Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025830.t1 | XP_003611335.1 | 99.3 | 134 | 1 | 0 | 28 | 161 | 5 | 138 | 2.70E-68 | 268.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025830.t1 | Q9XHS0 | 75.4 | 138 | 31 | 2 | 27 | 161 | 2 | 139 | 2.0e-51 | 203.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025830.t1 | G7JXD6 | 99.3 | 134 | 1 | 0 | 28 | 161 | 5 | 138 | 1.9e-68 | 268.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene053224 | MS.gene025830 | PPI |
| MS.gene02572 | MS.gene025830 | PPI |
| MS.gene46264 | MS.gene025830 | PPI |
| MS.gene025830 | MS.gene053443 | PPI |
| MS.gene015411 | MS.gene025830 | PPI |
| MS.gene000610 | MS.gene025830 | PPI |
| MS.gene65180 | MS.gene025830 | PPI |
| MS.gene09779 | MS.gene025830 | PPI |
| MS.gene70215 | MS.gene025830 | PPI |
| MS.gene53517 | MS.gene025830 | PPI |
| MS.gene025830 | MS.gene073888 | PPI |
| MS.gene03201 | MS.gene025830 | PPI |
| MS.gene034249 | MS.gene025830 | PPI |
| MS.gene28384 | MS.gene025830 | PPI |
| MS.gene02807 | MS.gene025830 | PPI |
| MS.gene57391 | MS.gene025830 | PPI |
| MS.gene09780 | MS.gene025830 | PPI |
| MS.gene013786 | MS.gene025830 | PPI |
| MS.gene030614 | MS.gene025830 | PPI |
| MS.gene09762 | MS.gene025830 | PPI |
| MS.gene025830 | MS.gene034249 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025830.t1 | MTR_5g012890 | 99.254 | 134 | 1 | 0 | 28 | 161 | 5 | 138 | 1.92e-94 | 270 |
| MS.gene025830.t1 | MTR_8g093770 | 95.082 | 122 | 6 | 0 | 40 | 161 | 18 | 139 | 2.78e-83 | 241 |
| MS.gene025830.t1 | MTR_4g006830 | 95.082 | 122 | 6 | 0 | 40 | 161 | 19 | 140 | 9.29e-83 | 240 |
| MS.gene025830.t1 | MTR_5g012890 | 96.117 | 103 | 4 | 0 | 28 | 130 | 5 | 107 | 4.08e-67 | 199 |
| MS.gene025830.t1 | MTR_4g073510 | 70.833 | 48 | 12 | 1 | 30 | 75 | 7 | 54 | 1.53e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025830.t1 | AT2G32060 | 76.033 | 121 | 28 | 1 | 41 | 161 | 21 | 140 | 5.73e-65 | 195 |
| MS.gene025830.t1 | AT2G32060 | 76.033 | 121 | 28 | 1 | 41 | 161 | 21 | 140 | 5.73e-65 | 195 |
| MS.gene025830.t1 | AT2G32060 | 76.033 | 121 | 28 | 1 | 41 | 161 | 21 | 140 | 5.73e-65 | 195 |
| MS.gene025830.t1 | AT1G15930 | 76.860 | 121 | 27 | 1 | 41 | 161 | 21 | 140 | 4.19e-63 | 191 |
| MS.gene025830.t1 | AT1G15930 | 76.860 | 121 | 27 | 1 | 41 | 161 | 21 | 140 | 4.19e-63 | 191 |
Find 42 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACCAATTTGACATAATC+AGG | 0.268051 | 5.3:-6001694 | None:intergenic |
| GTTGTTGCTGCTGCAATTCC+AGG | 0.269519 | 5.3:+6001523 | MS.gene025830:CDS |
| GATGCTCTTGTGTGGTTGTC+AGG | 0.354575 | 5.3:+6002013 | MS.gene025830:CDS |
| ACCAGCTGGATGCGATTTGC+AGG | 0.362694 | 5.3:-6000527 | None:intergenic |
| ATGCTGCAAAACAACATTGT+AGG | 0.363171 | 5.3:-6002149 | None:intergenic |
| CATAAGCACGAGACTTTCTA+AGG | 0.363450 | 5.3:-6001582 | None:intergenic |
| CCAACCTGATTATGTCAAAT+TGG | 0.373462 | 5.3:+6001690 | MS.gene025830:CDS |
| CTTAGAAAGTCTCGTGCTTA+TGG | 0.383982 | 5.3:+6001583 | MS.gene025830:CDS |
| ATCAGGTTGGTCACAATCTT+CGG | 0.412966 | 5.3:-6001677 | None:intergenic |
| ATGATGTCCATTGGCTCGCC+TGG | 0.437864 | 5.3:-6001541 | None:intergenic |
| TTGCAGGAAGGCGGAGATAG+AGG | 0.453615 | 5.3:-6000511 | None:intergenic |
| TCTCCAAGGGTCTTTGCACT+TGG | 0.459795 | 5.3:-6001757 | None:intergenic |
| GGAATTGCAGCAGCAACAAC+AGG | 0.463311 | 5.3:-6001520 | None:intergenic |
| GGTAAAGCTAGGAAGGTTAC+CGG | 0.476827 | 5.3:+6001991 | MS.gene025830:CDS |
| AACATTGTGCTCTGCGCAGA+GGG | 0.503587 | 5.3:-6001719 | None:intergenic |
| CTGAAGCAACTCTATGCAAT+GGG | 0.504406 | 5.3:+5999699 | None:intergenic |
| CAGAGAGGGTTTCAATTCGA+TGG | 0.508374 | 5.3:-6000486 | None:intergenic |
| GACAACCACACAAGAGCATC+CGG | 0.522597 | 5.3:-6002010 | None:intergenic |
| TCCTGCAAATCGCATCCAGC+TGG | 0.522745 | 5.3:+6000526 | MS.gene025830:CDS |
| TTACGCCAGCCCACTCTCCA+AGG | 0.529322 | 5.3:-6001771 | None:intergenic |
| CCAATTTGACATAATCAGGT+TGG | 0.530247 | 5.3:-6001690 | None:intergenic |
| TGCAAAGACCCTTGGAGAGT+GGG | 0.530356 | 5.3:+6001762 | MS.gene025830:CDS |
| GTTCCAAGTGCAAAGACCCT+TGG | 0.537039 | 5.3:+6001754 | MS.gene025830:CDS |
| AAGACCCTTGGAGAGTGGGC+TGG | 0.538691 | 5.3:+6001766 | MS.gene025830:CDS |
| TTGATTCAGAAGGTAAAGCT+AGG | 0.543764 | 5.3:+6001980 | MS.gene025830:CDS |
| TTCAGAAGGTAAAGCTAGGA+AGG | 0.557714 | 5.3:+6001984 | MS.gene025830:CDS |
| GCTGGATGCGATTTGCAGGA+AGG | 0.568086 | 5.3:-6000523 | None:intergenic |
| TGCAATTCCAGGCGAGCCAA+TGG | 0.568250 | 5.3:+6001534 | MS.gene025830:CDS |
| GTGCAAAGACCCTTGGAGAG+TGG | 0.569975 | 5.3:+6001761 | MS.gene025830:CDS |
| GCTGAAGCAACTCTATGCAA+TGG | 0.578230 | 5.3:+5999698 | None:intergenic |
| ATGCTCTTGTGTGGTTGTCA+GGG | 0.586706 | 5.3:+6002014 | MS.gene025830:CDS |
| AAAGCAGTCATGATGTCCAT+TGG | 0.589394 | 5.3:-6001550 | None:intergenic |
| CGGAGATAGAGGCACAGAGA+GGG | 0.597269 | 5.3:-6000500 | None:intergenic |
| CTTGCACGAGGTCTTCATGA+AGG | 0.605005 | 5.3:+6001610 | MS.gene025830:CDS |
| AGAAAGTCTCGTGCTTATGG+TGG | 0.620799 | 5.3:+6001586 | MS.gene025830:CDS |
| TTGTGCAAGATTGATTCAGA+AGG | 0.623879 | 5.3:+6001970 | MS.gene025830:CDS |
| TACGCCAGCCCACTCTCCAA+GGG | 0.624257 | 5.3:-6001770 | None:intergenic |
| GCTTATGGTGGTCTTGCACG+AGG | 0.624672 | 5.3:+6001598 | MS.gene025830:CDS |
| TAACATTGTGCTCTGCGCAG+AGG | 0.632440 | 5.3:-6001720 | None:intergenic |
| GGTTACCGGATGCTCTTGTG+TGG | 0.638821 | 5.3:+6002005 | MS.gene025830:CDS |
| GCGGAGATAGAGGCACAGAG+AGG | 0.671978 | 5.3:-6000501 | None:intergenic |
| GGATGCGATTTGCAGGAAGG+CGG | 0.685140 | 5.3:-6000520 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATATATTTTTTTTATA+TGG | - | chr5.3:5999873-5999892 | None:intergenic | 0.0% |
| !!! | TAGTTAATTTTTTATTTTGT+AGG | - | chr5.3:6000410-6000429 | None:intergenic | 10.0% |
| !! | AAAAAAACGTTAGTATTAAT+TGG | + | chr5.3:6000444-6000463 | MS.gene025830:intron | 15.0% |
| !! | AAAACAATAGAATAATTTGA+CGG | + | chr5.3:5999996-6000015 | MS.gene025830:intron | 15.0% |
| !! | AAAAGTTCACAATATAAATT+TGG | - | chr5.3:6001860-6001879 | None:intergenic | 15.0% |
| !! | AAAGTTCACAATATAAATTT+GGG | - | chr5.3:6001859-6001878 | None:intergenic | 15.0% |
| !!! | AAATGGTTTTGATAATATTT+TGG | - | chr5.3:6000327-6000346 | None:intergenic | 15.0% |
| !!! | ATATAAATTTTTAAGTTCGA+GGG | + | chr5.3:5999933-5999952 | MS.gene025830:intron | 15.0% |
| !!! | ATTCTTCTATTTATATGTTT+TGG | + | chr5.3:6001384-6001403 | MS.gene025830:intron | 15.0% |
| !!! | ATTTTCTAAAACCAATTTTA+CGG | - | chr5.3:6000365-6000384 | None:intergenic | 15.0% |
| !!! | TATATAAATTTTTAAGTTCG+AGG | + | chr5.3:5999932-5999951 | MS.gene025830:intron | 15.0% |
| !!! | TGAAGTTTAGTTAATTTTAA+GGG | + | chr5.3:6000062-6000081 | MS.gene025830:intron | 15.0% |
| !!! | TTGAAGTTTAGTTAATTTTA+AGG | + | chr5.3:6000061-6000080 | MS.gene025830:intron | 15.0% |
| !!! | TTGTTTTAAATTTACATTGA+AGG | - | chr5.3:5999762-5999781 | None:intergenic | 15.0% |
| !!! | TTGTTTTCTAACAAATAAAA+AGG | - | chr5.3:6000134-6000153 | None:intergenic | 15.0% |
| !!! | TTTTATTTGTTAGAAAACAA+CGG | + | chr5.3:6000134-6000153 | MS.gene025830:intron | 15.0% |
| !! | AAAATAAGATAAATCCAACT+AGG | + | chr5.3:6001160-6001179 | MS.gene025830:intron | 20.0% |
| !! | ACAATATAAATTTGGGAATT+GGG | - | chr5.3:6001852-6001871 | None:intergenic | 20.0% |
| !! | ATTACTTGTAGTTATTACTA+AGG | - | chr5.3:6001272-6001291 | None:intergenic | 20.0% |
| !! | CATTGAAGGATTTATATTAA+AGG | - | chr5.3:5999748-5999767 | None:intergenic | 20.0% |
| !! | CTATTAACTATCGTAAAATT+AGG | + | chr5.3:5999816-5999835 | MS.gene025830:intron | 20.0% |
| !! | TAGTATTAATTGGAAAAGTA+GGG | + | chr5.3:6000454-6000473 | MS.gene025830:intron | 20.0% |
| !! | TTAGTATTAATTGGAAAAGT+AGG | + | chr5.3:6000453-6000472 | MS.gene025830:intron | 20.0% |
| !! | TTCAAATGCAATTGTAATTT+AGG | + | chr5.3:6000715-6000734 | MS.gene025830:intron | 20.0% |
| !!! | TAAAGATTTTTAAACTTGCA+AGG | - | chr5.3:6001437-6001456 | None:intergenic | 20.0% |
| !!! | TATAAATTTTTAAGTTCGAG+GGG | + | chr5.3:5999934-5999953 | MS.gene025830:intron | 20.0% |
| !!! | TTATTTTGTAGGAAAGTAAA+TGG | - | chr5.3:6000399-6000418 | None:intergenic | 20.0% |
| ! | AAAACTAGGTTAAGAATCAA+GGG | - | chr5.3:6001800-6001819 | None:intergenic | 25.0% |
| ! | AACTTATGAAAACAGCTTAT+GGG | - | chr5.3:6000833-6000852 | None:intergenic | 25.0% |
| ! | AATTCCTGCATAAAACAAAA+TGG | - | chr5.3:6000611-6000630 | None:intergenic | 25.0% |
| ! | ATCCTGCAAACAAAAAAAAA+AGG | - | chr5.3:6002110-6002129 | None:intergenic | 25.0% |
| ! | ATCTTAAACGATAAAACTAC+GGG | - | chr5.3:6001186-6001205 | None:intergenic | 25.0% |
| ! | ATTAAAGTTGTGCAATTTCA+GGG | + | chr5.3:6000032-6000051 | MS.gene025830:intron | 25.0% |
| ! | ATTGACGAAACATACAATTT+CGG | + | chr5.3:6000089-6000108 | MS.gene025830:intron | 25.0% |
| ! | CACAATATAAATTTGGGAAT+TGG | - | chr5.3:6001853-6001872 | None:intergenic | 25.0% |
| ! | GATCTTAAACGATAAAACTA+CGG | - | chr5.3:6001187-6001206 | None:intergenic | 25.0% |
| ! | TAAAACTAGGTTAAGAATCA+AGG | - | chr5.3:6001801-6001820 | None:intergenic | 25.0% |
| ! | TCCTGCAAACAAAAAAAAAA+GGG | - | chr5.3:6002109-6002128 | None:intergenic | 25.0% |
| ! | TTAGCATGAAAAAAGACAAT+AGG | - | chr5.3:6002068-6002087 | None:intergenic | 25.0% |
| !! | AATGTATAGAACTTTTTACC+AGG | - | chr5.3:6001367-6001386 | None:intergenic | 25.0% |
| !!! | CTTTATTTTTTCTTTTGCTG+TGG | - | chr5.3:6000791-6000810 | None:intergenic | 25.0% |
| !!! | TTTTTTGTTTGCAGGATTTT+GGG | + | chr5.3:6002113-6002132 | MS.gene025830:intron | 25.0% |
| !!! | TTTTTTTATCCTTGACTCAA+AGG | - | chr5.3:5999912-5999931 | None:intergenic | 25.0% |
| !!! | TTTTTTTGTTTGCAGGATTT+TGG | + | chr5.3:6002112-6002131 | MS.gene025830:intron | 25.0% |
| AATAGAATAATTTGACGGAG+GGG | + | chr5.3:6000001-6000020 | MS.gene025830:intron | 30.0% | |
| ACAAGGAATTGGATAAAACT+AGG | - | chr5.3:6001814-6001833 | None:intergenic | 30.0% | |
| ACAATAGAATAATTTGACGG+AGG | + | chr5.3:5999999-6000018 | MS.gene025830:intron | 30.0% | |
| ACCACTAGATAAGTTCAATT+AGG | + | chr5.3:6000951-6000970 | MS.gene025830:intron | 30.0% | |
| AGATAACTGAATCTGATATC+CGG | + | chr5.3:6001243-6001262 | MS.gene025830:intron | 30.0% | |
| ATCAACCAAGAAATATGTCA+GGG | + | chr5.3:6000649-6000668 | MS.gene025830:intron | 30.0% | |
| ATTCATTCAATCTCGTGTTT+CGG | - | chr5.3:6000226-6000245 | None:intergenic | 30.0% | |
| CAACTTATGAAAACAGCTTA+TGG | - | chr5.3:6000834-6000853 | None:intergenic | 30.0% | |
| CAATAGAATAATTTGACGGA+GGG | + | chr5.3:6000000-6000019 | MS.gene025830:intron | 30.0% | |
| CTGCATAAAACAAAATGGAA+CGG | - | chr5.3:6000606-6000625 | None:intergenic | 30.0% | |
| CTTTAATATCCTTTGAGTCA+AGG | + | chr5.3:5999900-5999919 | MS.gene025830:intron | 30.0% | |
| GATTAAAGTTGTGCAATTTC+AGG | + | chr5.3:6000031-6000050 | MS.gene025830:intron | 30.0% | |
| TATCAACCAAGAAATATGTC+AGG | + | chr5.3:6000648-6000667 | MS.gene025830:intron | 30.0% | |
| TGCATAAAACAAAATGGAAC+GGG | - | chr5.3:6000605-6000624 | None:intergenic | 30.0% | |
| TGGAAATGAGTTATGATAAG+TGG | - | chr5.3:6000771-6000790 | None:intergenic | 30.0% | |
| TTAAAGTTGTGCAATTTCAG+GGG | + | chr5.3:6000033-6000052 | MS.gene025830:intron | 30.0% | |
| TTCACCAATTTGACATAATC+AGG | - | chr5.3:6001697-6001716 | None:intergenic | 30.0% | |
| TTGACGAAACATACAATTTC+GGG | + | chr5.3:6000090-6000109 | MS.gene025830:intron | 30.0% | |
| ! | CTTGGTTGATATAAAAGAGA+TGG | - | chr5.3:6000639-6000658 | None:intergenic | 30.0% |
| !! | GCTGTTTTCATAAGTTGTAT+TGG | + | chr5.3:6000837-6000856 | MS.gene025830:intron | 30.0% |
| !! | TTTTTGTTTGCAGGATTTTG+GGG | + | chr5.3:6002114-6002133 | MS.gene025830:intron | 30.0% |
| !!! | TCCCTTTTTTTTTTGTTTGC+AGG | + | chr5.3:6002105-6002124 | MS.gene025830:intron | 30.0% |
| AAATAAGCTGAAGACAGCTA+AGG | + | chr5.3:6000871-6000890 | MS.gene025830:intron | 35.0% | |
| ACAAATAAGCCAATCCAAAC+AGG | - | chr5.3:6000984-6001003 | None:intergenic | 35.0% | |
| ACATACCCTGACATATTTCT+TGG | - | chr5.3:6000657-6000676 | None:intergenic | 35.0% | |
| AGATAAGTTCAATTAGGCCA+AGG | + | chr5.3:6000957-6000976 | MS.gene025830:intron | 35.0% | |
| ATCAATCTTGCACAACTACA+TGG | - | chr5.3:6001965-6001984 | None:intergenic | 35.0% | |
| ATCAGATGTTTGTCCAAACA+GGG | - | chr5.3:6000741-6000760 | None:intergenic | 35.0% | |
| ATGCTGCAAAACAACATTGT+AGG | - | chr5.3:6002152-6002171 | None:intergenic | 35.0% | |
| ATTGTAATTTAGGCCCTGTT+TGG | + | chr5.3:6000725-6000744 | MS.gene025830:intron | 35.0% | |
| CCAACCTGATTATGTCAAAT+TGG | + | chr5.3:6001690-6001709 | MS.gene025830:CDS | 35.0% | |
| CCAATTTGACATAATCAGGT+TGG | - | chr5.3:6001693-6001712 | None:intergenic | 35.0% | |
| GATAAGTTCAATTAGGCCAA+GGG | + | chr5.3:6000958-6000977 | MS.gene025830:intron | 35.0% | |
| GCCTAATTGAACTTATCTAG+TGG | - | chr5.3:6000955-6000974 | None:intergenic | 35.0% | |
| GTAGTTATTACTAAGGTGAC+CGG | - | chr5.3:6001265-6001284 | None:intergenic | 35.0% | |
| TAAAGTTGTGCAATTTCAGG+GGG | + | chr5.3:6000034-6000053 | MS.gene025830:intron | 35.0% | |
| TATCAGATGTTTGTCCAAAC+AGG | - | chr5.3:6000742-6000761 | None:intergenic | 35.0% | |
| TGACGAAACATACAATTTCG+GGG | + | chr5.3:6000091-6000110 | MS.gene025830:intron | 35.0% | |
| TTCATTCAATCTCGTGTTTC+GGG | - | chr5.3:6000225-6000244 | None:intergenic | 35.0% | |
| TTGATTCAGAAGGTAAAGCT+AGG | + | chr5.3:6001980-6001999 | MS.gene025830:CDS | 35.0% | |
| ! | TTGTGCAAGATTGATTCAGA+AGG | + | chr5.3:6001970-6001989 | MS.gene025830:CDS | 35.0% |
| ! | TTTGTTATGCAGTGAAGAAG+AGG | + | chr5.3:6001483-6001502 | MS.gene025830:intron | 35.0% |
| !! | AAACTGATTCGAGTTGTTTC+AGG | - | chr5.3:6001214-6001233 | None:intergenic | 35.0% |
| !! | TATTGTTTTGCAAATACCCC+CGG | - | chr5.3:5999985-6000004 | None:intergenic | 35.0% |
| !!! | CGTTCCATTTTGTTTTATGC+AGG | + | chr5.3:6000604-6000623 | MS.gene025830:intron | 35.0% |
| AAAGCAGTCATGATGTCCAT+TGG | - | chr5.3:6001553-6001572 | None:intergenic | 40.0% | |
| AATGGATGTGCACAAGGAAT+TGG | - | chr5.3:6001825-6001844 | None:intergenic | 40.0% | |
| ACATAAGTGCAAAACTTCCG+GGG | + | chr5.3:5999965-5999984 | MS.gene025830:intron | 40.0% | |
| AGCTATACATGAGACACACA+AGG | - | chr5.3:6001411-6001430 | None:intergenic | 40.0% | |
| ATTTGGGAATTGGGAGCAAA+TGG | - | chr5.3:6001843-6001862 | None:intergenic | 40.0% | |
| CACATAAGTGCAAAACTTCC+GGG | + | chr5.3:5999964-5999983 | MS.gene025830:intron | 40.0% | |
| CATAAGCACGAGACTTTCTA+AGG | - | chr5.3:6001585-6001604 | None:intergenic | 40.0% | |
| CTTAGAAAGTCTCGTGCTTA+TGG | + | chr5.3:6001583-6001602 | MS.gene025830:CDS | 40.0% | |
| GACGAAACATACAATTTCGG+GGG | + | chr5.3:6000092-6000111 | MS.gene025830:intron | 40.0% | |
| GCACATAAGTGCAAAACTTC+CGG | + | chr5.3:5999963-5999982 | MS.gene025830:intron | 40.0% | |
| GGAACACGTCTCAAAGTAAA+TGG | - | chr5.3:6000344-6000363 | None:intergenic | 40.0% | |
| TGAGACGTGTTCCGTAAAAT+TGG | + | chr5.3:6000351-6000370 | MS.gene025830:intron | 40.0% | |
| TGTCTCAAGATTTATGCTCC+TGG | + | chr5.3:6001346-6001365 | MS.gene025830:intron | 40.0% | |
| TTCAGAAGGTAAAGCTAGGA+AGG | + | chr5.3:6001984-6002003 | MS.gene025830:CDS | 40.0% | |
| !! | ATCAGGTTGGTCACAATCTT+CGG | - | chr5.3:6001680-6001699 | None:intergenic | 40.0% |
| AATGATGCAACAAGACTGCG+CGG | - | chr5.3:6001909-6001928 | None:intergenic | 45.0% | |
| AGAAAGTCTCGTGCTTATGG+TGG | + | chr5.3:6001586-6001605 | MS.gene025830:CDS | 45.0% | |
| AGCTGGTATGTACACTCTCA+CGG | + | chr5.3:6000543-6000562 | MS.gene025830:intron | 45.0% | |
| ATGCTCTTGTGTGGTTGTCA+GGG | + | chr5.3:6002014-6002033 | MS.gene025830:CDS | 45.0% | |
| CAGAGAGGGTTTCAATTCGA+TGG | - | chr5.3:6000489-6000508 | None:intergenic | 45.0% | |
| CATAAGTGCAAAACTTCCGG+GGG | + | chr5.3:5999966-5999985 | MS.gene025830:intron | 45.0% | |
| GATAAAACTACGGGCCTAGT+TGG | - | chr5.3:6001177-6001196 | None:intergenic | 45.0% | |
| GGTAAAGCTAGGAAGGTTAC+CGG | + | chr5.3:6001991-6002010 | MS.gene025830:CDS | 45.0% | |
| !! | TTGTTTGCAGGATTTTGGGG+AGG | + | chr5.3:6002117-6002136 | MS.gene025830:intron | 45.0% |
| !!! | AGTTAATTTTTAAATTAAAT+AGG | - | chr5.3:6000187-6000206 | None:intergenic | 5.0% |
| !!! | GAATTTTATTTTTTTTTTTT+AGG | + | chr5.3:6000254-6000273 | MS.gene025830:intron | 5.0% |
| !!! | TATTTATTTTATTGATTTTT+GGG | + | chr5.3:6001930-6001949 | MS.gene025830:intron | 5.0% |
| !!! | TTATTTATTTTATTGATTTT+TGG | + | chr5.3:6001929-6001948 | MS.gene025830:intron | 5.0% |
| AACATTGTGCTCTGCGCAGA+GGG | - | chr5.3:6001722-6001741 | None:intergenic | 50.0% | |
| AATTAGGCCAAGGGCCTGTT+TGG | + | chr5.3:6000967-6000986 | MS.gene025830:intron | 50.0% | |
| ATGATGCAACAAGACTGCGC+GGG | - | chr5.3:6001908-6001927 | None:intergenic | 50.0% | |
| CTTGCACGAGGTCTTCATGA+AGG | + | chr5.3:6001610-6001629 | MS.gene025830:CDS | 50.0% | |
| CTTGTGTGGTTGTCAGGGTA+TGG | + | chr5.3:6002019-6002038 | MS.gene025830:intron | 50.0% | |
| GATGCTCTTGTGTGGTTGTC+AGG | + | chr5.3:6002013-6002032 | MS.gene025830:CDS | 50.0% | |
| GGAATTGCAGCAGCAACAAC+AGG | - | chr5.3:6001523-6001542 | None:intergenic | 50.0% | |
| GGAGCAAATGGATGTGCACA+AGG | - | chr5.3:6001831-6001850 | None:intergenic | 50.0% | |
| GTTCCAAGTGCAAAGACCCT+TGG | + | chr5.3:6001754-6001773 | MS.gene025830:CDS | 50.0% | |
| GTTGTTGCTGCTGCAATTCC+AGG | + | chr5.3:6001523-6001542 | MS.gene025830:CDS | 50.0% | |
| TAACATTGTGCTCTGCGCAG+AGG | - | chr5.3:6001723-6001742 | None:intergenic | 50.0% | |
| TCTCCAAGGGTCTTTGCACT+TGG | - | chr5.3:6001760-6001779 | None:intergenic | 50.0% | |
| TGCAAAGACCCTTGGAGAGT+GGG | + | chr5.3:6001762-6001781 | MS.gene025830:CDS | 50.0% | |
| ! | GTGAGAGTGTACATACCAGC+TGG | - | chr5.3:6000544-6000563 | None:intergenic | 50.0% |
| !! | GACAACCACACAAGAGCATC+CGG | - | chr5.3:6002013-6002032 | None:intergenic | 50.0% |
| !! | TCTCGTGTTTCGGGTTTGCA+TGG | - | chr5.3:6000216-6000235 | None:intergenic | 50.0% |
| ACCAGCTGGATGCGATTTGC+AGG | - | chr5.3:6000530-6000549 | None:intergenic | 55.0% | |
| AGCCAATCCAAACAGGCCCT+TGG | - | chr5.3:6000977-6000996 | None:intergenic | 55.0% | |
| GCTGGATGCGATTTGCAGGA+AGG | - | chr5.3:6000526-6000545 | None:intergenic | 55.0% | |
| GGATGCGATTTGCAGGAAGG+CGG | - | chr5.3:6000523-6000542 | None:intergenic | 55.0% | |
| GGTTACCGGATGCTCTTGTG+TGG | + | chr5.3:6002005-6002024 | MS.gene025830:CDS | 55.0% | |
| GTGCAAAGACCCTTGGAGAG+TGG | + | chr5.3:6001761-6001780 | MS.gene025830:CDS | 55.0% | |
| TCCTGCAAATCGCATCCAGC+TGG | + | chr5.3:6000526-6000545 | MS.gene025830:CDS | 55.0% | |
| TGCAATTCCAGGCGAGCCAA+TGG | + | chr5.3:6001534-6001553 | MS.gene025830:CDS | 55.0% | |
| TTGCAGGAAGGCGGAGATAG+AGG | - | chr5.3:6000514-6000533 | None:intergenic | 55.0% | |
| ! | CGGAGATAGAGGCACAGAGA+GGG | - | chr5.3:6000503-6000522 | None:intergenic | 55.0% |
| ! | GCTTATGGTGGTCTTGCACG+AGG | + | chr5.3:6001598-6001617 | MS.gene025830:CDS | 55.0% |
| !! | ATGATGTCCATTGGCTCGCC+TGG | - | chr5.3:6001544-6001563 | None:intergenic | 55.0% |
| AAGACCCTTGGAGAGTGGGC+TGG | + | chr5.3:6001766-6001785 | MS.gene025830:CDS | 60.0% | |
| GGCCAAGGGCCTGTTTGGAT+TGG | + | chr5.3:6000972-6000991 | MS.gene025830:intron | 60.0% | |
| TACGCCAGCCCACTCTCCAA+GGG | - | chr5.3:6001773-6001792 | None:intergenic | 60.0% | |
| TTACGCCAGCCCACTCTCCA+AGG | - | chr5.3:6001774-6001793 | None:intergenic | 60.0% | |
| ! | GCGGAGATAGAGGCACAGAG+AGG | - | chr5.3:6000504-6000523 | None:intergenic | 60.0% |
| GCAACAAGACTGCGCGGGCA+TGG | - | chr5.3:6001903-6001922 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 5999712 | 6002171 | 5999712 | ID=MS.gene025830 |
| chr5.3 | mRNA | 5999712 | 6002171 | 5999712 | ID=MS.gene025830.t1;Parent=MS.gene025830 |
| chr5.3 | exon | 5999712 | 5999720 | 5999712 | ID=MS.gene025830.t1.exon1;Parent=MS.gene025830.t1 |
| chr5.3 | CDS | 5999712 | 5999720 | 5999712 | ID=cds.MS.gene025830.t1;Parent=MS.gene025830.t1 |
| chr5.3 | exon | 6000475 | 6000547 | 6000475 | ID=MS.gene025830.t1.exon2;Parent=MS.gene025830.t1 |
| chr5.3 | CDS | 6000475 | 6000547 | 6000475 | ID=cds.MS.gene025830.t1;Parent=MS.gene025830.t1 |
| chr5.3 | exon | 6001500 | 6001789 | 6001500 | ID=MS.gene025830.t1.exon3;Parent=MS.gene025830.t1 |
| chr5.3 | CDS | 6001500 | 6001789 | 6001500 | ID=cds.MS.gene025830.t1;Parent=MS.gene025830.t1 |
| chr5.3 | exon | 6001970 | 6002035 | 6001970 | ID=MS.gene025830.t1.exon4;Parent=MS.gene025830.t1 |
| chr5.3 | CDS | 6001970 | 6002035 | 6001970 | ID=cds.MS.gene025830.t1;Parent=MS.gene025830.t1 |
| chr5.3 | exon | 6002127 | 6002171 | 6002127 | ID=MS.gene025830.t1.exon5;Parent=MS.gene025830.t1 |
| chr5.3 | CDS | 6002127 | 6002171 | 6002127 | ID=cds.MS.gene025830.t1;Parent=MS.gene025830.t1 |
| Gene Sequence |
| Protein sequence |
