Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000610.t1 | XP_003604229.1 | 99.3 | 144 | 1 | 0 | 1 | 144 | 1 | 144 | 8.50E-74 | 286.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000610.t1 | Q9XHS0 | 72.2 | 144 | 39 | 1 | 1 | 144 | 1 | 143 | 7.1e-53 | 208.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000610.t1 | G7JDB2 | 99.3 | 144 | 1 | 0 | 1 | 144 | 1 | 144 | 6.1e-74 | 286.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene70215 | MS.gene000610 | PPI |
| MS.gene53517 | MS.gene000610 | PPI |
| MS.gene28384 | MS.gene000610 | PPI |
| MS.gene000610 | MS.gene025830 | PPI |
| MS.gene03201 | MS.gene000610 | PPI |
| MS.gene000610 | MS.gene09779 | PPI |
| MS.gene02807 | MS.gene000610 | PPI |
| MS.gene57391 | MS.gene000610 | PPI |
| MS.gene000610 | MS.gene034249 | PPI |
| MS.gene09780 | MS.gene000610 | PPI |
| MS.gene013786 | MS.gene000610 | PPI |
| MS.gene46264 | MS.gene000610 | PPI |
| MS.gene030614 | MS.gene000610 | PPI |
| MS.gene09762 | MS.gene000610 | PPI |
| MS.gene000610 | MS.gene073888 | PPI |
| MS.gene000610 | MS.gene053443 | PPI |
| MS.gene02572 | MS.gene000610 | PPI |
| MS.gene015411 | MS.gene000610 | PPI |
| MS.gene65180 | MS.gene000610 | PPI |
| MS.gene09779 | MS.gene000610 | PPI |
| MS.gene000610 | MS.gene053224 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000610.t1 | MTR_4g006830 | 99.306 | 144 | 1 | 0 | 1 | 144 | 1 | 144 | 3.70e-102 | 288 |
| MS.gene000610.t1 | MTR_5g012890 | 96.000 | 125 | 5 | 0 | 20 | 144 | 18 | 142 | 2.04e-85 | 246 |
| MS.gene000610.t1 | MTR_8g093770 | 92.063 | 126 | 10 | 0 | 19 | 144 | 18 | 143 | 2.74e-83 | 241 |
| MS.gene000610.t1 | MTR_5g012890 | 91.111 | 90 | 8 | 0 | 20 | 109 | 18 | 107 | 1.79e-55 | 169 |
| MS.gene000610.t1 | MTR_4g073510 | 75.926 | 54 | 13 | 0 | 1 | 54 | 1 | 54 | 1.24e-20 | 86.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000610.t1 | AT2G32060 | 72.800 | 125 | 33 | 1 | 20 | 144 | 21 | 144 | 1.86e-64 | 193 |
| MS.gene000610.t1 | AT2G32060 | 72.800 | 125 | 33 | 1 | 20 | 144 | 21 | 144 | 1.86e-64 | 193 |
| MS.gene000610.t1 | AT2G32060 | 72.800 | 125 | 33 | 1 | 20 | 144 | 21 | 144 | 1.86e-64 | 193 |
| MS.gene000610.t1 | AT1G15930 | 74.400 | 125 | 31 | 1 | 20 | 144 | 21 | 144 | 2.12e-63 | 191 |
| MS.gene000610.t1 | AT1G15930 | 74.400 | 125 | 31 | 1 | 20 | 144 | 21 | 144 | 2.12e-63 | 191 |
Find 40 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGGCCGTGGTCAGGATTT+TGG | 0.169284 | 4.3:-88596452 | MS.gene000610:intron |
| CCTGTTGCCGCCCCTGCTGC+TGG | 0.273301 | 4.3:-88597236 | MS.gene000610:CDS |
| GCCCCTGCTGCTGGAATTCC+AGG | 0.275871 | 4.3:-88597227 | MS.gene000610:CDS |
| CCAGCAGCAGGGGCGGCAAC+AGG | 0.352403 | 4.3:+88597236 | None:intergenic |
| TCGCCTGGAATTCCAGCAGC+AGG | 0.403859 | 4.3:+88597224 | None:intergenic |
| ATGATATCCATTGGCTCGCC+TGG | 0.406108 | 4.3:+88597209 | None:intergenic |
| TTGACGAGTTTAACATAGTC+AGG | 0.447855 | 4.3:+88597056 | None:intergenic |
| TGCGAAGACACTTGGAGAAT+GGG | 0.448518 | 4.3:-88596988 | MS.gene000610:CDS |
| GTGCGAAGACACTTGGAGAA+TGG | 0.456187 | 4.3:-88596989 | MS.gene000610:CDS |
| AAATCTACAAGGAAAATGTC+AGG | 0.461137 | 4.3:-88598704 | None:intergenic |
| CTGCTCCTGTGTGGTGGTCA+AGG | 0.470678 | 4.3:-88596547 | MS.gene000610:intron |
| GTGCTGCAGAACAACATTGT+AGG | 0.480720 | 4.3:+88596415 | None:intergenic |
| CTGCCTTGCAACTTGTGCTT+AGG | 0.487542 | 4.3:-88597184 | MS.gene000610:CDS |
| GGAAAAGCTAGGAAGGTAAC+TGG | 0.499679 | 4.3:-88596570 | MS.gene000610:CDS |
| CGCCTGGAATTCCAGCAGCA+GGG | 0.501362 | 4.3:+88597225 | None:intergenic |
| CTTGCACGTGGCCTCCATGA+AGG | 0.502412 | 4.3:-88597140 | MS.gene000610:CDS |
| GTTCCTAGTGCGAAGACACT+TGG | 0.512562 | 4.3:-88596996 | MS.gene000610:CDS |
| TCTCCAAGTGTCTTCGCACT+AGG | 0.516396 | 4.3:+88596993 | None:intergenic |
| CTTAGGAAGTCACTGGCATA+TGG | 0.527492 | 4.3:-88597167 | MS.gene000610:CDS |
| TGGAATTCCAGCAGCAGGGG+CGG | 0.535141 | 4.3:+88597229 | None:intergenic |
| GCCTGGAATTCCAGCAGCAG+GGG | 0.541122 | 4.3:+88597226 | None:intergenic |
| CGAGTTTAACATAGTCAGGC+TGG | 0.546098 | 4.3:+88597060 | None:intergenic |
| AGGAAGTCACTGGCATATGG+TGG | 0.559341 | 4.3:-88597164 | MS.gene000610:CDS |
| AACTGGCTGCTCCTGTGTGG+TGG | 0.564611 | 4.3:-88596553 | MS.gene000610:CDS |
| AAGGCAGTCATGATATCCAT+TGG | 0.578468 | 4.3:+88597200 | None:intergenic |
| ACTTGTGCTTAGGAAGTCAC+TGG | 0.586574 | 4.3:-88597174 | MS.gene000610:CDS |
| CTCCGAGGGAAAAGCTAGGA+AGG | 0.586953 | 4.3:-88596577 | MS.gene000610:CDS |
| TGGAATTCCAGGCGAGCCAA+TGG | 0.589710 | 4.3:-88597216 | MS.gene000610:CDS |
| CTTCCTAAGCACAAGTTGCA+AGG | 0.603957 | 4.3:+88597181 | None:intergenic |
| AAGACACTTGGAGAATGGGC+CGG | 0.606076 | 4.3:-88596984 | MS.gene000610:CDS |
| TGACTATGTTAAACTCGTCA+AGG | 0.611176 | 4.3:-88597054 | MS.gene000610:CDS |
| GCATATGGTGGGCTTGCACG+TGG | 0.612030 | 4.3:-88597152 | MS.gene000610:CDS |
| GGAAGTCACTGGCATATGGT+GGG | 0.612935 | 4.3:-88597163 | MS.gene000610:CDS |
| TTGACTCCGAGGGAAAAGCT+AGG | 0.623449 | 4.3:-88596581 | MS.gene000610:CDS |
| AATCTACAAGGAAAATGTCA+GGG | 0.638387 | 4.3:-88598703 | None:intergenic |
| GGTAACTGGCTGCTCCTGTG+TGG | 0.642490 | 4.3:-88596556 | MS.gene000610:CDS |
| AAAGTAATTGAGAAGAACAC+AGG | 0.649204 | 4.3:-88597113 | MS.gene000610:CDS |
| TTGTGTAAGATTGACTCCGA+GGG | 0.654398 | 4.3:-88596591 | MS.gene000610:CDS |
| GTTGTGTAAGATTGACTCCG+AGG | 0.676451 | 4.3:-88596592 | MS.gene000610:CDS |
| TTATACCTTGACCACCACAC+AGG | 0.686928 | 4.3:+88596542 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGATTCTAAAAAAAAATAA+TGG | + | chr4.3:88597262-88597281 | None:intergenic | 10.0% |
| !!! | GTTGAATATGAATTTTAATA+CGG | - | chr4.3:88596426-88596445 | MS.gene000610:CDS | 15.0% |
| !!! | TTGTAATGTGTTTTTATTAT+TGG | + | chr4.3:88598297-88598316 | None:intergenic | 15.0% |
| !!! | TTTGTTGTATTAATTATTGT+TGG | - | chr4.3:88598461-88598480 | MS.gene000610:intron | 15.0% |
| !!! | TTTTGTTTAGTTTATTTGAT+TGG | - | chr4.3:88596512-88596531 | MS.gene000610:intron | 15.0% |
| !! | AACACATTACAAAAAATGAA+TGG | - | chr4.3:88598305-88598324 | MS.gene000610:intron | 20.0% |
| !! | ACACATTACAAAAAATGAAT+GGG | - | chr4.3:88598306-88598325 | MS.gene000610:intron | 20.0% |
| !! | AGTTCAATTCAAATATAGTT+TGG | + | chr4.3:88598255-88598274 | None:intergenic | 20.0% |
| !! | TATTTACTTGTTTATGCATT+GGG | - | chr4.3:88598187-88598206 | MS.gene000610:intron | 20.0% |
| !! | TTATTTACTTGTTTATGCAT+TGG | - | chr4.3:88598186-88598205 | MS.gene000610:intron | 20.0% |
| !!! | AACAATTATGTCATGTTTTA+GGG | + | chr4.3:88597225-88597244 | None:intergenic | 20.0% |
| !!! | AACCATAATATCAAAGTTTT+TGG | + | chr4.3:88597562-88597581 | None:intergenic | 20.0% |
| !!! | AGATATGCTAATTAATTTTG+TGG | + | chr4.3:88598406-88598425 | None:intergenic | 20.0% |
| !!! | CAGAATATTGTTAATTTGAT+TGG | - | chr4.3:88596574-88596593 | MS.gene000610:CDS | 20.0% |
| !!! | GTAAAGAGACATAATTTTAT+TGG | - | chr4.3:88596539-88596558 | MS.gene000610:intron | 20.0% |
| !!! | TATGAATTTTAATACGGATA+TGG | - | chr4.3:88596432-88596451 | MS.gene000610:CDS | 20.0% |
| !!! | TGATATTATGGTTATTTTTG+TGG | - | chr4.3:88597569-88597588 | MS.gene000610:intron | 20.0% |
| !!! | TTGCAATTTTTGATATTTGT+GGG | - | chr4.3:88597168-88597187 | MS.gene000610:CDS | 20.0% |
| !!! | TTTTCTTTTCTTTTTTCGAT+TGG | - | chr4.3:88598588-88598607 | MS.gene000610:intron | 20.0% |
| ! | AAAAATAAGCTAATCCATAC+GGG | - | chr4.3:88596998-88597017 | MS.gene000610:CDS | 25.0% |
| ! | AATTAACAATATTCTGCAGT+AGG | + | chr4.3:88596570-88596589 | None:intergenic | 25.0% |
| ! | ACCAAAAAAAAAACGACATA+AGG | + | chr4.3:88597042-88597061 | None:intergenic | 25.0% |
| ! | ATCATTTGTGAAACTGTTTA+TGG | - | chr4.3:88596650-88596669 | MS.gene000610:intron | 25.0% |
| ! | CAAAAATAAGCTAATCCATA+CGG | - | chr4.3:88596997-88597016 | MS.gene000610:CDS | 25.0% |
| ! | CAAATTACACAAACAAAAGA+AGG | + | chr4.3:88597693-88597712 | None:intergenic | 25.0% |
| ! | CAAGCAAAATTAAAGAATGA+TGG | - | chr4.3:88598344-88598363 | MS.gene000610:intron | 25.0% |
| ! | CACCAAAAACTTTGATATTA+TGG | - | chr4.3:88597557-88597576 | MS.gene000610:intron | 25.0% |
| ! | CCAAAAAAAAAACGACATAA+GGG | + | chr4.3:88597041-88597060 | None:intergenic | 25.0% |
| ! | CGCAAATCACAATATAAAAA+TGG | + | chr4.3:88597471-88597490 | None:intergenic | 25.0% |
| ! | GACAATGTATAATATATGCA+AGG | + | chr4.3:88597089-88597108 | None:intergenic | 25.0% |
| ! | TCATTTGTGAAACTGTTTAT+GGG | - | chr4.3:88596651-88596670 | MS.gene000610:intron | 25.0% |
| ! | TCTAAGTAACAATTCATCTA+TGG | - | chr4.3:88597774-88597793 | MS.gene000610:intron | 25.0% |
| !! | CAACAATTATGTCATGTTTT+AGG | + | chr4.3:88597226-88597245 | None:intergenic | 25.0% |
| !! | GTTGCAATTTTTGATATTTG+TGG | - | chr4.3:88597167-88597186 | MS.gene000610:CDS | 25.0% |
| !! | TAATTAATTTTGTGGTGTAG+TGG | + | chr4.3:88598398-88598417 | None:intergenic | 25.0% |
| !! | TAATTTGATTGGAGTATTAG+AGG | - | chr4.3:88596585-88596604 | MS.gene000610:CDS | 25.0% |
| !! | TTAACGGATATCACATTTAT+TGG | - | chr4.3:88598145-88598164 | MS.gene000610:intron | 25.0% |
| !! | TTTTGATATTTGTGGGTATA+CGG | - | chr4.3:88597175-88597194 | MS.gene000610:CDS | 25.0% |
| !!! | ACAATTATGTCATGTTTTAG+GGG | + | chr4.3:88597224-88597243 | None:intergenic | 25.0% |
| !!! | GTAAGTCTTCTGAAATTTAA+CGG | - | chr4.3:88598129-88598148 | MS.gene000610:intron | 25.0% |
| !!! | TTATGTCGTTTTTTTTTTGG+TGG | - | chr4.3:88597041-88597060 | MS.gene000610:CDS | 25.0% |
| AAAGTAATTGAGAAGAACAC+AGG | - | chr4.3:88597976-88597995 | MS.gene000610:intron | 30.0% | |
| AAATTTCAGAAGACTTACAC+CGG | + | chr4.3:88598127-88598146 | None:intergenic | 30.0% | |
| ATTACAAAAAATGAATGGGC+AGG | - | chr4.3:88598310-88598329 | MS.gene000610:intron | 30.0% | |
| CAAATAAGTCCAATTCAAAC+AGG | + | chr4.3:88596611-88596630 | None:intergenic | 30.0% | |
| CATGACAATGATTCTCTATA+AGG | - | chr4.3:88597647-88597666 | MS.gene000610:intron | 30.0% | |
| CTAAGTAGCAATTCTTACAT+GGG | - | chr4.3:88597389-88597408 | MS.gene000610:intron | 30.0% | |
| TATAATATATGCAAGGTCCA+GGG | + | chr4.3:88597082-88597101 | None:intergenic | 30.0% | |
| TCTAAGTAGCAATTCTTACA+TGG | - | chr4.3:88597388-88597407 | MS.gene000610:intron | 30.0% | |
| TTTGATATTTGTGGGTATAC+GGG | - | chr4.3:88597176-88597195 | MS.gene000610:CDS | 30.0% | |
| ! | GTTTTCACTAACAAATAGTC+TGG | + | chr4.3:88596924-88596943 | None:intergenic | 30.0% |
| ! | TAAGAATTGCTACTTAGACA+CGG | + | chr4.3:88597386-88597405 | None:intergenic | 30.0% |
| !! | TCTTGTGTGGTTTGTTTATT+TGG | - | chr4.3:88597314-88597333 | MS.gene000610:intron | 30.0% |
| !! | TTTTCATAAACTAGCTTGAC+AGG | + | chr4.3:88596852-88596871 | None:intergenic | 30.0% |
| !!! | ATGGTTATTTTTGTGGTTGT+GGG | - | chr4.3:88597576-88597595 | MS.gene000610:intron | 30.0% |
| !!! | CCCTTATGTCGTTTTTTTTT+TGG | - | chr4.3:88597038-88597057 | MS.gene000610:CDS | 30.0% |
| !!! | TATGGTTATTTTTGTGGTTG+TGG | - | chr4.3:88597575-88597594 | MS.gene000610:intron | 30.0% |
| ACCTGCTAAATAAGCTGTTT+AGG | - | chr4.3:88596760-88596779 | MS.gene000610:intron | 35.0% | |
| AGAAAATGTGGATAAATGGG+GGG | - | chr4.3:88597506-88597525 | MS.gene000610:intron | 35.0% | |
| ATAAGGGCTCTGTTTGAATA+AGG | + | chr4.3:88597025-88597044 | None:intergenic | 35.0% | |
| ATACAGAACAACACAAGACA+CGG | + | chr4.3:88597724-88597743 | None:intergenic | 35.0% | |
| CACATTCAACAGTTAAAACC+AGG | + | chr4.3:88598621-88598640 | None:intergenic | 35.0% | |
| CAGAAAATGTGGATAAATGG+GGG | - | chr4.3:88597505-88597524 | MS.gene000610:intron | 35.0% | |
| CCAGAAAATGTGGATAAATG+GGG | - | chr4.3:88597504-88597523 | MS.gene000610:intron | 35.0% | |
| CCTGCTAAATAAGCTGTTTA+GGG | - | chr4.3:88596761-88596780 | MS.gene000610:intron | 35.0% | |
| GCCAGAAAATGTGGATAAAT+GGG | - | chr4.3:88597503-88597522 | MS.gene000610:intron | 35.0% | |
| GTATAATATATGCAAGGTCC+AGG | + | chr4.3:88597083-88597102 | None:intergenic | 35.0% | |
| TAAGGGCTCTGTTTGAATAA+GGG | + | chr4.3:88597024-88597043 | None:intergenic | 35.0% | |
| TATGCATTGGGATACTTATC+AGG | - | chr4.3:88598199-88598218 | MS.gene000610:intron | 35.0% | |
| TATTAGAGGCCTGTTTGAAT+TGG | - | chr4.3:88596599-88596618 | MS.gene000610:intron | 35.0% | |
| TGACTATGTTAAACTCGTCA+AGG | - | chr4.3:88598035-88598054 | MS.gene000610:intron | 35.0% | |
| TTGACGAGTTTAACATAGTC+AGG | + | chr4.3:88598036-88598055 | None:intergenic | 35.0% | |
| TTGTCATGCAATGACGAAAT+AGG | + | chr4.3:88597635-88597654 | None:intergenic | 35.0% | |
| ! | CTTGTGTTGTTCTGTATGTT+TGG | - | chr4.3:88597727-88597746 | MS.gene000610:intron | 35.0% |
| ! | TTAATTTTGTGGTGTAGTGG+TGG | + | chr4.3:88598395-88598414 | None:intergenic | 35.0% |
| ! | TTCTCTGTTCAGGACATTTT+TGG | - | chr4.3:88597413-88597432 | MS.gene000610:intron | 35.0% |
| !! | CAATTACTTTTGCACCTTCA+TGG | + | chr4.3:88597966-88597985 | None:intergenic | 35.0% |
| !! | GATATTTTTGCTATGCAGTG+AGG | - | chr4.3:88597810-88597829 | MS.gene000610:intron | 35.0% |
| !!! | CTGGTTTTAACTGTTGAATG+TGG | - | chr4.3:88598619-88598638 | MS.gene000610:intron | 35.0% |
| !!! | TGGTTATTTTTGTGGTTGTG+GGG | - | chr4.3:88597577-88597596 | MS.gene000610:intron | 35.0% |
| !!! | TGTCGTTTTTTTTTTGGTGG+TGG | - | chr4.3:88597044-88597063 | MS.gene000610:CDS | 35.0% |
| AAGGCAGTCATGATATCCAT+TGG | + | chr4.3:88597892-88597911 | None:intergenic | 40.0% | |
| CCCTAAACAGCTTATTTAGC+AGG | + | chr4.3:88596764-88596783 | None:intergenic | 40.0% | |
| CGCCAGAAAATGTGGATAAA+TGG | - | chr4.3:88597502-88597521 | MS.gene000610:intron | 40.0% | |
| CTTGATATCGCCAGAAAATG+TGG | - | chr4.3:88597494-88597513 | MS.gene000610:intron | 40.0% | |
| GTCAATCTTACACAACTGCA+AGG | + | chr4.3:88598493-88598512 | None:intergenic | 40.0% | |
| GTTGTTCTGTATGTTTGGTC+TGG | - | chr4.3:88597732-88597751 | MS.gene000610:intron | 40.0% | |
| TCTTATCTGTGCATCTTGTG+TGG | - | chr4.3:88597301-88597320 | MS.gene000610:intron | 40.0% | |
| TTACATGGGTTTCTCTGTTC+AGG | - | chr4.3:88597403-88597422 | MS.gene000610:intron | 40.0% | |
| ! | CCCCATTTATCCACATTTTC+TGG | + | chr4.3:88597507-88597526 | None:intergenic | 40.0% |
| ! | TAAGCTGTTTAGGGCTTGTT+TGG | - | chr4.3:88596770-88596789 | MS.gene000610:intron | 40.0% |
| ! | TTGTGTAAGATTGACTCCGA+GGG | - | chr4.3:88598498-88598517 | MS.gene000610:intron | 40.0% |
| !! | GCTTGTGTAGTTTGTTTGTC+TGG | - | chr4.3:88597342-88597361 | MS.gene000610:intron | 40.0% |
| !! | TTACTTTTGCACCTTCATGG+AGG | + | chr4.3:88597963-88597982 | None:intergenic | 40.0% |
| !! | TTTTCGATTGGTGTTTTGCC+TGG | - | chr4.3:88598600-88598619 | MS.gene000610:intron | 40.0% |
| !!! | TTTTTTTTTGGTGGTGGCCA+GGG | - | chr4.3:88597050-88597069 | MS.gene000610:CDS | 40.0% |
| !!! | TTTTTTTTTTGGTGGTGGCC+AGG | - | chr4.3:88597049-88597068 | MS.gene000610:CDS | 40.0% |
| ACTTGTGCTTAGGAAGTCAC+TGG | - | chr4.3:88597915-88597934 | MS.gene000610:intron | 45.0% | |
| CGAGTTTAACATAGTCAGGC+TGG | + | chr4.3:88598032-88598051 | None:intergenic | 45.0% | |
| CTTACACAACTGCAAGGAGA+AGG | + | chr4.3:88598487-88598506 | None:intergenic | 45.0% | |
| CTTAGGAAGTCACTGGCATA+TGG | - | chr4.3:88597922-88597941 | MS.gene000610:intron | 45.0% | |
| CTTCCTAAGCACAAGTTGCA+AGG | + | chr4.3:88597911-88597930 | None:intergenic | 45.0% | |
| GGAAAAGCTAGGAAGGTAAC+TGG | - | chr4.3:88598519-88598538 | MS.gene000610:intron | 45.0% | |
| GTGCTGCAGAACAACATTGT+AGG | + | chr4.3:88598677-88598696 | None:intergenic | 45.0% | |
| TGCGAAGACACTTGGAGAAT+GGG | - | chr4.3:88598101-88598120 | MS.gene000610:intron | 45.0% | |
| TGTTTGAATAAGGGCCCGTA+TGG | + | chr4.3:88597015-88597034 | None:intergenic | 45.0% | |
| TTAACTGTTGAATGTGGCCG+TGG | - | chr4.3:88598625-88598644 | MS.gene000610:intron | 45.0% | |
| TTATACCTTGACCACCACAC+AGG | + | chr4.3:88598550-88598569 | None:intergenic | 45.0% | |
| ! | GTTGTGTAAGATTGACTCCG+AGG | - | chr4.3:88598497-88598516 | MS.gene000610:intron | 45.0% |
| !! | TACCTTCCTAGCTTTTCCCT+CGG | + | chr4.3:88598517-88598536 | None:intergenic | 45.0% |
| AAGACACTTGGAGAATGGGC+CGG | - | chr4.3:88598105-88598124 | MS.gene000610:intron | 50.0% | |
| AGGAAGTCACTGGCATATGG+TGG | - | chr4.3:88597925-88597944 | MS.gene000610:intron | 50.0% | |
| CGGGATTCATTCTGCAGTTG+TGG | - | chr4.3:88597195-88597214 | MS.gene000610:CDS | 50.0% | |
| CTGCCTTGCAACTTGTGCTT+AGG | - | chr4.3:88597905-88597924 | MS.gene000610:intron | 50.0% | |
| GATGCAGCTGTTGCATGTTG+TGG | - | chr4.3:88597531-88597550 | MS.gene000610:intron | 50.0% | |
| GGAAGTCACTGGCATATGGT+GGG | - | chr4.3:88597926-88597945 | MS.gene000610:intron | 50.0% | |
| GGTGTAGTGGTGGTTCTTGT+TGG | + | chr4.3:88598385-88598404 | None:intergenic | 50.0% | |
| GTGCGAAGACACTTGGAGAA+TGG | - | chr4.3:88598100-88598119 | MS.gene000610:intron | 50.0% | |
| GTTCCTAGTGCGAAGACACT+TGG | - | chr4.3:88598093-88598112 | MS.gene000610:intron | 50.0% | |
| TCTCCAAGTGTCTTCGCACT+AGG | + | chr4.3:88598099-88598118 | None:intergenic | 50.0% | |
| TTGACTCCGAGGGAAAAGCT+AGG | - | chr4.3:88598508-88598527 | MS.gene000610:intron | 50.0% | |
| !! | ATGATATCCATTGGCTCGCC+TGG | + | chr4.3:88597883-88597902 | None:intergenic | 50.0% |
| AAGGTCCAGGGTTTGAACCC+TGG | + | chr4.3:88597070-88597089 | None:intergenic | 55.0% | |
| CCAACTGAGCTAAGCTCACG+AGG | - | chr4.3:88597113-88597132 | MS.gene000610:CDS | 55.0% | |
| CCTCCCCAAAATCCTGACCA+CGG | + | chr4.3:88598645-88598664 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | + | chr4.3:88597116-88597135 | None:intergenic | 55.0% | |
| CTCCGAGGGAAAAGCTAGGA+AGG | - | chr4.3:88598512-88598531 | MS.gene000610:intron | 55.0% | |
| TGGAATTCCAGGCGAGCCAA+TGG | - | chr4.3:88597873-88597892 | MS.gene000610:intron | 55.0% | |
| TGTTGAATGTGGCCGTGGTC+AGG | - | chr4.3:88598630-88598649 | MS.gene000610:intron | 55.0% | |
| ! | GTGGCCGTGGTCAGGATTTT+GGG | - | chr4.3:88598638-88598657 | MS.gene000610:intron | 55.0% |
| ! | TGGCCGTGGTCAGGATTTTG+GGG | - | chr4.3:88598639-88598658 | MS.gene000610:intron | 55.0% |
| ! | TGTGGCCGTGGTCAGGATTT+TGG | - | chr4.3:88598637-88598656 | MS.gene000610:intron | 55.0% |
| AACTGGCTGCTCCTGTGTGG+TGG | - | chr4.3:88598536-88598555 | MS.gene000610:intron | 60.0% | |
| CGCCTGGAATTCCAGCAGCA+GGG | + | chr4.3:88597867-88597886 | None:intergenic | 60.0% | |
| CTGCTCCTGTGTGGTGGTCA+AGG | - | chr4.3:88598542-88598561 | MS.gene000610:intron | 60.0% | |
| CTTGCACGTGGCCTCCATGA+AGG | - | chr4.3:88597949-88597968 | MS.gene000610:intron | 60.0% | |
| GCCTGGAATTCCAGCAGCAG+GGG | + | chr4.3:88597866-88597885 | None:intergenic | 60.0% | |
| GGTAACTGGCTGCTCCTGTG+TGG | - | chr4.3:88598533-88598552 | MS.gene000610:intron | 60.0% | |
| TCGCCTGGAATTCCAGCAGC+AGG | + | chr4.3:88597868-88597887 | None:intergenic | 60.0% | |
| TGGAATTCCAGCAGCAGGGG+CGG | + | chr4.3:88597863-88597882 | None:intergenic | 60.0% | |
| !! | CCGTGGTCAGGATTTTGGGG+AGG | - | chr4.3:88598642-88598661 | MS.gene000610:intron | 60.0% |
| !! | GCATATGGTGGGCTTGCACG+TGG | - | chr4.3:88597937-88597956 | MS.gene000610:intron | 60.0% |
| GCCCCTGCTGCTGGAATTCC+AGG | - | chr4.3:88597862-88597881 | MS.gene000610:intron | 65.0% | |
| GGTGGCCAGGGTTCAAACCC+TGG | - | chr4.3:88597062-88597081 | MS.gene000610:CDS | 65.0% | |
| CCAGCAGCAGGGGCGGCAAC+AGG | + | chr4.3:88597856-88597875 | None:intergenic | 75.0% | |
| CCTGTTGCCGCCCCTGCTGC+TGG | - | chr4.3:88597853-88597872 | MS.gene000610:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 88596400 | 88598711 | 88596400 | ID=MS.gene000610 |
| chr4.3 | mRNA | 88596400 | 88598711 | 88596400 | ID=MS.gene000610.t1;Parent=MS.gene000610 |
| chr4.3 | exon | 88598704 | 88598711 | 88598704 | ID=MS.gene000610.t1.exon1;Parent=MS.gene000610.t1 |
| chr4.3 | CDS | 88598704 | 88598711 | 88598704 | ID=cds.MS.gene000610.t1;Parent=MS.gene000610.t1 |
| chr4.3 | exon | 88596983 | 88597283 | 88596983 | ID=MS.gene000610.t1.exon2;Parent=MS.gene000610.t1 |
| chr4.3 | CDS | 88596983 | 88597283 | 88596983 | ID=cds.MS.gene000610.t1;Parent=MS.gene000610.t1 |
| chr4.3 | exon | 88596548 | 88596613 | 88596548 | ID=MS.gene000610.t1.exon3;Parent=MS.gene000610.t1 |
| chr4.3 | CDS | 88596548 | 88596613 | 88596548 | ID=cds.MS.gene000610.t1;Parent=MS.gene000610.t1 |
| chr4.3 | exon | 88596400 | 88596459 | 88596400 | ID=MS.gene000610.t1.exon4;Parent=MS.gene000610.t1 |
| chr4.3 | CDS | 88596400 | 88596459 | 88596400 | ID=cds.MS.gene000610.t1;Parent=MS.gene000610.t1 |
| Gene Sequence |
| Protein sequence |
