Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1054740 | XP_039683556.1 | 99.091 | 330 | 3 | 0 | 1 | 330 | 1 | 330 | 0.0 | 680 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1054740 | sp|P49730|RIR2_TOBAC | 85.455 | 330 | 47 | 1 | 1 | 330 | 1 | 329 | 0.0 | 585 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1054740 | A0A396GVD1 | 99.091 | 330 | 3 | 0 | 1 | 330 | 1 | 330 | 0.0 | 680 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032970 | Msa1054740 | 0.800470 | 1.419953e-48 | -8.615850e-47 |
| Msa0032980 | Msa1054740 | 0.823742 | 1.175510e-53 | -8.615850e-47 |
| Msa0062340 | Msa1054740 | 0.827836 | 1.255222e-54 | -8.615850e-47 |
| Msa0067380 | Msa1054740 | 0.829107 | 6.194177e-55 | -8.615850e-47 |
| Msa0091350 | Msa1054740 | 0.808505 | 2.997458e-50 | -8.615850e-47 |
| Msa0606100 | Msa1054740 | 0.801856 | 7.390575e-49 | -8.615850e-47 |
| Msa0607800 | Msa1054740 | 0.831163 | 1.950425e-55 | -8.615850e-47 |
| Msa0613580 | Msa1054740 | 0.802182 | 6.333070e-49 | -8.615850e-47 |
| Msa0620500 | Msa1054740 | 0.825389 | 4.813304e-54 | -8.615850e-47 |
| Msa0647050 | Msa1054740 | 0.813036 | 3.135807e-51 | -8.615850e-47 |
| Msa0648040 | Msa1054740 | 0.826262 | 2.987417e-54 | -8.615850e-47 |
| Msa0648760 | Msa1054740 | 0.803540 | 3.320808e-49 | -8.615850e-47 |
| Msa0654740 | Msa1054740 | 0.811676 | 6.213724e-51 | -8.615850e-47 |
| Msa0668900 | Msa1054740 | 0.804428 | 2.170792e-49 | -8.615850e-47 |
| Msa0690740 | Msa1054740 | 0.831783 | 1.372287e-55 | -8.615850e-47 |
| Msa0714520 | Msa1054740 | 0.830210 | 3.338198e-55 | -8.615850e-47 |
| Msa0743440 | Msa1054740 | 0.821877 | 3.195777e-53 | -8.615850e-47 |
| Msa0745720 | Msa1054740 | 0.808137 | 3.590354e-50 | -8.615850e-47 |
| Msa0747740 | Msa1054740 | 0.806925 | 6.492019e-50 | -8.615850e-47 |
| Msa0756180 | Msa1054740 | 0.813849 | 2.078711e-51 | -8.615850e-47 |
| Msa0756820 | Msa1054740 | 0.800624 | 1.320530e-48 | -8.615850e-47 |
| Msa0800660 | Msa1054740 | 0.815799 | 7.682474e-52 | -8.615850e-47 |
| Msa0158900 | Msa1054740 | 0.815517 | 8.879365e-52 | -8.615850e-47 |
| Msa0159590 | Msa1054740 | 0.806924 | 6.493799e-50 | -8.615850e-47 |
| Msa0165830 | Msa1054740 | 0.820279 | 7.458603e-53 | -8.615850e-47 |
| Msa0421130 | Msa1054740 | 0.811839 | 5.727954e-51 | -8.615850e-47 |
| Msa0421750 | Msa1054740 | 0.804773 | 1.838797e-49 | -8.615850e-47 |
| Msa0433760 | Msa1054740 | 0.806601 | 7.598920e-50 | -8.615850e-47 |
| Msa0466520 | Msa1054740 | 0.811019 | 8.630904e-51 | -8.615850e-47 |
| Msa0466880 | Msa1054740 | 0.803196 | 3.912811e-49 | -8.615850e-47 |
| Msa0477630 | Msa1054740 | 0.807227 | 5.604290e-50 | -8.615850e-47 |
| Msa1008670 | Msa1054740 | 0.802902 | 4.501044e-49 | -8.615850e-47 |
| Msa1033920 | Msa1054740 | 0.810042 | 1.403335e-50 | -8.615850e-47 |
| Msa1054740 | Msa1082380 | 0.815486 | 9.020034e-52 | -8.615850e-47 |
| Msa1054740 | Msa1104220 | 0.804352 | 2.250945e-49 | -8.615850e-47 |
| Msa1054740 | Msa1127280 | 0.824161 | 9.375543e-54 | -8.615850e-47 |
| Msa1054740 | Msa1127470 | 0.800987 | 1.113721e-48 | -8.615850e-47 |
| Msa1054740 | Msa1132530 | 0.800223 | 1.593824e-48 | -8.615850e-47 |
| Msa1054740 | Msa1139050 | 0.809810 | 1.574296e-50 | -8.615850e-47 |
| Msa1054740 | Msa1162880 | 0.815166 | 1.062687e-51 | -8.615850e-47 |
| Msa1054740 | Msa1165480 | 0.829733 | 4.363609e-55 | -8.615850e-47 |
| Msa1054740 | Msa1214350 | 0.803320 | 3.688254e-49 | -8.615850e-47 |
| Msa1054740 | Msa1215980 | 0.824116 | 9.609145e-54 | -8.615850e-47 |
| Msa1054740 | Msa1218820 | 0.807184 | 5.720580e-50 | -8.615850e-47 |
| Msa1054740 | Msa1223390 | 0.812055 | 5.138558e-51 | -8.615850e-47 |
| Msa1054740 | Msa1254540 | 0.824726 | 6.905933e-54 | -8.615850e-47 |
| Msa1054740 | Msa1261050 | 0.822434 | 2.374221e-53 | -8.615850e-47 |
| Msa1054740 | Msa1263900 | 0.810755 | 9.845831e-51 | -8.615850e-47 |
| Msa1054740 | Msa1294460 | 0.804266 | 2.346100e-49 | -8.615850e-47 |
| Msa1054740 | Msa1294790 | 0.801628 | 8.229679e-49 | -8.615850e-47 |
| Msa1054740 | Msa1300460 | 0.820730 | 5.878973e-53 | -8.615850e-47 |
| Msa1054740 | Msa1305920 | 0.820777 | 5.734421e-53 | -8.615850e-47 |
| Msa1054740 | Msa1332950 | 0.844536 | 7.114449e-59 | -8.615850e-47 |
| Msa1054740 | Msa1339170 | 0.801902 | 7.230284e-49 | -8.615850e-47 |
| Msa1054740 | Msa1361930 | 0.813631 | 2.321405e-51 | -8.615850e-47 |
| Msa1054740 | Msa1362130 | 0.800235 | 1.585267e-48 | -8.615850e-47 |
| Msa1054740 | Msa1367180 | 0.815070 | 1.116222e-51 | -8.615850e-47 |
| Msa1054740 | Msa1381470 | 0.812208 | 4.758415e-51 | -8.615850e-47 |
| Msa1054740 | Msa1406720 | 0.815692 | 8.116907e-52 | -8.615850e-47 |
| Msa1054740 | Msa1427590 | 0.815269 | 1.007772e-51 | -8.615850e-47 |
| Msa1054740 | Msa1457840 | 0.812494 | 4.122318e-51 | -8.615850e-47 |
| Msa0520870 | Msa1054740 | 0.805798 | 1.121502e-49 | -8.615850e-47 |
| Msa0521680 | Msa1054740 | 0.813312 | 2.727454e-51 | -8.615850e-47 |
| Msa0550590 | Msa1054740 | 0.815269 | 1.008003e-51 | -8.615850e-47 |
| Msa0561560 | Msa1054740 | 0.823095 | 1.665376e-53 | -8.615850e-47 |
| Msa0563740 | Msa1054740 | 0.826747 | 2.289029e-54 | -8.615850e-47 |
| Msa0563900 | Msa1054740 | 0.812827 | 3.485379e-51 | -8.615850e-47 |
| Msa0581840 | Msa1054740 | 0.810747 | 9.885774e-51 | -8.615850e-47 |
| Msa0867110 | Msa1054740 | 0.806207 | 9.202803e-50 | -8.615850e-47 |
| Msa0909760 | Msa1054740 | 0.806321 | 8.707193e-50 | -8.615850e-47 |
| Msa0966480 | Msa1054740 | 0.800513 | 1.391431e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1054740 | MtrunA17_Chr7g0225281 | 99.091 | 330 | 3 | 0 | 1 | 330 | 1 | 330 | 0.0 | 680 |
| Msa1054740 | MtrunA17_Chr7g0225401 | 99.091 | 330 | 3 | 0 | 1 | 330 | 1 | 330 | 0.0 | 680 |
| Msa1054740 | MtrunA17_Chr1g0171221 | 98.182 | 330 | 6 | 0 | 1 | 330 | 1 | 330 | 0.0 | 672 |
| Msa1054740 | MtrunA17_Chr8g0362581 | 92.727 | 330 | 19 | 1 | 1 | 330 | 1 | 325 | 0.0 | 637 |
| Msa1054740 | MtrunA17_Chr4g0065771 | 76.615 | 325 | 75 | 1 | 6 | 330 | 18 | 341 | 0.0 | 531 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1054740 | AT3G27060.1 | 83.735 | 332 | 52 | 2 | 1 | 330 | 1 | 332 | 0.0 | 558 |
| Msa1054740 | AT3G23580.1 | 76.615 | 325 | 75 | 1 | 6 | 330 | 18 | 341 | 0.0 | 518 |
Find 57 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGTACATTTCCCAGATTT+TGG | 0.151339 | 7_2:+27057641 | None:intergenic |
| CATTCCATGTATCGCGAAAA+AGG | 0.263160 | 7_2:-27057307 | Msa1054740:CDS |
| CAATCCAATACCCCAAAATC+TGG | 0.320986 | 7_2:-27057653 | Msa1054740:CDS |
| TTTGTTGCTGATAGATTATT+GGG | 0.346573 | 7_2:-27056931 | Msa1054740:CDS |
| GTTTGTTGCTGATAGATTAT+TGG | 0.356307 | 7_2:-27056932 | Msa1054740:CDS |
| AGGCTGATTGGGCGATGAAA+TGG | 0.358474 | 7_2:-27057287 | Msa1054740:CDS |
| GGTGCGAGAAGTGGTTCTTC+TGG | 0.368731 | 7_2:+27057702 | None:intergenic |
| GTTGCATTTGCTTGTGTAGA+AGG | 0.373024 | 7_2:-27057231 | Msa1054740:CDS |
| ATGTTCAGAATCCGTTTGAT+TGG | 0.390491 | 7_2:-27056882 | Msa1054740:CDS |
| GCGCTTCCTTGCGCGTTGGT+TGG | 0.401864 | 7_2:-27056988 | Msa1054740:CDS |
| GAAAATCGCGCAGAAGCTTC+CGG | 0.409737 | 7_2:+27057197 | None:intergenic |
| GGGAACATGCAGAATCGGTC+TGG | 0.418807 | 7_2:+27057675 | None:intergenic |
| ATGCAGAATCGGTCTGGGTT+TGG | 0.432958 | 7_2:+27057681 | None:intergenic |
| TCAGAATCCGTTTGATTGGA+TGG | 0.443597 | 7_2:-27056878 | Msa1054740:CDS |
| CTGTTATGAATAGCTTGAAT+GGG | 0.453833 | 7_2:-27056789 | Msa1054740:CDS |
| TCTGTTATGAATAGCTTGAA+TGG | 0.458759 | 7_2:-27056790 | Msa1054740:CDS |
| CGACGCGCTTCCTTGCGCGT+TGG | 0.462960 | 7_2:-27056992 | Msa1054740:CDS |
| GGCGGTCCAGAATGAGGCTT+CGG | 0.476778 | 7_2:+27057614 | None:intergenic |
| ATGGAATTGATTTCGCTTCA+AGG | 0.479094 | 7_2:-27056859 | Msa1054740:CDS |
| ATCAATTCCATCCAATCAAA+CGG | 0.480364 | 7_2:+27056871 | None:intergenic |
| GAGCTTATTTCACGCGATGA+AGG | 0.485261 | 7_2:-27057129 | Msa1054740:CDS |
| GCATTCTTCGCCGCCTCAGA+CGG | 0.489461 | 7_2:-27057510 | Msa1054740:CDS |
| GGAACATGCAGAATCGGTCT+GGG | 0.489835 | 7_2:+27057676 | None:intergenic |
| GCAATGCAGTTGAAATTGAA+AGG | 0.492366 | 7_2:-27057026 | Msa1054740:CDS |
| GGAGGAAAGATCGACTTCTT+CGG | 0.499480 | 7_2:+27057593 | None:intergenic |
| TCTGAGGCACGTGCTTTCTA+CGG | 0.503147 | 7_2:-27057438 | Msa1054740:CDS |
| AGTGGTTCTTCTGGAAAAGC+AGG | 0.510370 | 7_2:+27057711 | None:intergenic |
| GGGTGAACTTGGTTGTGAAA+AGG | 0.510958 | 7_2:-27056911 | Msa1054740:CDS |
| GATAGATTATTGGGTGAACT+TGG | 0.513434 | 7_2:-27056922 | Msa1054740:CDS |
| GTTGTTCCAGTGCTTGAGAT+CGG | 0.515525 | 7_2:+27057572 | None:intergenic |
| AATTTCTTTGAGAAGCGCGT+TGG | 0.518105 | 7_2:-27056829 | Msa1054740:CDS |
| GGATTGGGAACATGCAGAAT+CGG | 0.521690 | 7_2:+27057670 | None:intergenic |
| TTCTTCGGCGGTCCAGAATG+AGG | 0.524296 | 7_2:+27057608 | None:intergenic |
| TGAAATAAGCTCATTTGAGA+AGG | 0.533224 | 7_2:+27057140 | None:intergenic |
| TTCGAGGACAATTCCGTCTG+AGG | 0.536756 | 7_2:+27057497 | None:intergenic |
| TTTCCTCCGATCTCAAGCAC+TGG | 0.537267 | 7_2:-27057578 | Msa1054740:CDS |
| TCTGGGTTTGGTGCGAGAAG+TGG | 0.546005 | 7_2:+27057693 | None:intergenic |
| CAATGCAGTTGAAATTGAAA+GGG | 0.547072 | 7_2:-27057025 | Msa1054740:CDS |
| TGCGCGTTGGTTGGAATGAA+CGG | 0.550794 | 7_2:-27056979 | Msa1054740:CDS |
| TGGAATTGATTTCGCTTCAA+GGG | 0.551257 | 7_2:-27056858 | Msa1054740:CDS |
| AATCCAATACCCCAAAATCT+GGG | 0.556684 | 7_2:-27057652 | Msa1054740:CDS |
| ATTGTCCTCGAAAATCTCGC+TGG | 0.568595 | 7_2:-27057486 | Msa1054740:CDS |
| TCCTCGAAAATCTCGCTGGA+AGG | 0.571616 | 7_2:-27057482 | Msa1054740:CDS |
| CACTGGAACAACCTCACAGA+CGG | 0.586656 | 7_2:-27057561 | Msa1054740:CDS |
| TTCATTCCAACCAACGCGCA+AGG | 0.588514 | 7_2:+27056982 | None:intergenic |
| GAGGACAATTCCGTCTGAGG+CGG | 0.603534 | 7_2:+27057500 | None:intergenic |
| ATGAATAGCTTGAATGGGAA+TGG | 0.603815 | 7_2:-27056784 | Msa1054740:CDS |
| CGAGGACGTGTGAGATGAAG+TGG | 0.610997 | 7_2:+27057532 | None:intergenic |
| ACTAACTTCAGAGCGTGTGA+AGG | 0.618034 | 7_2:-27057058 | Msa1054740:CDS |
| GTTCCAGTGCTTGAGATCGG+AGG | 0.623496 | 7_2:+27057575 | None:intergenic |
| CTGAGGCGGCGAAGAATGCG+AGG | 0.634916 | 7_2:+27057514 | None:intergenic |
| TCATTTGAGAAGGTTAAACC+CGG | 0.656424 | 7_2:+27057150 | None:intergenic |
| GAAAGAAGTTCAAGTCTCTG+AGG | 0.686151 | 7_2:-27057454 | Msa1054740:CDS |
| GGAAAGATCGACTTCTTCGG+CGG | 0.687608 | 7_2:+27057596 | None:intergenic |
| AGTGGCGTTCGCCGTCTGTG+AGG | 0.694180 | 7_2:+27057550 | None:intergenic |
| GAAGAGAATACATCTCAGAG+TGG | 0.703975 | 7_2:+27057391 | None:intergenic |
| GCGTTGGTTGGAATGAACGG+TGG | 0.708152 | 7_2:-27056976 | Msa1054740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TTTGTTGCTGATAGATTATT+GGG | - | chr7_2:27057527-27057546 | Msa1054740:CDS | 25.0% |
| ! | TTTGTTGCTGATAGATTATT+GGG | - | chr7_2:27057527-27057546 | Msa1054740:CDS | 25.0% |
| ! | TTGTACATTTCCCAGATTTT+GGG | + | chr7_2:27056819-27056838 | None:intergenic | 30.0% |
| ! | TTTGTACATTTCCCAGATTT+TGG | + | chr7_2:27056820-27056839 | None:intergenic | 30.0% |
| !!! | ATTTTCTGGTTGAAAAAACG+CGG | - | chr7_2:27057278-27057297 | Msa1054740:CDS | 30.0% |
| TGAAATAAGCTCATTTGAGA+AGG | + | chr7_2:27057321-27057340 | None:intergenic | 30.0% | |
| CAATGCAGTTGAAATTGAAA+GGG | - | chr7_2:27057433-27057452 | Msa1054740:CDS | 30.0% | |
| ! | GTTTGTTGCTGATAGATTAT+TGG | - | chr7_2:27057526-27057545 | Msa1054740:CDS | 30.0% |
| ATCAATTCCATCCAATCAAA+CGG | + | chr7_2:27057590-27057609 | None:intergenic | 30.0% | |
| TCTGTTATGAATAGCTTGAA+TGG | - | chr7_2:27057668-27057687 | Msa1054740:CDS | 30.0% | |
| CTGTTATGAATAGCTTGAAT+GGG | - | chr7_2:27057669-27057688 | Msa1054740:CDS | 30.0% | |
| !!! | TGCTGATTTTTGCTTTAGTT+TGG | - | chr7_2:27057700-27057719 | Msa1054740:CDS | 30.0% |
| ! | TTGTACATTTCCCAGATTTT+GGG | + | chr7_2:27056819-27056838 | None:intergenic | 30.0% |
| ! | TTTGTACATTTCCCAGATTT+TGG | + | chr7_2:27056820-27056839 | None:intergenic | 30.0% |
| !!! | ATTTTCTGGTTGAAAAAACG+CGG | - | chr7_2:27057278-27057297 | Msa1054740:CDS | 30.0% |
| TGAAATAAGCTCATTTGAGA+AGG | + | chr7_2:27057321-27057340 | None:intergenic | 30.0% | |
| CAATGCAGTTGAAATTGAAA+GGG | - | chr7_2:27057433-27057452 | Msa1054740:CDS | 30.0% | |
| ! | GTTTGTTGCTGATAGATTAT+TGG | - | chr7_2:27057526-27057545 | Msa1054740:CDS | 30.0% |
| ATCAATTCCATCCAATCAAA+CGG | + | chr7_2:27057590-27057609 | None:intergenic | 30.0% | |
| TCTGTTATGAATAGCTTGAA+TGG | - | chr7_2:27057668-27057687 | Msa1054740:CDS | 30.0% | |
| CTGTTATGAATAGCTTGAAT+GGG | - | chr7_2:27057669-27057688 | Msa1054740:CDS | 30.0% | |
| !!! | TGCTGATTTTTGCTTTAGTT+TGG | - | chr7_2:27057700-27057719 | Msa1054740:CDS | 30.0% |
| !!! | AGATTTTGGGGTATTGGATT+GGG | + | chr7_2:27056806-27056825 | None:intergenic | 35.0% |
| AATCCAATACCCCAAAATCT+GGG | - | chr7_2:27056806-27056825 | Msa1054740:CDS | 35.0% | |
| ! | TGTACATTTCCCAGATTTTG+GGG | + | chr7_2:27056818-27056837 | None:intergenic | 35.0% |
| ! | GGATGTTTTCAATTGCAATC+TGG | + | chr7_2:27057049-27057068 | None:intergenic | 35.0% |
| ! | GTAGAAGGAATTTTCTTCTC+CGG | - | chr7_2:27057242-27057261 | Msa1054740:CDS | 35.0% |
| TCATTTGAGAAGGTTAAACC+CGG | + | chr7_2:27057311-27057330 | None:intergenic | 35.0% | |
| GCAATGCAGTTGAAATTGAA+AGG | - | chr7_2:27057432-27057451 | Msa1054740:CDS | 35.0% | |
| GATAGATTATTGGGTGAACT+TGG | - | chr7_2:27057536-27057555 | Msa1054740:CDS | 35.0% | |
| ATGTTCAGAATCCGTTTGAT+TGG | - | chr7_2:27057576-27057595 | Msa1054740:CDS | 35.0% | |
| ! | ATGGAATTGATTTCGCTTCA+AGG | - | chr7_2:27057599-27057618 | Msa1054740:CDS | 35.0% |
| ! | TGGAATTGATTTCGCTTCAA+GGG | - | chr7_2:27057600-27057619 | Msa1054740:CDS | 35.0% |
| ATGAATAGCTTGAATGGGAA+TGG | - | chr7_2:27057674-27057693 | Msa1054740:CDS | 35.0% | |
| !!! | AGATTTTGGGGTATTGGATT+GGG | + | chr7_2:27056806-27056825 | None:intergenic | 35.0% |
| AATCCAATACCCCAAAATCT+GGG | - | chr7_2:27056806-27056825 | Msa1054740:CDS | 35.0% | |
| ! | TGTACATTTCCCAGATTTTG+GGG | + | chr7_2:27056818-27056837 | None:intergenic | 35.0% |
| ! | GGATGTTTTCAATTGCAATC+TGG | + | chr7_2:27057049-27057068 | None:intergenic | 35.0% |
| ! | GTAGAAGGAATTTTCTTCTC+CGG | - | chr7_2:27057242-27057261 | Msa1054740:CDS | 35.0% |
| TCATTTGAGAAGGTTAAACC+CGG | + | chr7_2:27057311-27057330 | None:intergenic | 35.0% | |
| GCAATGCAGTTGAAATTGAA+AGG | - | chr7_2:27057432-27057451 | Msa1054740:CDS | 35.0% | |
| GATAGATTATTGGGTGAACT+TGG | - | chr7_2:27057536-27057555 | Msa1054740:CDS | 35.0% | |
| ATGTTCAGAATCCGTTTGAT+TGG | - | chr7_2:27057576-27057595 | Msa1054740:CDS | 35.0% | |
| ! | ATGGAATTGATTTCGCTTCA+AGG | - | chr7_2:27057599-27057618 | Msa1054740:CDS | 35.0% |
| ! | TGGAATTGATTTCGCTTCAA+GGG | - | chr7_2:27057600-27057619 | Msa1054740:CDS | 35.0% |
| ATGAATAGCTTGAATGGGAA+TGG | - | chr7_2:27057674-27057693 | Msa1054740:CDS | 35.0% | |
| !!! | CAGATTTTGGGGTATTGGAT+TGG | + | chr7_2:27056807-27056826 | None:intergenic | 40.0% |
| CAATCCAATACCCCAAAATC+TGG | - | chr7_2:27056805-27056824 | Msa1054740:CDS | 40.0% | |
| !!! | TTTCCCAGATTTTGGGGTAT+TGG | + | chr7_2:27056812-27056831 | None:intergenic | 40.0% |
| GAAAGAAGTTCAAGTCTCTG+AGG | - | chr7_2:27057004-27057023 | Msa1054740:CDS | 40.0% | |
| GAAGAGAATACATCTCAGAG+TGG | + | chr7_2:27057070-27057089 | None:intergenic | 40.0% | |
| !! | CTTTTTCGCGATACATGGAA+TGG | + | chr7_2:27057153-27057172 | None:intergenic | 40.0% |
| CATTCCATGTATCGCGAAAA+AGG | - | chr7_2:27057151-27057170 | Msa1054740:CDS | 40.0% | |
| TATCGCGAAAAAGGCTGATT+GGG | - | chr7_2:27057160-27057179 | Msa1054740:CDS | 40.0% | |
| GTTGCATTTGCTTGTGTAGA+AGG | - | chr7_2:27057227-27057246 | Msa1054740:CDS | 40.0% | |
| GAAAAAACGCGGTTTAATGC+CGG | - | chr7_2:27057289-27057308 | Msa1054740:CDS | 40.0% | |
| AAAAAACGCGGTTTAATGCC+GGG | - | chr7_2:27057290-27057309 | Msa1054740:CDS | 40.0% | |
| TCAGAATCCGTTTGATTGGA+TGG | - | chr7_2:27057580-27057599 | Msa1054740:CDS | 40.0% | |
| ! | AATTTCTTTGAGAAGCGCGT+TGG | - | chr7_2:27057629-27057648 | Msa1054740:CDS | 40.0% |
| !!! | CAGATTTTGGGGTATTGGAT+TGG | + | chr7_2:27056807-27056826 | None:intergenic | 40.0% |
| CAATCCAATACCCCAAAATC+TGG | - | chr7_2:27056805-27056824 | Msa1054740:CDS | 40.0% | |
| !!! | TTTCCCAGATTTTGGGGTAT+TGG | + | chr7_2:27056812-27056831 | None:intergenic | 40.0% |
| GAAAGAAGTTCAAGTCTCTG+AGG | - | chr7_2:27057004-27057023 | Msa1054740:CDS | 40.0% | |
| GAAGAGAATACATCTCAGAG+TGG | + | chr7_2:27057070-27057089 | None:intergenic | 40.0% | |
| !! | CTTTTTCGCGATACATGGAA+TGG | + | chr7_2:27057153-27057172 | None:intergenic | 40.0% |
| CATTCCATGTATCGCGAAAA+AGG | - | chr7_2:27057151-27057170 | Msa1054740:CDS | 40.0% | |
| TATCGCGAAAAAGGCTGATT+GGG | - | chr7_2:27057160-27057179 | Msa1054740:CDS | 40.0% | |
| GTTGCATTTGCTTGTGTAGA+AGG | - | chr7_2:27057227-27057246 | Msa1054740:CDS | 40.0% | |
| GAAAAAACGCGGTTTAATGC+CGG | - | chr7_2:27057289-27057308 | Msa1054740:CDS | 40.0% | |
| AAAAAACGCGGTTTAATGCC+GGG | - | chr7_2:27057290-27057309 | Msa1054740:CDS | 40.0% | |
| TCAGAATCCGTTTGATTGGA+TGG | - | chr7_2:27057580-27057599 | Msa1054740:CDS | 40.0% | |
| ! | AATTTCTTTGAGAAGCGCGT+TGG | - | chr7_2:27057629-27057648 | Msa1054740:CDS | 40.0% |
| ! | AGTGGTTCTTCTGGAAAAGC+AGG | + | chr7_2:27056750-27056769 | None:intergenic | 45.0% |
| GGATTGGGAACATGCAGAAT+CGG | + | chr7_2:27056791-27056810 | None:intergenic | 45.0% | |
| AAAAAGCCGAAGCCTCATTC+TGG | - | chr7_2:27056838-27056857 | Msa1054740:CDS | 45.0% | |
| ! | GGAGGAAAGATCGACTTCTT+CGG | + | chr7_2:27056868-27056887 | None:intergenic | 45.0% |
| GTTGTTCCAGTGCTTGAGAT+CGG | + | chr7_2:27056889-27056908 | None:intergenic | 45.0% | |
| ATTGTCCTCGAAAATCTCGC+TGG | - | chr7_2:27056972-27056991 | Msa1054740:CDS | 45.0% | |
| !! | TCAGCCTTTTTCGCGATACA+TGG | + | chr7_2:27057158-27057177 | None:intergenic | 45.0% |
| GTATCGCGAAAAAGGCTGAT+TGG | - | chr7_2:27057159-27057178 | Msa1054740:CDS | 45.0% | |
| GAGCTTATTTCACGCGATGA+AGG | - | chr7_2:27057329-27057348 | Msa1054740:CDS | 45.0% | |
| ACTAACTTCAGAGCGTGTGA+AGG | - | chr7_2:27057400-27057419 | Msa1054740:CDS | 45.0% | |
| GGGTGAACTTGGTTGTGAAA+AGG | - | chr7_2:27057547-27057566 | Msa1054740:CDS | 45.0% | |
| ! | AGTGGTTCTTCTGGAAAAGC+AGG | + | chr7_2:27056750-27056769 | None:intergenic | 45.0% |
| GGATTGGGAACATGCAGAAT+CGG | + | chr7_2:27056791-27056810 | None:intergenic | 45.0% | |
| AAAAAGCCGAAGCCTCATTC+TGG | - | chr7_2:27056838-27056857 | Msa1054740:CDS | 45.0% | |
| ! | GGAGGAAAGATCGACTTCTT+CGG | + | chr7_2:27056868-27056887 | None:intergenic | 45.0% |
| GTTGTTCCAGTGCTTGAGAT+CGG | + | chr7_2:27056889-27056908 | None:intergenic | 45.0% | |
| ATTGTCCTCGAAAATCTCGC+TGG | - | chr7_2:27056972-27056991 | Msa1054740:CDS | 45.0% | |
| !! | TCAGCCTTTTTCGCGATACA+TGG | + | chr7_2:27057158-27057177 | None:intergenic | 45.0% |
| GTATCGCGAAAAAGGCTGAT+TGG | - | chr7_2:27057159-27057178 | Msa1054740:CDS | 45.0% | |
| GAGCTTATTTCACGCGATGA+AGG | - | chr7_2:27057329-27057348 | Msa1054740:CDS | 45.0% | |
| ACTAACTTCAGAGCGTGTGA+AGG | - | chr7_2:27057400-27057419 | Msa1054740:CDS | 45.0% | |
| GGGTGAACTTGGTTGTGAAA+AGG | - | chr7_2:27057547-27057566 | Msa1054740:CDS | 45.0% | |
| ATGCAGAATCGGTCTGGGTT+TGG | + | chr7_2:27056780-27056799 | None:intergenic | 50.0% | |
| GGAACATGCAGAATCGGTCT+GGG | + | chr7_2:27056785-27056804 | None:intergenic | 50.0% | |
| ! | GGAAAGATCGACTTCTTCGG+CGG | + | chr7_2:27056865-27056884 | None:intergenic | 50.0% |
| TTTCCTCCGATCTCAAGCAC+TGG | - | chr7_2:27056880-27056899 | Msa1054740:CDS | 50.0% | |
| CACTGGAACAACCTCACAGA+CGG | - | chr7_2:27056897-27056916 | Msa1054740:CDS | 50.0% | |
| TTCGAGGACAATTCCGTCTG+AGG | + | chr7_2:27056964-27056983 | None:intergenic | 50.0% | |
| TCCTCGAAAATCTCGCTGGA+AGG | - | chr7_2:27056976-27056995 | Msa1054740:CDS | 50.0% | |
| ! | ACCTTCCAGCGAGATTTTCG+AGG | + | chr7_2:27056980-27056999 | None:intergenic | 50.0% |
| ! | TCTGAGGCACGTGCTTTCTA+CGG | - | chr7_2:27057020-27057039 | Msa1054740:CDS | 50.0% |
| AGGCTGATTGGGCGATGAAA+TGG | - | chr7_2:27057171-27057190 | Msa1054740:CDS | 50.0% | |
| GAAAATCGCGCAGAAGCTTC+CGG | + | chr7_2:27057264-27057283 | None:intergenic | 50.0% | |
| ! | GAAGCTTCTGCGCGATTTTC+TGG | - | chr7_2:27057264-27057283 | Msa1054740:CDS | 50.0% |
| TTCATTCCAACCAACGCGCA+AGG | + | chr7_2:27057479-27057498 | None:intergenic | 50.0% | |
| !! | TGCGCGTTGGTTGGAATGAA+CGG | - | chr7_2:27057479-27057498 | Msa1054740:CDS | 50.0% |
| ATGCAGAATCGGTCTGGGTT+TGG | + | chr7_2:27056780-27056799 | None:intergenic | 50.0% | |
| GGAACATGCAGAATCGGTCT+GGG | + | chr7_2:27056785-27056804 | None:intergenic | 50.0% | |
| ! | GGAAAGATCGACTTCTTCGG+CGG | + | chr7_2:27056865-27056884 | None:intergenic | 50.0% |
| TTTCCTCCGATCTCAAGCAC+TGG | - | chr7_2:27056880-27056899 | Msa1054740:CDS | 50.0% | |
| CACTGGAACAACCTCACAGA+CGG | - | chr7_2:27056897-27056916 | Msa1054740:CDS | 50.0% | |
| TTCGAGGACAATTCCGTCTG+AGG | + | chr7_2:27056964-27056983 | None:intergenic | 50.0% | |
| TCCTCGAAAATCTCGCTGGA+AGG | - | chr7_2:27056976-27056995 | Msa1054740:CDS | 50.0% | |
| ! | ACCTTCCAGCGAGATTTTCG+AGG | + | chr7_2:27056980-27056999 | None:intergenic | 50.0% |
| ! | TCTGAGGCACGTGCTTTCTA+CGG | - | chr7_2:27057020-27057039 | Msa1054740:CDS | 50.0% |
| AGGCTGATTGGGCGATGAAA+TGG | - | chr7_2:27057171-27057190 | Msa1054740:CDS | 50.0% | |
| GAAAATCGCGCAGAAGCTTC+CGG | + | chr7_2:27057264-27057283 | None:intergenic | 50.0% | |
| ! | GAAGCTTCTGCGCGATTTTC+TGG | - | chr7_2:27057264-27057283 | Msa1054740:CDS | 50.0% |
| TTCATTCCAACCAACGCGCA+AGG | + | chr7_2:27057479-27057498 | None:intergenic | 50.0% | |
| !! | TGCGCGTTGGTTGGAATGAA+CGG | - | chr7_2:27057479-27057498 | Msa1054740:CDS | 50.0% |
| GGTGCGAGAAGTGGTTCTTC+TGG | + | chr7_2:27056759-27056778 | None:intergenic | 55.0% | |
| !! | TCTGGGTTTGGTGCGAGAAG+TGG | + | chr7_2:27056768-27056787 | None:intergenic | 55.0% |
| GGGAACATGCAGAATCGGTC+TGG | + | chr7_2:27056786-27056805 | None:intergenic | 55.0% | |
| TTCTTCGGCGGTCCAGAATG+AGG | + | chr7_2:27056853-27056872 | None:intergenic | 55.0% | |
| GTTCCAGTGCTTGAGATCGG+AGG | + | chr7_2:27056886-27056905 | None:intergenic | 55.0% | |
| CGAGGACGTGTGAGATGAAG+TGG | + | chr7_2:27056929-27056948 | None:intergenic | 55.0% | |
| GAGGACAATTCCGTCTGAGG+CGG | + | chr7_2:27056961-27056980 | None:intergenic | 55.0% | |
| !! | GCGTTGGTTGGAATGAACGG+TGG | - | chr7_2:27057482-27057501 | Msa1054740:CDS | 55.0% |
| GGTGCGAGAAGTGGTTCTTC+TGG | + | chr7_2:27056759-27056778 | None:intergenic | 55.0% | |
| !! | TCTGGGTTTGGTGCGAGAAG+TGG | + | chr7_2:27056768-27056787 | None:intergenic | 55.0% |
| GGGAACATGCAGAATCGGTC+TGG | + | chr7_2:27056786-27056805 | None:intergenic | 55.0% | |
| TTCTTCGGCGGTCCAGAATG+AGG | + | chr7_2:27056853-27056872 | None:intergenic | 55.0% | |
| GTTCCAGTGCTTGAGATCGG+AGG | + | chr7_2:27056886-27056905 | None:intergenic | 55.0% | |
| CGAGGACGTGTGAGATGAAG+TGG | + | chr7_2:27056929-27056948 | None:intergenic | 55.0% | |
| GAGGACAATTCCGTCTGAGG+CGG | + | chr7_2:27056961-27056980 | None:intergenic | 55.0% | |
| !! | GCGTTGGTTGGAATGAACGG+TGG | - | chr7_2:27057482-27057501 | Msa1054740:CDS | 55.0% |
| GGCGGTCCAGAATGAGGCTT+CGG | + | chr7_2:27056847-27056866 | None:intergenic | 60.0% | |
| GCATTCTTCGCCGCCTCAGA+CGG | - | chr7_2:27056948-27056967 | Msa1054740:CDS | 60.0% | |
| GGCGGTCCAGAATGAGGCTT+CGG | + | chr7_2:27056847-27056866 | None:intergenic | 60.0% | |
| GCATTCTTCGCCGCCTCAGA+CGG | - | chr7_2:27056948-27056967 | Msa1054740:CDS | 60.0% | |
| AGTGGCGTTCGCCGTCTGTG+AGG | + | chr7_2:27056911-27056930 | None:intergenic | 65.0% | |
| CTGAGGCGGCGAAGAATGCG+AGG | + | chr7_2:27056947-27056966 | None:intergenic | 65.0% | |
| ! | GCGCTTCCTTGCGCGTTGGT+TGG | - | chr7_2:27057470-27057489 | Msa1054740:CDS | 65.0% |
| AGTGGCGTTCGCCGTCTGTG+AGG | + | chr7_2:27056911-27056930 | None:intergenic | 65.0% | |
| CTGAGGCGGCGAAGAATGCG+AGG | + | chr7_2:27056947-27056966 | None:intergenic | 65.0% | |
| ! | GCGCTTCCTTGCGCGTTGGT+TGG | - | chr7_2:27057470-27057489 | Msa1054740:CDS | 65.0% |
| CGACGCGCTTCCTTGCGCGT+TGG | - | chr7_2:27057466-27057485 | Msa1054740:CDS | 70.0% | |
| CGACGCGCTTCCTTGCGCGT+TGG | - | chr7_2:27057466-27057485 | Msa1054740:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 27056744 | 27057736 | 27056744 | ID=Msa1054740;Name=Msa1054740 |
| chr7_2 | mRNA | 27056744 | 27057736 | 27056744 | ID=Msa1054740-mRNA-1;Parent=Msa1054740;Name=Msa1054740-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|-1|0|1|-1|1|1|0|330 |
| chr7_2 | exon | 27056744 | 27057736 | 27056744 | ID=Msa1054740-mRNA-1:exon:5752;Parent=Msa1054740-mRNA-1 |
| chr7_2 | CDS | 27056744 | 27057736 | 27056744 | ID=Msa1054740-mRNA-1:cds;Parent=Msa1054740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
