Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09780.t1 | XP_003611335.1 | 99.3 | 142 | 1 | 0 | 1 | 142 | 1 | 142 | 9.30E-73 | 282.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09780.t1 | Q9SKZ3 | 70.8 | 144 | 40 | 1 | 1 | 142 | 1 | 144 | 7.0e-53 | 208.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09780.t1 | G7JXD6 | 99.3 | 142 | 1 | 0 | 1 | 142 | 1 | 142 | 6.7e-73 | 282.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050134 | MS.gene09780 | 0.881525 | 2.23E-70 | -1.69E-46 |
MS.gene050791 | MS.gene09780 | 0.827659 | 1.38E-54 | -1.69E-46 |
MS.gene051984 | MS.gene09780 | 0.834229 | 3.38E-56 | -1.69E-46 |
MS.gene052664 | MS.gene09780 | 0.834549 | 2.81E-56 | -1.69E-46 |
MS.gene052666 | MS.gene09780 | 0.838136 | 3.44E-57 | -1.69E-46 |
MS.gene053224 | MS.gene09780 | 0.87766 | 5.26E-69 | -1.69E-46 |
MS.gene057272 | MS.gene09780 | 0.825132 | 5.54E-54 | -1.69E-46 |
MS.gene057641 | MS.gene09780 | 0.825273 | 5.13E-54 | -1.69E-46 |
MS.gene057643 | MS.gene09780 | 0.85231 | 5.02E-61 | -1.69E-46 |
MS.gene060483 | MS.gene09780 | 0.843054 | 1.77E-58 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene09780 | MS.gene65180 | PPI |
MS.gene09780 | MS.gene053443 | PPI |
MS.gene09780 | MS.gene034249 | PPI |
MS.gene02807 | MS.gene09780 | PPI |
MS.gene57391 | MS.gene09780 | PPI |
MS.gene013786 | MS.gene09780 | PPI |
MS.gene09780 | MS.gene015411 | PPI |
MS.gene09780 | MS.gene073888 | PPI |
MS.gene09780 | MS.gene02572 | PPI |
MS.gene030614 | MS.gene09780 | PPI |
MS.gene09762 | MS.gene09780 | PPI |
MS.gene09780 | MS.gene09762 | PPI |
MS.gene09780 | MS.gene053224 | PPI |
MS.gene09780 | MS.gene28384 | PPI |
MS.gene09780 | MS.gene70215 | PPI |
MS.gene09780 | MS.gene000610 | PPI |
MS.gene09780 | MS.gene46264 | PPI |
MS.gene09780 | MS.gene09779 | PPI |
MS.gene53517 | MS.gene09780 | PPI |
MS.gene09780 | MS.gene025830 | PPI |
MS.gene03201 | MS.gene09780 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09780.t1 | MTR_5g012890 | 99.296 | 142 | 1 | 0 | 1 | 142 | 1 | 142 | 3.09e-101 | 286 |
MS.gene09780.t1 | MTR_8g093770 | 94.444 | 126 | 7 | 0 | 17 | 142 | 18 | 143 | 2.31e-86 | 248 |
MS.gene09780.t1 | MTR_4g006830 | 94.444 | 126 | 7 | 0 | 17 | 142 | 19 | 144 | 3.11e-85 | 246 |
MS.gene09780.t1 | MTR_5g012890 | 96.262 | 107 | 4 | 0 | 1 | 107 | 1 | 107 | 5.85e-71 | 208 |
MS.gene09780.t1 | MTR_4g073510 | 70.370 | 54 | 14 | 1 | 1 | 52 | 1 | 54 | 6.42e-17 | 76.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09780.t1 | AT2G32060 | 74.400 | 125 | 31 | 1 | 18 | 142 | 21 | 144 | 1.33e-66 | 199 |
MS.gene09780.t1 | AT2G32060 | 74.400 | 125 | 31 | 1 | 18 | 142 | 21 | 144 | 1.33e-66 | 199 |
MS.gene09780.t1 | AT2G32060 | 74.400 | 125 | 31 | 1 | 18 | 142 | 21 | 144 | 1.33e-66 | 199 |
MS.gene09780.t1 | AT1G15930 | 74.400 | 125 | 31 | 1 | 18 | 142 | 21 | 144 | 5.31e-64 | 192 |
MS.gene09780.t1 | AT1G15930 | 74.400 | 125 | 31 | 1 | 18 | 142 | 21 | 144 | 5.31e-64 | 192 |
Find 35 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCACCAATTTGACATAATC+AGG | 0.268051 | 5.3:-6081212 | None:intergenic |
GTTGTTGCTGCTGCAATTCC+AGG | 0.269519 | 5.3:+6081041 | MS.gene09780:CDS |
GATGCTCTTGTGTGGTTGTC+AGG | 0.354575 | 5.3:+6081531 | MS.gene09780:CDS |
ATGCTGCAAAACAACATTGT+AGG | 0.363171 | 5.3:-6081667 | None:intergenic |
CATAAGCACGAGACTTTCTA+AGG | 0.363450 | 5.3:-6081100 | None:intergenic |
CCAACCTGATTATGTCAAAT+TGG | 0.373462 | 5.3:+6081208 | MS.gene09780:CDS |
CTTAGAAAGTCTCGTGCTTA+TGG | 0.383982 | 5.3:+6081101 | MS.gene09780:CDS |
ATCAGGTTGGTCACAATCTT+CGG | 0.412966 | 5.3:-6081195 | None:intergenic |
ATGATGTCCATTGGCTCGCC+TGG | 0.437864 | 5.3:-6081059 | None:intergenic |
TCTCCAAGGGTCTTTGCACT+TGG | 0.459795 | 5.3:-6081275 | None:intergenic |
TATCAACCAAGAAATATGTC+AGG | 0.459989 | 5.3:+6080166 | None:intergenic |
GGAATTGCAGCAGCAACAAC+AGG | 0.463311 | 5.3:-6081038 | None:intergenic |
GGTAAAGCTAGGAAGGTTAC+CGG | 0.476827 | 5.3:+6081509 | MS.gene09780:CDS |
AACATTGTGCTCTGCGCAGA+GGG | 0.503587 | 5.3:-6081237 | None:intergenic |
GACAACCACACAAGAGCATC+CGG | 0.522597 | 5.3:-6081528 | None:intergenic |
TTACGCCAGCCCACTCTCCA+AGG | 0.529322 | 5.3:-6081289 | None:intergenic |
CCAATTTGACATAATCAGGT+TGG | 0.530247 | 5.3:-6081208 | None:intergenic |
TGCAAAGACCCTTGGAGAGT+GGG | 0.530356 | 5.3:+6081280 | MS.gene09780:CDS |
TTTGTTATGCAGTGAAGAAG+AGG | 0.537025 | 5.3:+6081001 | MS.gene09780:intron |
GTTCCAAGTGCAAAGACCCT+TGG | 0.537039 | 5.3:+6081272 | MS.gene09780:CDS |
AAGACCCTTGGAGAGTGGGC+TGG | 0.538691 | 5.3:+6081284 | MS.gene09780:CDS |
TTGATTCAGAAGGTAAAGCT+AGG | 0.543764 | 5.3:+6081498 | MS.gene09780:CDS |
TTCAGAAGGTAAAGCTAGGA+AGG | 0.557714 | 5.3:+6081502 | MS.gene09780:CDS |
TGCAATTCCAGGCGAGCCAA+TGG | 0.568250 | 5.3:+6081052 | MS.gene09780:CDS |
GTGCAAAGACCCTTGGAGAG+TGG | 0.569975 | 5.3:+6081279 | MS.gene09780:CDS |
ATGCTCTTGTGTGGTTGTCA+GGG | 0.586706 | 5.3:+6081532 | MS.gene09780:CDS |
AAAGCAGTCATGATGTCCAT+TGG | 0.589394 | 5.3:-6081068 | None:intergenic |
CTTGCACGAGGTCTTCATGA+AGG | 0.605005 | 5.3:+6081128 | MS.gene09780:CDS |
AGAAAGTCTCGTGCTTATGG+TGG | 0.620799 | 5.3:+6081104 | MS.gene09780:CDS |
TTGTGCAAGATTGATTCAGA+AGG | 0.623879 | 5.3:+6081488 | MS.gene09780:CDS |
TACGCCAGCCCACTCTCCAA+GGG | 0.624257 | 5.3:-6081288 | None:intergenic |
GCTTATGGTGGTCTTGCACG+AGG | 0.624672 | 5.3:+6081116 | MS.gene09780:CDS |
TAACATTGTGCTCTGCGCAG+AGG | 0.632440 | 5.3:-6081238 | None:intergenic |
ATCAACCAAGAAATATGTCA+GGG | 0.636797 | 5.3:+6080167 | None:intergenic |
GGTTACCGGATGCTCTTGTG+TGG | 0.638821 | 5.3:+6081523 | MS.gene09780:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAGTTCACAATATAAATT+TGG | - | chr5.3:6081378-6081397 | None:intergenic | 15.0% |
!! | AAAGTTCACAATATAAATTT+GGG | - | chr5.3:6081377-6081396 | None:intergenic | 15.0% |
!!! | ATTCTTCTATTTATATGTTT+TGG | + | chr5.3:6080902-6080921 | MS.gene09780:intron | 15.0% |
!! | AAAAATAAGATAAATCCAAC+TGG | + | chr5.3:6080677-6080696 | MS.gene09780:intron | 20.0% |
!! | AAAATAAGATAAATCCAACT+GGG | + | chr5.3:6080678-6080697 | MS.gene09780:intron | 20.0% |
!! | ACAATATAAATTTGGGAATT+GGG | - | chr5.3:6081370-6081389 | None:intergenic | 20.0% |
!! | ATTACTTGTAGTTATTACTA+AGG | - | chr5.3:6080790-6080809 | None:intergenic | 20.0% |
!! | TTCAAATGCAATTGTAATTT+AGG | + | chr5.3:6080233-6080252 | MS.gene09780:intron | 20.0% |
!!! | TAAAGATTTTTAAACTTGCA+AGG | - | chr5.3:6080955-6080974 | None:intergenic | 20.0% |
! | AAAACTAGGTTAAGAATCAA+GGG | - | chr5.3:6081318-6081337 | None:intergenic | 25.0% |
! | AACTTATGAAAACAGCTTAT+GGG | - | chr5.3:6080351-6080370 | None:intergenic | 25.0% |
! | ATCCTGCAAACAAAAAAAAA+AGG | - | chr5.3:6081628-6081647 | None:intergenic | 25.0% |
! | ATCTTAAACGATAAAACTAC+GGG | - | chr5.3:6080704-6080723 | None:intergenic | 25.0% |
! | CACAATATAAATTTGGGAAT+TGG | - | chr5.3:6081371-6081390 | None:intergenic | 25.0% |
! | GATCTTAAACGATAAAACTA+CGG | - | chr5.3:6080705-6080724 | None:intergenic | 25.0% |
! | TAAAACTAGGTTAAGAATCA+AGG | - | chr5.3:6081319-6081338 | None:intergenic | 25.0% |
! | TCCTGCAAACAAAAAAAAAA+GGG | - | chr5.3:6081627-6081646 | None:intergenic | 25.0% |
! | TTAGCATGAAAAAAGACAAT+AGG | - | chr5.3:6081586-6081605 | None:intergenic | 25.0% |
!! | AATGTATAGAACTTTTTACC+AGG | - | chr5.3:6080885-6080904 | None:intergenic | 25.0% |
!!! | CTTTATTTTTTCTTTTGCTG+TGG | - | chr5.3:6080309-6080328 | None:intergenic | 25.0% |
!!! | TTTTTTGTTTGCAGGATTTT+GGG | + | chr5.3:6081631-6081650 | MS.gene09780:intron | 25.0% |
!!! | TTTTTTTGTTTGCAGGATTT+TGG | + | chr5.3:6081630-6081649 | MS.gene09780:intron | 25.0% |
ACAAGGAATTGGATAAAACT+AGG | - | chr5.3:6081332-6081351 | None:intergenic | 30.0% | |
ACCACTAGATAAGTTCAATT+AGG | + | chr5.3:6080469-6080488 | MS.gene09780:intron | 30.0% | |
AGATAACTGAATCTGATATC+CGG | + | chr5.3:6080761-6080780 | MS.gene09780:intron | 30.0% | |
CAACTTATGAAAACAGCTTA+TGG | - | chr5.3:6080352-6080371 | None:intergenic | 30.0% | |
TGGAAATGAGTTATGATAAG+TGG | - | chr5.3:6080289-6080308 | None:intergenic | 30.0% | |
TTCACCAATTTGACATAATC+AGG | - | chr5.3:6081215-6081234 | None:intergenic | 30.0% | |
!! | GCTGTTTTCATAAGTTGTAT+TGG | + | chr5.3:6080355-6080374 | MS.gene09780:intron | 30.0% |
!! | TTTTTGTTTGCAGGATTTTG+GGG | + | chr5.3:6081632-6081651 | MS.gene09780:intron | 30.0% |
!!! | TCCCTTTTTTTTTTGTTTGC+AGG | + | chr5.3:6081623-6081642 | MS.gene09780:intron | 30.0% |
AAATAAGCTGAAGACAGCTA+AGG | + | chr5.3:6080389-6080408 | MS.gene09780:intron | 35.0% | |
ACAAATAAGCCAATCCAAAC+AGG | - | chr5.3:6080502-6080521 | None:intergenic | 35.0% | |
AGATAAGTTCAATTAGGCCA+AGG | + | chr5.3:6080475-6080494 | MS.gene09780:intron | 35.0% | |
ATCAATCTTGCACAACTACA+TGG | - | chr5.3:6081483-6081502 | None:intergenic | 35.0% | |
ATCAGATGTTTGTCCAAACA+GGG | - | chr5.3:6080259-6080278 | None:intergenic | 35.0% | |
ATGCTGCAAAACAACATTGT+AGG | - | chr5.3:6081670-6081689 | None:intergenic | 35.0% | |
ATTGTAATTTAGGCCCTGTT+TGG | + | chr5.3:6080243-6080262 | MS.gene09780:intron | 35.0% | |
CCAACCTGATTATGTCAAAT+TGG | + | chr5.3:6081208-6081227 | MS.gene09780:CDS | 35.0% | |
CCAATTTGACATAATCAGGT+TGG | - | chr5.3:6081211-6081230 | None:intergenic | 35.0% | |
GATAAGTTCAATTAGGCCAA+GGG | + | chr5.3:6080476-6080495 | MS.gene09780:intron | 35.0% | |
GCCTAATTGAACTTATCTAG+TGG | - | chr5.3:6080473-6080492 | None:intergenic | 35.0% | |
GTAGTTATTACTAAGGTGAC+CGG | - | chr5.3:6080783-6080802 | None:intergenic | 35.0% | |
TATCAGATGTTTGTCCAAAC+AGG | - | chr5.3:6080260-6080279 | None:intergenic | 35.0% | |
TTGATTCAGAAGGTAAAGCT+AGG | + | chr5.3:6081498-6081517 | MS.gene09780:CDS | 35.0% | |
! | TTGTGCAAGATTGATTCAGA+AGG | + | chr5.3:6081488-6081507 | MS.gene09780:CDS | 35.0% |
! | TTTGTTATGCAGTGAAGAAG+AGG | + | chr5.3:6081001-6081020 | MS.gene09780:intron | 35.0% |
!! | AAACTGATTCGAGTTGTTTC+AGG | - | chr5.3:6080732-6080751 | None:intergenic | 35.0% |
AAAGCAGTCATGATGTCCAT+TGG | - | chr5.3:6081071-6081090 | None:intergenic | 40.0% | |
AATGGATGTGCACAAGGAAT+TGG | - | chr5.3:6081343-6081362 | None:intergenic | 40.0% | |
AGCTATACATGAGACACACA+AGG | - | chr5.3:6080929-6080948 | None:intergenic | 40.0% | |
ATTTGGGAATTGGGAGCAAA+TGG | - | chr5.3:6081361-6081380 | None:intergenic | 40.0% | |
CATAAGCACGAGACTTTCTA+AGG | - | chr5.3:6081103-6081122 | None:intergenic | 40.0% | |
CTTAGAAAGTCTCGTGCTTA+TGG | + | chr5.3:6081101-6081120 | MS.gene09780:CDS | 40.0% | |
TGTCTCAAGATTTATGCTCC+TGG | + | chr5.3:6080864-6080883 | MS.gene09780:intron | 40.0% | |
TTCAGAAGGTAAAGCTAGGA+AGG | + | chr5.3:6081502-6081521 | MS.gene09780:CDS | 40.0% | |
!! | ATCAGGTTGGTCACAATCTT+CGG | - | chr5.3:6081198-6081217 | None:intergenic | 40.0% |
AATGATGCAACAAGACTGCG+CGG | - | chr5.3:6081427-6081446 | None:intergenic | 45.0% | |
AGAAAGTCTCGTGCTTATGG+TGG | + | chr5.3:6081104-6081123 | MS.gene09780:CDS | 45.0% | |
ATGCTCTTGTGTGGTTGTCA+GGG | + | chr5.3:6081532-6081551 | MS.gene09780:CDS | 45.0% | |
GGTAAAGCTAGGAAGGTTAC+CGG | + | chr5.3:6081509-6081528 | MS.gene09780:CDS | 45.0% | |
!! | TTGTTTGCAGGATTTTGGGG+AGG | + | chr5.3:6081635-6081654 | MS.gene09780:intron | 45.0% |
!!! | TATTTATTTTATTGATTTTT+GGG | + | chr5.3:6081448-6081467 | MS.gene09780:intron | 5.0% |
!!! | TTATTTATTTTATTGATTTT+TGG | + | chr5.3:6081447-6081466 | MS.gene09780:intron | 5.0% |
AACATTGTGCTCTGCGCAGA+GGG | - | chr5.3:6081240-6081259 | None:intergenic | 50.0% | |
AATTAGGCCAAGGGCCTGTT+TGG | + | chr5.3:6080485-6080504 | MS.gene09780:intron | 50.0% | |
ATGATGCAACAAGACTGCGC+GGG | - | chr5.3:6081426-6081445 | None:intergenic | 50.0% | |
CTTGCACGAGGTCTTCATGA+AGG | + | chr5.3:6081128-6081147 | MS.gene09780:CDS | 50.0% | |
CTTGTGTGGTTGTCAGGGTA+TGG | + | chr5.3:6081537-6081556 | MS.gene09780:intron | 50.0% | |
GATAAAACTACGGGCCCAGT+TGG | - | chr5.3:6080695-6080714 | None:intergenic | 50.0% | |
GATGCTCTTGTGTGGTTGTC+AGG | + | chr5.3:6081531-6081550 | MS.gene09780:CDS | 50.0% | |
GGAATTGCAGCAGCAACAAC+AGG | - | chr5.3:6081041-6081060 | None:intergenic | 50.0% | |
GGAGCAAATGGATGTGCACA+AGG | - | chr5.3:6081349-6081368 | None:intergenic | 50.0% | |
GTTCCAAGTGCAAAGACCCT+TGG | + | chr5.3:6081272-6081291 | MS.gene09780:CDS | 50.0% | |
GTTGTTGCTGCTGCAATTCC+AGG | + | chr5.3:6081041-6081060 | MS.gene09780:CDS | 50.0% | |
TAACATTGTGCTCTGCGCAG+AGG | - | chr5.3:6081241-6081260 | None:intergenic | 50.0% | |
TCTCCAAGGGTCTTTGCACT+TGG | - | chr5.3:6081278-6081297 | None:intergenic | 50.0% | |
TGCAAAGACCCTTGGAGAGT+GGG | + | chr5.3:6081280-6081299 | MS.gene09780:CDS | 50.0% | |
!! | GACAACCACACAAGAGCATC+CGG | - | chr5.3:6081531-6081550 | None:intergenic | 50.0% |
AGCCAATCCAAACAGGCCCT+TGG | - | chr5.3:6080495-6080514 | None:intergenic | 55.0% | |
GGTTACCGGATGCTCTTGTG+TGG | + | chr5.3:6081523-6081542 | MS.gene09780:CDS | 55.0% | |
GTGCAAAGACCCTTGGAGAG+TGG | + | chr5.3:6081279-6081298 | MS.gene09780:CDS | 55.0% | |
TGCAATTCCAGGCGAGCCAA+TGG | + | chr5.3:6081052-6081071 | MS.gene09780:CDS | 55.0% | |
! | GCTTATGGTGGTCTTGCACG+AGG | + | chr5.3:6081116-6081135 | MS.gene09780:CDS | 55.0% |
!! | ATGATGTCCATTGGCTCGCC+TGG | - | chr5.3:6081062-6081081 | None:intergenic | 55.0% |
AAGACCCTTGGAGAGTGGGC+TGG | + | chr5.3:6081284-6081303 | MS.gene09780:CDS | 60.0% | |
GGCCAAGGGCCTGTTTGGAT+TGG | + | chr5.3:6080490-6080509 | MS.gene09780:intron | 60.0% | |
TACGCCAGCCCACTCTCCAA+GGG | - | chr5.3:6081291-6081310 | None:intergenic | 60.0% | |
TTACGCCAGCCCACTCTCCA+AGG | - | chr5.3:6081292-6081311 | None:intergenic | 60.0% | |
GCAACAAGACTGCGCGGGCA+TGG | - | chr5.3:6081421-6081440 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 6080181 | 6081704 | 6080181 | ID=MS.gene09780 |
chr5.3 | mRNA | 6080181 | 6081704 | 6080181 | ID=MS.gene09780.t1;Parent=MS.gene09780 |
chr5.3 | exon | 6080181 | 6080188 | 6080181 | ID=MS.gene09780.t1.exon1;Parent=MS.gene09780.t1 |
chr5.3 | CDS | 6080181 | 6080188 | 6080181 | ID=cds.MS.gene09780.t1;Parent=MS.gene09780.t1 |
chr5.3 | exon | 6081013 | 6081307 | 6081013 | ID=MS.gene09780.t1.exon2;Parent=MS.gene09780.t1 |
chr5.3 | CDS | 6081013 | 6081307 | 6081013 | ID=cds.MS.gene09780.t1;Parent=MS.gene09780.t1 |
chr5.3 | exon | 6081488 | 6081553 | 6081488 | ID=MS.gene09780.t1.exon3;Parent=MS.gene09780.t1 |
chr5.3 | CDS | 6081488 | 6081553 | 6081488 | ID=cds.MS.gene09780.t1;Parent=MS.gene09780.t1 |
chr5.3 | exon | 6081645 | 6081704 | 6081645 | ID=MS.gene09780.t1.exon4;Parent=MS.gene09780.t1 |
chr5.3 | CDS | 6081645 | 6081704 | 6081645 | ID=cds.MS.gene09780.t1;Parent=MS.gene09780.t1 |
Gene Sequence |
Protein sequence |