Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09779.t1 | XP_003611335.1 | 99.3 | 134 | 1 | 0 | 28 | 161 | 5 | 138 | 2.70E-68 | 268.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09779.t1 | Q9XHS0 | 75.4 | 138 | 31 | 2 | 27 | 161 | 2 | 139 | 2.0e-51 | 203.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09779.t1 | G7JXD6 | 99.3 | 134 | 1 | 0 | 28 | 161 | 5 | 138 | 1.9e-68 | 268.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049361 | MS.gene09779 | 0.819071 | 1.41E-52 | -1.69E-46 |
| MS.gene050134 | MS.gene09779 | 0.873392 | 1.52E-67 | -1.69E-46 |
| MS.gene050791 | MS.gene09779 | 0.839479 | 1.55E-57 | -1.69E-46 |
| MS.gene050912 | MS.gene09779 | 0.828368 | 9.34E-55 | -1.69E-46 |
| MS.gene051984 | MS.gene09779 | 0.83488 | 2.32E-56 | -1.69E-46 |
| MS.gene052664 | MS.gene09779 | 0.844217 | 8.67E-59 | -1.69E-46 |
| MS.gene052666 | MS.gene09779 | 0.803151 | 4.00E-49 | -1.69E-46 |
| MS.gene053224 | MS.gene09779 | 0.891791 | 2.88E-74 | -1.69E-46 |
| MS.gene057272 | MS.gene09779 | 0.814186 | 1.75E-51 | -1.69E-46 |
| MS.gene057641 | MS.gene09779 | 0.830967 | 2.18E-55 | -1.69E-46 |
| MS.gene057643 | MS.gene09779 | 0.872699 | 2.60E-67 | -1.69E-46 |
| MS.gene060483 | MS.gene09779 | 0.834898 | 2.30E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene46264 | MS.gene09779 | PPI |
| MS.gene09779 | MS.gene053224 | PPI |
| MS.gene015411 | MS.gene09779 | PPI |
| MS.gene030614 | MS.gene09779 | PPI |
| MS.gene09762 | MS.gene09779 | PPI |
| MS.gene65180 | MS.gene09779 | PPI |
| MS.gene09779 | MS.gene025830 | PPI |
| MS.gene53517 | MS.gene09779 | PPI |
| MS.gene000610 | MS.gene09779 | PPI |
| MS.gene03201 | MS.gene09779 | PPI |
| MS.gene70215 | MS.gene09779 | PPI |
| MS.gene28384 | MS.gene09779 | PPI |
| MS.gene09779 | MS.gene034249 | PPI |
| MS.gene02807 | MS.gene09779 | PPI |
| MS.gene09779 | MS.gene073888 | PPI |
| MS.gene09779 | MS.gene053443 | PPI |
| MS.gene09780 | MS.gene09779 | PPI |
| MS.gene013786 | MS.gene09779 | PPI |
| MS.gene09779 | MS.gene000610 | PPI |
| MS.gene57391 | MS.gene09779 | PPI |
| MS.gene02572 | MS.gene09779 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09779.t1 | MTR_5g012890 | 99.254 | 134 | 1 | 0 | 28 | 161 | 5 | 138 | 1.92e-94 | 270 |
| MS.gene09779.t1 | MTR_8g093770 | 95.082 | 122 | 6 | 0 | 40 | 161 | 18 | 139 | 2.78e-83 | 241 |
| MS.gene09779.t1 | MTR_4g006830 | 95.082 | 122 | 6 | 0 | 40 | 161 | 19 | 140 | 9.29e-83 | 240 |
| MS.gene09779.t1 | MTR_5g012890 | 96.117 | 103 | 4 | 0 | 28 | 130 | 5 | 107 | 4.08e-67 | 199 |
| MS.gene09779.t1 | MTR_4g073510 | 70.833 | 48 | 12 | 1 | 30 | 75 | 7 | 54 | 1.53e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09779.t1 | AT2G32060 | 76.033 | 121 | 28 | 1 | 41 | 161 | 21 | 140 | 5.73e-65 | 195 |
| MS.gene09779.t1 | AT2G32060 | 76.033 | 121 | 28 | 1 | 41 | 161 | 21 | 140 | 5.73e-65 | 195 |
| MS.gene09779.t1 | AT2G32060 | 76.033 | 121 | 28 | 1 | 41 | 161 | 21 | 140 | 5.73e-65 | 195 |
| MS.gene09779.t1 | AT1G15930 | 76.860 | 121 | 27 | 1 | 41 | 161 | 21 | 140 | 4.19e-63 | 191 |
| MS.gene09779.t1 | AT1G15930 | 76.860 | 121 | 27 | 1 | 41 | 161 | 21 | 140 | 4.19e-63 | 191 |
Find 42 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACCAATTTGACATAATC+AGG | 0.268051 | 5.3:-6039595 | None:intergenic |
| GTTGTTGCTGCTGCAATTCC+AGG | 0.269519 | 5.3:+6039424 | MS.gene09779:CDS |
| GATGCTCTTGTGTGGTTGTC+AGG | 0.354575 | 5.3:+6039914 | MS.gene09779:CDS |
| ACCAGCTGGATGCGATTTGC+AGG | 0.362694 | 5.3:-6038428 | None:intergenic |
| ATGCTGCAAAACAACATTGT+AGG | 0.363171 | 5.3:-6040050 | None:intergenic |
| CATAAGCACGAGACTTTCTA+AGG | 0.363450 | 5.3:-6039483 | None:intergenic |
| CCAACCTGATTATGTCAAAT+TGG | 0.373462 | 5.3:+6039591 | MS.gene09779:CDS |
| CTTAGAAAGTCTCGTGCTTA+TGG | 0.383982 | 5.3:+6039484 | MS.gene09779:CDS |
| ATCAGGTTGGTCACAATCTT+CGG | 0.412966 | 5.3:-6039578 | None:intergenic |
| ATGATGTCCATTGGCTCGCC+TGG | 0.437864 | 5.3:-6039442 | None:intergenic |
| TTGCAGGAAGGCGGAGATAG+AGG | 0.453615 | 5.3:-6038412 | None:intergenic |
| TCTCCAAGGGTCTTTGCACT+TGG | 0.459795 | 5.3:-6039658 | None:intergenic |
| GGAATTGCAGCAGCAACAAC+AGG | 0.463311 | 5.3:-6039421 | None:intergenic |
| GGTAAAGCTAGGAAGGTTAC+CGG | 0.476827 | 5.3:+6039892 | MS.gene09779:CDS |
| AACATTGTGCTCTGCGCAGA+GGG | 0.503587 | 5.3:-6039620 | None:intergenic |
| CTGAAGCAACTCTATGCAAT+GGG | 0.504406 | 5.3:+6037600 | None:intergenic |
| CAGAGAGGGTTTCAATTCGA+TGG | 0.508374 | 5.3:-6038387 | None:intergenic |
| GACAACCACACAAGAGCATC+CGG | 0.522597 | 5.3:-6039911 | None:intergenic |
| TCCTGCAAATCGCATCCAGC+TGG | 0.522745 | 5.3:+6038427 | MS.gene09779:CDS |
| TTACGCCAGCCCACTCTCCA+AGG | 0.529322 | 5.3:-6039672 | None:intergenic |
| CCAATTTGACATAATCAGGT+TGG | 0.530247 | 5.3:-6039591 | None:intergenic |
| TGCAAAGACCCTTGGAGAGT+GGG | 0.530356 | 5.3:+6039663 | MS.gene09779:CDS |
| GTTCCAAGTGCAAAGACCCT+TGG | 0.537039 | 5.3:+6039655 | MS.gene09779:CDS |
| AAGACCCTTGGAGAGTGGGC+TGG | 0.538691 | 5.3:+6039667 | MS.gene09779:CDS |
| TTGATTCAGAAGGTAAAGCT+AGG | 0.543764 | 5.3:+6039881 | MS.gene09779:CDS |
| TTCAGAAGGTAAAGCTAGGA+AGG | 0.557714 | 5.3:+6039885 | MS.gene09779:CDS |
| GCTGGATGCGATTTGCAGGA+AGG | 0.568086 | 5.3:-6038424 | None:intergenic |
| TGCAATTCCAGGCGAGCCAA+TGG | 0.568250 | 5.3:+6039435 | MS.gene09779:CDS |
| GTGCAAAGACCCTTGGAGAG+TGG | 0.569975 | 5.3:+6039662 | MS.gene09779:CDS |
| GCTGAAGCAACTCTATGCAA+TGG | 0.578230 | 5.3:+6037599 | None:intergenic |
| ATGCTCTTGTGTGGTTGTCA+GGG | 0.586706 | 5.3:+6039915 | MS.gene09779:CDS |
| AAAGCAGTCATGATGTCCAT+TGG | 0.589394 | 5.3:-6039451 | None:intergenic |
| CGGAGATAGAGGCACAGAGA+GGG | 0.597269 | 5.3:-6038401 | None:intergenic |
| CTTGCACGAGGTCTTCATGA+AGG | 0.605005 | 5.3:+6039511 | MS.gene09779:CDS |
| AGAAAGTCTCGTGCTTATGG+TGG | 0.620799 | 5.3:+6039487 | MS.gene09779:CDS |
| TTGTGCAAGATTGATTCAGA+AGG | 0.623879 | 5.3:+6039871 | MS.gene09779:CDS |
| TACGCCAGCCCACTCTCCAA+GGG | 0.624257 | 5.3:-6039671 | None:intergenic |
| GCTTATGGTGGTCTTGCACG+AGG | 0.624672 | 5.3:+6039499 | MS.gene09779:CDS |
| TAACATTGTGCTCTGCGCAG+AGG | 0.632440 | 5.3:-6039621 | None:intergenic |
| GGTTACCGGATGCTCTTGTG+TGG | 0.638821 | 5.3:+6039906 | MS.gene09779:CDS |
| GCGGAGATAGAGGCACAGAG+AGG | 0.671978 | 5.3:-6038402 | None:intergenic |
| GGATGCGATTTGCAGGAAGG+CGG | 0.685140 | 5.3:-6038421 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATATATTTTTTTTATA+TGG | - | chr5.3:6037774-6037793 | None:intergenic | 0.0% |
| !!! | TAGTTAATTTTTTATTTTGT+AGG | - | chr5.3:6038311-6038330 | None:intergenic | 10.0% |
| !! | AAAAAAACGTTAGTATTAAT+TGG | + | chr5.3:6038345-6038364 | MS.gene09779:intron | 15.0% |
| !! | AAAACAATAGAATAATTTGA+CGG | + | chr5.3:6037897-6037916 | MS.gene09779:intron | 15.0% |
| !! | AAAAGTTCACAATATAAATT+TGG | - | chr5.3:6039761-6039780 | None:intergenic | 15.0% |
| !! | AAAGTTCACAATATAAATTT+GGG | - | chr5.3:6039760-6039779 | None:intergenic | 15.0% |
| !!! | AAATGGTTTTGATAATATTT+TGG | - | chr5.3:6038228-6038247 | None:intergenic | 15.0% |
| !!! | ATATAAATTTTTAAGTTCGA+GGG | + | chr5.3:6037834-6037853 | MS.gene09779:intron | 15.0% |
| !!! | ATTCTTCTATTTATATGTTT+TGG | + | chr5.3:6039285-6039304 | MS.gene09779:intron | 15.0% |
| !!! | ATTTTCTAAAACCAATTTTA+CGG | - | chr5.3:6038266-6038285 | None:intergenic | 15.0% |
| !!! | TATATAAATTTTTAAGTTCG+AGG | + | chr5.3:6037833-6037852 | MS.gene09779:intron | 15.0% |
| !!! | TGAAGTTTAGTTAATTTTAA+GGG | + | chr5.3:6037963-6037982 | MS.gene09779:intron | 15.0% |
| !!! | TTGAAGTTTAGTTAATTTTA+AGG | + | chr5.3:6037962-6037981 | MS.gene09779:intron | 15.0% |
| !!! | TTGTTTTAAATTTACATTGA+AGG | - | chr5.3:6037663-6037682 | None:intergenic | 15.0% |
| !!! | TTGTTTTCTAACAAATAAAA+AGG | - | chr5.3:6038035-6038054 | None:intergenic | 15.0% |
| !!! | TTTTATTTGTTAGAAAACAA+CGG | + | chr5.3:6038035-6038054 | MS.gene09779:intron | 15.0% |
| !! | AAAAATAAGATAAATCCAAC+TGG | + | chr5.3:6039060-6039079 | MS.gene09779:intron | 20.0% |
| !! | AAAATAAGATAAATCCAACT+GGG | + | chr5.3:6039061-6039080 | MS.gene09779:intron | 20.0% |
| !! | ACAATATAAATTTGGGAATT+GGG | - | chr5.3:6039753-6039772 | None:intergenic | 20.0% |
| !! | ATTACTTGTAGTTATTACTA+AGG | - | chr5.3:6039173-6039192 | None:intergenic | 20.0% |
| !! | CATTGAAGGATTTATATTAA+AGG | - | chr5.3:6037649-6037668 | None:intergenic | 20.0% |
| !! | CTATTAACTATCGTAAAATT+AGG | + | chr5.3:6037717-6037736 | MS.gene09779:intron | 20.0% |
| !! | TAGTATTAATTGGAAAAGTA+GGG | + | chr5.3:6038355-6038374 | MS.gene09779:intron | 20.0% |
| !! | TTAGTATTAATTGGAAAAGT+AGG | + | chr5.3:6038354-6038373 | MS.gene09779:intron | 20.0% |
| !! | TTCAAATGCAATTGTAATTT+AGG | + | chr5.3:6038616-6038635 | MS.gene09779:intron | 20.0% |
| !!! | TAAAGATTTTTAAACTTGCA+AGG | - | chr5.3:6039338-6039357 | None:intergenic | 20.0% |
| !!! | TATAAATTTTTAAGTTCGAG+GGG | + | chr5.3:6037835-6037854 | MS.gene09779:intron | 20.0% |
| !!! | TTATTTTGTAGGAAAGTAAA+TGG | - | chr5.3:6038300-6038319 | None:intergenic | 20.0% |
| ! | AAAACTAGGTTAAGAATCAA+GGG | - | chr5.3:6039701-6039720 | None:intergenic | 25.0% |
| ! | AACTTATGAAAACAGCTTAT+GGG | - | chr5.3:6038734-6038753 | None:intergenic | 25.0% |
| ! | AATTCCTGCATAAAACAAAA+TGG | - | chr5.3:6038512-6038531 | None:intergenic | 25.0% |
| ! | ATCCTGCAAACAAAAAAAAA+AGG | - | chr5.3:6040011-6040030 | None:intergenic | 25.0% |
| ! | ATCTTAAACGATAAAACTAC+GGG | - | chr5.3:6039087-6039106 | None:intergenic | 25.0% |
| ! | ATTGACGAAACATACAATTT+CGG | + | chr5.3:6037990-6038009 | MS.gene09779:intron | 25.0% |
| ! | CACAATATAAATTTGGGAAT+TGG | - | chr5.3:6039754-6039773 | None:intergenic | 25.0% |
| ! | GATCTTAAACGATAAAACTA+CGG | - | chr5.3:6039088-6039107 | None:intergenic | 25.0% |
| ! | TAAAACTAGGTTAAGAATCA+AGG | - | chr5.3:6039702-6039721 | None:intergenic | 25.0% |
| ! | TCCTGCAAACAAAAAAAAAA+GGG | - | chr5.3:6040010-6040029 | None:intergenic | 25.0% |
| ! | TTAGCATGAAAAAAGACAAT+AGG | - | chr5.3:6039969-6039988 | None:intergenic | 25.0% |
| !! | AATGTATAGAACTTTTTACC+AGG | - | chr5.3:6039268-6039287 | None:intergenic | 25.0% |
| !!! | CTTTATTTTTTCTTTTGCTG+TGG | - | chr5.3:6038692-6038711 | None:intergenic | 25.0% |
| !!! | TTTTTTGTTTGCAGGATTTT+GGG | + | chr5.3:6040014-6040033 | MS.gene09779:intron | 25.0% |
| !!! | TTTTTTTATCCTTGACTCAA+AGG | - | chr5.3:6037813-6037832 | None:intergenic | 25.0% |
| !!! | TTTTTTTGTTTGCAGGATTT+TGG | + | chr5.3:6040013-6040032 | MS.gene09779:intron | 25.0% |
| AATAGAATAATTTGACGGAG+GGG | + | chr5.3:6037902-6037921 | MS.gene09779:intron | 30.0% | |
| ACAAGGAATTGGATAAAACT+AGG | - | chr5.3:6039715-6039734 | None:intergenic | 30.0% | |
| ACAATAGAATAATTTGACGG+AGG | + | chr5.3:6037900-6037919 | MS.gene09779:intron | 30.0% | |
| ACCACTAGATAAGTTCAATT+AGG | + | chr5.3:6038852-6038871 | MS.gene09779:intron | 30.0% | |
| AGATAACTGAATCTGATATC+CGG | + | chr5.3:6039144-6039163 | MS.gene09779:intron | 30.0% | |
| ATCAACCAAGAAATATGTCA+GGG | + | chr5.3:6038550-6038569 | MS.gene09779:intron | 30.0% | |
| ATTCATTCAATCTCGTGTTT+CGG | - | chr5.3:6038127-6038146 | None:intergenic | 30.0% | |
| CAACTTATGAAAACAGCTTA+TGG | - | chr5.3:6038735-6038754 | None:intergenic | 30.0% | |
| CAATAGAATAATTTGACGGA+GGG | + | chr5.3:6037901-6037920 | MS.gene09779:intron | 30.0% | |
| CTGCATAAAACAAAATGGAA+CGG | - | chr5.3:6038507-6038526 | None:intergenic | 30.0% | |
| CTTTAATATCCTTTGAGTCA+AGG | + | chr5.3:6037801-6037820 | MS.gene09779:intron | 30.0% | |
| GATTAAAGTTGTGCAATTTC+AGG | + | chr5.3:6037932-6037951 | MS.gene09779:intron | 30.0% | |
| TATCAACCAAGAAATATGTC+AGG | + | chr5.3:6038549-6038568 | MS.gene09779:intron | 30.0% | |
| TGCATAAAACAAAATGGAAC+GGG | - | chr5.3:6038506-6038525 | None:intergenic | 30.0% | |
| TGGAAATGAGTTATGATAAG+TGG | - | chr5.3:6038672-6038691 | None:intergenic | 30.0% | |
| TTCACCAATTTGACATAATC+AGG | - | chr5.3:6039598-6039617 | None:intergenic | 30.0% | |
| TTGACGAAACATACAATTTC+GGG | + | chr5.3:6037991-6038010 | MS.gene09779:intron | 30.0% | |
| ! | CTTGGTTGATATAAAAGAGA+TGG | - | chr5.3:6038540-6038559 | None:intergenic | 30.0% |
| !! | GCTGTTTTCATAAGTTGTAT+TGG | + | chr5.3:6038738-6038757 | MS.gene09779:intron | 30.0% |
| !! | TTTTTGTTTGCAGGATTTTG+GGG | + | chr5.3:6040015-6040034 | MS.gene09779:intron | 30.0% |
| !!! | TCCCTTTTTTTTTTGTTTGC+AGG | + | chr5.3:6040006-6040025 | MS.gene09779:intron | 30.0% |
| AAATAAGCTGAAGACAGCTA+AGG | + | chr5.3:6038772-6038791 | MS.gene09779:intron | 35.0% | |
| ACAAATAAGCCAATCCAAAC+AGG | - | chr5.3:6038885-6038904 | None:intergenic | 35.0% | |
| ACATACCCTGACATATTTCT+TGG | - | chr5.3:6038558-6038577 | None:intergenic | 35.0% | |
| AGATAAGTTCAATTAGGCCA+AGG | + | chr5.3:6038858-6038877 | MS.gene09779:intron | 35.0% | |
| ATCAATCTTGCACAACTACA+TGG | - | chr5.3:6039866-6039885 | None:intergenic | 35.0% | |
| ATCAGATGTTTGTCCAAACA+GGG | - | chr5.3:6038642-6038661 | None:intergenic | 35.0% | |
| ATGCTGCAAAACAACATTGT+AGG | - | chr5.3:6040053-6040072 | None:intergenic | 35.0% | |
| ATTGTAATTTAGGCCCTGTT+TGG | + | chr5.3:6038626-6038645 | MS.gene09779:intron | 35.0% | |
| CCAACCTGATTATGTCAAAT+TGG | + | chr5.3:6039591-6039610 | MS.gene09779:CDS | 35.0% | |
| CCAATTTGACATAATCAGGT+TGG | - | chr5.3:6039594-6039613 | None:intergenic | 35.0% | |
| GATAAGTTCAATTAGGCCAA+GGG | + | chr5.3:6038859-6038878 | MS.gene09779:intron | 35.0% | |
| GCCTAATTGAACTTATCTAG+TGG | - | chr5.3:6038856-6038875 | None:intergenic | 35.0% | |
| GTAGTTATTACTAAGGTGAC+CGG | - | chr5.3:6039166-6039185 | None:intergenic | 35.0% | |
| TAAAGTTGTGCAATTTCAGG+AGG | + | chr5.3:6037935-6037954 | MS.gene09779:intron | 35.0% | |
| TATCAGATGTTTGTCCAAAC+AGG | - | chr5.3:6038643-6038662 | None:intergenic | 35.0% | |
| TGACGAAACATACAATTTCG+GGG | + | chr5.3:6037992-6038011 | MS.gene09779:intron | 35.0% | |
| TTCATTCAATCTCGTGTTTC+GGG | - | chr5.3:6038126-6038145 | None:intergenic | 35.0% | |
| TTGATTCAGAAGGTAAAGCT+AGG | + | chr5.3:6039881-6039900 | MS.gene09779:CDS | 35.0% | |
| ! | TTGTGCAAGATTGATTCAGA+AGG | + | chr5.3:6039871-6039890 | MS.gene09779:CDS | 35.0% |
| ! | TTTGTTATGCAGTGAAGAAG+AGG | + | chr5.3:6039384-6039403 | MS.gene09779:intron | 35.0% |
| !! | AAACTGATTCGAGTTGTTTC+AGG | - | chr5.3:6039115-6039134 | None:intergenic | 35.0% |
| !! | TATTGTTTTGCAAATACCCC+CGG | - | chr5.3:6037886-6037905 | None:intergenic | 35.0% |
| !!! | CGTTCCATTTTGTTTTATGC+AGG | + | chr5.3:6038505-6038524 | MS.gene09779:intron | 35.0% |
| AAAGCAGTCATGATGTCCAT+TGG | - | chr5.3:6039454-6039473 | None:intergenic | 40.0% | |
| AATGGATGTGCACAAGGAAT+TGG | - | chr5.3:6039726-6039745 | None:intergenic | 40.0% | |
| ACATAAGTGCAAAACTTCCG+GGG | + | chr5.3:6037866-6037885 | MS.gene09779:intron | 40.0% | |
| AGCTATACATGAGACACACA+AGG | - | chr5.3:6039312-6039331 | None:intergenic | 40.0% | |
| ATTTGGGAATTGGGAGCAAA+TGG | - | chr5.3:6039744-6039763 | None:intergenic | 40.0% | |
| CACATAAGTGCAAAACTTCC+GGG | + | chr5.3:6037865-6037884 | MS.gene09779:intron | 40.0% | |
| CATAAGCACGAGACTTTCTA+AGG | - | chr5.3:6039486-6039505 | None:intergenic | 40.0% | |
| CTTAGAAAGTCTCGTGCTTA+TGG | + | chr5.3:6039484-6039503 | MS.gene09779:CDS | 40.0% | |
| GACGAAACATACAATTTCGG+GGG | + | chr5.3:6037993-6038012 | MS.gene09779:intron | 40.0% | |
| GCACATAAGTGCAAAACTTC+CGG | + | chr5.3:6037864-6037883 | MS.gene09779:intron | 40.0% | |
| GGAACACGTCTCAAAGTAAA+TGG | - | chr5.3:6038245-6038264 | None:intergenic | 40.0% | |
| TGAGACGTGTTCCGTAAAAT+TGG | + | chr5.3:6038252-6038271 | MS.gene09779:intron | 40.0% | |
| TGTCTCAAGATTTATGCTCC+TGG | + | chr5.3:6039247-6039266 | MS.gene09779:intron | 40.0% | |
| TTCAGAAGGTAAAGCTAGGA+AGG | + | chr5.3:6039885-6039904 | MS.gene09779:CDS | 40.0% | |
| !! | ATCAGGTTGGTCACAATCTT+CGG | - | chr5.3:6039581-6039600 | None:intergenic | 40.0% |
| AATGATGCAACAAGACTGCG+CGG | - | chr5.3:6039810-6039829 | None:intergenic | 45.0% | |
| AGAAAGTCTCGTGCTTATGG+TGG | + | chr5.3:6039487-6039506 | MS.gene09779:CDS | 45.0% | |
| AGCTGGTATGTACACTCTCA+CGG | + | chr5.3:6038444-6038463 | MS.gene09779:intron | 45.0% | |
| ATGCTCTTGTGTGGTTGTCA+GGG | + | chr5.3:6039915-6039934 | MS.gene09779:CDS | 45.0% | |
| CAGAGAGGGTTTCAATTCGA+TGG | - | chr5.3:6038390-6038409 | None:intergenic | 45.0% | |
| CATAAGTGCAAAACTTCCGG+GGG | + | chr5.3:6037867-6037886 | MS.gene09779:intron | 45.0% | |
| GGTAAAGCTAGGAAGGTTAC+CGG | + | chr5.3:6039892-6039911 | MS.gene09779:CDS | 45.0% | |
| !! | TTGTTTGCAGGATTTTGGGG+AGG | + | chr5.3:6040018-6040037 | MS.gene09779:intron | 45.0% |
| !!! | AGTTAATTTTTAAATTAAAT+AGG | - | chr5.3:6038088-6038107 | None:intergenic | 5.0% |
| !!! | GAATTTTTTTTTTTTTTTTT+AGG | + | chr5.3:6038155-6038174 | MS.gene09779:intron | 5.0% |
| !!! | TATTTATTTTATTGATTTTT+GGG | + | chr5.3:6039831-6039850 | MS.gene09779:intron | 5.0% |
| !!! | TTATTTATTTTATTGATTTT+TGG | + | chr5.3:6039830-6039849 | MS.gene09779:intron | 5.0% |
| AACATTGTGCTCTGCGCAGA+GGG | - | chr5.3:6039623-6039642 | None:intergenic | 50.0% | |
| AATTAGGCCAAGGGCCTGTT+TGG | + | chr5.3:6038868-6038887 | MS.gene09779:intron | 50.0% | |
| ATGATGCAACAAGACTGCGC+GGG | - | chr5.3:6039809-6039828 | None:intergenic | 50.0% | |
| CTTGCACGAGGTCTTCATGA+AGG | + | chr5.3:6039511-6039530 | MS.gene09779:CDS | 50.0% | |
| CTTGTGTGGTTGTCAGGGTA+TGG | + | chr5.3:6039920-6039939 | MS.gene09779:intron | 50.0% | |
| GATAAAACTACGGGCCCAGT+TGG | - | chr5.3:6039078-6039097 | None:intergenic | 50.0% | |
| GATGCTCTTGTGTGGTTGTC+AGG | + | chr5.3:6039914-6039933 | MS.gene09779:CDS | 50.0% | |
| GGAATTGCAGCAGCAACAAC+AGG | - | chr5.3:6039424-6039443 | None:intergenic | 50.0% | |
| GGAGCAAATGGATGTGCACA+AGG | - | chr5.3:6039732-6039751 | None:intergenic | 50.0% | |
| GTTCCAAGTGCAAAGACCCT+TGG | + | chr5.3:6039655-6039674 | MS.gene09779:CDS | 50.0% | |
| GTTGTTGCTGCTGCAATTCC+AGG | + | chr5.3:6039424-6039443 | MS.gene09779:CDS | 50.0% | |
| TAACATTGTGCTCTGCGCAG+AGG | - | chr5.3:6039624-6039643 | None:intergenic | 50.0% | |
| TCTCCAAGGGTCTTTGCACT+TGG | - | chr5.3:6039661-6039680 | None:intergenic | 50.0% | |
| TGCAAAGACCCTTGGAGAGT+GGG | + | chr5.3:6039663-6039682 | MS.gene09779:CDS | 50.0% | |
| ! | GTGAGAGTGTACATACCAGC+TGG | - | chr5.3:6038445-6038464 | None:intergenic | 50.0% |
| !! | GACAACCACACAAGAGCATC+CGG | - | chr5.3:6039914-6039933 | None:intergenic | 50.0% |
| !! | TCTCGTGTTTCGGGTTTGCA+TGG | - | chr5.3:6038117-6038136 | None:intergenic | 50.0% |
| ACCAGCTGGATGCGATTTGC+AGG | - | chr5.3:6038431-6038450 | None:intergenic | 55.0% | |
| AGCCAATCCAAACAGGCCCT+TGG | - | chr5.3:6038878-6038897 | None:intergenic | 55.0% | |
| GCTGGATGCGATTTGCAGGA+AGG | - | chr5.3:6038427-6038446 | None:intergenic | 55.0% | |
| GGATGCGATTTGCAGGAAGG+CGG | - | chr5.3:6038424-6038443 | None:intergenic | 55.0% | |
| GGTTACCGGATGCTCTTGTG+TGG | + | chr5.3:6039906-6039925 | MS.gene09779:CDS | 55.0% | |
| GTGCAAAGACCCTTGGAGAG+TGG | + | chr5.3:6039662-6039681 | MS.gene09779:CDS | 55.0% | |
| TCCTGCAAATCGCATCCAGC+TGG | + | chr5.3:6038427-6038446 | MS.gene09779:CDS | 55.0% | |
| TGCAATTCCAGGCGAGCCAA+TGG | + | chr5.3:6039435-6039454 | MS.gene09779:CDS | 55.0% | |
| TTGCAGGAAGGCGGAGATAG+AGG | - | chr5.3:6038415-6038434 | None:intergenic | 55.0% | |
| ! | CGGAGATAGAGGCACAGAGA+GGG | - | chr5.3:6038404-6038423 | None:intergenic | 55.0% |
| ! | GCTTATGGTGGTCTTGCACG+AGG | + | chr5.3:6039499-6039518 | MS.gene09779:CDS | 55.0% |
| !! | ATGATGTCCATTGGCTCGCC+TGG | - | chr5.3:6039445-6039464 | None:intergenic | 55.0% |
| AAGACCCTTGGAGAGTGGGC+TGG | + | chr5.3:6039667-6039686 | MS.gene09779:CDS | 60.0% | |
| GGCCAAGGGCCTGTTTGGAT+TGG | + | chr5.3:6038873-6038892 | MS.gene09779:intron | 60.0% | |
| TACGCCAGCCCACTCTCCAA+GGG | - | chr5.3:6039674-6039693 | None:intergenic | 60.0% | |
| TTACGCCAGCCCACTCTCCA+AGG | - | chr5.3:6039675-6039694 | None:intergenic | 60.0% | |
| ! | GCGGAGATAGAGGCACAGAG+AGG | - | chr5.3:6038405-6038424 | None:intergenic | 60.0% |
| GCAACAAGACTGCGCGGGCA+TGG | - | chr5.3:6039804-6039823 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 6037613 | 6040072 | 6037613 | ID=MS.gene09779 |
| chr5.3 | mRNA | 6037613 | 6040072 | 6037613 | ID=MS.gene09779.t1;Parent=MS.gene09779 |
| chr5.3 | exon | 6037613 | 6037621 | 6037613 | ID=MS.gene09779.t1.exon1;Parent=MS.gene09779.t1 |
| chr5.3 | CDS | 6037613 | 6037621 | 6037613 | ID=cds.MS.gene09779.t1;Parent=MS.gene09779.t1 |
| chr5.3 | exon | 6038376 | 6038448 | 6038376 | ID=MS.gene09779.t1.exon2;Parent=MS.gene09779.t1 |
| chr5.3 | CDS | 6038376 | 6038448 | 6038376 | ID=cds.MS.gene09779.t1;Parent=MS.gene09779.t1 |
| chr5.3 | exon | 6039401 | 6039690 | 6039401 | ID=MS.gene09779.t1.exon3;Parent=MS.gene09779.t1 |
| chr5.3 | CDS | 6039401 | 6039690 | 6039401 | ID=cds.MS.gene09779.t1;Parent=MS.gene09779.t1 |
| chr5.3 | exon | 6039871 | 6039936 | 6039871 | ID=MS.gene09779.t1.exon4;Parent=MS.gene09779.t1 |
| chr5.3 | CDS | 6039871 | 6039936 | 6039871 | ID=cds.MS.gene09779.t1;Parent=MS.gene09779.t1 |
| chr5.3 | exon | 6040028 | 6040072 | 6040028 | ID=MS.gene09779.t1.exon5;Parent=MS.gene09779.t1 |
| chr5.3 | CDS | 6040028 | 6040072 | 6040028 | ID=cds.MS.gene09779.t1;Parent=MS.gene09779.t1 |
| Gene Sequence |
| Protein sequence |
