Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28384.t1 | XP_003630279.1 | 100 | 143 | 0 | 0 | 1 | 143 | 1 | 143 | 2.50E-73 | 284.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28384.t1 | Q9XHS0 | 72.5 | 142 | 39 | 0 | 1 | 142 | 1 | 142 | 2.4e-53 | 209.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28384.t1 | G7LE33 | 100.0 | 143 | 0 | 0 | 1 | 143 | 1 | 143 | 1.8e-73 | 284.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene28384 | MS.gene000610 | PPI |
| MS.gene03201 | MS.gene28384 | PPI |
| MS.gene28384 | MS.gene073888 | PPI |
| MS.gene28384 | MS.gene02572 | PPI |
| MS.gene70215 | MS.gene28384 | PPI |
| MS.gene28384 | MS.gene053224 | PPI |
| MS.gene02807 | MS.gene28384 | PPI |
| MS.gene09780 | MS.gene28384 | PPI |
| MS.gene013786 | MS.gene28384 | PPI |
| MS.gene28384 | MS.gene09779 | PPI |
| MS.gene28384 | MS.gene65180 | PPI |
| MS.gene57391 | MS.gene28384 | PPI |
| MS.gene28384 | MS.gene025830 | PPI |
| MS.gene28384 | MS.gene034249 | PPI |
| MS.gene46264 | MS.gene28384 | PPI |
| MS.gene030614 | MS.gene28384 | PPI |
| MS.gene09762 | MS.gene28384 | PPI |
| MS.gene28384 | MS.gene015411 | PPI |
| MS.gene28384 | MS.gene053443 | PPI |
| MS.gene53517 | MS.gene28384 | PPI |
| MS.gene28384 | MS.gene70215 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28384.t1 | MTR_8g093770 | 100.000 | 143 | 0 | 0 | 1 | 143 | 1 | 143 | 1.51e-102 | 290 |
| MS.gene28384.t1 | MTR_5g012890 | 96.000 | 125 | 5 | 0 | 19 | 143 | 18 | 142 | 1.01e-86 | 249 |
| MS.gene28384.t1 | MTR_4g006830 | 88.889 | 144 | 15 | 1 | 1 | 143 | 1 | 144 | 2.91e-83 | 241 |
| MS.gene28384.t1 | MTR_5g012890 | 91.111 | 90 | 8 | 0 | 19 | 108 | 18 | 107 | 1.38e-56 | 172 |
| MS.gene28384.t1 | MTR_4g073510 | 66.667 | 54 | 17 | 1 | 1 | 53 | 1 | 54 | 3.27e-15 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28384.t1 | AT2G32060 | 76.000 | 125 | 29 | 1 | 19 | 143 | 21 | 144 | 1.29e-67 | 201 |
| MS.gene28384.t1 | AT2G32060 | 76.000 | 125 | 29 | 1 | 19 | 143 | 21 | 144 | 1.29e-67 | 201 |
| MS.gene28384.t1 | AT2G32060 | 76.000 | 125 | 29 | 1 | 19 | 143 | 21 | 144 | 1.29e-67 | 201 |
| MS.gene28384.t1 | AT1G15930 | 74.400 | 125 | 31 | 1 | 19 | 143 | 21 | 144 | 3.49e-64 | 192 |
| MS.gene28384.t1 | AT1G15930 | 74.400 | 125 | 31 | 1 | 19 | 143 | 21 | 144 | 3.49e-64 | 192 |
Find 37 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACCAACTTGACGTAATC+AGG | 0.299059 | 4.4:+9281203 | None:intergenic |
| TCTCCAAGGGTCTTTGCATT+TGG | 0.313809 | 4.4:+9281140 | None:intergenic |
| GTTGCTGCAGCTGGAATTCC+AGG | 0.331115 | 4.4:-9281374 | MS.gene28384:CDS |
| AATCAACTTGCAATTATGTC+TGG | 0.359633 | 4.4:-9281778 | None:intergenic |
| ATTCCAGCTGCAGCAACAAC+TGG | 0.406602 | 4.4:+9281380 | None:intergenic |
| TGCAAAGACCCTTGGAGAAT+GGG | 0.412944 | 4.4:-9281135 | MS.gene28384:CDS |
| ATAATGTCCATTGGCTCCCC+TGG | 0.424358 | 4.4:+9281356 | None:intergenic |
| GAGCCAGTTGTTGCTGCAGC+TGG | 0.425162 | 4.4:-9281383 | MS.gene28384:CDS |
| GACACTGTGTTCAGCACAAA+GGG | 0.447539 | 4.4:+9281178 | None:intergenic |
| ATGCAAAGACCCTTGGAGAA+TGG | 0.451113 | 4.4:-9281136 | MS.gene28384:CDS |
| TTGAGAAAGTCGCGGGCATA+TGG | 0.459751 | 4.4:-9281314 | MS.gene28384:CDS |
| GGAAAAGCTAGGAAGGTAAC+TGG | 0.463250 | 4.4:-9280397 | MS.gene28384:CDS |
| TTGCTCCTGTGTGGTTGTCA+AGG | 0.525394 | 4.4:-9280374 | MS.gene28384:intron |
| GTTCCAAATGCAAAGACCCT+TGG | 0.532260 | 4.4:-9281143 | MS.gene28384:CDS |
| TTGCTGCAGCTGGAATTCCA+GGG | 0.537879 | 4.4:-9281373 | MS.gene28384:CDS |
| ATCAACTTGCAATTATGTCT+GGG | 0.539041 | 4.4:-9281777 | None:intergenic |
| TTGTGCAAAATTGATTCAGA+AGG | 0.565495 | 4.4:-9280418 | MS.gene28384:CDS |
| GCGACTTTCTCAATACAAGC+TGG | 0.568533 | 4.4:+9281324 | None:intergenic |
| TGCTGCAGCTGGAATTCCAG+GGG | 0.575795 | 4.4:-9281372 | MS.gene28384:CDS |
| TTGATTCAGAAGGAAAAGCT+AGG | 0.578774 | 4.4:-9280408 | MS.gene28384:CDS |
| ACAGCTCTGTGTTCTTGCTG+AGG | 0.587565 | 4.4:-9281237 | MS.gene28384:CDS |
| CCAACCTGATTACGTCAAGT+TGG | 0.591510 | 4.4:-9281207 | MS.gene28384:CDS |
| TTACACCAGCCCATTCTCCA+AGG | 0.592149 | 4.4:+9281126 | None:intergenic |
| TTCAGAAGGAAAAGCTAGGA+AGG | 0.596975 | 4.4:-9280404 | MS.gene28384:CDS |
| TGGAATTCCAGGGGAGCCAA+TGG | 0.597407 | 4.4:-9281363 | MS.gene28384:CDS |
| GCTTGTATTGAGAAAGTCGC+GGG | 0.598261 | 4.4:-9281321 | MS.gene28384:CDS |
| ACAGCGGTCATAATGTCCAT+TGG | 0.598980 | 4.4:+9281347 | None:intergenic |
| CCAACTTGACGTAATCAGGT+TGG | 0.614249 | 4.4:+9281207 | None:intergenic |
| AGAAAGTCGCGGGCATATGG+TGG | 0.615038 | 4.4:-9281311 | MS.gene28384:CDS |
| GCATATGGTGGTCTTGCACG+AGG | 0.615278 | 4.4:-9281299 | MS.gene28384:CDS |
| AAGACCCTTGGAGAATGGGC+TGG | 0.615483 | 4.4:-9281131 | MS.gene28384:CDS |
| TGACACTGTGTTCAGCACAA+AGG | 0.628583 | 4.4:+9281177 | None:intergenic |
| GGTAACTGGTTGCTCCTGTG+TGG | 0.641819 | 4.4:-9280383 | MS.gene28384:CDS |
| TACACCAGCCCATTCTCCAA+GGG | 0.643748 | 4.4:+9281127 | None:intergenic |
| ACATACCTTGACAACCACAC+AGG | 0.682837 | 4.4:+9280369 | None:intergenic |
| TCTCAATACAAGCTGGACAG+CGG | 0.712950 | 4.4:+9281331 | None:intergenic |
| AGCTTGTATTGAGAAAGTCG+CGG | 0.717989 | 4.4:-9281322 | MS.gene28384:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAACTTCTTAATAATTTA+AGG | + | chr4.4:9281482-9281501 | None:intergenic | 10.0% |
| !! | AAATATATAATTGAGAATTG+TGG | + | chr4.4:9280951-9280970 | None:intergenic | 15.0% |
| !!! | AATTACTTTAAAATAAGTGT+GGG | - | chr4.4:9280986-9281005 | MS.gene28384:intron | 15.0% |
| !!! | TTAACTATTTTCATTTTTGT+AGG | - | chr4.4:9281704-9281723 | MS.gene28384:intron | 15.0% |
| !! | TTAATCTAGGTTTATAGTAA+TGG | + | chr4.4:9280902-9280921 | None:intergenic | 20.0% |
| !! | TTATTAAGAAGTTATTGTCT+TGG | - | chr4.4:9281486-9281505 | MS.gene28384:intron | 20.0% |
| !!! | GAATTACTTTAAAATAAGTG+TGG | - | chr4.4:9280985-9281004 | MS.gene28384:intron | 20.0% |
| !!! | TTTTCATTTTTGTAGGATTT+CGG | - | chr4.4:9281711-9281730 | MS.gene28384:intron | 20.0% |
| ! | AGGTTTCATTAATTCCTTAT+TGG | + | chr4.4:9281067-9281086 | None:intergenic | 25.0% |
| ! | AGTACTACTATTGAAATAGT+TGG | - | chr4.4:9280405-9280424 | MS.gene28384:CDS | 25.0% |
| ! | ATAGAGAAGCAATTATTTGT+TGG | + | chr4.4:9281121-9281140 | None:intergenic | 25.0% |
| ! | GGCAAAGATTAAAATAAATG+AGG | + | chr4.4:9281461-9281480 | None:intergenic | 25.0% |
| !! | TGTTGTTTAGTTATTGTTTC+TGG | - | chr4.4:9281278-9281297 | MS.gene28384:CDS | 25.0% |
| !!! | ACTATTTTTTGTGTCTTGAA+TGG | - | chr4.4:9280510-9280529 | MS.gene28384:intron | 25.0% |
| !!! | CTATTTTTTGTGTCTTGAAT+GGG | - | chr4.4:9280511-9280530 | MS.gene28384:intron | 25.0% |
| AATTGAGAATTGTGGTCAAA+TGG | + | chr4.4:9280943-9280962 | None:intergenic | 30.0% | |
| CAGAGTACAAGATAAAACAA+AGG | + | chr4.4:9281354-9281373 | None:intergenic | 30.0% | |
| TGGATTTCTTAGACAACAAA+AGG | + | chr4.4:9281101-9281120 | None:intergenic | 30.0% | |
| TTTCTTAGACAACAAAAGGT+TGG | + | chr4.4:9281097-9281116 | None:intergenic | 30.0% | |
| ! | CTAGGTTTATAGTAATGGAA+GGG | + | chr4.4:9280897-9280916 | None:intergenic | 30.0% |
| ! | TCATCTGGAATAGAAATGTT+TGG | - | chr4.4:9281651-9281670 | MS.gene28384:intron | 30.0% |
| ! | TCTAGGTTTATAGTAATGGA+AGG | + | chr4.4:9280898-9280917 | None:intergenic | 30.0% |
| ! | TGTGAGATTCTACTTGTTAA+TGG | - | chr4.4:9280269-9280288 | MS.gene28384:CDS | 30.0% |
| ! | TTGTGCAAAATTGATTCAGA+AGG | - | chr4.4:9281576-9281595 | MS.gene28384:intron | 30.0% |
| !! | ACAAGGAAATGGATTAATCT+AGG | + | chr4.4:9280915-9280934 | None:intergenic | 30.0% |
| AAATGGATGTCACAAGGAAA+TGG | + | chr4.4:9280926-9280945 | None:intergenic | 35.0% | |
| ACAAGTAGAATCTCACAAAC+AGG | + | chr4.4:9280266-9280285 | None:intergenic | 35.0% | |
| ACTTCTTATAGTTACTACCG+AGG | + | chr4.4:9280448-9280467 | None:intergenic | 35.0% | |
| AGTTAAGCATACGTAAACAG+AGG | + | chr4.4:9281690-9281709 | None:intergenic | 35.0% | |
| CTTCTTATAGTTACTACCGA+GGG | + | chr4.4:9280447-9280466 | None:intergenic | 35.0% | |
| TCATTTCATGCATCACAGTT+AGG | + | chr4.4:9281165-9281184 | None:intergenic | 35.0% | |
| TCCTCCAATCCATAGAAATA+GGG | - | chr4.4:9281204-9281223 | MS.gene28384:CDS | 35.0% | |
| TTGATTCAGAAGGAAAAGCT+AGG | - | chr4.4:9281586-9281605 | MS.gene28384:intron | 35.0% | |
| ! | AATTTTGCACAACTGCATGA+AGG | + | chr4.4:9281568-9281587 | None:intergenic | 35.0% |
| ! | CATTTTCTTCTTCAGAGAAG+AGG | - | chr4.4:9280574-9280593 | MS.gene28384:intron | 35.0% |
| ! | GTCAAGGTATGTTTTTCATC+TGG | - | chr4.4:9281636-9281655 | MS.gene28384:intron | 35.0% |
| !! | ATTGTTTCTGGTGTATTCCT+TGG | - | chr4.4:9281290-9281309 | MS.gene28384:CDS | 35.0% |
| !! | TGTACCCTATTTCTATGGAT+TGG | + | chr4.4:9281211-9281230 | None:intergenic | 35.0% |
| !! | TTGTTTCTGGTGTATTCCTT+GGG | - | chr4.4:9281291-9281310 | MS.gene28384:CDS | 35.0% |
| AAATCCTGACCCTAATCATG+AGG | - | chr4.4:9281037-9281056 | MS.gene28384:intron | 40.0% | |
| AATCCTGACCCTAATCATGA+GGG | - | chr4.4:9281038-9281057 | MS.gene28384:intron | 40.0% | |
| AGAAAAACAAAATCACCCCC+AGG | + | chr4.4:9281382-9281401 | None:intergenic | 40.0% | |
| AGCTTGTATTGAGAAAGTCG+CGG | - | chr4.4:9280672-9280691 | MS.gene28384:intron | 40.0% | |
| CTCCTCCAATCCATAGAAAT+AGG | - | chr4.4:9281203-9281222 | MS.gene28384:CDS | 40.0% | |
| GATTTGCACCATGATGTTGA+GGG | + | chr4.4:9281022-9281041 | None:intergenic | 40.0% | |
| TAACATCTCCCTCAACATCA+TGG | - | chr4.4:9281011-9281030 | MS.gene28384:intron | 40.0% | |
| TACAACCCTTGAATGTCAAG+CGG | - | chr4.4:9281227-9281246 | MS.gene28384:CDS | 40.0% | |
| TTCACCAACTTGACGTAATC+AGG | + | chr4.4:9280794-9280813 | None:intergenic | 40.0% | |
| TTCAGAAGGAAAAGCTAGGA+AGG | - | chr4.4:9281590-9281609 | MS.gene28384:intron | 40.0% | |
| TTCAGAGAGGATACAGAGTA+GGG | + | chr4.4:9281430-9281449 | None:intergenic | 40.0% | |
| TTTCATGCATCACAGTTAGG+AGG | + | chr4.4:9281162-9281181 | None:intergenic | 40.0% | |
| ! | AACAAAAGGTTGGTCACAAG+AGG | + | chr4.4:9281087-9281106 | None:intergenic | 40.0% |
| ! | ATTTTTGTAGGATTTCGGCG+AGG | - | chr4.4:9281716-9281735 | MS.gene28384:intron | 40.0% |
| !! | ACCCTATTTCTATGGATTGG+AGG | + | chr4.4:9281208-9281227 | None:intergenic | 40.0% |
| !! | AGGGTTGTACCCTATTTCTA+TGG | + | chr4.4:9281216-9281235 | None:intergenic | 40.0% |
| ACAGCGGTCATAATGTCCAT+TGG | + | chr4.4:9280650-9280669 | None:intergenic | 45.0% | |
| ACATACCTTGACAACCACAC+AGG | + | chr4.4:9281628-9281647 | None:intergenic | 45.0% | |
| ATCCTGACCCTAATCATGAG+GGG | - | chr4.4:9281039-9281058 | MS.gene28384:intron | 45.0% | |
| ATCTGATAGCCAATAGCCCT+CGG | - | chr4.4:9280428-9280447 | MS.gene28384:intron | 45.0% | |
| ATGCAAAGACCCTTGGAGAA+TGG | - | chr4.4:9280858-9280877 | MS.gene28384:intron | 45.0% | |
| CCAACCTGATTACGTCAAGT+TGG | - | chr4.4:9280787-9280806 | MS.gene28384:intron | 45.0% | |
| CCAACTTGACGTAATCAGGT+TGG | + | chr4.4:9280790-9280809 | None:intergenic | 45.0% | |
| CTGGTGTATTCCTTGGGTTT+GGG | - | chr4.4:9281297-9281316 | MS.gene28384:CDS | 45.0% | |
| GACACTGTGTTCAGCACAAA+GGG | + | chr4.4:9280819-9280838 | None:intergenic | 45.0% | |
| GCGACTTTCTCAATACAAGC+TGG | + | chr4.4:9280673-9280692 | None:intergenic | 45.0% | |
| GCTTGTATTGAGAAAGTCGC+GGG | - | chr4.4:9280673-9280692 | MS.gene28384:intron | 45.0% | |
| GGAAAAGCTAGGAAGGTAAC+TGG | - | chr4.4:9281597-9281616 | MS.gene28384:intron | 45.0% | |
| GGATTTGCACCATGATGTTG+AGG | + | chr4.4:9281023-9281042 | None:intergenic | 45.0% | |
| GTGGTCAAATGGATGTCACA+AGG | + | chr4.4:9280932-9280951 | None:intergenic | 45.0% | |
| GTTCAGAGAGGATACAGAGT+AGG | + | chr4.4:9281431-9281450 | None:intergenic | 45.0% | |
| GTTCCAAATGCAAAGACCCT+TGG | - | chr4.4:9280851-9280870 | MS.gene28384:intron | 45.0% | |
| TAGTTACTACCGAGGGCTAT+TGG | + | chr4.4:9280440-9280459 | None:intergenic | 45.0% | |
| TCTCAATACAAGCTGGACAG+CGG | + | chr4.4:9280666-9280685 | None:intergenic | 45.0% | |
| TCTCCAAGGGTCTTTGCATT+TGG | + | chr4.4:9280857-9280876 | None:intergenic | 45.0% | |
| TCTGGTGTATTCCTTGGGTT+TGG | - | chr4.4:9281296-9281315 | MS.gene28384:CDS | 45.0% | |
| TGACACTGTGTTCAGCACAA+AGG | + | chr4.4:9280820-9280839 | None:intergenic | 45.0% | |
| TGAGGTTACAGAGTTCAGAG+AGG | + | chr4.4:9281443-9281462 | None:intergenic | 45.0% | |
| TGCAAAGACCCTTGGAGAAT+GGG | - | chr4.4:9280859-9280878 | MS.gene28384:intron | 45.0% | |
| TGGTGTATTCCTTGGGTTTG+GGG | - | chr4.4:9281298-9281317 | MS.gene28384:CDS | 45.0% | |
| AACCCTTGAATGTCAAGCGG+TGG | - | chr4.4:9281230-9281249 | MS.gene28384:CDS | 50.0% | |
| ACAGCTCTGTGTTCTTGCTG+AGG | - | chr4.4:9280757-9280776 | MS.gene28384:intron | 50.0% | |
| ATCTTGTACTCTGCTGCTCC+TGG | - | chr4.4:9281361-9281380 | MS.gene28384:CDS | 50.0% | |
| ATTCCAGCTGCAGCAACAAC+TGG | + | chr4.4:9280617-9280636 | None:intergenic | 50.0% | |
| ATTGGCGCCCCTCATGATTA+GGG | + | chr4.4:9281049-9281068 | None:intergenic | 50.0% | |
| GTCCACCGCTTGACATTCAA+GGG | + | chr4.4:9281235-9281254 | None:intergenic | 50.0% | |
| TACACCAGCCCATTCTCCAA+GGG | + | chr4.4:9280870-9280889 | None:intergenic | 50.0% | |
| TATTGGCGCCCCTCATGATT+AGG | + | chr4.4:9281050-9281069 | None:intergenic | 50.0% | |
| TCTTGTACTCTGCTGCTCCT+GGG | - | chr4.4:9281362-9281381 | MS.gene28384:CDS | 50.0% | |
| TGTATTCCTTGGGTTTGGGG+AGG | - | chr4.4:9281301-9281320 | MS.gene28384:CDS | 50.0% | |
| TGTCCACCGCTTGACATTCA+AGG | + | chr4.4:9281236-9281255 | None:intergenic | 50.0% | |
| TTACACCAGCCCATTCTCCA+AGG | + | chr4.4:9280871-9280890 | None:intergenic | 50.0% | |
| TTGAGAAAGTCGCGGGCATA+TGG | - | chr4.4:9280680-9280699 | MS.gene28384:intron | 50.0% | |
| TTGCTCCTGTGTGGTTGTCA+AGG | - | chr4.4:9281620-9281639 | MS.gene28384:intron | 50.0% | |
| TTGCTGCAGCTGGAATTCCA+GGG | - | chr4.4:9280621-9280640 | MS.gene28384:intron | 50.0% | |
| !! | AATCATGAGGGGCGCCAATA+AGG | - | chr4.4:9281050-9281069 | MS.gene28384:intron | 50.0% |
| !! | ATAATGTCCATTGGCTCCCC+TGG | + | chr4.4:9280641-9280660 | None:intergenic | 50.0% |
| AAGACCCTTGGAGAATGGGC+TGG | - | chr4.4:9280863-9280882 | MS.gene28384:intron | 55.0% | |
| AGAAAGTCGCGGGCATATGG+TGG | - | chr4.4:9280683-9280702 | MS.gene28384:intron | 55.0% | |
| CTTGTACTCTGCTGCTCCTG+GGG | - | chr4.4:9281363-9281382 | MS.gene28384:CDS | 55.0% | |
| GGTAACTGGTTGCTCCTGTG+TGG | - | chr4.4:9281611-9281630 | MS.gene28384:intron | 55.0% | |
| GTTGCTGCAGCTGGAATTCC+AGG | - | chr4.4:9280620-9280639 | MS.gene28384:intron | 55.0% | |
| TGCTGCAGCTGGAATTCCAG+GGG | - | chr4.4:9280622-9280641 | MS.gene28384:intron | 55.0% | |
| TGGAATTCCAGGGGAGCCAA+TGG | - | chr4.4:9280631-9280650 | MS.gene28384:intron | 55.0% | |
| TTGTACTCTGCTGCTCCTGG+GGG | - | chr4.4:9281364-9281383 | MS.gene28384:CDS | 55.0% | |
| ! | GCATATGGTGGTCTTGCACG+AGG | - | chr4.4:9280695-9280714 | MS.gene28384:intron | 55.0% |
| AACCAGCCTCCCCAAACCCA+AGG | + | chr4.4:9281310-9281329 | None:intergenic | 60.0% | |
| CGCCCCTCATGATTAGGGTC+AGG | + | chr4.4:9281044-9281063 | None:intergenic | 60.0% | |
| GAGCCAGTTGTTGCTGCAGC+TGG | - | chr4.4:9280611-9280630 | MS.gene28384:intron | 60.0% | |
| TTCCTTGGGTTTGGGGAGGC+TGG | - | chr4.4:9281305-9281324 | MS.gene28384:CDS | 60.0% | |
| ! | TGGGTTTGGGGAGGCTGGTT+TGG | - | chr4.4:9281310-9281329 | MS.gene28384:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 9280231 | 9281785 | 9280231 | ID=MS.gene28384 |
| chr4.4 | mRNA | 9280231 | 9281785 | 9280231 | ID=MS.gene28384.t1;Parent=MS.gene28384 |
| chr4.4 | exon | 9281778 | 9281785 | 9281778 | ID=MS.gene28384.t1.exon1;Parent=MS.gene28384.t1 |
| chr4.4 | CDS | 9281778 | 9281785 | 9281778 | ID=cds.MS.gene28384.t1;Parent=MS.gene28384.t1 |
| chr4.4 | exon | 9281130 | 9281427 | 9281130 | ID=MS.gene28384.t1.exon2;Parent=MS.gene28384.t1 |
| chr4.4 | CDS | 9281130 | 9281427 | 9281130 | ID=cds.MS.gene28384.t1;Parent=MS.gene28384.t1 |
| chr4.4 | exon | 9280375 | 9280440 | 9280375 | ID=MS.gene28384.t1.exon3;Parent=MS.gene28384.t1 |
| chr4.4 | CDS | 9280375 | 9280440 | 9280375 | ID=cds.MS.gene28384.t1;Parent=MS.gene28384.t1 |
| chr4.4 | exon | 9280231 | 9280290 | 9280231 | ID=MS.gene28384.t1.exon4;Parent=MS.gene28384.t1 |
| chr4.4 | CDS | 9280231 | 9280290 | 9280231 | ID=cds.MS.gene28384.t1;Parent=MS.gene28384.t1 |
| Gene Sequence |
| Protein sequence |
