Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70215.t1 | XP_003630279.1 | 100 | 143 | 0 | 0 | 1 | 143 | 1 | 143 | 2.50E-73 | 284.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70215.t1 | Q9XHS0 | 72.5 | 142 | 39 | 0 | 1 | 142 | 1 | 142 | 2.4e-53 | 209.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70215.t1 | G7LE33 | 100.0 | 143 | 0 | 0 | 1 | 143 | 1 | 143 | 1.8e-73 | 284.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050252 | MS.gene70215 | 0.846965 | 1.56E-59 | -1.69E-46 |
| MS.gene050290 | MS.gene70215 | 0.904805 | 8.36E-80 | -1.69E-46 |
| MS.gene050916 | MS.gene70215 | 0.809204 | 2.12E-50 | -1.69E-46 |
| MS.gene051746 | MS.gene70215 | 0.820361 | 7.14E-53 | -1.69E-46 |
| MS.gene051748 | MS.gene70215 | 0.820946 | 5.24E-53 | -1.69E-46 |
| MS.gene051850 | MS.gene70215 | 0.822611 | 2.16E-53 | -1.69E-46 |
| MS.gene051903 | MS.gene70215 | 0.860356 | 2.19E-63 | -1.69E-46 |
| MS.gene053109 | MS.gene70215 | 0.808301 | 3.31E-50 | -1.69E-46 |
| MS.gene053952 | MS.gene70215 | 0.837208 | 5.95E-57 | -1.69E-46 |
| MS.gene054733 | MS.gene70215 | 0.805803 | 1.12E-49 | -1.69E-46 |
| MS.gene054937 | MS.gene70215 | 0.902284 | 1.13E-78 | -1.69E-46 |
| MS.gene056075 | MS.gene70215 | 0.837374 | 5.40E-57 | -1.69E-46 |
| MS.gene056917 | MS.gene70215 | 0.827918 | 1.20E-54 | -1.69E-46 |
| MS.gene057052 | MS.gene70215 | 0.832739 | 7.96E-56 | -1.69E-46 |
| MS.gene057092 | MS.gene70215 | 0.810992 | 8.75E-51 | -1.69E-46 |
| MS.gene057094 | MS.gene70215 | 0.85861 | 7.32E-63 | -1.69E-46 |
| MS.gene057206 | MS.gene70215 | 0.814286 | 1.66E-51 | -1.69E-46 |
| MS.gene057235 | MS.gene70215 | 0.824367 | 8.39E-54 | -1.69E-46 |
| MS.gene058354 | MS.gene70215 | 0.807073 | 6.04E-50 | -1.69E-46 |
| MS.gene058364 | MS.gene70215 | 0.807731 | 4.38E-50 | -1.69E-46 |
| MS.gene059726 | MS.gene70215 | 0.815667 | 8.22E-52 | -1.69E-46 |
| MS.gene06001 | MS.gene70215 | 0.837766 | 4.28E-57 | -1.69E-46 |
| MS.gene060856 | MS.gene70215 | 0.85654 | 3.00E-62 | -1.69E-46 |
| MS.gene061145 | MS.gene70215 | 0.86811 | 8.33E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene70215 | MS.gene000610 | PPI |
| MS.gene03201 | MS.gene70215 | PPI |
| MS.gene70215 | MS.gene28384 | PPI |
| MS.gene70215 | MS.gene025830 | PPI |
| MS.gene02807 | MS.gene70215 | PPI |
| MS.gene57391 | MS.gene70215 | PPI |
| MS.gene09780 | MS.gene70215 | PPI |
| MS.gene013786 | MS.gene70215 | PPI |
| MS.gene46264 | MS.gene70215 | PPI |
| MS.gene030614 | MS.gene70215 | PPI |
| MS.gene09762 | MS.gene70215 | PPI |
| MS.gene70215 | MS.gene09779 | PPI |
| MS.gene70215 | MS.gene65180 | PPI |
| MS.gene70215 | MS.gene053443 | PPI |
| MS.gene70215 | MS.gene034249 | PPI |
| MS.gene70215 | MS.gene015411 | PPI |
| MS.gene70215 | MS.gene073888 | PPI |
| MS.gene70215 | MS.gene02572 | PPI |
| MS.gene70215 | MS.gene053224 | PPI |
| MS.gene53517 | MS.gene70215 | PPI |
| MS.gene28384 | MS.gene70215 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70215.t1 | MTR_8g093770 | 100.000 | 143 | 0 | 0 | 1 | 143 | 1 | 143 | 1.51e-102 | 290 |
| MS.gene70215.t1 | MTR_5g012890 | 96.000 | 125 | 5 | 0 | 19 | 143 | 18 | 142 | 1.01e-86 | 249 |
| MS.gene70215.t1 | MTR_4g006830 | 88.889 | 144 | 15 | 1 | 1 | 143 | 1 | 144 | 2.91e-83 | 241 |
| MS.gene70215.t1 | MTR_5g012890 | 91.111 | 90 | 8 | 0 | 19 | 108 | 18 | 107 | 1.38e-56 | 172 |
| MS.gene70215.t1 | MTR_4g073510 | 66.667 | 54 | 17 | 1 | 1 | 53 | 1 | 54 | 3.27e-15 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70215.t1 | AT2G32060 | 76.000 | 125 | 29 | 1 | 19 | 143 | 21 | 144 | 1.29e-67 | 201 |
| MS.gene70215.t1 | AT2G32060 | 76.000 | 125 | 29 | 1 | 19 | 143 | 21 | 144 | 1.29e-67 | 201 |
| MS.gene70215.t1 | AT2G32060 | 76.000 | 125 | 29 | 1 | 19 | 143 | 21 | 144 | 1.29e-67 | 201 |
| MS.gene70215.t1 | AT1G15930 | 74.400 | 125 | 31 | 1 | 19 | 143 | 21 | 144 | 3.49e-64 | 192 |
| MS.gene70215.t1 | AT1G15930 | 74.400 | 125 | 31 | 1 | 19 | 143 | 21 | 144 | 3.49e-64 | 192 |
Find 33 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACCAACTTGACGTAATC+AGG | 0.299059 | 4.1:-8319489 | None:intergenic |
| TCTCCAAGGGTCTTTGCATT+TGG | 0.313809 | 4.1:-8319552 | None:intergenic |
| GTTGCTGCAGCTGGAATTCC+AGG | 0.331115 | 4.1:+8319318 | MS.gene70215:CDS |
| AATCAACTTGCAATTATGTC+TGG | 0.359633 | 4.1:+8318700 | None:intergenic |
| ATTCCAGCTGCAGCAACAAC+TGG | 0.406602 | 4.1:-8319312 | None:intergenic |
| TGCAAAGACCCTTGGAGAAT+GGG | 0.412944 | 4.1:+8319557 | MS.gene70215:CDS |
| ATAATATCCATTGGCTCCCC+TGG | 0.419454 | 4.1:-8319336 | None:intergenic |
| GAGCCAGTTGTTGCTGCAGC+TGG | 0.425162 | 4.1:+8319309 | MS.gene70215:CDS |
| TTGAGAAAGTCACGCGCTTA+TGG | 0.428624 | 4.1:+8319378 | MS.gene70215:CDS |
| GACACTGTGTTCAGCACAAA+GGG | 0.447539 | 4.1:-8319514 | None:intergenic |
| ATGCAAAGACCCTTGGAGAA+TGG | 0.451113 | 4.1:+8319556 | MS.gene70215:CDS |
| GGAAAAGCTAGGAAGGTAAC+TGG | 0.463250 | 4.1:+8320278 | MS.gene70215:CDS |
| TTGCTCCTGTGTGGTTGTCA+AGG | 0.525394 | 4.1:+8320301 | MS.gene70215:CDS |
| GTTCCAAATGCAAAGACCCT+TGG | 0.532260 | 4.1:+8319549 | MS.gene70215:CDS |
| TTGCTGCAGCTGGAATTCCA+GGG | 0.537879 | 4.1:+8319319 | MS.gene70215:CDS |
| ATCAACTTGCAATTATGTCT+GGG | 0.539041 | 4.1:+8318701 | None:intergenic |
| TTGTGCAAAATTGATTCAGA+AGG | 0.565495 | 4.1:+8320257 | MS.gene70215:CDS |
| ACTGCAGTCATAATATCCAT+TGG | 0.568889 | 4.1:-8319345 | None:intergenic |
| TGCTGCAGCTGGAATTCCAG+GGG | 0.575795 | 4.1:+8319320 | MS.gene70215:CDS |
| TTGATTCAGAAGGAAAAGCT+AGG | 0.578774 | 4.1:+8320267 | MS.gene70215:CDS |
| ACAGCTCTGTGTTCTTGCTG+AGG | 0.587565 | 4.1:+8319455 | MS.gene70215:CDS |
| CCAACCTGATTACGTCAAGT+TGG | 0.591510 | 4.1:+8319485 | MS.gene70215:CDS |
| TTACACCAGCCCATTCTCCA+AGG | 0.592149 | 4.1:-8319566 | None:intergenic |
| TTCAGAAGGAAAAGCTAGGA+AGG | 0.596975 | 4.1:+8320271 | MS.gene70215:CDS |
| TGGAATTCCAGGGGAGCCAA+TGG | 0.602144 | 4.1:+8319329 | MS.gene70215:CDS |
| AGAAAGTCACGCGCTTATGG+TGG | 0.613205 | 4.1:+8319381 | MS.gene70215:CDS |
| CCAACTTGACGTAATCAGGT+TGG | 0.614249 | 4.1:-8319485 | None:intergenic |
| AAGACCCTTGGAGAATGGGC+TGG | 0.615483 | 4.1:+8319561 | MS.gene70215:CDS |
| TGACACTGTGTTCAGCACAA+AGG | 0.628583 | 4.1:-8319515 | None:intergenic |
| GCTTATGGTGGTCTTGCACG+TGG | 0.635715 | 4.1:+8319393 | MS.gene70215:CDS |
| GGTAACTGGTTGCTCCTGTG+TGG | 0.641819 | 4.1:+8320292 | MS.gene70215:CDS |
| TACACCAGCCCATTCTCCAA+GGG | 0.643748 | 4.1:-8319565 | None:intergenic |
| ACATACCTTGACAACCACAC+AGG | 0.682837 | 4.1:-8320306 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATATAATTGAGAATTG+TGG | - | chr4.1:8319647-8319666 | None:intergenic | 15.0% |
| !! | CATATAGATTAAAATAAATG+AGG | - | chr4.1:8320129-8320148 | None:intergenic | 15.0% |
| !! | TATAAAATGTTATTGCTTAT+TGG | - | chr4.1:8319790-8319809 | None:intergenic | 15.0% |
| !!! | CATGAATTACTTTAAAATAA+GGG | + | chr4.1:8319678-8319697 | MS.gene70215:intron | 15.0% |
| !!! | TCATGAATTACTTTAAAATA+AGG | + | chr4.1:8319677-8319696 | MS.gene70215:intron | 15.0% |
| !!! | TTAACTATTTTCATTTTTGT+AGG | + | chr4.1:8320385-8320404 | MS.gene70215:intron | 15.0% |
| !!! | TTATAATAACTTTTTGATCT+GGG | - | chr4.1:8319096-8319115 | None:intergenic | 15.0% |
| !!! | TTTATAATAACTTTTTGATC+TGG | - | chr4.1:8319097-8319116 | None:intergenic | 15.0% |
| !! | AATAGTTAAGCATACATAAA+CGG | - | chr4.1:8320374-8320393 | None:intergenic | 20.0% |
| !! | ATTGATTATGAGGATAATTA+TGG | + | chr4.1:8319044-8319063 | MS.gene70215:intron | 20.0% |
| !! | CAAAACCAATATAAAACAAA+AGG | - | chr4.1:8320039-8320058 | None:intergenic | 20.0% |
| !!! | AATTACTTTAAAATAAGGGT+GGG | + | chr4.1:8319682-8319701 | MS.gene70215:intron | 20.0% |
| !!! | ATTTGCCTTTTGTTTTATAT+TGG | + | chr4.1:8320031-8320050 | MS.gene70215:intron | 20.0% |
| !!! | TTTTCATTTTTGTAGGATTT+CGG | + | chr4.1:8320392-8320411 | MS.gene70215:intron | 20.0% |
| ! | AAATTCAGAAGTTATTGTCT+TGG | + | chr4.1:8320165-8320184 | MS.gene70215:intron | 25.0% |
| ! | ACAAAAAGTTTCTCTATAGT+CGG | - | chr4.1:8319179-8319198 | None:intergenic | 25.0% |
| ! | CTATGTTTATAGTAATGCAA+GGG | - | chr4.1:8319595-8319614 | None:intergenic | 25.0% |
| ! | GACAATAACTTCTGAATTTA+AGG | - | chr4.1:8320164-8320183 | None:intergenic | 25.0% |
| ! | TCAAATATGTCATAAGGAAA+TGG | - | chr4.1:8319624-8319643 | None:intergenic | 25.0% |
| ! | TCTATGTTTATAGTAATGCA+AGG | - | chr4.1:8319596-8319615 | None:intergenic | 25.0% |
| !!! | AGTACTGATATTGAAATAGT+TGG | + | chr4.1:8318888-8318907 | MS.gene70215:intron | 25.0% |
| !!! | GAATTACTTTAAAATAAGGG+TGG | + | chr4.1:8319681-8319700 | MS.gene70215:intron | 25.0% |
| ATTTCTTATAGTTACTACCG+AGG | - | chr4.1:8318930-8318949 | None:intergenic | 30.0% | |
| CGGTTTCATTAATTGCTTAT+TGG | - | chr4.1:8319763-8319782 | None:intergenic | 30.0% | |
| GAATCCAAACATTTCTATTC+CGG | - | chr4.1:8320339-8320358 | None:intergenic | 30.0% | |
| TCATTTCATGCATAACAGTT+AGG | - | chr4.1:8319848-8319867 | None:intergenic | 30.0% | |
| TGTTGTTCAGTTATTGTTTC+TGG | + | chr4.1:8319963-8319982 | MS.gene70215:intron | 30.0% | |
| TTGTGGTCAAATATGTCATA+AGG | - | chr4.1:8319630-8319649 | None:intergenic | 30.0% | |
| TTTCTTATAGTTACTACCGA+GGG | - | chr4.1:8318929-8318948 | None:intergenic | 30.0% | |
| ! | AACTTCTGAATTTAAGGCAA+AGG | - | chr4.1:8320158-8320177 | None:intergenic | 30.0% |
| ! | TGTGAGATTCTACTTGTTAA+TGG | + | chr4.1:8318753-8318772 | MS.gene70215:intron | 30.0% |
| ! | TTGTGCAAAATTGATTCAGA+AGG | + | chr4.1:8320257-8320276 | MS.gene70215:CDS | 30.0% |
| !! | AACTTTTTGATCTGGGATTA+AGG | - | chr4.1:8319089-8319108 | None:intergenic | 30.0% |
| !! | AAGGTTGTACACTATTTCTA+TGG | - | chr4.1:8319899-8319918 | None:intergenic | 30.0% |
| !! | TGTACACTATTTCTATGGAT+TGG | - | chr4.1:8319894-8319913 | None:intergenic | 30.0% |
| ACAAGTAGAATCTCACAAAC+AGG | - | chr4.1:8318750-8318769 | None:intergenic | 35.0% | |
| ACTGCAGTCATAATATCCAT+TGG | - | chr4.1:8319348-8319367 | None:intergenic | 35.0% | |
| ATGGTCAAATGAAGCTAATG+AGG | + | chr4.1:8319063-8319082 | MS.gene70215:intron | 35.0% | |
| TCATCCGGAATAGAAATGTT+TGG | + | chr4.1:8320332-8320351 | MS.gene70215:intron | 35.0% | |
| TTGATTCAGAAGGAAAAGCT+AGG | + | chr4.1:8320267-8320286 | MS.gene70215:CDS | 35.0% | |
| TTTCATGCATAACAGTTAGG+AGG | - | chr4.1:8319845-8319864 | None:intergenic | 35.0% | |
| ! | AATTTTGCACAACTGCATGA+AGG | - | chr4.1:8320249-8320268 | None:intergenic | 35.0% |
| ! | CATTGCGATCATTGATTATG+AGG | + | chr4.1:8319034-8319053 | MS.gene70215:intron | 35.0% |
| ! | GTCAAGGTATGTTTTTCATC+CGG | + | chr4.1:8320317-8320336 | MS.gene70215:intron | 35.0% |
| ! | TGTTATTGCTTATTGGTGCT+CGG | - | chr4.1:8319783-8319802 | None:intergenic | 35.0% |
| !! | ACACTATTTCTATGGATTGG+AGG | - | chr4.1:8319891-8319910 | None:intergenic | 35.0% |
| !! | ATTGTTTCTGGTGTATTCCT+TGG | + | chr4.1:8319975-8319994 | MS.gene70215:intron | 35.0% |
| !! | TTGTTTCTGGTGTATTCCTT+GGG | + | chr4.1:8319976-8319995 | MS.gene70215:intron | 35.0% |
| AAAAACTCAAGACGCACACA+TGG | - | chr4.1:8319216-8319235 | None:intergenic | 40.0% | |
| ATTGGCACCTCTCATGATTA+GGG | - | chr4.1:8319745-8319764 | None:intergenic | 40.0% | |
| CAACCTTTGAATGTCAAGAG+CGG | + | chr4.1:8319912-8319931 | MS.gene70215:intron | 40.0% | |
| TATTGGCACCTCTCATGATT+AGG | - | chr4.1:8319746-8319765 | None:intergenic | 40.0% | |
| TTCACCAACTTGACGTAATC+AGG | - | chr4.1:8319492-8319511 | None:intergenic | 40.0% | |
| TTCAGAAGGAAAAGCTAGGA+AGG | + | chr4.1:8320271-8320290 | MS.gene70215:CDS | 40.0% | |
| ! | ATTTTTGTAGGATTTCGGCG+AGG | + | chr4.1:8320397-8320416 | MS.gene70215:intron | 40.0% |
| ACAGAGTTCAGAGAGGATAC+AGG | - | chr4.1:8320104-8320123 | None:intergenic | 45.0% | |
| ACATACCTTGACAACCACAC+AGG | - | chr4.1:8320309-8320328 | None:intergenic | 45.0% | |
| AGAGAGGATACAGGGTAAGA+GGG | - | chr4.1:8320095-8320114 | None:intergenic | 45.0% | |
| ATCCTGACCCTAATCATGAG+AGG | + | chr4.1:8319735-8319754 | MS.gene70215:intron | 45.0% | |
| ATGCAAAGACCCTTGGAGAA+TGG | + | chr4.1:8319556-8319575 | MS.gene70215:CDS | 45.0% | |
| CAGAGTTCAGAGAGGATACA+GGG | - | chr4.1:8320103-8320122 | None:intergenic | 45.0% | |
| CCAACCTGATTACGTCAAGT+TGG | + | chr4.1:8319485-8319504 | MS.gene70215:CDS | 45.0% | |
| CCAACTTGACGTAATCAGGT+TGG | - | chr4.1:8319488-8319507 | None:intergenic | 45.0% | |
| GACACTGTGTTCAGCACAAA+GGG | - | chr4.1:8319517-8319536 | None:intergenic | 45.0% | |
| GATCTGATAGTCATAGCCCT+CGG | + | chr4.1:8318910-8318929 | MS.gene70215:intron | 45.0% | |
| GATTTGCACCACGATGTTGA+GGG | - | chr4.1:8319718-8319737 | None:intergenic | 45.0% | |
| GGAAAAGCTAGGAAGGTAAC+TGG | + | chr4.1:8320278-8320297 | MS.gene70215:CDS | 45.0% | |
| GTTCCAAATGCAAAGACCCT+TGG | + | chr4.1:8319549-8319568 | MS.gene70215:CDS | 45.0% | |
| TCTCCAAGGGTCTTTGCATT+TGG | - | chr4.1:8319555-8319574 | None:intergenic | 45.0% | |
| TGACACTGTGTTCAGCACAA+AGG | - | chr4.1:8319518-8319537 | None:intergenic | 45.0% | |
| TGAGGTTACAGAGTTCAGAG+AGG | - | chr4.1:8320111-8320130 | None:intergenic | 45.0% | |
| TGCAAAGACCCTTGGAGAAT+GGG | + | chr4.1:8319557-8319576 | MS.gene70215:CDS | 45.0% | |
| TTGAGAAAGTCACGCGCTTA+TGG | + | chr4.1:8319378-8319397 | MS.gene70215:CDS | 45.0% | |
| !! | ATAATATCCATTGGCTCCCC+TGG | - | chr4.1:8319339-8319358 | None:intergenic | 45.0% |
| !!! | AAATTAAAAAATTTAATTTG+TGG | + | chr4.1:8319008-8319027 | MS.gene70215:intron | 5.0% |
| ACAGCTCTGTGTTCTTGCTG+AGG | + | chr4.1:8319455-8319474 | MS.gene70215:CDS | 50.0% | |
| AGAAAGTCACGCGCTTATGG+TGG | + | chr4.1:8319381-8319400 | MS.gene70215:CDS | 50.0% | |
| ATTCCAGCTGCAGCAACAAC+TGG | - | chr4.1:8319315-8319334 | None:intergenic | 50.0% | |
| CACCTCTCATGATTAGGGTC+AGG | - | chr4.1:8319740-8319759 | None:intergenic | 50.0% | |
| CAGAGAGGATACAGGGTAAG+AGG | - | chr4.1:8320096-8320115 | None:intergenic | 50.0% | |
| CCACCGCTCTTGACATTCAA+AGG | - | chr4.1:8319918-8319937 | None:intergenic | 50.0% | |
| CCTTTGAATGTCAAGAGCGG+TGG | + | chr4.1:8319915-8319934 | MS.gene70215:intron | 50.0% | |
| CTGGTGTATTCCTTGGGTCT+GGG | + | chr4.1:8319982-8320001 | MS.gene70215:intron | 50.0% | |
| GAGAGGATACAGGGTAAGAG+GGG | - | chr4.1:8320094-8320113 | None:intergenic | 50.0% | |
| GGATTTGCACCACGATGTTG+AGG | - | chr4.1:8319719-8319738 | None:intergenic | 50.0% | |
| TACACCAGCCCATTCTCCAA+GGG | - | chr4.1:8319568-8319587 | None:intergenic | 50.0% | |
| TATAGTCGGCGAGATTCACG+TGG | - | chr4.1:8319165-8319184 | None:intergenic | 50.0% | |
| TCTGGTGTATTCCTTGGGTC+TGG | + | chr4.1:8319981-8320000 | MS.gene70215:intron | 50.0% | |
| TGACATCTCCCTCAACATCG+TGG | + | chr4.1:8319707-8319726 | MS.gene70215:intron | 50.0% | |
| TGGTGTATTCCTTGGGTCTG+GGG | + | chr4.1:8319983-8320002 | MS.gene70215:intron | 50.0% | |
| TTACACCAGCCCATTCTCCA+AGG | - | chr4.1:8319569-8319588 | None:intergenic | 50.0% | |
| TTGCTCCTGTGTGGTTGTCA+AGG | + | chr4.1:8320301-8320320 | MS.gene70215:CDS | 50.0% | |
| TTGCTGCAGCTGGAATTCCA+GGG | + | chr4.1:8319319-8319338 | MS.gene70215:CDS | 50.0% | |
| AAGACCCTTGGAGAATGGGC+TGG | + | chr4.1:8319561-8319580 | MS.gene70215:CDS | 55.0% | |
| GGTAACTGGTTGCTCCTGTG+TGG | + | chr4.1:8320292-8320311 | MS.gene70215:CDS | 55.0% | |
| GTTGCTGCAGCTGGAATTCC+AGG | + | chr4.1:8319318-8319337 | MS.gene70215:CDS | 55.0% | |
| TGCTGCAGCTGGAATTCCAG+GGG | + | chr4.1:8319320-8319339 | MS.gene70215:CDS | 55.0% | |
| TGGAATTCCAGGGGAGCCAA+TGG | + | chr4.1:8319329-8319348 | MS.gene70215:CDS | 55.0% | |
| TGTATTCCTTGGGTCTGGGG+AGG | + | chr4.1:8319986-8320005 | MS.gene70215:intron | 55.0% | |
| ! | GCTTATGGTGGTCTTGCACG+TGG | + | chr4.1:8319393-8319412 | MS.gene70215:CDS | 55.0% |
| GAGCCAGTTGTTGCTGCAGC+TGG | + | chr4.1:8319309-8319328 | MS.gene70215:CDS | 60.0% | |
| AACCAGCCTCCCCAGACCCA+AGG | - | chr4.1:8319995-8320014 | None:intergenic | 65.0% | |
| TTCCTTGGGTCTGGGGAGGC+TGG | + | chr4.1:8319990-8320009 | MS.gene70215:intron | 65.0% | |
| ! | TGGGTCTGGGGAGGCTGGTT+CGG | + | chr4.1:8319995-8320014 | MS.gene70215:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 8318715 | 8320466 | 8318715 | ID=MS.gene70215 |
| chr4.1 | mRNA | 8318715 | 8320466 | 8318715 | ID=MS.gene70215.t1;Parent=MS.gene70215 |
| chr4.1 | exon | 8318715 | 8318722 | 8318715 | ID=MS.gene70215.t1.exon1;Parent=MS.gene70215.t1 |
| chr4.1 | CDS | 8318715 | 8318722 | 8318715 | ID=cds.MS.gene70215.t1;Parent=MS.gene70215.t1 |
| chr4.1 | exon | 8319287 | 8319584 | 8319287 | ID=MS.gene70215.t1.exon2;Parent=MS.gene70215.t1 |
| chr4.1 | CDS | 8319287 | 8319584 | 8319287 | ID=cds.MS.gene70215.t1;Parent=MS.gene70215.t1 |
| chr4.1 | exon | 8320257 | 8320322 | 8320257 | ID=MS.gene70215.t1.exon3;Parent=MS.gene70215.t1 |
| chr4.1 | CDS | 8320257 | 8320322 | 8320257 | ID=cds.MS.gene70215.t1;Parent=MS.gene70215.t1 |
| chr4.1 | exon | 8320407 | 8320466 | 8320407 | ID=MS.gene70215.t1.exon4;Parent=MS.gene70215.t1 |
| chr4.1 | CDS | 8320407 | 8320466 | 8320407 | ID=cds.MS.gene70215.t1;Parent=MS.gene70215.t1 |
| Gene Sequence |
| Protein sequence |
