AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0853950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0853950 MtrunA17_Chr3g0099931 93.812 501 10 1 1 501 1 480 0.0 955
Msa0853950 MtrunA17_Chr5g0430851 93.812 501 10 1 1 501 1 480 0.0 954
Msa0853950 MtrunA17_Chr1g0153091 81.702 235 18 1 120 329 2 236 2.98e-135 390
Msa0853950 MtrunA17_Chr1g0153121 81.081 111 19 1 391 501 11 119 3.27e-52 172
Msa0853950 MtrunA17_Chr1g0153071 75.000 108 17 1 2 99 1 108 4.38e-42 145
Msa0853950 MtrunA17_Chr6g0461991 25.393 382 257 7 132 500 101 467 9.58e-35 136
Msa0853950 MtrunA17_Chr2g0325071 82.500 40 7 0 432 471 2 41 2.82e-15 69.7
Msa0853950 MtrunA17_Chr3g0078851 22.568 257 169 7 131 367 100 346 6.61e-15 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0853950 AT4G36480.2 72.800 500 115 1 2 501 1 479 0.0 769
Msa0853950 AT4G36480.1 72.800 500 115 1 2 501 1 479 0.0 769
Msa0853950 AT4G36480.3 73.034 356 75 1 2 357 1 335 0.0 557
Msa0853950 AT3G48780.2 26.178 382 254 7 132 500 101 467 1.73e-36 141
Msa0853950 AT3G48780.1 26.178 382 254 7 132 500 101 467 1.73e-36 141
Msa0853950 AT5G23670.1 25.459 381 256 7 132 499 101 466 9.74e-36 139
Msa0853950 AT5G23670.2 25.459 381 256 7 132 499 101 466 9.74e-36 139
Msa0853950 AT3G48790.1 26.488 336 219 7 173 499 7 323 1.35e-27 114
Msa0853950 AT3G48790.2 25.566 309 202 7 200 499 2 291 3.85e-20 91.7
Msa0853950 AT5G04620.2 24.672 381 232 14 131 488 102 450 5.96e-18 87.0
Msa0853950 AT5G04620.3 24.521 261 167 7 131 371 102 352 1.94e-17 85.1
Msa0853950 AT5G04620.1 25.000 360 213 15 138 488 6 317 3.13e-12 68.2

Find 114 sgRNAs with CRISPR-Local

Find 492 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCAACTTTGTTAATATAT+TGG 0.157469 5_4:+46084491 None:intergenic
GATTCAATTCTATACTCTTA+TGG 0.157510 5_4:-46086216 Msa0853950:CDS
TGGTGAACACTACGTTAAAT+TGG 0.189146 5_4:-46090981 Msa0853950:CDS
TTATGTAATGTAATATTCTA+TGG 0.197137 5_4:-46083893 Msa0853950:three_prime_UTR
CAATTTAATGATATCATCTA+AGG 0.207047 5_4:+46085073 None:intergenic
GGCTTCAGCTGTTGTTAATT+TGG 0.249613 5_4:-46091001 Msa0853950:CDS
TTCAACTTTGTTAATATATT+GGG 0.250485 5_4:+46084492 None:intergenic
TTTGGTGTGCTTGGAAGTTC+TGG 0.252911 5_4:-46085005 Msa0853950:CDS
ATCTATAACTCTTGCACTTC+CGG 0.274595 5_4:+46084774 None:intergenic
ATTCAATTCTATACTCTTAT+GGG 0.280484 5_4:-46086215 Msa0853950:CDS
GCAAACTATCTTGGGCTTAT+AGG 0.284137 5_4:-46086532 Msa0853950:CDS
AGTTAAGAAGAAAGCAAATA+AGG 0.298344 5_4:-46091492 Msa0853950:five_prime_UTR
AATATAACGCCTCAAATTCT+TGG 0.308467 5_4:+46085754 None:intergenic
TAAGTTTCTAATTGTGAGTT+GGG 0.312028 5_4:-46083801 Msa0853950:three_prime_UTR
TAAAGAAGTCAACGGGTTCT+TGG 0.317547 5_4:-46084202 Msa0853950:CDS
AGAACAACATTGCTATGTTA+TGG 0.319735 5_4:-46084470 Msa0853950:CDS
AACTTCTTTACCATTAACTA+TGG 0.324145 5_4:+46086570 None:intergenic
GGCCCACATACCATAGTTAA+TGG 0.336802 5_4:-46086580 Msa0853950:CDS
AGAATATTACATTACATAAA+AGG 0.354541 5_4:+46083897 None:intergenic
ACGTGTTAAGCGATAGTATA+AGG 0.360863 5_4:-46083827 Msa0853950:three_prime_UTR
TTTAATCTCAAATAAACAAT+TGG 0.376539 5_4:+46084221 None:intergenic
TTTCCTCAGCAAACTATCTT+GGG 0.388101 5_4:-46086540 Msa0853950:CDS
ACTTCTGCTCTAGAGAAATA+TGG 0.391710 5_4:-46086400 Msa0853950:CDS
CCCAACAATTCTTACACGTT+CGG 0.393295 5_4:+46084148 None:intergenic
ATTGCAGCGCTTGCAAGATA+TGG 0.398789 5_4:+46084543 None:intergenic
AATATTCTATGGGCTAGCTT+AGG 0.407403 5_4:-46083882 Msa0853950:three_prime_UTR
CTGGATGAGAGCAACTCATT+TGG 0.408220 5_4:-46085023 Msa0853950:CDS
ATAAGATTGTTTGTTTCTGC+AGG 0.409979 5_4:-46083994 Msa0853950:CDS
GGTGAACACTACGTTAAATT+GGG 0.418406 5_4:-46090980 Msa0853950:CDS
AGCAACTCATTTGGTGTGCT+TGG 0.418751 5_4:-46085014 Msa0853950:CDS
AGATGATATCATTAAATTGA+AGG 0.426232 5_4:-46085069 Msa0853950:CDS
CAGTGCTTCTAGAAAGATAA+AGG 0.430339 5_4:+46085852 None:intergenic
GAAAGAAGATTCTGTATTTG+TGG 0.431444 5_4:-46084064 Msa0853950:CDS
AGGCATCTGAATCATTGAAA+AGG 0.432396 5_4:-46083948 Msa0853950:CDS
TAGGATGAGCCCTAGCATAT+TGG 0.450348 5_4:-46087143 Msa0853950:CDS
TAAGAGTATAGAATTGAATC+AGG 0.451302 5_4:+46086219 None:intergenic
TTACCATTAACTATGGTATG+TGG 0.452309 5_4:+46086577 None:intergenic
ATATTCTATGGGCTAGCTTA+GGG 0.459065 5_4:-46083881 Msa0853950:three_prime_UTR
TTGATGAGTTATGTGATGAA+TGG 0.460291 5_4:-46087420 Msa0853950:CDS
TTGATATATTAAGCTAATGA+TGG 0.463440 5_4:-46091022 Msa0853950:exon
AATTTCTTATGCAGTGCTGC+TGG 0.466285 5_4:-46086601 Msa0853950:intron
AAATAAACAATTGGTGACTC+TGG 0.467192 5_4:+46084230 None:intergenic
ATGACAACTATTAAATTATG+TGG 0.472224 5_4:-46091412 Msa0853950:five_prime_UTR
TATGTAATGTAATATTCTAT+GGG 0.473176 5_4:-46083892 Msa0853950:three_prime_UTR
ATGCGAGATTCAGAAATGAT+AGG 0.477325 5_4:+46091305 None:intergenic
AGAGGTCTCACTGAACACTA+TGG 0.480877 5_4:-46084981 Msa0853950:CDS
GCACTATGAACCACCAGTGC+TGG 0.487834 5_4:-46087359 Msa0853950:CDS
AGATCTTATAACTGCTGCTA+TGG 0.488053 5_4:-46084830 Msa0853950:CDS
TCGTTTCACTCTCAATCATA+AGG 0.489635 5_4:-46091267 Msa0853950:intron
TTGAGATTAAAGAAGTCAAC+GGG 0.490251 5_4:-46084209 Msa0853950:CDS
TTAAGTTTCTAATTGTGAGT+TGG 0.490719 5_4:-46083802 Msa0853950:three_prime_UTR
GGCATCTGAATCATTGAAAA+GGG 0.490844 5_4:-46083947 Msa0853950:CDS
ATTGGCTACTGCAGGGTTGT+TGG 0.493292 5_4:-46084282 Msa0853950:intron
ATAAGCACACCAAGAATTTG+AGG 0.494318 5_4:-46085763 Msa0853950:CDS
TATCTCGATTCGCTTCTGCT+TGG 0.498873 5_4:+46091454 None:intergenic
TTGCAGCGATTGAGTAGCTC+TGG 0.506343 5_4:-46084591 Msa0853950:intron
TGATGAGTTATGTGATGAAT+GGG 0.510790 5_4:-46087419 Msa0853950:CDS
TGCTGCTATGGGACATGCAT+TGG 0.515548 5_4:-46084818 Msa0853950:CDS
ACATGCATGAGTGAAATTGA+AGG 0.518608 5_4:-46091062 Msa0853950:five_prime_UTR
GCATCAAACCTTGTTTGTCA+AGG 0.523898 5_4:+46090728 None:intergenic
AGAGAAGGAATAAGCGGTTG+TGG 0.527869 5_4:+46087394 None:intergenic
ATCTTATTCCTACAGGCAAA+CGG 0.529325 5_4:+46084010 None:intergenic
TGTAATCACCTCTCCAGCAC+TGG 0.535327 5_4:+46087346 None:intergenic
GTGCTTGGAAGTTCTGGAAG+AGG 0.536425 5_4:-46084999 Msa0853950:CDS
GCTCTAGAGAAATATGGTGT+TGG 0.536576 5_4:-46086394 Msa0853950:CDS
CAGGGATGAAGGAGTCCACT+GGG 0.540737 5_4:-46085888 Msa0853950:CDS
GGAAAACCTACCAATATGCT+AGG 0.546645 5_4:+46087133 None:intergenic
CATCAAACCTTGTTTGTCAA+GGG 0.555805 5_4:+46090729 None:intergenic
GATCTTATAACTGCTGCTAT+GGG 0.556581 5_4:-46084829 Msa0853950:CDS
TACCATTAACTATGGTATGT+GGG 0.558768 5_4:+46086578 None:intergenic
ACAAACAATCTTATTCCTAC+AGG 0.559718 5_4:+46084003 None:intergenic
ACAGGGATGAAGGAGTCCAC+TGG 0.559845 5_4:-46085889 Msa0853950:intron
CAATTGTTCCATAAAACCCA+CGG 0.560580 5_4:+46086359 None:intergenic
TGACTCGCAATCGTGAAGCC+TGG 0.563804 5_4:+46084254 None:intergenic
TGCATATCTTTATCAAGAGA+AGG 0.565672 5_4:+46087379 None:intergenic
CCTTAACCTTGCAATAGCTA+TGG 0.565729 5_4:+46087093 None:intergenic
TGCAAGAGTTATAGATCACC+AGG 0.568076 5_4:-46084767 Msa0853950:intron
GCAGGGTTGTTGGAAATACC+AGG 0.569040 5_4:-46084272 Msa0853950:intron
TTGGTTCATGTGGTCCCCGT+GGG 0.570350 5_4:-46086375 Msa0853950:CDS
TAAAAGACCCTTGACAAACA+AGG 0.570466 5_4:-46090736 Msa0853950:intron
AACATTGCTATGTTATGGAA+AGG 0.573175 5_4:-46084465 Msa0853950:intron
TAAGATTGTTTGTTTCTGCA+GGG 0.573662 5_4:-46083993 Msa0853950:CDS
ATTTAATAGTTGTCATGATG+CGG 0.581002 5_4:+46091419 None:intergenic
TTTGAGATTAAAGAAGTCAA+CGG 0.584081 5_4:-46084210 Msa0853950:CDS
AATTTAATGATATCATCTAA+GGG 0.585413 5_4:+46085074 None:intergenic
AGCAGGAATAGCACTGAACA+TGG 0.585997 5_4:+46086185 None:intergenic
AAGTTTCTAATTGTGAGTTG+GGG 0.587959 5_4:-46083800 Msa0853950:three_prime_UTR
CATGCATTGGCCACAGAAGG+AGG 0.588651 5_4:-46084805 Msa0853950:CDS
AATTGTTCCATAAAACCCAC+GGG 0.590052 5_4:+46086360 None:intergenic
GGACATGCATTGGCCACAGA+AGG 0.590206 5_4:-46084808 Msa0853950:CDS
AAAACTATAGCTCTTGCAGA+AGG 0.592321 5_4:+46090937 None:intergenic
GTCCACTGGGGAATACAGAA+TGG 0.593062 5_4:-46085875 Msa0853950:CDS
TGTTGTCGAAGCTCTCTACC+AGG 0.597185 5_4:-46085732 Msa0853950:intron
ATGAACCACCAGTGCTGGAG+AGG 0.602723 5_4:-46087354 Msa0853950:intron
ACAGAAGGAGGATTCTGCAC+CGG 0.604655 5_4:-46084793 Msa0853950:CDS
GGTGCAGAATCCTCCTTCTG+TGG 0.610091 5_4:+46084795 None:intergenic
GACAAGTGCCGTTTGCCTGT+AGG 0.612786 5_4:-46084018 Msa0853950:CDS
ATGAGCCCTAGCATATTGGT+AGG 0.620724 5_4:-46087139 Msa0853950:CDS
AATCACCTCTCCAGCACTGG+TGG 0.628042 5_4:+46087349 None:intergenic
AAATATGGTGTTGGTTCATG+TGG 0.629485 5_4:-46086385 Msa0853950:CDS
ATGGCTACCATGTCAGAAGG+TGG 0.633468 5_4:+46087112 None:intergenic
GAAAACCTACCAATATGCTA+GGG 0.634155 5_4:+46087134 None:intergenic
GTTGGTTCATGTGGTCCCCG+TGG 0.636228 5_4:-46086376 Msa0853950:CDS
TGGTAGCCATAGCTATTGCA+AGG 0.638301 5_4:-46087099 Msa0853950:intron
GCAGCGCTTGCAAGATATGG+AGG 0.640184 5_4:+46084546 None:intergenic
GCTATGGCTACCATGTCAGA+AGG 0.647521 5_4:+46087109 None:intergenic
TTATCAAGAGAAGGAATAAG+CGG 0.647888 5_4:+46087388 None:intergenic
TTCAGAGTCTGATCTTCACA+AGG 0.660377 5_4:-46083968 Msa0853950:CDS
AAGCCCAAGATAGTTTGCTG+AGG 0.686766 5_4:+46086537 None:intergenic
ATGTGGAACGAGATCTGACG+TGG 0.687610 5_4:-46091395 Msa0853950:five_prime_UTR
GGCCATTCTGTATTCCCCAG+TGG 0.696448 5_4:+46085873 None:intergenic
AGGAATAGCACTGAACATGG+TGG 0.728012 5_4:+46086188 None:intergenic
AGGGATGAAGGAGTCCACTG+GGG 0.777778 5_4:-46085887 Msa0853950:CDS
ATTGTTCCATAAAACCCACG+GGG 0.815269 5_4:+46086361 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTAGTATTAAAATCAA+TGG + chr5_4:46085366-46085385 None:intergenic 10.0%
!!! TTGATTTTAATACTAATTAA+TGG - chr5_4:46085366-46085385 Msa0853950:intron 10.0%
!! AAAAAAAATTAGAAACTAAA+GGG + chr5_4:46088230-46088249 None:intergenic 10.0%
!!! TATTTTAAAAAATGGAAAAT+TGG + chr5_4:46088601-46088620 None:intergenic 10.0%
!! AAAAAAGAATTTATTGATAT+GGG + chr5_4:46088757-46088776 None:intergenic 10.0%
!! AAAAAAAGAATTTATTGATA+TGG + chr5_4:46088758-46088777 None:intergenic 10.0%
!! TTATATTTACTTTATATTGT+AGG - chr5_4:46088803-46088822 Msa0853950:intron 10.0%
!!! TAATTTTGTATTTTTTTAAC+AGG - chr5_4:46089327-46089346 Msa0853950:intron 10.0%
!!! AATTTTGTATTTTTTTAACA+GGG - chr5_4:46089328-46089347 Msa0853950:intron 10.0%
!!! AAATTAAGAATTTATTTTCA+AGG - chr5_4:46090549-46090568 Msa0853950:intron 10.0%
!! TCCAAATAAATAAATTAAAA+AGG - chr5_4:46090882-46090901 Msa0853950:intron 10.0%
!!! ATAGTTTTTGGATATAATTT+TGG - chr5_4:46084312-46084331 Msa0853950:intron 15.0%
!!! ATCTTTTACTTTTTACTTTA+TGG - chr5_4:46084364-46084383 Msa0853950:intron 15.0%
!!! TCTAAAATTTATTAATGAGA+AGG - chr5_4:46085292-46085311 Msa0853950:intron 15.0%
!! CTAAAATTTATTAATGAGAA+GGG - chr5_4:46085293-46085312 Msa0853950:intron 15.0%
!!! AATTATTTTTGATGAGATAA+TGG - chr5_4:46085774-46085793 Msa0853950:CDS 15.0%
!!! TAAAATTAAAATTGATGGTT+AGG - chr5_4:46085975-46085994 Msa0853950:intron 15.0%
!!! AATTAGGATTTTGTTTTTAA+AGG - chr5_4:46086054-46086073 Msa0853950:intron 15.0%
!! AACTATTAAATTACAATGTT+AGG - chr5_4:46086995-46087014 Msa0853950:intron 15.0%
!! ACTATTAAATTACAATGTTA+GGG - chr5_4:46086996-46087015 Msa0853950:intron 15.0%
!! ATTTAACAATAAAATGTCAT+AGG - chr5_4:46087418-46087437 Msa0853950:CDS 15.0%
!!! TTTTTGGTTATAAATTAATG+TGG - chr5_4:46087686-46087705 Msa0853950:intron 15.0%
!! TAAAATGATAAAAATAGATG+AGG + chr5_4:46087933-46087952 None:intergenic 15.0%
!!! TAAATTCATGAACTTTTTTT+AGG - chr5_4:46088072-46088091 Msa0853950:intron 15.0%
!! GAAAAAAAATTAGAAACTAA+AGG + chr5_4:46088231-46088250 None:intergenic 15.0%
!! ATTGAAGTTAAAAATAAAGA+AGG - chr5_4:46088393-46088412 Msa0853950:intron 15.0%
!!! ACAATCAGTATTTTAAAAAA+TGG + chr5_4:46088609-46088628 None:intergenic 15.0%
!!! AATATTAAAGTTTGTTTTTG+AGG - chr5_4:46088907-46088926 Msa0853950:intron 15.0%
!! AAGTATTAAAAACACAAATT+GGG - chr5_4:46089728-46089747 Msa0853950:intron 15.0%
!!! AGAATTCTGAAAATTTTAAA+AGG + chr5_4:46090128-46090147 None:intergenic 15.0%
!!! TTTTAAAATTTTCAGAATTC+TGG - chr5_4:46090127-46090146 Msa0853950:intron 15.0%
!! AATTTAATGATATCATCTAA+GGG + chr5_4:46090163-46090182 None:intergenic 15.0%
!! TTAAATTGAAGGAAAAATAT+CGG - chr5_4:46090176-46090195 Msa0853950:intron 15.0%
!! TTCAACTTTGTTAATATATT+GGG + chr5_4:46090745-46090764 None:intergenic 15.0%
!!! GCCTTTTTAATTTATTTATT+TGG + chr5_4:46090886-46090905 None:intergenic 15.0%
!! TTTAATCTCAAATAAACAAT+TGG + chr5_4:46091016-46091035 None:intergenic 15.0%
!! AGAATATTACATTACATAAA+AGG + chr5_4:46091340-46091359 None:intergenic 15.0%
!! TTATGTAATGTAATATTCTA+TGG - chr5_4:46091341-46091360 Msa0853950:five_prime_UTR 15.0%
!! TATGTAATGTAATATTCTAT+GGG - chr5_4:46091342-46091361 Msa0853950:five_prime_UTR 15.0%
!!! AAATTTGACTTTTCTTCTTT+TGG + chr5_4:46083714-46083733 None:intergenic 20.0%
!! ATGACAACTATTAAATTATG+TGG - chr5_4:46083822-46083841 Msa0853950:three_prime_UTR 20.0%
!!! TTTTAATTTAACGGTTATGA+TGG + chr5_4:46083867-46083886 None:intergenic 20.0%
!!! TTTCGATTCCATTTTTTAAT+TGG - chr5_4:46084051-46084070 Msa0853950:CDS 20.0%
!! TAAGCATTCCAATTAAAAAA+TGG + chr5_4:46084062-46084081 None:intergenic 20.0%
!!! TTAATTTTCTTATACTTTGC+AGG - chr5_4:46084085-46084104 Msa0853950:intron 20.0%
!! TTGATATATTAAGCTAATGA+TGG - chr5_4:46084212-46084231 Msa0853950:CDS 20.0%
!!! TTTACTTTTTACTTTATGGA+TGG - chr5_4:46084368-46084387 Msa0853950:intron 20.0%
!!! TTTGATTTGTTTTACTTTGA+AGG - chr5_4:46084403-46084422 Msa0853950:intron 20.0%
!!! ATTTATTGAAGTTTTTCTCT+TGG - chr5_4:46084432-46084451 Msa0853950:intron 20.0%
!! AGATTATTAGATTAATGAGT+TGG - chr5_4:46084945-46084964 Msa0853950:intron 20.0%
!!! GTTTCTCTTATAATTTTTCT+AGG + chr5_4:46085115-46085134 None:intergenic 20.0%
!! TAGTATTAAAATCAATGGTT+AGG + chr5_4:46085361-46085380 None:intergenic 20.0%
!! TCTTCTAAATTCAATTCTTT+GGG + chr5_4:46085562-46085581 None:intergenic 20.0%
!! TTCTTCTAAATTCAATTCTT+TGG + chr5_4:46085563-46085582 None:intergenic 20.0%
!! AATTGAATTTAGAAGAACTT+CGG - chr5_4:46085566-46085585 Msa0853950:intron 20.0%
!!! ATACCATTATAGGTTTTTTT+TGG - chr5_4:46085609-46085628 Msa0853950:intron 20.0%
!!! TACCATTATAGGTTTTTTTT+GGG - chr5_4:46085610-46085629 Msa0853950:intron 20.0%
!! AAAATATCATTCAATTGACA+TGG - chr5_4:46085702-46085721 Msa0853950:intron 20.0%
!!! ACAATAGAAGATTTTTGATT+CGG + chr5_4:46085877-46085896 None:intergenic 20.0%
!! AGTATATTAACCTAATAATG+AGG - chr5_4:46085923-46085942 Msa0853950:intron 20.0%
!! ATCCTAATTAATAATGAGAA+GGG + chr5_4:46086043-46086062 None:intergenic 20.0%
!! AATCCTAATTAATAATGAGA+AGG + chr5_4:46086044-46086063 None:intergenic 20.0%
!!! TTAAAGGTAAACTGATTTAT+TGG - chr5_4:46086070-46086089 Msa0853950:intron 20.0%
!!! AGTGGTTTTTATTAATGTTT+AGG - chr5_4:46086175-46086194 Msa0853950:CDS 20.0%
!! TCTATTTAGATTTAAGTGTT+TGG + chr5_4:46086214-46086233 None:intergenic 20.0%
!!! TTTGGTTTTTAGTAATTCTA+TGG - chr5_4:46086253-46086272 Msa0853950:CDS 20.0%
!! ATTTCTTAATATTCTTCAAG+AGG - chr5_4:46086290-46086309 Msa0853950:intron 20.0%
!! TATGTTCAGAAATAAAAGTA+TGG + chr5_4:46086391-46086410 None:intergenic 20.0%
!!! TATTGATTCTTAAAACTTGA+AGG + chr5_4:46086477-46086496 None:intergenic 20.0%
!! GTTGTAAAATTCAAGAATTT+AGG - chr5_4:46086620-46086639 Msa0853950:intron 20.0%
!!! AGTAATCTTTTACACATTTA+GGG + chr5_4:46086675-46086694 None:intergenic 20.0%
!!! AAGTAATCTTTTACACATTT+AGG + chr5_4:46086676-46086695 None:intergenic 20.0%
!! CTTAAAAATATAATACCATC+AGG - chr5_4:46086715-46086734 Msa0853950:intron 20.0%
!!! TACTTTGATTTATTATGAAG+TGG + chr5_4:46086761-46086780 None:intergenic 20.0%
!! GTTTGATCTTATCTATTATT+GGG + chr5_4:46086820-46086839 None:intergenic 20.0%
!! TGTTTGATCTTATCTATTAT+TGG + chr5_4:46086821-46086840 None:intergenic 20.0%
!!! TCTTTTTTATATCACATTCT+TGG + chr5_4:46086974-46086993 None:intergenic 20.0%
!!! TCTTGGTATTTTACTATTTT+AGG - chr5_4:46087027-46087046 Msa0853950:intron 20.0%
!! TAAAATCAAATTTGTAGTTG+AGG + chr5_4:46087497-46087516 None:intergenic 20.0%
!!! AACAATTTTCCTATTTTCAT+TGG + chr5_4:46087572-46087591 None:intergenic 20.0%
!! AATTTATTCATAATTTCTGC+AGG - chr5_4:46087788-46087807 Msa0853950:intron 20.0%
!! GAAAACATAAGATTATTTCA+GGG + chr5_4:46088012-46088031 None:intergenic 20.0%
!! AGAAAACATAAGATTATTTC+AGG + chr5_4:46088013-46088032 None:intergenic 20.0%
!! TATGATATAAGTTAACAAGT+CGG + chr5_4:46088349-46088368 None:intergenic 20.0%
!! TTAACTTATATCATAGCATA+TGG - chr5_4:46088354-46088373 Msa0853950:intron 20.0%
!! TAACTTATATCATAGCATAT+GGG - chr5_4:46088355-46088374 Msa0853950:intron 20.0%
!! TTTAAAAAATGGAAAATTGG+TGG + chr5_4:46088598-46088617 None:intergenic 20.0%
!! ATTCAATTCTATACTCTTAT+GGG - chr5_4:46089019-46089038 Msa0853950:intron 20.0%
!! TAAAAAAGGAGATATAATTG+TGG - chr5_4:46089077-46089096 Msa0853950:intron 20.0%
!! GACAAAATATTGAACAAAAA+TGG + chr5_4:46089135-46089154 None:intergenic 20.0%
!! ACCACATATATAGAATTATT+TGG - chr5_4:46089189-46089208 Msa0853950:intron 20.0%
!! TCCAAATAATTCTATATATG+TGG + chr5_4:46089193-46089212 None:intergenic 20.0%
!! CATATATAGAATTATTTGGA+TGG - chr5_4:46089193-46089212 Msa0853950:intron 20.0%
!!! TCTTTACTTTTTTGTTACAA+TGG - chr5_4:46089227-46089246 Msa0853950:intron 20.0%
!! AATATCAGAGTTATATAAAG+TGG + chr5_4:46089283-46089302 None:intergenic 20.0%
!!! AATAAAAATATAGAAGTGCA+CGG + chr5_4:46089547-46089566 None:intergenic 20.0%
!! CAAGTATTAAAAACACAAAT+TGG - chr5_4:46089727-46089746 Msa0853950:intron 20.0%
!! CAATTTAATGATATCATCTA+AGG + chr5_4:46090164-46090183 None:intergenic 20.0%
!! AGATGATATCATTAAATTGA+AGG - chr5_4:46090165-46090184 Msa0853950:intron 20.0%
!! TAGAAATTTGAATGCATTAA+CGG + chr5_4:46090341-46090360 None:intergenic 20.0%
!! CTTCAACTTTGTTAATATAT+TGG + chr5_4:46090746-46090765 None:intergenic 20.0%
!!! CAATGTTTATTTCTTACTTT+CGG - chr5_4:46091110-46091129 Msa0853950:five_prime_UTR 20.0%
!!! TTGCTTATGAATATTTTTTC+CGG - chr5_4:46091459-46091478 Msa0853950:five_prime_UTR 20.0%
! AGTTAAGAAGAAAGCAAATA+AGG - chr5_4:46083742-46083761 Msa0853950:three_prime_UTR 25.0%
! ATTTAATAGTTGTCATGATG+CGG + chr5_4:46083818-46083837 None:intergenic 25.0%
!! ATTTTGAATCAGAATCTAAG+AGG + chr5_4:46084026-46084045 None:intergenic 25.0%
!! ATTTTGTGAAAATTGACTAG+TGG - chr5_4:46084142-46084161 Msa0853950:intron 25.0%
!!! GTTTTTGGATATAATTTTGG+TGG - chr5_4:46084315-46084334 Msa0853950:intron 25.0%
! TCTCAAATTATTATCAGTGT+CGG + chr5_4:46084586-46084605 None:intergenic 25.0%
! GAGAAAATCACATAATTCAA+TGG - chr5_4:46084602-46084621 Msa0853950:intron 25.0%
! AAATGAAAACATTAGAGAGT+TGG - chr5_4:46084788-46084807 Msa0853950:CDS 25.0%
! AATGAAAACATTAGAGAGTT+GGG - chr5_4:46084789-46084808 Msa0853950:CDS 25.0%
! TATTGTAGATTAGATGGTTT+GGG - chr5_4:46084820-46084839 Msa0853950:CDS 25.0%
! AGTATAGTTGGAATCTATTA+AGG - chr5_4:46084878-46084897 Msa0853950:intron 25.0%
!! TAATGAGTTGGATCAAAATA+CGG - chr5_4:46084957-46084976 Msa0853950:intron 25.0%
! TAACTCTTAATACTTACTCT+TGG + chr5_4:46085330-46085349 None:intergenic 25.0%
! TAAAATCAATGGTTAGGATT+TGG + chr5_4:46085355-46085374 None:intergenic 25.0%
! AGTATATTAACCTAATAGTG+AGG + chr5_4:46085413-46085432 None:intergenic 25.0%
!!! TGATTCTTTTAGGTTAGTAT+AGG + chr5_4:46085534-46085553 None:intergenic 25.0%
! CTTCTAAATTCAATTCTTTG+GGG + chr5_4:46085561-46085580 None:intergenic 25.0%
! ATTGAATTTAGAAGAACTTC+GGG - chr5_4:46085567-46085586 Msa0853950:intron 25.0%
! TACCCAAAAAAAACCTATAA+TGG + chr5_4:46085615-46085634 None:intergenic 25.0%
!!! AATTGACATGGTTTTTTAGA+GGG - chr5_4:46085714-46085733 Msa0853950:intron 25.0%
! CAATACATTAGATACATCAA+TGG + chr5_4:46085844-46085863 None:intergenic 25.0%
! TGCTATTAATCCTCATTATT+AGG + chr5_4:46085936-46085955 None:intergenic 25.0%
!! TAAAATTGATGGTTAGGATT+TGG - chr5_4:46085981-46086000 Msa0853950:intron 25.0%
! ATCCCTTCTCATTATTAATT+AGG - chr5_4:46086038-46086057 Msa0853950:intron 25.0%
! TATTTCATCGAAATGCTAAT+AGG - chr5_4:46086095-46086114 Msa0853950:intron 25.0%
!! TGATATACACTTATCTGTTT+TGG - chr5_4:46086235-46086254 Msa0853950:CDS 25.0%
! TAATTCTATGGATCTAACAT+GGG - chr5_4:46086265-46086284 Msa0853950:CDS 25.0%
!!! CTGAACATATGCTTTTTTTA+TGG - chr5_4:46086402-46086421 Msa0853950:CDS 25.0%
!!! TATGCTTTTTTTATGGTACT+TGG - chr5_4:46086409-46086428 Msa0853950:CDS 25.0%
!! ATTCTTGAATTTTACAACCT+TGG + chr5_4:46086618-46086637 None:intergenic 25.0%
!! GTAATCTTTTACACATTTAG+GGG + chr5_4:46086674-46086693 None:intergenic 25.0%
! AACAAATGTTATCAATCTCT+TGG - chr5_4:46086837-46086856 Msa0853950:intron 25.0%
!!! ACTGTTTTGATCATGAAAAT+GGG + chr5_4:46087650-46087669 None:intergenic 25.0%
!!! AACTGTTTTGATCATGAAAA+TGG + chr5_4:46087651-46087670 None:intergenic 25.0%
!! ATTTTCATGATCAAAACAGT+TGG - chr5_4:46087650-46087669 Msa0853950:intron 25.0%
! AACTTATATCATAGCATATG+GGG - chr5_4:46088356-46088375 Msa0853950:intron 25.0%
! AACTTCTTTACCATTAACTA+TGG + chr5_4:46088667-46088686 None:intergenic 25.0%
!! GCAAGAATAGCAAAATTTTT+AGG - chr5_4:46088988-46089007 Msa0853950:intron 25.0%
!! TAAGAGTATAGAATTGAATC+AGG + chr5_4:46089018-46089037 None:intergenic 25.0%
! GATTCAATTCTATACTCTTA+TGG - chr5_4:46089018-46089037 Msa0853950:intron 25.0%
! AATTCTATATATGTGGTGTA+TGG + chr5_4:46089186-46089205 None:intergenic 25.0%
!! ATAACTCTGATATTTCAAGT+AGG - chr5_4:46089289-46089308 Msa0853950:intron 25.0%
!!! TATTTTTTTAACAGGGATGA+AGG - chr5_4:46089335-46089354 Msa0853950:intron 25.0%
!! TTTTATCTGTCACGAATTAT+GGG - chr5_4:46089825-46089844 Msa0853950:intron 25.0%
!!! AGAATAGTTGATAATGTTAG+CGG + chr5_4:46090015-46090034 None:intergenic 25.0%
! ATTCTTAATTTCAGTACACT+TGG + chr5_4:46090540-46090559 None:intergenic 25.0%
! GTATTGTAGTGTCTATTATT+TGG - chr5_4:46090833-46090852 Msa0853950:intron 25.0%
!! AACTTTTATATGAGATGCAT+TGG - chr5_4:46090934-46090953 Msa0853950:CDS 25.0%
!! TTTGAGATTAAAGAAGTCAA+CGG - chr5_4:46091024-46091043 Msa0853950:exon 25.0%
! TTAAGTTTCTAATTGTGAGT+TGG - chr5_4:46091432-46091451 Msa0853950:five_prime_UTR 25.0%
! TAAGTTTCTAATTGTGAGTT+GGG - chr5_4:46091433-46091452 Msa0853950:five_prime_UTR 25.0%
GGTGGTAATATTTCTTGTTA+TGG - chr5_4:46084333-46084352 Msa0853950:intron 30.0%
! TATTGAAGTTTTTCTCTTGG+TGG - chr5_4:46084435-46084454 Msa0853950:intron 30.0%
! GTTTTACCATGAATTGTACA+TGG + chr5_4:46084750-46084769 None:intergenic 30.0%
ATGGTAAAACTAGACTAGAT+AGG - chr5_4:46084760-46084779 Msa0853950:intron 30.0%
ATGAAAACATTAGAGAGTTG+GGG - chr5_4:46084790-46084809 Msa0853950:CDS 30.0%
CAAACCATCTAATCTACAAT+AGG + chr5_4:46084821-46084840 None:intergenic 30.0%
CTATTGTAGATTAGATGGTT+TGG - chr5_4:46084819-46084838 Msa0853950:CDS 30.0%
AGACAATAGAGTAGATTAGA+TGG - chr5_4:46084855-46084874 Msa0853950:intron 30.0%
TAGATTAGATGGAGTATAGT+TGG - chr5_4:46084866-46084885 Msa0853950:intron 30.0%
TAGTTGGAATCTATTAAGGA+AGG - chr5_4:46084882-46084901 Msa0853950:intron 30.0%
! GTTTCTTGCATAGTTTTTCT+AGG + chr5_4:46084908-46084927 None:intergenic 30.0%
TTGTTGTACAGTAGATCAAA+TGG - chr5_4:46085057-46085076 Msa0853950:CDS 30.0%
TGCTATTAATCCTCACTATT+AGG - chr5_4:46085400-46085419 Msa0853950:intron 30.0%
TACAGAGCTTATGTTTAAGA+AGG + chr5_4:46085900-46085919 None:intergenic 30.0%
!! TAAATTCAATTCTTTGGGGT+CGG + chr5_4:46085557-46085576 None:intergenic 30.0%
!!! TTTTTTTCCAACGTCTTTCT+TGG - chr5_4:46085650-46085669 Msa0853950:intron 30.0%
!!! CAATTGACATGGTTTTTTAG+AGG - chr5_4:46085713-46085732 Msa0853950:intron 30.0%
TACAGAGCTTATGTTTAAGA+AGG - chr5_4:46085900-46085919 Msa0853950:intron 30.0%
TAACTCTTAACACTTACTCT+TGG - chr5_4:46086006-46086025 Msa0853950:intron 30.0%
GTAATTCTATGGATCTAACA+TGG - chr5_4:46086264-46086283 Msa0853950:CDS 30.0%
AATTCTATGGATCTAACATG+GGG - chr5_4:46086266-46086285 Msa0853950:CDS 30.0%
! TTTTTATGGTACTTGGAAAC+AGG - chr5_4:46086416-46086435 Msa0853950:intron 30.0%
! TCTTTGTTTGTGATGCATTT+AGG - chr5_4:46086566-46086585 Msa0853950:CDS 30.0%
!! TTGAATTTTTGTTGTCCTGA+TGG + chr5_4:46086733-46086752 None:intergenic 30.0%
TATATCACATTCTTGGTTGA+GGG + chr5_4:46086967-46086986 None:intergenic 30.0%
TTATATCACATTCTTGGTTG+AGG + chr5_4:46086968-46086987 None:intergenic 30.0%
! ATTACAATGTTAGGGCTTTT+TGG - chr5_4:46087004-46087023 Msa0853950:intron 30.0%
GTTGTAATTGATCAGTGAAA+TGG + chr5_4:46087122-46087141 None:intergenic 30.0%
CCTTTGACATCTCAAAAAAA+TGG + chr5_4:46087546-46087565 None:intergenic 30.0%
!!! CCATTTTTTTGAGATGTCAA+AGG - chr5_4:46087543-46087562 Msa0853950:intron 30.0%
!!! TGGTTGTCTTCTAACTTTTT+TGG - chr5_4:46087670-46087689 Msa0853950:intron 30.0%
AGAATGTACAAGAACTAACA+TGG + chr5_4:46087730-46087749 None:intergenic 30.0%
ATTCTTATCCAAGATTCATC+AGG - chr5_4:46087745-46087764 Msa0853950:intron 30.0%
AAATACAACCTGATGAATCT+TGG + chr5_4:46087756-46087775 None:intergenic 30.0%
TTGATGAGTTATGTGATGAA+TGG - chr5_4:46087814-46087833 Msa0853950:intron 30.0%
TGATGAGTTATGTGATGAAT+GGG - chr5_4:46087815-46087834 Msa0853950:intron 30.0%
TTATCAAGAGAAGGAATAAG+CGG + chr5_4:46087849-46087868 None:intergenic 30.0%
TGCATATCTTTATCAAGAGA+AGG + chr5_4:46087858-46087877 None:intergenic 30.0%
ACATAAGATTATTTCAGGGA+AGG + chr5_4:46088008-46088027 None:intergenic 30.0%
! ACACTAATTTTCTTTATCGC+AGG + chr5_4:46088262-46088281 None:intergenic 30.0%
AAGTTCTCATGTGATTTCAT+AGG - chr5_4:46088289-46088308 Msa0853950:intron 30.0%
GGAAAATGTATGACATACAA+GGG + chr5_4:46088328-46088347 None:intergenic 30.0%
ATATTAGATTGCGATGATTG+AGG - chr5_4:46088419-46088438 Msa0853950:intron 30.0%
TATTAGATTGCGATGATTGA+GGG - chr5_4:46088420-46088439 Msa0853950:intron 30.0%
AATCACGTAAATCAGACATT+AGG - chr5_4:46088500-46088519 Msa0853950:intron 30.0%
TACCATTAACTATGGTATGT+GGG + chr5_4:46088659-46088678 None:intergenic 30.0%
TTACCATTAACTATGGTATG+TGG + chr5_4:46088660-46088679 None:intergenic 30.0%
GTCATCAAAAGTTACTTGTA+AGG - chr5_4:46088724-46088743 Msa0853950:intron 30.0%
!!! CTTTTTTTTGAACACTGCTT+TGG - chr5_4:46088770-46088789 Msa0853950:intron 30.0%
! GTTTTATGGAACAATTGGTA+AGG - chr5_4:46088881-46088900 Msa0853950:intron 30.0%
! ATTCCTGCTTTCTCTAAAAA+AGG - chr5_4:46089063-46089082 Msa0853950:intron 30.0%
!! GTATTTTAAGCACAATGACA+TGG - chr5_4:46089409-46089428 Msa0853950:intron 30.0%
AATATAACGCCTCAAATTCT+TGG + chr5_4:46089483-46089502 None:intergenic 30.0%
TAATATAGACAACATCTACC+TGG + chr5_4:46089523-46089542 None:intergenic 30.0%
CTTCTATATTGTGTTTCGAA+TGG - chr5_4:46089634-46089653 Msa0853950:intron 30.0%
TTAAAGAACGACTTTGCAAT+AGG + chr5_4:46089782-46089801 None:intergenic 30.0%
! GTTTTATCTGTCACGAATTA+TGG - chr5_4:46089824-46089843 Msa0853950:intron 30.0%
! TCTTTCAGTAGTTTTCATAC+TGG - chr5_4:46090051-46090070 Msa0853950:intron 30.0%
!!! ATATCGGTTTCGTATTTTAC+TGG - chr5_4:46090192-46090211 Msa0853950:intron 30.0%
ATTCAAATTTCTACTGCTGT+TGG - chr5_4:46090348-46090367 Msa0853950:intron 30.0%
!! TACTGATTCATAAACCAACT+TGG - chr5_4:46090510-46090529 Msa0853950:intron 30.0%
! ATATATTGGGATTTTCGTCA+AGG + chr5_4:46090732-46090751 None:intergenic 30.0%
AGAACAACATTGCTATGTTA+TGG - chr5_4:46090764-46090783 Msa0853950:CDS 30.0%
AACATTGCTATGTTATGGAA+AGG - chr5_4:46090769-46090788 Msa0853950:CDS 30.0%
! AAATAAACAATTGGTGACTC+TGG + chr5_4:46091007-46091026 None:intergenic 30.0%
TTGAGATTAAAGAAGTCAAC+GGG - chr5_4:46091025-46091044 Msa0853950:exon 30.0%
ACTTATTGTTCTGTATTCAC+AGG - chr5_4:46091143-46091162 Msa0853950:intron 30.0%
GAAAGAAGATTCTGTATTTG+TGG - chr5_4:46091170-46091189 Msa0853950:intron 30.0%
ACAAACAATCTTATTCCTAC+AGG + chr5_4:46091234-46091253 None:intergenic 30.0%
!! ATAAGATTGTTTGTTTCTGC+AGG - chr5_4:46091240-46091259 Msa0853950:intron 30.0%
!! TAAGATTGTTTGTTTCTGCA+GGG - chr5_4:46091241-46091260 Msa0853950:intron 30.0%
AAGTTTCTAATTGTGAGTTG+GGG - chr5_4:46091434-46091453 Msa0853950:five_prime_UTR 30.0%
! ATTAACACTTTTGACATGCA+AGG + chr5_4:46091489-46091508 None:intergenic 30.0%
ATGCGAGATTCAGAAATGAT+AGG + chr5_4:46083932-46083951 None:intergenic 35.0%
TCGTTTCACTCTCAATCATA+AGG - chr5_4:46083967-46083986 Msa0853950:CDS 35.0%
TTCACTCTCAATCATAAGGT+AGG - chr5_4:46083971-46083990 Msa0853950:CDS 35.0%
ACATGCATGAGTGAAATTGA+AGG - chr5_4:46084172-46084191 Msa0853950:CDS 35.0%
TGGTGAACACTACGTTAAAT+TGG - chr5_4:46084253-46084272 Msa0853950:CDS 35.0%
GGTGAACACTACGTTAAATT+GGG - chr5_4:46084254-46084273 Msa0853950:CDS 35.0%
AAAACTATAGCTCTTGCAGA+AGG + chr5_4:46084300-46084319 None:intergenic 35.0%
! TCTGCAAGAGCTATAGTTTT+TGG - chr5_4:46084300-46084319 Msa0853950:intron 35.0%
! TTGTTTGTCAAGGGTCTTTT+AGG + chr5_4:46084499-46084518 None:intergenic 35.0%
TAAAAGACCCTTGACAAACA+AGG - chr5_4:46084498-46084517 Msa0853950:CDS 35.0%
! CATCAAACCTTGTTTGTCAA+GGG + chr5_4:46084508-46084527 None:intergenic 35.0%
CTTAAGCACAACTATAGACA+CGG - chr5_4:46084540-46084559 Msa0853950:CDS 35.0%
TTCAATGGAACCATATGTGT+CGG - chr5_4:46084617-46084636 Msa0853950:intron 35.0%
TCTTGTCCATGTACAATTCA+TGG - chr5_4:46084741-46084760 Msa0853950:intron 35.0%
AGCACCTATTGTAGATTAGA+TGG - chr5_4:46084814-46084833 Msa0853950:CDS 35.0%
CGGTTTACGATAGAACATTA+TGG - chr5_4:46084977-46084996 Msa0853950:CDS 35.0%
AATCCTTATCACACTAAGTG+GGG + chr5_4:46085032-46085051 None:intergenic 35.0%
CAATCCTTATCACACTAAGT+GGG + chr5_4:46085033-46085052 None:intergenic 35.0%
TCAATCCTTATCACACTAAG+TGG + chr5_4:46085034-46085053 None:intergenic 35.0%
TTGTACAGTAGATCAAATGG+AGG - chr5_4:46085060-46085079 Msa0853950:CDS 35.0%
TGTACAGTAGATCAAATGGA+GGG - chr5_4:46085061-46085080 Msa0853950:CDS 35.0%
CTGTCAGAAATCATATCTCT+TGG + chr5_4:46085150-46085169 None:intergenic 35.0%
ATACTTACTCTTGGAGTCAA+TGG + chr5_4:46085321-46085340 None:intergenic 35.0%
AAGAACTTCGGGATATGATT+CGG - chr5_4:46085578-46085597 Msa0853950:intron 35.0%
TATGAATCCAAGAAAGACGT+TGG + chr5_4:46085660-46085679 None:intergenic 35.0%
AGCTTATGCTGTAATTTCGT+CGG + chr5_4:46085806-46085825 None:intergenic 35.0%
ATCGAAATGCTAATAGGCTT+TGG - chr5_4:46086101-46086120 Msa0853950:intron 35.0%
TATGTTGTGCAGTTCAAAAG+TGG - chr5_4:46086157-46086176 Msa0853950:CDS 35.0%
AGTCTCTTAACACTTCTTTC+TGG + chr5_4:46086789-46086808 None:intergenic 35.0%
AAGTGTTAAGAGACTCATAG+TGG - chr5_4:46086794-46086813 Msa0853950:intron 35.0%
GTTATCAATCTCTTGGATAG+TGG - chr5_4:46086844-46086863 Msa0853950:intron 35.0%
ATATCACATTCTTGGTTGAG+GGG + chr5_4:46086966-46086985 None:intergenic 35.0%
AAAATACACCAGAACAGCAT+TGG - chr5_4:46087062-46087081 Msa0853950:intron 35.0%
AAATACACCAGAACAGCATT+GGG - chr5_4:46087063-46087082 Msa0853950:intron 35.0%
ACAGCAAGATAGCAAATAGA+GGG + chr5_4:46087215-46087234 None:intergenic 35.0%
AACAGCAAGATAGCAAATAG+AGG + chr5_4:46087216-46087235 None:intergenic 35.0%
!!! TCTTGCTGTTGCATTTTTTG+TGG - chr5_4:46087226-46087245 Msa0853950:intron 35.0%
ATCTACCACTGTTATCAATC+CGG + chr5_4:46087277-46087296 None:intergenic 35.0%
! TTGATAACAGTGGTAGATAG+TGG - chr5_4:46087279-46087298 Msa0853950:intron 35.0%
TGATAACAGTGGTAGATAGT+GGG - chr5_4:46087280-46087299 Msa0853950:intron 35.0%
!! CAAAGGTGTCCAATGAAAAT+AGG - chr5_4:46087560-46087579 Msa0853950:intron 35.0%
!! GGCATTCATCTACTACTTTT+TGG + chr5_4:46087615-46087634 None:intergenic 35.0%
!! GTTTTGATCATGAAAATGGG+TGG + chr5_4:46087647-46087666 None:intergenic 35.0%
AGAACTAACATGGAACACTA+TGG + chr5_4:46087720-46087739 None:intergenic 35.0%
GAAAACCTACCAATATGCTA+GGG + chr5_4:46088103-46088122 None:intergenic 35.0%
TTCTTTATCGCAGGATAAGA+AGG + chr5_4:46088253-46088272 None:intergenic 35.0%
CGGAAAATGTATGACATACA+AGG + chr5_4:46088329-46088348 None:intergenic 35.0%
!! ACTTCTGCTCTAGAGAAATA+TGG - chr5_4:46088834-46088853 Msa0853950:intron 35.0%
!! AAATATGGTGTTGGTTCATG+TGG - chr5_4:46088849-46088868 Msa0853950:intron 35.0%
AATTGTTCCATAAAACCCAC+GGG + chr5_4:46088877-46088896 None:intergenic 35.0%
CAATTGTTCCATAAAACCCA+CGG + chr5_4:46088878-46088897 None:intergenic 35.0%
!!! TCTCCTTTTTTAGAGAAAGC+AGG + chr5_4:46089069-46089088 None:intergenic 35.0%
TTGTCTGATGACATTCATGT+TGG - chr5_4:46089150-46089169 Msa0853950:intron 35.0%
TGTCTGATGACATTCATGTT+GGG - chr5_4:46089151-46089170 Msa0853950:intron 35.0%
! CAGTGCTTCTAGAAAGATAA+AGG + chr5_4:46089385-46089404 None:intergenic 35.0%
ATAAGCACACCAAGAATTTG+AGG - chr5_4:46089471-46089490 Msa0853950:intron 35.0%
TTTCGTGCAAATTGAAGCAT+TGG - chr5_4:46089691-46089710 Msa0853950:intron 35.0%
! AAACACAAATTGGGAGCATA+TGG - chr5_4:46089737-46089756 Msa0853950:intron 35.0%
GAATGCATTAACGGTAAATC+TGG + chr5_4:46090332-46090351 None:intergenic 35.0%
AGATCTTATAACTGCTGCTA+TGG - chr5_4:46090404-46090423 Msa0853950:intron 35.0%
GATCTTATAACTGCTGCTAT+GGG - chr5_4:46090405-46090424 Msa0853950:intron 35.0%
ATCTATAACTCTTGCACTTC+CGG + chr5_4:46090463-46090482 None:intergenic 35.0%
!! TATTTTCAAGGCGAAGTGAT+TGG - chr5_4:46090561-46090580 Msa0853950:intron 35.0%
GTTGAAAACACAGACATTAG+CGG + chr5_4:46090621-46090640 None:intergenic 35.0%
TTGCTATGTTATGGAAAGGT+AGG - chr5_4:46090773-46090792 Msa0853950:CDS 35.0%
! TTTCTTACTTTCGGTTTTGC+TGG - chr5_4:46091119-46091138 Msa0853950:five_prime_UTR 35.0%
ATCTTATTCCTACAGGCAAA+CGG + chr5_4:46091227-46091246 None:intergenic 35.0%
AGGCATCTGAATCATTGAAA+AGG - chr5_4:46091286-46091305 Msa0853950:five_prime_UTR 35.0%
GGCATCTGAATCATTGAAAA+GGG - chr5_4:46091287-46091306 Msa0853950:five_prime_UTR 35.0%
!! AATATTCTATGGGCTAGCTT+AGG - chr5_4:46091352-46091371 Msa0853950:five_prime_UTR 35.0%
!! ATATTCTATGGGCTAGCTTA+GGG - chr5_4:46091353-46091372 Msa0853950:five_prime_UTR 35.0%
ACGTGTTAAGCGATAGTATA+AGG - chr5_4:46091407-46091426 Msa0853950:five_prime_UTR 35.0%
GGCTTCAGCTGTTGTTAATT+TGG - chr5_4:46084233-46084252 Msa0853950:CDS 40.0%
! TTTGTCAAGGGTCTTTTAGG+AGG + chr5_4:46084496-46084515 None:intergenic 40.0%
! GCATCAAACCTTGTTTGTCA+AGG + chr5_4:46084509-46084528 None:intergenic 40.0%
! GATTAGATGGTTTGGGCATA+TGG - chr5_4:46084827-46084846 Msa0853950:CDS 40.0%
AGTTATATCGCAAGAGGCAA+AGG - chr5_4:46085085-46085104 Msa0853950:CDS 40.0%
!! TGATTTCTGACAGAGCATTG+TGG - chr5_4:46085157-46085176 Msa0853950:intron 40.0%
ACAATGTAGGGTTGACTACA+TGG + chr5_4:46085194-46085213 None:intergenic 40.0%
ATGTAGTCAACCCTACATTG+TGG - chr5_4:46085193-46085212 Msa0853950:intron 40.0%
CAAGTCCTATCCACAATGTA+GGG + chr5_4:46085206-46085225 None:intergenic 40.0%
!! TTCGGGATATGATTCGGTTT+CGG - chr5_4:46085584-46085603 Msa0853950:intron 40.0%
GGTTTCGGTGATACCATTAT+AGG - chr5_4:46085599-46085618 Msa0853950:intron 40.0%
ACACTTACTCTTGGAGTCAA+TGG - chr5_4:46086015-46086034 Msa0853950:intron 40.0%
GGTATAGACAATCACCCAAA+AGG + chr5_4:46086597-46086616 None:intergenic 40.0%
TTGGGTGATTGTCTATACCA+AGG - chr5_4:46086598-46086617 Msa0853950:intron 40.0%
CTATCTAATATGCCATGGTG+CGG + chr5_4:46086874-46086893 None:intergenic 40.0%
CACTGCTATCTAATATGCCA+TGG + chr5_4:46086879-46086898 None:intergenic 40.0%
!! ATGTTAGGGCTTTTTGGTCT+TGG - chr5_4:46087010-46087029 Msa0853950:intron 40.0%
GATTACAGTCGAAGTGTAAG+TGG + chr5_4:46087094-46087113 None:intergenic 40.0%
!!! GCTGTTGCATTTTTTGTGGT+CGG - chr5_4:46087230-46087249 Msa0853950:intron 40.0%
! CTATTCCGGATTGATAACAG+TGG - chr5_4:46087269-46087288 Msa0853950:intron 40.0%
! GGTGATTACATTTTCTCGTG+TGG - chr5_4:46087901-46087920 Msa0853950:intron 40.0%
GGAAAACCTACCAATATGCT+AGG + chr5_4:46088104-46088123 None:intergenic 40.0%
CCTTAACCTTGCAATAGCTA+TGG + chr5_4:46088144-46088163 None:intergenic 40.0%
CCATAGCTATTGCAAGGTTA+AGG - chr5_4:46088141-46088160 Msa0853950:intron 40.0%
TAGGATTACAGTTTGCACTC+TGG - chr5_4:46088519-46088538 Msa0853950:intron 40.0%
AATTTCTTATGCAGTGCTGC+TGG - chr5_4:46088633-46088652 Msa0853950:intron 40.0%
!! GCTCTAGAGAAATATGGTGT+TGG - chr5_4:46088840-46088859 Msa0853950:intron 40.0%
ATTGTTCCATAAAACCCACG+GGG + chr5_4:46088876-46088895 None:intergenic 40.0%
!! CGTGGGTTTTATGGAACAAT+TGG - chr5_4:46088876-46088895 Msa0853950:intron 40.0%
CACAGTCAAGATGTACATCT+GGG + chr5_4:46088966-46088985 None:intergenic 40.0%
TCACAGTCAAGATGTACATC+TGG + chr5_4:46088967-46088986 None:intergenic 40.0%
!! ATATGGTGTTGCTGTTAGAC+TGG - chr5_4:46089754-46089773 Msa0853950:intron 40.0%
TCATGGTATCAAAGCCTATC+GGG + chr5_4:46089937-46089956 None:intergenic 40.0%
GTCATGGTATCAAAGCCTAT+CGG + chr5_4:46089938-46089957 None:intergenic 40.0%
TAGTTCCACATCGGATAGTA+AGG + chr5_4:46089974-46089993 None:intergenic 40.0%
ATGTACCGAAAATCTCCGTT+TGG - chr5_4:46090285-46090304 Msa0853950:intron 40.0%
TGTACCGAAAATCTCCGTTT+GGG - chr5_4:46090286-46090305 Msa0853950:intron 40.0%
CATTAACGGTAAATCTGGTG+GGG + chr5_4:46090327-46090346 None:intergenic 40.0%
GCATTAACGGTAAATCTGGT+GGG + chr5_4:46090328-46090347 None:intergenic 40.0%
TGCATTAACGGTAAATCTGG+TGG + chr5_4:46090329-46090348 None:intergenic 40.0%
TGATTGTGATTGTGTTCTGC+AGG - chr5_4:46090371-46090390 Msa0853950:intron 40.0%
TGCAAGAGTTATAGATCACC+AGG - chr5_4:46090467-46090486 Msa0853950:intron 40.0%
GAGTTATAGATCACCAGGTA+TGG - chr5_4:46090472-46090491 Msa0853950:intron 40.0%
ACAAATGACACTACCATACC+TGG + chr5_4:46090488-46090507 None:intergenic 40.0%
GTACACTTGGAAATCCAAGT+TGG + chr5_4:46090527-46090546 None:intergenic 40.0%
AAAACACAGACATTAGCGGA+GGG + chr5_4:46090617-46090636 None:intergenic 40.0%
!! AGCGCTGCTACTTTCATAAA+TGG - chr5_4:46090806-46090825 Msa0853950:CDS 40.0%
! TAAAGAAGTCAACGGGTTCT+TGG - chr5_4:46091032-46091051 Msa0853950:five_prime_UTR 40.0%
!! CAATATTTTCAAGCAGGCGT+AGG + chr5_4:46091066-46091085 None:intergenic 40.0%
!! GTTCGGCAATATTTTCAAGC+AGG + chr5_4:46091072-46091091 None:intergenic 40.0%
CCCAACAATTCTTACACGTT+CGG + chr5_4:46091089-46091108 None:intergenic 40.0%
CCGAACGTGTAAGAATTGTT+GGG - chr5_4:46091086-46091105 Msa0853950:five_prime_UTR 40.0%
TTCAGAGTCTGATCTTCACA+AGG - chr5_4:46091266-46091285 Msa0853950:intron 40.0%
!! TTTTGACATGCAAGGAGTAC+CGG + chr5_4:46091481-46091500 None:intergenic 40.0%
! TATCTCGATTCGCTTCTGCT+TGG + chr5_4:46083783-46083802 None:intergenic 45.0%
ATGTCTGACACCGACACATA+TGG + chr5_4:46084630-46084649 None:intergenic 45.0%
CTTATCACACTAAGTGGGGT+CGG + chr5_4:46085028-46085047 None:intergenic 45.0%
GAGGGTAGTTATATCGCAAG+AGG - chr5_4:46085079-46085098 Msa0853950:CDS 45.0%
GTCAACCCTACATTGTGGAT+AGG - chr5_4:46085198-46085217 Msa0853950:intron 45.0%
CCAAGTCCTATCCACAATGT+AGG + chr5_4:46085207-46085226 None:intergenic 45.0%
CCTACATTGTGGATAGGACT+TGG - chr5_4:46085204-46085223 Msa0853950:intron 45.0%
ACATTGTGGATAGGACTTGG+TGG - chr5_4:46085207-46085226 Msa0853950:intron 45.0%
! TTGGGGTCGGTGATTCTTTT+AGG + chr5_4:46085544-46085563 None:intergenic 45.0%
!! GGCTCTAGTTTGTTTGTGTG+TGG - chr5_4:46086122-46086141 Msa0853950:intron 45.0%
! GAAAATGTGCTCCTGACTTG+TGG - chr5_4:46086358-46086377 Msa0853950:intron 45.0%
ATGGCAAAAGTCCACAAGTC+AGG + chr5_4:46086372-46086391 None:intergenic 45.0%
AAGTAATCGCTGTCCTTCCA+TGG - chr5_4:46086526-46086545 Msa0853950:CDS 45.0%
!! TGCATTTAGGACCTGCCTTT+TGG - chr5_4:46086579-46086598 Msa0853950:CDS 45.0%
!! GCATTTAGGACCTGCCTTTT+GGG - chr5_4:46086580-46086599 Msa0853950:CDS 45.0%
TAGACAATCACCCAAAAGGC+AGG + chr5_4:46086593-46086612 None:intergenic 45.0%
TTTAGGGGTTGAGTCTACAG+AGG + chr5_4:46086659-46086678 None:intergenic 45.0%
TACAGTCGAAGTGTAAGTGG+AGG + chr5_4:46087091-46087110 None:intergenic 45.0%
ACTACGCTCGTCTTCTATTC+CGG - chr5_4:46087255-46087274 Msa0853950:intron 45.0%
CATCAAGTATGCAGTCGACA+TGG + chr5_4:46087472-46087491 None:intergenic 45.0%
TGGTGAACATGCAGCTCTAT+GGG + chr5_4:46087595-46087614 None:intergenic 45.0%
TTGGTGAACATGCAGCTCTA+TGG + chr5_4:46087596-46087615 None:intergenic 45.0%
GAAAATGGGTGGACAGACAA+AGG + chr5_4:46087636-46087655 None:intergenic 45.0%
AGAGAAGGAATAAGCGGTTG+TGG + chr5_4:46087843-46087862 None:intergenic 45.0%
GCTTGTCAACTTCACTGCTA+TGG - chr5_4:46088033-46088052 Msa0853950:intron 45.0%
TAGGATGAGCCCTAGCATAT+TGG - chr5_4:46088091-46088110 Msa0853950:intron 45.0%
ATGAGCCCTAGCATATTGGT+AGG - chr5_4:46088095-46088114 Msa0853950:intron 45.0%
! AGGTTTTCCACCTTCTGACA+TGG - chr5_4:46088115-46088134 Msa0853950:intron 45.0%
TGGTAGCCATAGCTATTGCA+AGG - chr5_4:46088135-46088154 Msa0853950:intron 45.0%
GGCCCACATACCATAGTTAA+TGG - chr5_4:46088654-46088673 Msa0853950:intron 45.0%
! AGGAATAGCACTGAACATGG+TGG + chr5_4:46089049-46089068 None:intergenic 45.0%
! AGCAGGAATAGCACTGAACA+TGG + chr5_4:46089052-46089071 None:intergenic 45.0%
! AACACTATTGCTGCTTGCTC+TGG - chr5_4:46089802-46089821 Msa0853950:intron 45.0%
ATCTGTCACGAATTATGGGC+CGG - chr5_4:46089829-46089848 Msa0853950:intron 45.0%
ATACCATGACACGAAAGTCG+AGG - chr5_4:46089948-46089967 Msa0853950:intron 45.0%
! GGTGGGATTTAGTTCCACAT+CGG + chr5_4:46089983-46090002 None:intergenic 45.0%
AACTAAATCCCACCGAGTGT+TGG - chr5_4:46089989-46090008 Msa0853950:intron 45.0%
TAATGTTAGCGGCCAACACT+CGG + chr5_4:46090004-46090023 None:intergenic 45.0%
CTGGATGAGAGCAACTCATT+TGG - chr5_4:46090211-46090230 Msa0853950:intron 45.0%
!! AGCAACTCATTTGGTGTGCT+TGG - chr5_4:46090220-46090239 Msa0853950:intron 45.0%
! TTTGGTGTGCTTGGAAGTTC+TGG - chr5_4:46090229-46090248 Msa0853950:intron 45.0%
AGAGGTCTCACTGAACACTA+TGG - chr5_4:46090253-46090272 Msa0853950:intron 45.0%
! CGGAGATTTTCGGTACATAC+TGG + chr5_4:46090283-46090302 None:intergenic 45.0%
GAAAACACAGACATTAGCGG+AGG + chr5_4:46090618-46090637 None:intergenic 45.0%
ATTGCAGCGCTTGCAAGATA+TGG + chr5_4:46090694-46090713 None:intergenic 45.0%
GCCGAACGTGTAAGAATTGT+TGG - chr5_4:46091085-46091104 Msa0853950:five_prime_UTR 45.0%
!!! AAACAAATATTTTAATTTAA+CGG + chr5_4:46083876-46083895 None:intergenic 5.0%
!!! TCAATTTTAATTTTAATTAA+TGG + chr5_4:46085970-46085989 None:intergenic 5.0%
!! TTAATTAAAATTAAAATTGA+TGG - chr5_4:46085970-46085989 Msa0853950:intron 5.0%
!!! TATTTTTAAGTATATATTAT+AGG + chr5_4:46086705-46086724 None:intergenic 5.0%
ATGTGGAACGAGATCTGACG+TGG - chr5_4:46083839-46083858 Msa0853950:three_prime_UTR 50.0%
CGACCCCACTTAGTGTGATA+AGG - chr5_4:46085026-46085045 Msa0853950:CDS 50.0%
!! CTGACAGAGCATTGTGGTGT+CGG - chr5_4:46085163-46085182 Msa0853950:intron 50.0%
AATCGCTGTCCTTCCATGGT+CGG - chr5_4:46086530-46086549 Msa0853950:CDS 50.0%
ATTGAACCACCGACCATGGA+AGG + chr5_4:46086542-46086561 None:intergenic 50.0%
TGCTATTGAACCACCGACCA+TGG + chr5_4:46086546-46086565 None:intergenic 50.0%
CTATAGCCTATGGCGTCTAG+GGG + chr5_4:46086943-46086962 None:intergenic 50.0%
GCTATAGCCTATGGCGTCTA+GGG + chr5_4:46086944-46086963 None:intergenic 50.0%
GGAATAGAAGACGAGCGTAG+TGG + chr5_4:46087256-46087275 None:intergenic 50.0%
TGTAATCACCTCTCCAGCAC+TGG + chr5_4:46087891-46087910 None:intergenic 50.0%
ATGGCTACCATGTCAGAAGG+TGG + chr5_4:46088125-46088144 None:intergenic 50.0%
GCTATGGCTACCATGTCAGA+AGG + chr5_4:46088128-46088147 None:intergenic 50.0%
ACAAGACTGCCGTTGTAGTG+GGG + chr5_4:46088191-46088210 None:intergenic 50.0%
CACAAGACTGCCGTTGTAGT+GGG + chr5_4:46088192-46088211 None:intergenic 50.0%
TTGCGATGATTGAGGGAGAC+TGG - chr5_4:46088427-46088446 Msa0853950:intron 50.0%
CAAGATGTACATCTGGGCAG+AGG + chr5_4:46088960-46088979 None:intergenic 50.0%
GTCCACTGGGGAATACAGAA+TGG - chr5_4:46089359-46089378 Msa0853950:intron 50.0%
TGTTGTCGAAGCTCTCTACC+AGG - chr5_4:46089502-46089521 Msa0853950:intron 50.0%
!! GTGCTTGGAAGTTCTGGAAG+AGG - chr5_4:46090235-46090254 Msa0853950:intron 50.0%
! CACGCCCAAACGGAGATTTT+CGG + chr5_4:46090293-46090312 None:intergenic 50.0%
TGTATGCACACACGCCCAAA+CGG + chr5_4:46090303-46090322 None:intergenic 50.0%
TGCTGCTATGGGACATGCAT+TGG - chr5_4:46090416-46090435 Msa0853950:intron 50.0%
ACAGAAGGAGGATTCTGCAC+CGG - chr5_4:46090441-46090460 Msa0853950:intron 50.0%
TTGCAGCGATTGAGTAGCTC+TGG - chr5_4:46090643-46090662 Msa0853950:intron 50.0%
!! TGAGATGCATTGGCTACTGC+AGG - chr5_4:46090944-46090963 Msa0853950:CDS 50.0%
!! GAGATGCATTGGCTACTGCA+GGG - chr5_4:46090945-46090964 Msa0853950:CDS 50.0%
ATTGGCTACTGCAGGGTTGT+TGG - chr5_4:46090952-46090971 Msa0853950:CDS 50.0%
GCAGGGTTGTTGGAAATACC+AGG - chr5_4:46090962-46090981 Msa0853950:CDS 50.0%
ACATTGACGCGTGTTCGACG+TGG - chr5_4:46084646-46084665 Msa0853950:intron 55.0%
GGAATCTGGACACGCCTAGT+CGG - chr5_4:46084667-46084686 Msa0853950:intron 55.0%
TGGGGTCGGCTACATACATG+GGG + chr5_4:46085014-46085033 None:intergenic 55.0%
GTGGGGTCGGCTACATACAT+GGG + chr5_4:46085015-46085034 None:intergenic 55.0%
AGTGGGGTCGGCTACATACA+TGG + chr5_4:46085016-46085035 None:intergenic 55.0%
GGCTATAGCCTATGGCGTCT+AGG + chr5_4:46086945-46086964 None:intergenic 55.0%
GGTTGAGGGGCTATAGCCTA+TGG + chr5_4:46086953-46086972 None:intergenic 55.0%
GCACTATGAACCACCAGTGC+TGG - chr5_4:46087875-46087894 Msa0853950:intron 55.0%
! ATGAACCACCAGTGCTGGAG+AGG - chr5_4:46087880-46087899 Msa0853950:intron 55.0%
! AATCACCTCTCCAGCACTGG+TGG + chr5_4:46087888-46087907 None:intergenic 55.0%
CTGTCAGTTCAGACCCTACC+TGG - chr5_4:46088164-46088183 Msa0853950:intron 55.0%
! GTTGTAGTGGGGTCCAGGTA+GGG + chr5_4:46088180-46088199 None:intergenic 55.0%
CTACCTGGACCCCACTACAA+CGG - chr5_4:46088179-46088198 Msa0853950:intron 55.0%
GCACAAGACTGCCGTTGTAG+TGG + chr5_4:46088193-46088212 None:intergenic 55.0%
! ACAACGGCAGTCTTGTGCAC+TGG - chr5_4:46088195-46088214 Msa0853950:intron 55.0%
TTGGTTCATGTGGTCCCCGT+GGG - chr5_4:46088859-46088878 Msa0853950:intron 55.0%
! TGTGGTCCCCGTGGGTTTTA+TGG - chr5_4:46088867-46088886 Msa0853950:intron 55.0%
ACAGGGATGAAGGAGTCCAC+TGG - chr5_4:46089345-46089364 Msa0853950:intron 55.0%
CAGGGATGAAGGAGTCCACT+GGG - chr5_4:46089346-46089365 Msa0853950:intron 55.0%
AGGGATGAAGGAGTCCACTG+GGG - chr5_4:46089347-46089366 Msa0853950:intron 55.0%
GGCCATTCTGTATTCCCCAG+TGG + chr5_4:46089364-46089383 None:intergenic 55.0%
TTCTGCATCGTCCACGCTTC+AGG + chr5_4:46089900-46089919 None:intergenic 55.0%
CGATGCAGAAAGCCCAACGA+TGG - chr5_4:46089910-46089929 Msa0853950:intron 55.0%
AGCCTATCGGGTCCATCGTT+GGG + chr5_4:46089925-46089944 None:intergenic 55.0%
AAGCCTATCGGGTCCATCGT+TGG + chr5_4:46089926-46089945 None:intergenic 55.0%
AGGCCTCGACTTTCGTGTCA+TGG + chr5_4:46089954-46089973 None:intergenic 55.0%
CGAGGCCTTACTATCCGATG+TGG - chr5_4:46089966-46089985 Msa0853950:intron 55.0%
! GGACATGCATTGGCCACAGA+AGG - chr5_4:46090426-46090445 Msa0853950:intron 55.0%
! CATGCATTGGCCACAGAAGG+AGG - chr5_4:46090429-46090448 Msa0853950:intron 55.0%
GGTGCAGAATCCTCCTTCTG+TGG + chr5_4:46090442-46090461 None:intergenic 55.0%
GCAGCGCTTGCAAGATATGG+AGG + chr5_4:46090691-46090710 None:intergenic 55.0%
TGACTCGCAATCGTGAAGCC+TGG + chr5_4:46090983-46091002 None:intergenic 55.0%
!! GACAAGTGCCGTTTGCCTGT+AGG - chr5_4:46091216-46091235 Msa0853950:intron 55.0%
CGCGTGTTCGACGTGGAATC+TGG - chr5_4:46084653-46084672 Msa0853950:intron 60.0%
ATCTGGACACGCCTAGTCGG+AGG - chr5_4:46084670-46084689 Msa0853950:intron 60.0%
! ACGCCTAGTCGGAGGAGTGT+TGG - chr5_4:46084678-46084697 Msa0853950:intron 60.0%
CCACCAACACTCCTCCGACT+AGG + chr5_4:46084684-46084703 None:intergenic 60.0%
!! CCTAGTCGGAGGAGTGTTGG+TGG - chr5_4:46084681-46084700 Msa0853950:intron 60.0%
! GATAGTGGCTCACCGCACCA+TGG - chr5_4:46086859-46086878 Msa0853950:intron 60.0%
TATGGCGTCTAGGGGCTGCT+TGG + chr5_4:46086935-46086954 None:intergenic 60.0%
AAGCAGCCCCTAGACGCCAT+AGG - chr5_4:46086934-46086953 Msa0853950:intron 60.0%
GGAGGAGCCCAATGCTGTTC+TGG + chr5_4:46087073-46087092 None:intergenic 60.0%
! CGTTGTAGTGGGGTCCAGGT+AGG + chr5_4:46088181-46088200 None:intergenic 60.0%
! GTTGGTTCATGTGGTCCCCG+TGG - chr5_4:46088858-46088877 Msa0853950:intron 60.0%
!! AGCGTGAGGGGGAGTGTTAC+CGG + chr5_4:46089851-46089870 None:intergenic 60.0%
!! TGAAGCGCTGAAGCGTGAGG+GGG + chr5_4:46089862-46089881 None:intergenic 60.0%
!! CTGAAGCGCTGAAGCGTGAG+GGG + chr5_4:46089863-46089882 None:intergenic 60.0%
!! GCTGAAGCGCTGAAGCGTGA+GGG + chr5_4:46089864-46089883 None:intergenic 60.0%
GTCCACGCTTCAGGCCCATT+GGG + chr5_4:46089891-46089910 None:intergenic 60.0%
AGCCCAACGATGGACCCGAT+AGG - chr5_4:46089920-46089939 Msa0853950:intron 60.0%
GTTAGCGGCCAACACTCGGT+GGG + chr5_4:46090000-46090019 None:intergenic 60.0%
TGTTAGCGGCCAACACTCGG+TGG + chr5_4:46090001-46090020 None:intergenic 60.0%
CGCTGTCCTTCCATGGTCGG+TGG - chr5_4:46086533-46086552 Msa0853950:CDS 65.0%
! CTGCCGTTGTAGTGGGGTCC+AGG + chr5_4:46088185-46088204 None:intergenic 65.0%
!! GGCTGAAGCGCTGAAGCGTG+AGG + chr5_4:46089865-46089884 None:intergenic 65.0%
AGCGCTTCAGCCCAGCCCAA+TGG - chr5_4:46089873-46089892 Msa0853950:intron 65.0%
GCGCTTCAGCCCAGCCCAAT+GGG - chr5_4:46089874-46089893 Msa0853950:intron 65.0%
CGCTTCAGGCCCATTGGGCT+GGG + chr5_4:46089886-46089905 None:intergenic 65.0%
ACGCTTCAGGCCCATTGGGC+TGG + chr5_4:46089887-46089906 None:intergenic 65.0%
AGCCCAATGGGCCTGAAGCG+TGG - chr5_4:46089886-46089905 Msa0853950:intron 65.0%
CGTCCACGCTTCAGGCCCAT+TGG + chr5_4:46089892-46089911 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 46083704 46091552 46083704 ID=Msa0853950;Name=Msa0853950
chr5_4 mRNA 46083704 46091552 46083704 ID=Msa0853950-mRNA-1;Parent=Msa0853950;Name=Msa0853950-mRNA-1;_AED=0.10;_eAED=0.10;_QI=406|0.84|0.92|0.92|0.92|0.85|14|223|501
chr5_4 exon 46083704 46084091 46083704 ID=Msa0853950-mRNA-1:exon:14626;Parent=Msa0853950-mRNA-1
chr5_4 exon 46084163 46084290 46084163 ID=Msa0853950-mRNA-1:exon:14625;Parent=Msa0853950-mRNA-1
chr5_4 exon 46084466 46084607 46084466 ID=Msa0853950-mRNA-1:exon:14624;Parent=Msa0853950-mRNA-1
chr5_4 exon 46084768 46084863 46084768 ID=Msa0853950-mRNA-1:exon:14623;Parent=Msa0853950-mRNA-1
chr5_4 exon 46084974 46085114 46084974 ID=Msa0853950-mRNA-1:exon:14622;Parent=Msa0853950-mRNA-1
chr5_4 exon 46085733 46085907 46085733 ID=Msa0853950-mRNA-1:exon:14621;Parent=Msa0853950-mRNA-1
chr5_4 exon 46086156 46086288 46086156 ID=Msa0853950-mRNA-1:exon:14620;Parent=Msa0853950-mRNA-1
chr5_4 exon 46086359 46086431 46086359 ID=Msa0853950-mRNA-1:exon:14619;Parent=Msa0853950-mRNA-1
chr5_4 exon 46086516 46086609 46086516 ID=Msa0853950-mRNA-1:exon:14618;Parent=Msa0853950-mRNA-1
chr5_4 exon 46087100 46087162 46087100 ID=Msa0853950-mRNA-1:exon:14617;Parent=Msa0853950-mRNA-1
chr5_4 exon 46087355 46087446 46087355 ID=Msa0853950-mRNA-1:exon:14616;Parent=Msa0853950-mRNA-1
chr5_4 exon 46090737 46090831 46090737 ID=Msa0853950-mRNA-1:exon:14615;Parent=Msa0853950-mRNA-1
chr5_4 exon 46090920 46091149 46090920 ID=Msa0853950-mRNA-1:exon:14614;Parent=Msa0853950-mRNA-1
chr5_4 exon 46091268 46091552 46091268 ID=Msa0853950-mRNA-1:exon:14613;Parent=Msa0853950-mRNA-1
chr5_4 five_prime_UTR 46091268 46091552 46091268 ID=Msa0853950-mRNA-1:five_prime_utr;Parent=Msa0853950-mRNA-1
chr5_4 five_prime_UTR 46091029 46091149 46091029 ID=Msa0853950-mRNA-1:five_prime_utr;Parent=Msa0853950-mRNA-1
chr5_4 CDS 46090920 46091028 46090920 ID=Msa0853950-mRNA-1:cds;Parent=Msa0853950-mRNA-1
chr5_4 CDS 46090737 46090831 46090737 ID=Msa0853950-mRNA-1:cds;Parent=Msa0853950-mRNA-1
chr5_4 CDS 46087355 46087446 46087355 ID=Msa0853950-mRNA-1:cds;Parent=Msa0853950-mRNA-1
chr5_4 CDS 46087100 46087162 46087100 ID=Msa0853950-mRNA-1:cds;Parent=Msa0853950-mRNA-1
chr5_4 CDS 46086516 46086609 46086516 ID=Msa0853950-mRNA-1:cds;Parent=Msa0853950-mRNA-1
chr5_4 CDS 46086359 46086431 46086359 ID=Msa0853950-mRNA-1:cds;Parent=Msa0853950-mRNA-1
chr5_4 CDS 46086156 46086288 46086156 ID=Msa0853950-mRNA-1:cds;Parent=Msa0853950-mRNA-1
chr5_4 CDS 46085733 46085907 46085733 ID=Msa0853950-mRNA-1:cds;Parent=Msa0853950-mRNA-1
chr5_4 CDS 46084974 46085114 46084974 ID=Msa0853950-mRNA-1:cds;Parent=Msa0853950-mRNA-1
chr5_4 CDS 46084768 46084863 46084768 ID=Msa0853950-mRNA-1:cds;Parent=Msa0853950-mRNA-1
chr5_4 CDS 46084466 46084607 46084466 ID=Msa0853950-mRNA-1:cds;Parent=Msa0853950-mRNA-1
chr5_4 CDS 46084163 46084290 46084163 ID=Msa0853950-mRNA-1:cds;Parent=Msa0853950-mRNA-1
chr5_4 CDS 46083927 46084091 46083927 ID=Msa0853950-mRNA-1:cds;Parent=Msa0853950-mRNA-1
chr5_4 three_prime_UTR 46083704 46083926 46083704 ID=Msa0853950-mRNA-1:three_prime_utr;Parent=Msa0853950-mRNA-1
Gene Sequence

>Msa0853950

ATGATGGCTTCAGCTGTTGTTAATTTGGTGAACACTACGTTAAATTGGGTTACATATGCTTTAGATGCTCCTTCTGCAAGAGCTATAGTTTTTGGATATAATTTTGGTGGACATTTATTTATTGAAGTTTTTCTCTTGGTGGTCATACTTTTCTTGCTTTCTCAAAAAAGTTACAAGCCTCCTAAAAGACCCTTGACAAACAAGGAAATTGATGAGTTATGTGATGAATGGGTTCCACAACCGCTTATTCCTTCTCTTGATAAAGATATGCACTATGAACCACCAGTGCTGGAGAGGATGAGCCCTAGCATATTGGTAGGTTTTCCACCTTCTGACATGGTAGCCATAGCTATTGCAAGTGCTGCTGGCCCACATACCATAGTTAATGGTAAAGAAGTTATCAATTTTTCCTCAGCAAACTATCTTGGGCTTATAGGTCATCAAAAGTTACTTGACTCATGCACTTCTGCTCTAGAGAAATATGGTGTTGGTTCATGTGGTCCCCGTGGGTTTTATGGAACAATTGATGTACATCTTGACTGTGAAGCAAGAATAGCAAAATTTTTAGGAACGCCTGATTCAATTCTATACTCTTATGGGCTTTCCACCATGTTCAGTGCTATTCCTGCTTTCTCTAAAAAAGGAGATATAATTGTGGCGGATGAAGGAGTCCACTGGGGAATACAGAATGGCCTTTATCTTTCTAGAAGCACTGTCGTGTATTTTAAGCACAATGACATGGATTCTTTAGAAGAAACTTTAGAGAAGCTTACTTCTAAATATAAGCACACCAAGAATTTGAGGCGTTATATTGTTGTCGAAGCTCTCTACCAGAATTCTGGTCAAATAGCACCCTTAGATGATATCATTAAATTGAAGGAAAAATATCGGTTTCGTATTTTACTGGATGAGAGCAACTCATTTGGTGTGCTTGGAAGTTCTGGAAGAGGTCTCACTGAACACTATGGAGTTCCAGTTGAGAAGTTAGATCTTATAACTGCTGCTATGGGACATGCATTGGCCACAGAAGGAGGATTCTGCACCGGAAGTGCAAGAGTTATAGATCACCAGCGATTGAGTAGCTCTGGCTACGTCTTTTCTGCTTCTTTGCCTCCATATCTTGCAAGCGCTGCAATTACAGCTATTGATGTCCTTGACGAAAATCCCAATATATTAACAAAGTTGAAGAACAACATTGCTATGTTATGGAAAGGGTTGTTGGAAATACCAGGCTTCACGATTGCGAGTCATCCAGAGTCACCAATTGTTTATTTGAGATTAAAGAAGTCAACGGGTTCTTGGAATGATGACCTACGCCTGCTTGAAAATATTGCCGAACGTGTTTTGAAAGAAGATTCTGTATTTGTGGTGACTTCTAGAAGATCAACATTAGACAAGTGCCGTTTGCCTGTAGGAATAAGATTGTTTGTTTCTGCAGGGCATTCAGAGTCTGATCTTCACAAGGCATCTGAATCATTGAAAAGGGTTGCTGCATTAGTTTTGTAG

Protein sequence

>Msa0853950

MMASAVVNLVNTTLNWVTYALDAPSARAIVFGYNFGGHLFIEVFLLVVILFLLSQKSYKPPKRPLTNKEIDELCDEWVPQPLIPSLDKDMHYEPPVLERMSPSILVGFPPSDMVAIAIASAAGPHTIVNGKEVINFSSANYLGLIGHQKLLDSCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPAFSKKGDIIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLEETLEKLTSKYKHTKNLRRYIVVEALYQNSGQIAPLDDIIKLKEKYRFRILLDESNSFGVLGSSGRGLTEHYGVPVEKLDLITAAMGHALATEGGFCTGSARVIDHQRLSSSGYVFSASLPPYLASAAITAIDVLDENPNILTKLKNNIAMLWKGLLEIPGFTIASHPESPIVYLRLKKSTGSWNDDLRLLENIAERVLKEDSVFVVTSRRSTLDKCRLPVGIRLFVSAGHSESDLHKASESLKRVAALVL*