Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034249.t1 | XP_003604229.1 | 99.3 | 144 | 1 | 0 | 1 | 144 | 1 | 144 | 8.50E-74 | 286.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034249.t1 | Q9XHS0 | 72.2 | 144 | 39 | 1 | 1 | 144 | 1 | 143 | 7.1e-53 | 208.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034249.t1 | G7JDB2 | 99.3 | 144 | 1 | 0 | 1 | 144 | 1 | 144 | 6.1e-74 | 286.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene034249 | MS.gene073888 | PPI |
| MS.gene02807 | MS.gene034249 | PPI |
| MS.gene57391 | MS.gene034249 | PPI |
| MS.gene02572 | MS.gene034249 | PPI |
| MS.gene09780 | MS.gene034249 | PPI |
| MS.gene46264 | MS.gene034249 | PPI |
| MS.gene030614 | MS.gene034249 | PPI |
| MS.gene09762 | MS.gene034249 | PPI |
| MS.gene053224 | MS.gene034249 | PPI |
| MS.gene015411 | MS.gene034249 | PPI |
| MS.gene000610 | MS.gene034249 | PPI |
| MS.gene034249 | MS.gene025830 | PPI |
| MS.gene65180 | MS.gene034249 | PPI |
| MS.gene09779 | MS.gene034249 | PPI |
| MS.gene03201 | MS.gene034249 | PPI |
| MS.gene70215 | MS.gene034249 | PPI |
| MS.gene53517 | MS.gene034249 | PPI |
| MS.gene28384 | MS.gene034249 | PPI |
| MS.gene034249 | MS.gene053443 | PPI |
| MS.gene013786 | MS.gene034249 | PPI |
| MS.gene025830 | MS.gene034249 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034249.t1 | MTR_4g006830 | 99.306 | 144 | 1 | 0 | 1 | 144 | 1 | 144 | 3.70e-102 | 288 |
| MS.gene034249.t1 | MTR_5g012890 | 96.000 | 125 | 5 | 0 | 20 | 144 | 18 | 142 | 2.04e-85 | 246 |
| MS.gene034249.t1 | MTR_8g093770 | 92.063 | 126 | 10 | 0 | 19 | 144 | 18 | 143 | 2.74e-83 | 241 |
| MS.gene034249.t1 | MTR_5g012890 | 91.111 | 90 | 8 | 0 | 20 | 109 | 18 | 107 | 1.79e-55 | 169 |
| MS.gene034249.t1 | MTR_4g073510 | 75.926 | 54 | 13 | 0 | 1 | 54 | 1 | 54 | 1.24e-20 | 86.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034249.t1 | AT2G32060 | 72.800 | 125 | 33 | 1 | 20 | 144 | 21 | 144 | 1.86e-64 | 193 |
| MS.gene034249.t1 | AT2G32060 | 72.800 | 125 | 33 | 1 | 20 | 144 | 21 | 144 | 1.86e-64 | 193 |
| MS.gene034249.t1 | AT2G32060 | 72.800 | 125 | 33 | 1 | 20 | 144 | 21 | 144 | 1.86e-64 | 193 |
| MS.gene034249.t1 | AT1G15930 | 74.400 | 125 | 31 | 1 | 20 | 144 | 21 | 144 | 2.12e-63 | 191 |
| MS.gene034249.t1 | AT1G15930 | 74.400 | 125 | 31 | 1 | 20 | 144 | 21 | 144 | 2.12e-63 | 191 |
Find 40 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGGCCGTGGTCAGGATTT+TGG | 0.169284 | 4.1:-88660383 | MS.gene034249:intron |
| CCTGTTGCCGCCCCTGCTGC+TGG | 0.273301 | 4.1:-88661167 | MS.gene034249:CDS |
| GCCCCTGCTGCTGGAATTCC+AGG | 0.275871 | 4.1:-88661158 | MS.gene034249:CDS |
| CCAGCAGCAGGGGCGGCAAC+AGG | 0.352403 | 4.1:+88661167 | None:intergenic |
| TCGCCTGGAATTCCAGCAGC+AGG | 0.403859 | 4.1:+88661155 | None:intergenic |
| ATGATATCCATTGGCTCGCC+TGG | 0.406108 | 4.1:+88661140 | None:intergenic |
| TTGACGAGTTTAACATAGTC+AGG | 0.447855 | 4.1:+88660987 | None:intergenic |
| TGCGAAGACACTTGGAGAAT+GGG | 0.448518 | 4.1:-88660919 | MS.gene034249:CDS |
| GTGCGAAGACACTTGGAGAA+TGG | 0.456187 | 4.1:-88660920 | MS.gene034249:CDS |
| AAATCTACAAGGAAAATGTC+AGG | 0.461137 | 4.1:-88662645 | None:intergenic |
| CTGCTCCTGTGTGGTGGTCA+AGG | 0.470678 | 4.1:-88660478 | MS.gene034249:intron |
| GTGCTGCAGAACAACATTGT+AGG | 0.480720 | 4.1:+88660346 | None:intergenic |
| CTGCCTTGCAACTTGTGCTT+AGG | 0.487542 | 4.1:-88661115 | MS.gene034249:CDS |
| GGAAAAGCTAGGAAGGTAAC+TGG | 0.499679 | 4.1:-88660501 | MS.gene034249:CDS |
| CGCCTGGAATTCCAGCAGCA+GGG | 0.501362 | 4.1:+88661156 | None:intergenic |
| CTTGCACGTGGCCTCCATGA+AGG | 0.502412 | 4.1:-88661071 | MS.gene034249:CDS |
| GTTCCTAGTGCGAAGACACT+TGG | 0.512562 | 4.1:-88660927 | MS.gene034249:CDS |
| TCTCCAAGTGTCTTCGCACT+AGG | 0.516396 | 4.1:+88660924 | None:intergenic |
| CTTAGGAAGTCACTGGCATA+TGG | 0.527492 | 4.1:-88661098 | MS.gene034249:CDS |
| TGGAATTCCAGCAGCAGGGG+CGG | 0.535141 | 4.1:+88661160 | None:intergenic |
| GCCTGGAATTCCAGCAGCAG+GGG | 0.541122 | 4.1:+88661157 | None:intergenic |
| CGAGTTTAACATAGTCAGGC+TGG | 0.546098 | 4.1:+88660991 | None:intergenic |
| AGGAAGTCACTGGCATATGG+TGG | 0.559341 | 4.1:-88661095 | MS.gene034249:CDS |
| AACTGGCTGCTCCTGTGTGG+TGG | 0.564611 | 4.1:-88660484 | MS.gene034249:CDS |
| AAGGCAGTCATGATATCCAT+TGG | 0.578468 | 4.1:+88661131 | None:intergenic |
| ACTTGTGCTTAGGAAGTCAC+TGG | 0.586574 | 4.1:-88661105 | MS.gene034249:CDS |
| CTCCGAGGGAAAAGCTAGGA+AGG | 0.586953 | 4.1:-88660508 | MS.gene034249:CDS |
| TGGAATTCCAGGCGAGCCAA+TGG | 0.589710 | 4.1:-88661147 | MS.gene034249:CDS |
| CTTCCTAAGCACAAGTTGCA+AGG | 0.603957 | 4.1:+88661112 | None:intergenic |
| AAGACACTTGGAGAATGGGC+CGG | 0.606076 | 4.1:-88660915 | MS.gene034249:CDS |
| TGACTATGTTAAACTCGTCA+AGG | 0.611176 | 4.1:-88660985 | MS.gene034249:CDS |
| GCATATGGTGGGCTTGCACG+TGG | 0.612030 | 4.1:-88661083 | MS.gene034249:CDS |
| GGAAGTCACTGGCATATGGT+GGG | 0.612935 | 4.1:-88661094 | MS.gene034249:CDS |
| TTGACTCCGAGGGAAAAGCT+AGG | 0.623449 | 4.1:-88660512 | MS.gene034249:CDS |
| AATCTACAAGGAAAATGTCA+GGG | 0.638387 | 4.1:-88662644 | None:intergenic |
| GGTAACTGGCTGCTCCTGTG+TGG | 0.642490 | 4.1:-88660487 | MS.gene034249:CDS |
| AAAGTAATTGAGAAGAACAC+AGG | 0.649204 | 4.1:-88661044 | MS.gene034249:CDS |
| TTGTGTAAGATTGACTCCGA+GGG | 0.654398 | 4.1:-88660522 | MS.gene034249:CDS |
| GTTGTGTAAGATTGACTCCG+AGG | 0.676451 | 4.1:-88660523 | MS.gene034249:CDS |
| TTATACCTTGACCACCACAC+AGG | 0.686928 | 4.1:+88660473 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGATTCTAAAAAAAAATAA+TGG | + | chr4.1:88661203-88661222 | None:intergenic | 10.0% |
| !!! | TTTTGTTTATTTAATTTGAT+TGG | - | chr4.1:88660443-88660462 | MS.gene034249:intron | 10.0% |
| !!! | GTTGAATATGAATTTTAATA+AGG | - | chr4.1:88660357-88660376 | MS.gene034249:CDS | 15.0% |
| !!! | TTGTAATGTGTTTTTATTAT+TGG | + | chr4.1:88662238-88662257 | None:intergenic | 15.0% |
| !!! | TTTGTTGTATTAATTATTGT+TGG | - | chr4.1:88662402-88662421 | MS.gene034249:intron | 15.0% |
| !! | AACACATTACAAAAAATGAA+TGG | - | chr4.1:88662246-88662265 | MS.gene034249:intron | 20.0% |
| !! | ACACATTACAAAAAATGAAT+GGG | - | chr4.1:88662247-88662266 | MS.gene034249:intron | 20.0% |
| !! | TAAAAATAAGCTAATCCATA+CGG | - | chr4.1:88660940-88660959 | MS.gene034249:CDS | 20.0% |
| !! | TATTTACTTGTTTATGCATT+GGG | - | chr4.1:88662128-88662147 | MS.gene034249:intron | 20.0% |
| !! | TTATTTACTTGTTTATGCAT+TGG | - | chr4.1:88662127-88662146 | MS.gene034249:intron | 20.0% |
| !!! | AACAATTATGTCATGTTTTA+GGG | + | chr4.1:88661166-88661185 | None:intergenic | 20.0% |
| !!! | AACCATAATATCAAAGTTTT+TGG | + | chr4.1:88661503-88661522 | None:intergenic | 20.0% |
| !!! | AGATATGCTAATTAATTTTG+TGG | + | chr4.1:88662347-88662366 | None:intergenic | 20.0% |
| !!! | CAGAATATTGTTAATTTGAT+TGG | - | chr4.1:88660505-88660524 | MS.gene034249:CDS | 20.0% |
| !!! | GTAAAGAGACATAATTTTAT+TGG | - | chr4.1:88660470-88660489 | MS.gene034249:intron | 20.0% |
| !!! | TGATATTATGGTTATTTTTG+TGG | - | chr4.1:88661510-88661529 | MS.gene034249:intron | 20.0% |
| !!! | TTGCAATTTTTGATATTTGT+GGG | - | chr4.1:88661109-88661128 | MS.gene034249:CDS | 20.0% |
| !!! | TTTTCTTTTCTTTTTTCGAT+TGG | - | chr4.1:88662529-88662548 | MS.gene034249:intron | 20.0% |
| ! | AAAAATAAGCTAATCCATAC+GGG | - | chr4.1:88660941-88660960 | MS.gene034249:CDS | 25.0% |
| ! | AATTAACAATATTCTGCAGT+AGG | + | chr4.1:88660501-88660520 | None:intergenic | 25.0% |
| ! | AGTTCAATTCAAAGATAGTT+TGG | + | chr4.1:88662196-88662215 | None:intergenic | 25.0% |
| ! | CAAATTACACAAACAAAAGA+AGG | + | chr4.1:88661634-88661653 | None:intergenic | 25.0% |
| ! | CAAGCAAAATTAAAGAATGA+TGG | - | chr4.1:88662285-88662304 | MS.gene034249:intron | 25.0% |
| ! | CACCAAAAACTTTGATATTA+TGG | - | chr4.1:88661498-88661517 | MS.gene034249:intron | 25.0% |
| ! | CGCAAATCACAATATAAAAA+TGG | + | chr4.1:88661412-88661431 | None:intergenic | 25.0% |
| ! | TCATTTGTGAAACTGTTTAT+TGG | - | chr4.1:88660582-88660601 | MS.gene034249:intron | 25.0% |
| ! | TCTAAGTAACAATTCATCTA+TGG | - | chr4.1:88661715-88661734 | MS.gene034249:intron | 25.0% |
| !! | CAACAATTATGTCATGTTTT+AGG | + | chr4.1:88661167-88661186 | None:intergenic | 25.0% |
| !! | GTTGCAATTTTTGATATTTG+TGG | - | chr4.1:88661108-88661127 | MS.gene034249:CDS | 25.0% |
| !! | TAATTAATTTTGTGGTGTAG+TGG | + | chr4.1:88662339-88662358 | None:intergenic | 25.0% |
| !! | TAATTTGATTGGAGTATTAG+AGG | - | chr4.1:88660516-88660535 | MS.gene034249:CDS | 25.0% |
| !! | TTAACGGATATCACATTTAT+TGG | - | chr4.1:88662086-88662105 | MS.gene034249:intron | 25.0% |
| !! | TTTTGATATTTGTGGGTATA+CGG | - | chr4.1:88661116-88661135 | MS.gene034249:CDS | 25.0% |
| !!! | ACAATTATGTCATGTTTTAG+GGG | + | chr4.1:88661165-88661184 | None:intergenic | 25.0% |
| !!! | GTAAGTCTTCTGAAATTTAA+CGG | - | chr4.1:88662070-88662089 | MS.gene034249:intron | 25.0% |
| !!! | TTTTTATAAACTAGCTTGAC+AGG | + | chr4.1:88660783-88660802 | None:intergenic | 25.0% |
| AAAGTAATTGAGAAGAACAC+AGG | - | chr4.1:88661917-88661936 | MS.gene034249:intron | 30.0% | |
| AAATTTCAGAAGACTTACAC+CGG | + | chr4.1:88662068-88662087 | None:intergenic | 30.0% | |
| ATTACAAAAAATGAATGGGC+AGG | - | chr4.1:88662251-88662270 | MS.gene034249:intron | 30.0% | |
| CAAATAAGTCCAATTCAAAC+AGG | + | chr4.1:88660542-88660561 | None:intergenic | 30.0% | |
| CACCAAAAAAAACGACATAA+GGG | + | chr4.1:88660984-88661003 | None:intergenic | 30.0% | |
| CATGACAATGATTCTCTATA+AGG | - | chr4.1:88661588-88661607 | MS.gene034249:intron | 30.0% | |
| CTAAGTAGCAATTCTTACAT+GGG | - | chr4.1:88661330-88661349 | MS.gene034249:intron | 30.0% | |
| GACAATGCATAATATATGCA+AGG | + | chr4.1:88661030-88661049 | None:intergenic | 30.0% | |
| TCTAAGTAGCAATTCTTACA+TGG | - | chr4.1:88661329-88661348 | MS.gene034249:intron | 30.0% | |
| TTTGATATTTGTGGGTATAC+GGG | - | chr4.1:88661117-88661136 | MS.gene034249:CDS | 30.0% | |
| ! | TAAGAATTGCTACTTAGACA+CGG | + | chr4.1:88661327-88661346 | None:intergenic | 30.0% |
| !! | TCTTGTGTGGTTTGTTTATT+TGG | - | chr4.1:88661255-88661274 | MS.gene034249:intron | 30.0% |
| !!! | ATGGTTATTTTTGTGGTTGT+GGG | - | chr4.1:88661517-88661536 | MS.gene034249:intron | 30.0% |
| !!! | TATGGTTATTTTTGTGGTTG+TGG | - | chr4.1:88661516-88661535 | MS.gene034249:intron | 30.0% |
| ACCTGCTAAATAAGCTGTTT+AGG | - | chr4.1:88660691-88660710 | MS.gene034249:intron | 35.0% | |
| AGAAAATGTGGATAAATGGG+GGG | - | chr4.1:88661447-88661466 | MS.gene034249:intron | 35.0% | |
| ATAAGGGCTCTGTTTGAATA+AGG | + | chr4.1:88660968-88660987 | None:intergenic | 35.0% | |
| ATACAGAACAACACAAGACA+CGG | + | chr4.1:88661665-88661684 | None:intergenic | 35.0% | |
| CACATTCAACAGTTAAAACC+AGG | + | chr4.1:88662562-88662581 | None:intergenic | 35.0% | |
| CAGAAAATGTGGATAAATGG+GGG | - | chr4.1:88661446-88661465 | MS.gene034249:intron | 35.0% | |
| CATAATATATGCAAGGTCCA+GGG | + | chr4.1:88661023-88661042 | None:intergenic | 35.0% | |
| CCACCAAAAAAAACGACATA+AGG | + | chr4.1:88660985-88661004 | None:intergenic | 35.0% | |
| CCAGAAAATGTGGATAAATG+GGG | - | chr4.1:88661445-88661464 | MS.gene034249:intron | 35.0% | |
| CCTGCTAAATAAGCTGTTTA+GGG | - | chr4.1:88660692-88660711 | MS.gene034249:intron | 35.0% | |
| GCCAGAAAATGTGGATAAAT+GGG | - | chr4.1:88661444-88661463 | MS.gene034249:intron | 35.0% | |
| TAAGGGCTCTGTTTGAATAA+GGG | + | chr4.1:88660967-88660986 | None:intergenic | 35.0% | |
| TATGCATTGGGATACTTATC+AGG | - | chr4.1:88662140-88662159 | MS.gene034249:intron | 35.0% | |
| TATTAGAGGCCTGTTTGAAT+TGG | - | chr4.1:88660530-88660549 | MS.gene034249:intron | 35.0% | |
| TGACTATGTTAAACTCGTCA+AGG | - | chr4.1:88661976-88661995 | MS.gene034249:intron | 35.0% | |
| TTGACGAGTTTAACATAGTC+AGG | + | chr4.1:88661977-88661996 | None:intergenic | 35.0% | |
| TTGTCATGCAATGACGAAAT+AGG | + | chr4.1:88661576-88661595 | None:intergenic | 35.0% | |
| ! | AGTTTTCACGAGCAAATAGT+CGG | + | chr4.1:88660868-88660887 | None:intergenic | 35.0% |
| ! | CTTGTGTTGTTCTGTATGTT+TGG | - | chr4.1:88661668-88661687 | MS.gene034249:intron | 35.0% |
| ! | TTAATTTTGTGGTGTAGTGG+TGG | + | chr4.1:88662336-88662355 | None:intergenic | 35.0% |
| ! | TTCTCTGTTCAGGACATTTT+TGG | - | chr4.1:88661354-88661373 | MS.gene034249:intron | 35.0% |
| !! | CAATTACTTTTGCACCTTCA+TGG | + | chr4.1:88661907-88661926 | None:intergenic | 35.0% |
| !! | GATATTTTTGCTATGCAGTG+AGG | - | chr4.1:88661751-88661770 | MS.gene034249:intron | 35.0% |
| !!! | AGCCCTTATGTCGTTTTTTT+TGG | - | chr4.1:88660979-88660998 | MS.gene034249:CDS | 35.0% |
| !!! | CCTTATGTCGTTTTTTTTGG+TGG | - | chr4.1:88660982-88661001 | MS.gene034249:CDS | 35.0% |
| !!! | CTGGTTTTAACTGTTGAATG+TGG | - | chr4.1:88662560-88662579 | MS.gene034249:intron | 35.0% |
| !!! | TATGTCGTTTTTTTTGGTGG+TGG | - | chr4.1:88660985-88661004 | MS.gene034249:CDS | 35.0% |
| !!! | TGGTTATTTTTGTGGTTGTG+GGG | - | chr4.1:88661518-88661537 | MS.gene034249:intron | 35.0% |
| AAGGCAGTCATGATATCCAT+TGG | + | chr4.1:88661833-88661852 | None:intergenic | 40.0% | |
| CCCTAAACAGCTTATTTAGC+AGG | + | chr4.1:88660695-88660714 | None:intergenic | 40.0% | |
| CGCCAGAAAATGTGGATAAA+TGG | - | chr4.1:88661443-88661462 | MS.gene034249:intron | 40.0% | |
| CTTGATATCGCCAGAAAATG+TGG | - | chr4.1:88661435-88661454 | MS.gene034249:intron | 40.0% | |
| GCATAATATATGCAAGGTCC+AGG | + | chr4.1:88661024-88661043 | None:intergenic | 40.0% | |
| GTCAATCTTACACAACTGCA+AGG | + | chr4.1:88662434-88662453 | None:intergenic | 40.0% | |
| GTTGTTCTGTATGTTTGGTC+TGG | - | chr4.1:88661673-88661692 | MS.gene034249:intron | 40.0% | |
| TCTTATCTGTGCATCTTGTG+TGG | - | chr4.1:88661242-88661261 | MS.gene034249:intron | 40.0% | |
| TTACATGGGTTTCTCTGTTC+AGG | - | chr4.1:88661344-88661363 | MS.gene034249:intron | 40.0% | |
| ! | CCCCATTTATCCACATTTTC+TGG | + | chr4.1:88661448-88661467 | None:intergenic | 40.0% |
| ! | TAAGCTGTTTAGGGCTTGTT+TGG | - | chr4.1:88660701-88660720 | MS.gene034249:intron | 40.0% |
| ! | TTGTGTAAGATTGACTCCGA+GGG | - | chr4.1:88662439-88662458 | MS.gene034249:intron | 40.0% |
| !! | GCTTGTGTAGTTTGTTTGTC+TGG | - | chr4.1:88661283-88661302 | MS.gene034249:intron | 40.0% |
| !! | TTACTTTTGCACCTTCATGG+AGG | + | chr4.1:88661904-88661923 | None:intergenic | 40.0% |
| !! | TTTTCGATTGGTGTTTTGCC+TGG | - | chr4.1:88662541-88662560 | MS.gene034249:intron | 40.0% |
| ACTTGTGCTTAGGAAGTCAC+TGG | - | chr4.1:88661856-88661875 | MS.gene034249:intron | 45.0% | |
| CGAGTTTAACATAGTCAGGC+TGG | + | chr4.1:88661973-88661992 | None:intergenic | 45.0% | |
| CTTACACAACTGCAAGGAGA+AGG | + | chr4.1:88662428-88662447 | None:intergenic | 45.0% | |
| CTTAGGAAGTCACTGGCATA+TGG | - | chr4.1:88661863-88661882 | MS.gene034249:intron | 45.0% | |
| CTTCCTAAGCACAAGTTGCA+AGG | + | chr4.1:88661852-88661871 | None:intergenic | 45.0% | |
| GGAAAAGCTAGGAAGGTAAC+TGG | - | chr4.1:88662460-88662479 | MS.gene034249:intron | 45.0% | |
| GTGCTGCAGAACAACATTGT+AGG | + | chr4.1:88662618-88662637 | None:intergenic | 45.0% | |
| TGCGAAGACACTTGGAGAAT+GGG | - | chr4.1:88662042-88662061 | MS.gene034249:intron | 45.0% | |
| TGTTTGAATAAGGGCCCGTA+TGG | + | chr4.1:88660958-88660977 | None:intergenic | 45.0% | |
| TTAACTGTTGAATGTGGCCG+TGG | - | chr4.1:88662566-88662585 | MS.gene034249:intron | 45.0% | |
| TTATACCTTGACCACCACAC+AGG | + | chr4.1:88662491-88662510 | None:intergenic | 45.0% | |
| ! | GTTGTGTAAGATTGACTCCG+AGG | - | chr4.1:88662438-88662457 | MS.gene034249:intron | 45.0% |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | + | chr4.1:88661052-88661071 | None:intergenic | 45.0% |
| !! | TACCTTCCTAGCTTTTCCCT+CGG | + | chr4.1:88662458-88662477 | None:intergenic | 45.0% |
| !!! | GTTTTTTTTGGTGGTGGCCA+GGG | - | chr4.1:88660991-88661010 | MS.gene034249:CDS | 45.0% |
| AAGACACTTGGAGAATGGGC+CGG | - | chr4.1:88662046-88662065 | MS.gene034249:intron | 50.0% | |
| AGGAAGTCACTGGCATATGG+TGG | - | chr4.1:88661866-88661885 | MS.gene034249:intron | 50.0% | |
| CGGGATTCATTCTGCAGTTG+TGG | - | chr4.1:88661136-88661155 | MS.gene034249:CDS | 50.0% | |
| CTGCCTTGCAACTTGTGCTT+AGG | - | chr4.1:88661846-88661865 | MS.gene034249:intron | 50.0% | |
| GATGCAGCTGTTGCATGTTG+TGG | - | chr4.1:88661472-88661491 | MS.gene034249:intron | 50.0% | |
| GGAAGTCACTGGCATATGGT+GGG | - | chr4.1:88661867-88661886 | MS.gene034249:intron | 50.0% | |
| GGTGTAGTGGTGGTTCTTGT+TGG | + | chr4.1:88662326-88662345 | None:intergenic | 50.0% | |
| GTGCGAAGACACTTGGAGAA+TGG | - | chr4.1:88662041-88662060 | MS.gene034249:intron | 50.0% | |
| GTTCCTAGTGCGAAGACACT+TGG | - | chr4.1:88662034-88662053 | MS.gene034249:intron | 50.0% | |
| TCTCCAAGTGTCTTCGCACT+AGG | + | chr4.1:88662040-88662059 | None:intergenic | 50.0% | |
| TTGACTCCGAGGGAAAAGCT+AGG | - | chr4.1:88662449-88662468 | MS.gene034249:intron | 50.0% | |
| !! | ATGATATCCATTGGCTCGCC+TGG | + | chr4.1:88661824-88661843 | None:intergenic | 50.0% |
| !!! | CGTTTTTTTTGGTGGTGGCC+AGG | - | chr4.1:88660990-88661009 | MS.gene034249:CDS | 50.0% |
| AAGGTCCAGGGTTTGAACCC+TGG | + | chr4.1:88661011-88661030 | None:intergenic | 55.0% | |
| CCAACTGAGCTAAGCTCACG+AGG | - | chr4.1:88661054-88661073 | MS.gene034249:CDS | 55.0% | |
| CCTCCCCAAAATCCTGACCA+CGG | + | chr4.1:88662586-88662605 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | + | chr4.1:88661057-88661076 | None:intergenic | 55.0% | |
| CTCCGAGGGAAAAGCTAGGA+AGG | - | chr4.1:88662453-88662472 | MS.gene034249:intron | 55.0% | |
| TGGAATTCCAGGCGAGCCAA+TGG | - | chr4.1:88661814-88661833 | MS.gene034249:intron | 55.0% | |
| TGTTGAATGTGGCCGTGGTC+AGG | - | chr4.1:88662571-88662590 | MS.gene034249:intron | 55.0% | |
| ! | GTGGCCGTGGTCAGGATTTT+GGG | - | chr4.1:88662579-88662598 | MS.gene034249:intron | 55.0% |
| ! | TGGCCGTGGTCAGGATTTTG+GGG | - | chr4.1:88662580-88662599 | MS.gene034249:intron | 55.0% |
| ! | TGTGGCCGTGGTCAGGATTT+TGG | - | chr4.1:88662578-88662597 | MS.gene034249:intron | 55.0% |
| AACTGGCTGCTCCTGTGTGG+TGG | - | chr4.1:88662477-88662496 | MS.gene034249:intron | 60.0% | |
| CGCCTGGAATTCCAGCAGCA+GGG | + | chr4.1:88661808-88661827 | None:intergenic | 60.0% | |
| CTGCTCCTGTGTGGTGGTCA+AGG | - | chr4.1:88662483-88662502 | MS.gene034249:intron | 60.0% | |
| CTTGCACGTGGCCTCCATGA+AGG | - | chr4.1:88661890-88661909 | MS.gene034249:intron | 60.0% | |
| GCCTGGAATTCCAGCAGCAG+GGG | + | chr4.1:88661807-88661826 | None:intergenic | 60.0% | |
| GGTAACTGGCTGCTCCTGTG+TGG | - | chr4.1:88662474-88662493 | MS.gene034249:intron | 60.0% | |
| TCGCCTGGAATTCCAGCAGC+AGG | + | chr4.1:88661809-88661828 | None:intergenic | 60.0% | |
| TGGAATTCCAGCAGCAGGGG+CGG | + | chr4.1:88661804-88661823 | None:intergenic | 60.0% | |
| !! | CCGTGGTCAGGATTTTGGGG+AGG | - | chr4.1:88662583-88662602 | MS.gene034249:intron | 60.0% |
| !! | GCATATGGTGGGCTTGCACG+TGG | - | chr4.1:88661878-88661897 | MS.gene034249:intron | 60.0% |
| GCCCCTGCTGCTGGAATTCC+AGG | - | chr4.1:88661803-88661822 | MS.gene034249:intron | 65.0% | |
| GGTGGCCAGGGTTCAAACCC+TGG | - | chr4.1:88661003-88661022 | MS.gene034249:CDS | 65.0% | |
| CCAGCAGCAGGGGCGGCAAC+AGG | + | chr4.1:88661797-88661816 | None:intergenic | 75.0% | |
| CCTGTTGCCGCCCCTGCTGC+TGG | - | chr4.1:88661794-88661813 | MS.gene034249:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 88660331 | 88662652 | 88660331 | ID=MS.gene034249 |
| chr4.1 | mRNA | 88660331 | 88662652 | 88660331 | ID=MS.gene034249.t1;Parent=MS.gene034249 |
| chr4.1 | exon | 88662645 | 88662652 | 88662645 | ID=MS.gene034249.t1.exon1;Parent=MS.gene034249.t1 |
| chr4.1 | CDS | 88662645 | 88662652 | 88662645 | ID=cds.MS.gene034249.t1;Parent=MS.gene034249.t1 |
| chr4.1 | exon | 88660914 | 88661214 | 88660914 | ID=MS.gene034249.t1.exon2;Parent=MS.gene034249.t1 |
| chr4.1 | CDS | 88660914 | 88661214 | 88660914 | ID=cds.MS.gene034249.t1;Parent=MS.gene034249.t1 |
| chr4.1 | exon | 88660479 | 88660544 | 88660479 | ID=MS.gene034249.t1.exon3;Parent=MS.gene034249.t1 |
| chr4.1 | CDS | 88660479 | 88660544 | 88660479 | ID=cds.MS.gene034249.t1;Parent=MS.gene034249.t1 |
| chr4.1 | exon | 88660331 | 88660390 | 88660331 | ID=MS.gene034249.t1.exon4;Parent=MS.gene034249.t1 |
| chr4.1 | CDS | 88660331 | 88660390 | 88660331 | ID=cds.MS.gene034249.t1;Parent=MS.gene034249.t1 |
| Gene Sequence |
| Protein sequence |
