAGCGAG+TGG | 0.611132 | tig0026192:+5875 | Msa1427590:CDS |
| CACTGGAACAACCTCACCGA+CGG | 0.611309 | tig0026192:+5375 | Msa1427590:CDS |
| TTCATCCCAACCAACGCACA+AGG | 0.615150 | tig0026192:-5954 | None:intergenic |
| AGTGGCGTTCGCCGTCGGTG+AGG | 0.618653 | tig0026192:-5386 | None:intergenic |
| TGGATTTGATTTCGCTTCAG+GGG | 0.620413 | tig0026192:+6078 | Msa1427590:CDS |
| GTTCCAGTGTTGAAGATCGG+AGG | 0.622372 | tig0026192:-5361 | None:intergenic |
| CGAGGATGTGAGAGACGAAG+TGG | 0.630959 | tig0026192:-5404 | None:intergenic |
| TCAGCTTTCTTAGCAATACA+CGG | 0.642160 | tig0026192:-5633 | None:intergenic |
| AAAGCTTCTGTTATGAATGG+TGG | 0.674687 | tig0026192:+6140 | Msa1427590:CDS |
| GGAAAGATCGACTTCTTCGG+CGG | 0.687608 | tig0026192:-5340 | None:intergenic |
| GAAGAGAATACATCTCAGAG+TGG | 0.694344 | tig0026192:-5545 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| AACTTCTTTCATGAATCTTC+CGG | - | tig0026192:5472-5491 | None:intergenic | 30.0% | |
| TATTGCTAAGAAAGCTGATT+GGG | + | tig0026192:5638-5657 | Msa1427590:CDS | 30.0% | |
| !!! | ATTTTCTGGTTGAAAAAACG+CGG | + | tig0026192:5756-5775 | Msa1427590:CDS | 30.0% |
| !! | ATATTGAGTTTGTTGCTGAT+AGG | + | tig0026192:5997-6016 | Msa1427590:CDS | 30.0% |
| ATCAAATCCATCCAATCAAA+CGG | - | tig0026192:6068-6087 | None:intergenic | 30.0% | |
| ! | TGCTGATTATTGCTTTACTT+TGG | + | tig0026192:6163-6182 | Msa1427590:CDS | 30.0% |
| TTATTGCTTTACTTTGGATG+AGG | + | tig0026192:6169-6188 | Msa1427590:CDS | 30.0% | |
| AACTTCTTTCATGAATCTTC+CGG | - | tig0026192:5472-5491 | None:intergenic | 30.0% | |
| TATTGCTAAGAAAGCTGATT+GGG | + | tig0026192:5638-5657 | Msa1427590:CDS | 30.0% | |
| !!! | ATTTTCTGGTTGAAAAAACG+CGG | + | tig0026192:5756-5775 | Msa1427590:CDS | 30.0% |
| !! | ATATTGAGTTTGTTGCTGAT+AGG | + | tig0026192:5997-6016 | Msa1427590:CDS | 30.0% |
| ATCAAATCCATCCAATCAAA+CGG | - | tig0026192:6068-6087 | None:intergenic | 30.0% | |
| ! | TGCTGATTATTGCTTTACTT+TGG | + | tig0026192:6163-6182 | Msa1427590:CDS | 30.0% |
| TTATTGCTTTACTTTGGATG+AGG | + | tig0026192:6169-6188 | Msa1427590:CDS | 30.0% | |
| AATCGCTTATATACGTTTCG+AGG | - | tig0026192:5572-5591 | None:intergenic | 35.0% | |
| TCAGCTTTCTTAGCAATACA+CGG | - | tig0026192:5636-5655 | None:intergenic | 35.0% | |
| GTATTGCTAAGAAAGCTGAT+TGG | + | tig0026192:5637-5656 | Msa1427590:CDS | 35.0% | |
| ! | GTTGAAGGAATTTTCTTCTC+CGG | + | tig0026192:5720-5739 | Msa1427590:CDS | 35.0% |
| TGATGCAGTTGAGATTGAAA+GGG | + | tig0026192:5911-5930 | Msa1427590:CDS | 35.0% | |
| TTTGTTGCTGATAGGTTGTT+GGG | + | tig0026192:6005-6024 | Msa1427590:CDS | 35.0% | |
| ATGTTCAGAATCCGTTTGAT+TGG | + | tig0026192:6054-6073 | Msa1427590:CDS | 35.0% | |
| ! | ATGGATTTGATTTCGCTTCA+GGG | + | tig0026192:6077-6096 | Msa1427590:CDS | 35.0% |
| CAGAAAGCTTCTGTTATGAA+TGG | + | tig0026192:6137-6156 | Msa1427590:CDS | 35.0% | |
| AAAGCTTCTGTTATGAATGG+TGG | + | tig0026192:6140-6159 | Msa1427590:CDS | 35.0% | |
| AATCGCTTATATACGTTTCG+AGG | - | tig0026192:5572-5591 | None:intergenic | 35.0% | |
| TCAGCTTTCTTAGCAATACA+CGG | - | tig0026192:5636-5655 | None:intergenic | 35.0% | |
| GTATTGCTAAGAAAGCTGAT+TGG | + | tig0026192:5637-5656 | Msa1427590:CDS | 35.0% | |
| ! | GTTGAAGGAATTTTCTTCTC+CGG | + | tig0026192:5720-5739 | Msa1427590:CDS | 35.0% |
| TGATGCAGTTGAGATTGAAA+GGG | + | tig0026192:5911-5930 | Msa1427590:CDS | 35.0% | |
| TTTGTTGCTGATAGGTTGTT+GGG | + | tig0026192:6005-6024 | Msa1427590:CDS | 35.0% | |
| ATGTTCAGAATCCGTTTGAT+TGG | + | tig0026192:6054-6073 | Msa1427590:CDS | 35.0% | |
| ! | ATGGATTTGATTTCGCTTCA+GGG | + | tig0026192:6077-6096 | Msa1427590:CDS | 35.0% |
| CAGAAAGCTTCTGTTATGAA+TGG | + | tig0026192:6137-6156 | Msa1427590:CDS | 35.0% | |
| AAAGCTTCTGTTATGAATGG+TGG | + | tig0026192:6140-6159 | Msa1427590:CDS | 35.0% | |
| ! | GTTGTTCCAGTGTTGAAGAT+CGG | - | tig0026192:5367-5386 | None:intergenic | 40.0% |
| ! | GGATGTTTTCAATAGCGATC+TGG | - | tig0026192:5527-5546 | None:intergenic | 40.0% |
| GAAGAGAATACATCTCAGAG+TGG | - | tig0026192:5548-5567 | None:intergenic | 40.0% | |
| !! | AAGCTGATTGGGCTTTGAAA+TGG | + | tig0026192:5649-5668 | Msa1427590:CDS | 40.0% |
| GAAAAAACGCGGTTTAATGC+CGG | + | tig0026192:5767-5786 | Msa1427590:CDS | 40.0% | |
| AAAAAACGCGGTTTAATGCC+GGG | + | tig0026192:5768-5787 | Msa1427590:CDS | 40.0% | |
| TCGTTTGAGAAGGTTAATCC+CGG | - | tig0026192:5789-5808 | None:intergenic | 40.0% | |
| CGAAATAAGCTCGTTTGAGA+AGG | - | tig0026192:5799-5818 | None:intergenic | 40.0% | |
| GTGATGCAGTTGAGATTGAA+AGG | + | tig0026192:5910-5929 | Msa1427590:CDS | 40.0% | |
| ! | GTTTGTTGCTGATAGGTTGT+TGG | + | tig0026192:6004-6023 | Msa1427590:CDS | 40.0% |
| TCAGAATCCGTTTGATTGGA+TGG | + | tig0026192:6058-6077 | Msa1427590:CDS | 40.0% | |
| ! | GATGGATTTGATTTCGCTTC+AGG | + | tig0026192:6076-6095 | Msa1427590:CDS | 40.0% |
| ! | TGGATTTGATTTCGCTTCAG+GGG | + | tig0026192:6078-6097 | Msa1427590:CDS | 40.0% |
| ! | AATTTCTTTGAGAAGCGCGT+TGG | + | tig0026192:6107-6126 | Msa1427590:CDS | 40.0% |
| ! | ATTTCTTTGAGAAGCGCGTT+GGG | + | tig0026192:6108-6127 | Msa1427590:CDS | 40.0% |
| ! | GTTGTTCCAGTGTTGAAGAT+CGG | - | tig0026192:5367-5386 | None:intergenic | 40.0% |
| ! | GGATGTTTTCAATAGCGATC+TGG | - | tig0026192:5527-5546 | None:intergenic | 40.0% |
| GAAGAGAATACATCTCAGAG+TGG | - | tig0026192:5548-5567 | None:intergenic | 40.0% | |
| !! | AAGCTGATTGGGCTTTGAAA+TGG | + | tig0026192:5649-5668 | Msa1427590:CDS | 40.0% |
| GAAAAAACGCGGTTTAATGC+CGG | + | tig0026192:5767-5786 | Msa1427590:CDS | 40.0% | |
| AAAAAACGCGGTTTAATGCC+GGG | + | tig0026192:5768-5787 | Msa1427590:CDS | 40.0% | |
| TCGTTTGAGAAGGTTAATCC+CGG | - | tig0026192:5789-5808 | None:intergenic | 40.0% | |
| CGAAATAAGCTCGTTTGAGA+AGG | - | tig0026192:5799-5818 | None:intergenic | 40.0% | |
| GTGATGCAGTTGAGATTGAA+AGG | + | tig0026192:5910-5929 | Msa1427590:CDS | 40.0% | |
| ! | GTTTGTTGCTGATAGGTTGT+TGG | + | tig0026192:6004-6023 | Msa1427590:CDS | 40.0% |
| TCAGAATCCGTTTGATTGGA+TGG | + | tig0026192:6058-6077 | Msa1427590:CDS | 40.0% | |
| ! | GATGGATTTGATTTCGCTTC+AGG | + | tig0026192:6076-6095 | Msa1427590:CDS | 40.0% |
| ! | TGGATTTGATTTCGCTTCAG+GGG | + | tig0026192:6078-6097 | Msa1427590:CDS | 40.0% |
| ! | AATTTCTTTGAGAAGCGCGT+TGG | + | tig0026192:6107-6126 | Msa1427590:CDS | 40.0% |
| ! | ATTTCTTTGAGAAGCGCGTT+GGG | + | tig0026192:6108-6127 | Msa1427590:CDS | 40.0% |
| AAAAAGCCGAAGCCTCTTTC+TGG | + | tig0026192:5316-5335 | Msa1427590:CDS | 45.0% | |
| ! | GGAGGAAAGATCGACTTCTT+CGG | - | tig0026192:5346-5365 | None:intergenic | 45.0% |
| TTTCCTCCGATCTTCAACAC+TGG | + | tig0026192:5358-5377 | Msa1427590:CDS | 45.0% | |
| ! | GTTGCTTTCGCTTGTGTTGA+AGG | + | tig0026192:5705-5724 | Msa1427590:CDS | 45.0% |
| GAAAATCGCACAGAAGCTTC+CGG | - | tig0026192:5742-5761 | None:intergenic | 45.0% | |
| ! | GAAGCTTCTGTGCGATTTTC+TGG | + | tig0026192:5742-5761 | Msa1427590:CDS | 45.0% |
| GATAGGTTGTTGGGTGAACT+TGG | + | tig0026192:6014-6033 | Msa1427590:CDS | 45.0% | |
| ! | TTTCTTTGAGAAGCGCGTTG+GGG | + | tig0026192:6109-6128 | Msa1427590:CDS | 45.0% |
| AAAAAGCCGAAGCCTCTTTC+TGG | + | tig0026192:5316-5335 | Msa1427590:CDS | 45.0% | |
| ! | GGAGGAAAGATCGACTTCTT+CGG | - | tig0026192:5346-5365 | None:intergenic | 45.0% |
| TTTCCTCCGATCTTCAACAC+TGG | + | tig0026192:5358-5377 | Msa1427590:CDS | 45.0% | |
| ! | GTTGCTTTCGCTTGTGTTGA+AGG | + | tig0026192:5705-5724 | Msa1427590:CDS | 45.0% |
| GAAAATCGCACAGAAGCTTC+CGG | - | tig0026192:5742-5761 | None:intergenic | 45.0% | |
| ! | GAAGCTTCTGTGCGATTTTC+TGG | + | tig0026192:5742-5761 | Msa1427590:CDS | 45.0% |
| GATAGGTTGTTGGGTGAACT+TGG | + | tig0026192:6014-6033 | Msa1427590:CDS | 45.0% | |
| ! | TTTCTTTGAGAAGCGCGTTG+GGG | + | tig0026192:6109-6128 | Msa1427590:CDS | 45.0% |
| ! | GGAAAGATCGACTTCTTCGG+CGG | - | tig0026192:5343-5362 | None:intergenic | 50.0% |
| ! | GTTCCAGTGTTGAAGATCGG+AGG | - | tig0026192:5364-5383 | None:intergenic | 50.0% |
| !! | GTTTTCGAGGACGATACCGT+CGG | - | tig0026192:5445-5464 | None:intergenic | 50.0% |
| CTTTCATGAATCTTCCGGCG+AGG | - | tig0026192:5467-5486 | None:intergenic | 50.0% | |
| ! | ACCATAGAAAGCACGCGCTT+CGG | - | tig0026192:5502-5521 | None:intergenic | 50.0% |
| GAGCTTATTTCGCGTGACGA+AGG | + | tig0026192:5807-5826 | Msa1427590:CDS | 50.0% | |
| TTCATCCCAACCAACGCACA+AGG | - | tig0026192:5957-5976 | None:intergenic | 50.0% | |
| !! | TGTGCGTTGGTTGGGATGAA+CGG | + | tig0026192:5957-5976 | Msa1427590:CDS | 50.0% |
| ! | GGAAAGATCGACTTCTTCGG+CGG | - | tig0026192:5343-5362 | None:intergenic | 50.0% |
| ! | GTTCCAGTGTTGAAGATCGG+AGG | - | tig0026192:5364-5383 | None:intergenic | 50.0% |
| !! | GTTTTCGAGGACGATACCGT+CGG | - | tig0026192:5445-5464 | None:intergenic | 50.0% |
| CTTTCATGAATCTTCCGGCG+AGG | - | tig0026192:5467-5486 | None:intergenic | 50.0% | |
| ! | ACCATAGAAAGCACGCGCTT+CGG | - | tig0026192:5502-5521 | None:intergenic | 50.0% |
| GAGCTTATTTCGCGTGACGA+AGG | + | tig0026192:5807-5826 | Msa1427590:CDS | 50.0% | |
| TTCATCCCAACCAACGCACA+AGG | - | tig0026192:5957-5976 | None:intergenic | 50.0% | |
| !! | TGTGCGTTGGTTGGGATGAA+CGG | + | tig0026192:5957-5976 | Msa1427590:CDS | 50.0% |
| TTCTTCGGCGGTCCAGAAAG+AGG | - | tig0026192:5331-5350 | None:intergenic | 55.0% | |
| CACTGGAACAACCTCACCGA+CGG | + | tig0026192:5375-5394 | Msa1427590:CDS | 55.0% | |
| CGAGGATGTGAGAGACGAAG+TGG | - | tig0026192:5407-5426 | None:intergenic | 55.0% | |
| ATCGTCCTCGAAAACCTCGC+CGG | + | tig0026192:5450-5469 | Msa1427590:CDS | 55.0% | |
| ! | ATCTTCCGGCGAGGTTTTCG+AGG | - | tig0026192:5458-5477 | None:intergenic | 55.0% |
| TCCGAAGCGCGTGCTTTCTA+TGG | + | tig0026192:5498-5517 | Msa1427590:CDS | 55.0% | |
| GAAGCTGAGTTCAGAGCGAG+TGG | + | tig0026192:5875-5894 | Msa1427590:CDS | 55.0% | |
| !! | CGCTTCCTTGTGCGTTGGTT+GGG | + | tig0026192:5949-5968 | Msa1427590:CDS | 55.0% |
| TTCTTCGGCGGTCCAGAAAG+AGG | - | tig0026192:5331-5350 | None:intergenic | 55.0% | |
| CACTGGAACAACCTCACCGA+CGG | + | tig0026192:5375-5394 | Msa1427590:CDS | 55.0% | |
| CGAGGATGTGAGAGACGAAG+TGG | - | tig0026192:5407-5426 | None:intergenic | 55.0% | |
| ATCGTCCTCGAAAACCTCGC+CGG | + | tig0026192:5450-5469 | Msa1427590:CDS | 55.0% | |
| ! | ATCTTCCGGCGAGGTTTTCG+AGG | - | tig0026192:5458-5477 | None:intergenic | 55.0% |
| TCCGAAGCGCGTGCTTTCTA+TGG | + | tig0026192:5498-5517 | Msa1427590:CDS | 55.0% | |
| GAAGCTGAGTTCAGAGCGAG+TGG | + | tig0026192:5875-5894 | Msa1427590:CDS | 55.0% | |
| !! | CGCTTCCTTGTGCGTTGGTT+GGG | + | tig0026192:5949-5968 | Msa1427590:CDS | 55.0% |
| GGCGGTCCAGAAAGAGGCTT+CGG | - | tig0026192:5325-5344 | None:intergenic | 60.0% | |
| !! | GCCTTTTTCGCCGCTTCCGA+CGG | + | tig0026192:5426-5445 | Msa1427590:CDS | 60.0% |
| ACCGTCGGAAGCGGCGAAAA+AGG | - | tig0026192:5430-5449 | None:intergenic | 60.0% | |
| GAGGACGATACCGTCGGAAG+CGG | - | tig0026192:5439-5458 | None:intergenic | 60.0% | |
| ! | GCGCTTCCTTGTGCGTTGGT+TGG | + | tig0026192:5948-5967 | Msa1427590:CDS | 60.0% |
| GGCGGTCCAGAAAGAGGCTT+CGG | - | tig0026192:5325-5344 | None:intergenic | 60.0% | |
| !! | GCCTTTTTCGCCGCTTCCGA+CGG | + | tig0026192:5426-5445 | Msa1427590:CDS | 60.0% |
| ACCGTCGGAAGCGGCGAAAA+AGG | - | tig0026192:5430-5449 | None:intergenic | 60.0% | |
| GAGGACGATACCGTCGGAAG+CGG | - | tig0026192:5439-5458 | None:intergenic | 60.0% | |
| ! | GCGCTTCCTTGTGCGTTGGT+TGG | + | tig0026192:5948-5967 | Msa1427590:CDS | 60.0% |
| GACGAAGTGGCGTTCGCCGT+CGG | - | tig0026192:5394-5413 | None:intergenic | 65.0% | |
| CGGAAGCGGCGAAAAAGGCG+AGG | - | tig0026192:5425-5444 | None:intergenic | 65.0% | |
| CGACGCGCTTCCTTGTGCGT+TGG | + | tig0026192:5944-5963 | Msa1427590:CDS | 65.0% | |
| GACGAAGTGGCGTTCGCCGT+CGG | - | tig0026192:5394-5413 | None:intergenic | 65.0% | |
| CGGAAGCGGCGAAAAAGGCG+AGG | - | tig0026192:5425-5444 | None:intergenic | 65.0% | |
| CGACGCGCTTCCTTGTGCGT+TGG | + | tig0026192:5944-5963 | Msa1427590:CDS | 65.0% | |
| AGTGGCGTTCGCCGTCGGTG+AGG | - | tig0026192:5389-5408 | None:intergenic | 70.0% | |
| AGTGGCGTTCGCCGTCGGTG+AGG | - | tig0026192:5389-5408 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026192 | gene | 5309 | 6199 | 5309 | ID=Msa1427590;Name=Msa1427590 |
| tig0026192 | mRNA | 5309 | 6199 | 5309 | ID=Msa1427590-mRNA-1;Parent=Msa1427590;Name=Msa1427590-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|-1|0|1|-1|1|1|0|296 |
| tig0026192 | exon | 5309 | 6199 | 5309 | ID=Msa1427590-mRNA-1:exon:5521;Parent=Msa1427590-mRNA-1 |
| tig0026192 | CDS | 5309 | 6199 | 5309 | ID=Msa1427590-mRNA-1:cds;Parent=Msa1427590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
