AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene007901


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene007901.t1 MTR_7g011550 79.673 551 108 1 1 551 1 547 0.0 904
MS.gene007901.t1 MTR_1g112330 44.190 568 284 5 1 537 1 566 3.19e-153 451
MS.gene007901.t1 MTR_1g112330 44.346 566 283 6 1 537 1 563 3.34e-153 451
MS.gene007901.t1 MTR_5g032190 43.728 574 274 9 1 538 1 561 2.47e-150 443
MS.gene007901.t1 MTR_1g112330 49.015 457 207 4 1 433 1 455 9.15e-141 415
MS.gene007901.t1 MTR_5g032190 47.289 461 218 5 1 441 1 456 8.98e-136 403
MS.gene007901.t1 MTR_5g032190 47.289 461 218 5 1 441 1 456 1.68e-135 402
MS.gene007901.t1 MTR_5g029580 56.173 324 135 2 210 530 23 342 1.42e-121 362
MS.gene007901.t1 MTR_7g011880 59.211 152 37 3 358 509 60 186 7.51e-48 165
MS.gene007901.t1 MTR_7g011640 58.015 131 36 3 90 219 15 127 8.08e-38 136
MS.gene007901.t1 MTR_2g090130 49.333 150 41 2 254 403 103 217 1.34e-37 138
MS.gene007901.t1 MTR_2g090130 49.231 130 30 2 27 154 14 109 4.81e-29 115
MS.gene007901.t1 MTR_3g077870 31.399 293 158 9 251 538 61 315 2.55e-35 135
MS.gene007901.t1 MTR_4g105740 30.537 298 165 9 246 537 43 304 1.52e-33 130
MS.gene007901.t1 MTR_4g105740 30.640 297 164 9 246 536 43 303 2.04e-33 129
MS.gene007901.t1 MTR_7g061850 46.457 127 59 1 184 310 6 123 6.92e-29 111
MS.gene007901.t1 MTR_8g088250 28.421 285 164 8 254 530 27 279 9.00e-28 113
MS.gene007901.t1 MTR_7g061730 70.000 50 15 0 487 536 1 50 4.31e-16 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene007901.t1 AT1G32230 35.765 562 305 11 11 530 15 562 4.76e-101 317
MS.gene007901.t1 AT1G32230 35.702 563 305 11 11 530 15 563 6.79e-101 317
MS.gene007901.t1 AT1G32230 35.765 562 305 11 11 530 15 562 9.50e-101 316
MS.gene007901.t1 AT1G32230 35.765 562 305 11 11 530 15 562 9.50e-101 316
MS.gene007901.t1 AT1G32230 35.765 562 305 11 11 530 15 562 9.50e-101 316
MS.gene007901.t1 AT1G32230 35.765 562 305 11 11 530 15 562 9.50e-101 316
MS.gene007901.t1 AT2G35510 36.346 509 260 11 58 526 71 555 2.18e-92 294
MS.gene007901.t1 AT2G35510 36.346 509 260 11 58 526 71 555 2.18e-92 294
MS.gene007901.t1 AT2G35510 40.314 382 206 7 58 426 71 443 2.64e-88 280
MS.gene007901.t1 AT1G23550 32.982 285 145 9 261 532 63 314 4.80e-36 137
MS.gene007901.t1 AT5G62520 27.986 293 171 5 244 530 42 300 3.80e-33 129
MS.gene007901.t1 AT1G70440 30.035 283 157 5 257 532 54 302 5.97e-32 125
MS.gene007901.t1 AT1G70440 30.035 283 157 5 257 532 54 302 5.97e-32 125
MS.gene007901.t1 AT5G62520 33.854 192 119 3 244 429 42 231 3.26e-28 113
MS.gene007901.t1 AT3G47720 30.126 239 123 6 298 536 117 311 1.78e-23 101

Find 125 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATGTGGTTCTTTCTTATT+AGG 0.157993 8.3:+47120101 None:intergenic
CATATATCCAATGAAATAAA+TGG 0.166586 8.3:-47120068 MS.gene007901:CDS
GTAAAAGCTACTAGTGTTTC+TGG 0.207608 8.3:-47118487 MS.gene007901:CDS
TCATGCTATGACTAACAAAA+TGG 0.219540 8.3:-47119973 MS.gene007901:CDS
CGTCGATAAGAAACATAATA+TGG 0.242284 8.3:+47118374 None:intergenic
ATCCACCCCATTTATTTCAT+TGG 0.284818 8.3:+47120061 None:intergenic
GCACAGAAGATGTTTCTTAC+AGG 0.289690 8.3:-47119855 MS.gene007901:CDS
TTGTGATATCAACCTGCTTT+TGG 0.292633 8.3:+47119745 None:intergenic
TTGTCAACAATGATGGAATA+TGG 0.327105 8.3:-47119663 MS.gene007901:CDS
GTTCCTATGTCGTGTCATAA+TGG 0.327755 8.3:-47119316 MS.gene007901:CDS
TCTCCGTCCAAATGCATATA+TGG 0.330665 8.3:-47119621 MS.gene007901:CDS
AGTAGTTGCGAATATGATAA+TGG 0.339409 8.3:-47119249 MS.gene007901:CDS
CAACCTATTGCGTGGATTGA+TGG 0.339855 8.3:-47120209 MS.gene007901:CDS
TTATAGAACATCAAACGTTT+TGG 0.343644 8.3:+47120389 None:intergenic
TCCAAATGCATATATGGTTT+TGG 0.346602 8.3:-47119615 MS.gene007901:CDS
TTCCTATGTCGTGTCATAAT+GGG 0.348589 8.3:-47119315 MS.gene007901:CDS
TCCTGATATTTCCAAGTCAT+TGG 0.362780 8.3:-47120447 MS.gene007901:CDS
ATACCATCAACAACGCATAT+TGG 0.365715 8.3:+47118350 None:intergenic
CGCCCAATATGCGTTGTTGA+TGG 0.373696 8.3:-47118353 MS.gene007901:intron
TACCATCAACAACGCATATT+GGG 0.375156 8.3:+47118351 None:intergenic
TGTTTAACAACCACACTTGT+TGG 0.380597 8.3:+47120512 None:intergenic
GTAGTTGCGAATATGATAAT+GGG 0.385391 8.3:-47119248 MS.gene007901:CDS
GAAGATAAAAGCACGGAAAC+AGG 0.385837 8.3:+47118418 None:intergenic
ACCAAAACCATATATGCATT+TGG 0.386079 8.3:+47119614 None:intergenic
ACCAATGACTTGGAAATATC+AGG 0.386215 8.3:+47120446 None:intergenic
ATATATCCAATGAAATAAAT+GGG 0.386689 8.3:-47120067 MS.gene007901:CDS
TCCACACCACATAACACTTT+GGG 0.400479 8.3:+47119208 None:intergenic
GTGATAAATCTCAACTATAT+CGG 0.403435 8.3:+47119806 None:intergenic
TGGTGAATGGGTTGACTATC+CGG 0.405927 8.3:-47120363 MS.gene007901:CDS
TTATCATATTCGCAACTACT+TGG 0.410566 8.3:+47119252 None:intergenic
CGGTTACCCACCCTTCTGTC+TGG 0.418048 8.3:-47119578 MS.gene007901:intron
CTTACAGGAATGAGTTCCTT+GGG 0.423013 8.3:-47119840 MS.gene007901:CDS
AACTTCACCAAATGACTTTG+TGG 0.425149 8.3:+47120598 None:intergenic
ACAAAGAATGTAAAAGTTGT+TGG 0.426209 8.3:-47119996 MS.gene007901:CDS
GATAAACCCACAAAGTCATT+TGG 0.432226 8.3:-47120605 MS.gene007901:CDS
CTCTTTAGAACAAGCAAGCC+AGG 0.436926 8.3:+47119689 None:intergenic
GGAACATCTGACTGGAGTTT+CGG 0.440641 8.3:-47120537 MS.gene007901:CDS
CGTTTGATGTTCTATAAGAA+TGG 0.440910 8.3:-47120383 MS.gene007901:CDS
CATGCTATGACTAACAAAAT+GGG 0.440985 8.3:-47119972 MS.gene007901:CDS
TTCCACACCACATAACACTT+TGG 0.442208 8.3:+47119207 None:intergenic
AAAGGCAGCCGAGCGGAACT+TGG 0.442936 8.3:+47118448 None:intergenic
AACCTATTGCGTGGATTGAT+GGG 0.446816 8.3:-47120208 MS.gene007901:CDS
TGTTAGTTTCAAGTCCCCTT+TGG 0.454712 8.3:-47119148 MS.gene007901:CDS
TCTTGTGATGTTGACGGAAG+TGG 0.460329 8.3:-47119351 MS.gene007901:CDS
AACATAGAGCTTCTTCGTCC+TGG 0.464831 8.3:-47119291 MS.gene007901:CDS
ACTTCACCAAATGACTTTGT+GGG 0.468146 8.3:+47120599 None:intergenic
GTTAAACAAATGAAGTTGGC+TGG 0.470078 8.3:-47120497 MS.gene007901:CDS
AGAGGAATTGTCAACAATGA+TGG 0.473725 8.3:-47119670 MS.gene007901:CDS
TTGTTGCATCATCAGACTCT+CGG 0.474808 8.3:+47120015 None:intergenic
TCTTACAGGAATGAGTTCCT+TGG 0.475724 8.3:-47119841 MS.gene007901:CDS
AGTCAGATGTTCCACACATC+GGG 0.481407 8.3:+47120547 None:intergenic
TAATCATTTAAATCTATGTC+TGG 0.481642 8.3:+47119915 None:intergenic
CACTCAATCAAAAGCGAAAG+AGG 0.483070 8.3:-47120574 MS.gene007901:CDS
TCCCCATCAATCCACGCAAT+AGG 0.483311 8.3:+47120206 None:intergenic
AAGCTAATGTTCGTTATGCC+TGG 0.486372 8.3:-47119707 MS.gene007901:CDS
GTTGAGATTTATCACAGCTC+AGG 0.487183 8.3:-47119798 MS.gene007901:CDS
TCACCTTCTTGTGATGTTGA+CGG 0.489833 8.3:-47119357 MS.gene007901:CDS
AAGCAGGTTGATATCACAAA+AGG 0.489976 8.3:-47119741 MS.gene007901:CDS
ATCTAATAATATAAGGGAGC+AGG 0.492310 8.3:-47120138 MS.gene007901:CDS
CTGGCTTGCTTGTTCTAAAG+AGG 0.492645 8.3:-47119688 MS.gene007901:CDS
GGACGAAGTTGTTTACTGCC+AGG 0.505635 8.3:+47119273 None:intergenic
GTCGATAAGAAACATAATAT+GGG 0.515113 8.3:+47118375 None:intergenic
GTTGCAGTTATTCCAAAAGC+AGG 0.517184 8.3:-47119757 MS.gene007901:CDS
TAAAAGCACGGAAACAGGAA+TGG 0.522808 8.3:+47118423 None:intergenic
ACCAAGTCAACCACATCCTC+CGG 0.524846 8.3:+47120344 None:intergenic
GTTCTATAAGAATGGTGAAT+GGG 0.532062 8.3:-47120375 MS.gene007901:CDS
ACGGAAACAGGAATGGGAAA+AGG 0.532145 8.3:+47118430 None:intergenic
AAAAGATTTCAAAATCAAGA+AGG 0.532698 8.3:-47120318 MS.gene007901:CDS
GTTGTAGAGGTAGAGTTAGA+TGG 0.534366 8.3:-47120293 MS.gene007901:CDS
TCCGGAGGATGTGGTTGACT+TGG 0.536069 8.3:-47120345 MS.gene007901:CDS
GGTTGTTAAACAAATGAAGT+TGG 0.537727 8.3:-47120501 MS.gene007901:CDS
GGAAGGAACTACGTTTCTCA+TGG 0.541388 8.3:+47118396 None:intergenic
TTGCAGAGACCACAAGGTGG+TGG 0.542541 8.3:-47118004 MS.gene007901:intron
ATAATAACTGACCAATGACT+TGG 0.544389 8.3:+47120436 None:intergenic
CTTGAAACTAACAACGAACT+CGG 0.544484 8.3:+47119158 None:intergenic
AATCAAGAAGGCAGTTGTAG+AGG 0.545073 8.3:-47120306 MS.gene007901:CDS
TGTTCTATAAGAATGGTGAA+TGG 0.545690 8.3:-47120376 MS.gene007901:CDS
TTGAAACTAACAACGAACTC+GGG 0.546904 8.3:+47119159 None:intergenic
AAAAGCACGGAAACAGGAAT+GGG 0.553577 8.3:+47118424 None:intergenic
GATATCACAAAAGGAGTTCG+AGG 0.562997 8.3:-47119732 MS.gene007901:CDS
TCGGCTATACTTTCTTAACA+TGG 0.564068 8.3:+47120034 None:intergenic
TCAAAGTTGAGGTCGACTGT+TGG 0.566856 8.3:-47118223 MS.gene007901:CDS
GGCTTCTTGCAGAGACCACA+AGG 0.567056 8.3:-47118010 MS.gene007901:intron
AATATACAATGTTGTATCCA+AGG 0.569110 8.3:-47118179 MS.gene007901:intron
ATGATTTCATGTCAAAGTTG+AGG 0.572626 8.3:-47118234 MS.gene007901:CDS
ATCCAATGAAATAAATGGGG+TGG 0.575535 8.3:-47120063 MS.gene007901:CDS
TAATAATATAAGGGAGCAGG+AGG 0.582589 8.3:-47120135 MS.gene007901:CDS
ATGATAACTAACCAGACAGA+AGG 0.584024 8.3:+47119567 None:intergenic
CAGTCAGATGTTCCACACAT+CGG 0.585154 8.3:+47120546 None:intergenic
GGTTGACTATCCGGAGGATG+TGG 0.587191 8.3:-47120354 MS.gene007901:CDS
GCCCAAAGTGTTATGTGGTG+TGG 0.606900 8.3:-47119209 MS.gene007901:CDS
AACTAACCAGACAGAAGGGT+GGG 0.608913 8.3:+47119572 None:intergenic
ACATTTGATCCACCACCTTG+TGG 0.609281 8.3:+47117995 None:intergenic
ATCGGACTTGCTAATGCCCA+AGG 0.611503 8.3:+47119824 None:intergenic
GTTTGCAACAACCTATTGCG+TGG 0.612498 8.3:-47120217 MS.gene007901:CDS
CGATGTGTGGAACATCTGAC+TGG 0.613009 8.3:-47120545 MS.gene007901:CDS
ATAAGAAACATAATATGGGA+AGG 0.614438 8.3:+47118379 None:intergenic
AAAGAGGGATACCCGATGTG+TGG 0.622704 8.3:-47120558 MS.gene007901:CDS
ACCTATTGCGTGGATTGATG+GGG 0.626629 8.3:-47120207 MS.gene007901:CDS
GAAGAACTCCAAGTTCCGCT+CGG 0.626974 8.3:-47118456 MS.gene007901:CDS
ATATCACAAAAGGAGTTCGA+GGG 0.628195 8.3:-47119731 MS.gene007901:CDS
ACTCAATCAAAAGCGAAAGA+GGG 0.631027 8.3:-47120573 MS.gene007901:CDS
TCCTATGTCGTGTCATAATG+GGG 0.633571 8.3:-47119314 MS.gene007901:CDS
TGATAACTAACCAGACAGAA+GGG 0.637477 8.3:+47119568 None:intergenic
ATGCTATGACTAACAAAATG+GGG 0.641198 8.3:-47119971 MS.gene007901:CDS
AAACCATATATGCATTTGGA+CGG 0.642667 8.3:+47119618 None:intergenic
CTTCCGTCAACATCACAAGA+AGG 0.653045 8.3:+47119354 None:intergenic
TTGCGAATATGATAATGGGG+TGG 0.654141 8.3:-47119244 MS.gene007901:CDS
CAGGAAAGTCAATGCAAACA+CGG 0.655656 8.3:-47119779 MS.gene007901:CDS
ATTGCGTGGATTGATGGGGA+AGG 0.656743 8.3:-47120203 MS.gene007901:CDS
TATATCCAATGAAATAAATG+GGG 0.657738 8.3:-47120066 MS.gene007901:CDS
ATAAACGTCAAGCAAGAGTG+AGG 0.662929 8.3:-47117971 None:intergenic
TCTCATGGAAGATAAAAGCA+CGG 0.663204 8.3:+47118411 None:intergenic
TCAATGCCCAAAGTGTTATG+TGG 0.664510 8.3:-47119214 MS.gene007901:CDS
AGGGTATCGGCATTCTACAG+TGG 0.671871 8.3:-47118791 MS.gene007901:CDS
TCCCCATTATGACACGACAT+AGG 0.673955 8.3:+47119313 None:intergenic
GGTAGAGTTAGATGGCCAAG+AGG 0.674190 8.3:-47120285 MS.gene007901:CDS
TAGTTGCGAATATGATAATG+GGG 0.678638 8.3:-47119247 MS.gene007901:CDS
AGTTTCGGAACCAACAAGTG+TGG 0.680410 8.3:-47120522 MS.gene007901:CDS
TATCACAAAAGGAGTTCGAG+GGG 0.685383 8.3:-47119730 MS.gene007901:CDS
TAACTAACCAGACAGAAGGG+TGG 0.705316 8.3:+47119571 None:intergenic
AATAATATAAGGGAGCAGGA+GGG 0.718446 8.3:-47120134 MS.gene007901:CDS
AATGGGAAAAGGCAGCCGAG+CGG 0.730975 8.3:+47118441 None:intergenic
TTCTTGCAGAGACCACAAGG+TGG 0.768196 8.3:-47118007 MS.gene007901:intron
TGAATGGGTTGACTATCCGG+AGG 0.807342 8.3:-47120360 MS.gene007901:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAAAATCTAATAATATAA+GGG - chr8.3:47118440-47118459 MS.gene007901:CDS 10.0%
!!! TTTTTCTACAAATATTTATT+TGG - chr8.3:47120442-47120461 MS.gene007901:CDS 10.0%
!! ATATATCCAATGAAATAAAT+GGG - chr8.3:47118517-47118536 MS.gene007901:intron 15.0%
!! CTGAAAAATCTAATAATATA+AGG - chr8.3:47118439-47118458 MS.gene007901:CDS 15.0%
!! TGAATCTTTATATGAAAAAT+TGG - chr8.3:47118695-47118714 MS.gene007901:intron 15.0%
!!! AAAAAATAAATTTTGTACCT+TGG + chr8.3:47120425-47120444 None:intergenic 15.0%
!!! AATATGTTATGCTTAAATTT+TGG - chr8.3:47120495-47120514 MS.gene007901:CDS 15.0%
!!! GTTATCATAGATTATTTTTT+TGG - chr8.3:47119168-47119187 MS.gene007901:CDS 15.0%
!!! TATTTTAACTATAAGAAAAG+TGG - chr8.3:47118168-47118187 MS.gene007901:intron 15.0%
!!! TTCTAATATTTTTTATCTTC+TGG - chr8.3:47119947-47119966 MS.gene007901:CDS 15.0%
!! AAAAGATTTCAAAATCAAGA+AGG - chr8.3:47118266-47118285 MS.gene007901:intron 20.0%
!! ATTGATATTTCTTTCAACAA+CGG - chr8.3:47119690-47119709 MS.gene007901:CDS 20.0%
!! CATATATCCAATGAAATAAA+TGG - chr8.3:47118516-47118535 MS.gene007901:intron 20.0%
!! TAAATGAGAGTAAGAAAAAA+GGG - chr8.3:47119774-47119793 MS.gene007901:CDS 20.0%
!! TAATCATTTAAATCTATGTC+TGG + chr8.3:47118672-47118691 None:intergenic 20.0%
!! TATATCCAATGAAATAAATG+GGG - chr8.3:47118518-47118537 MS.gene007901:intron 20.0%
!! TTAAATGAGAGTAAGAAAAA+AGG - chr8.3:47119773-47119792 MS.gene007901:CDS 20.0%
!! TTTATATGAAAAATTGGATG+TGG - chr8.3:47118701-47118720 MS.gene007901:intron 20.0%
!!! ACGACATAATTTTTTTCTAA+AGG + chr8.3:47119484-47119503 None:intergenic 20.0%
!!! ATCTTTTGATATTTATCTTC+TGG - chr8.3:47120006-47120025 MS.gene007901:CDS 20.0%
!!! TACATTCATGTGAAATATTT+TGG - chr8.3:47119976-47119995 MS.gene007901:CDS 20.0%
!!! TGTTTTTTTTTGTTTTGAAC+AGG - chr8.3:47119740-47119759 MS.gene007901:CDS 20.0%
!!! TTTAAGACATAGACATAAAT+TGG + chr8.3:47120271-47120290 None:intergenic 20.0%
!!! TTTTTCCCTAAATTTTTTGT+TGG - chr8.3:47118411-47118430 MS.gene007901:CDS 20.0%
! AACCAAAATTGTTTGGATAA+AGG + chr8.3:47120062-47120081 None:intergenic 25.0%
! AATATACAATGTTGTATCCA+AGG - chr8.3:47120405-47120424 MS.gene007901:CDS 25.0%
! ACAAAGAATGTAAAAGTTGT+TGG - chr8.3:47118588-47118607 MS.gene007901:intron 25.0%
! ATAAGAAACATAATATGGGA+AGG + chr8.3:47120208-47120227 None:intergenic 25.0%
! CAGAACCAACAAAAAATTTA+GGG + chr8.3:47118419-47118438 None:intergenic 25.0%
! GCAATAAAGGAAAACATTAA+AGG + chr8.3:47120040-47120059 None:intergenic 25.0%
! GTCGATAAGAAACATAATAT+GGG + chr8.3:47120212-47120231 None:intergenic 25.0%
! GTGATAAATCTCAACTATAT+CGG + chr8.3:47118781-47118800 None:intergenic 25.0%
!! TTATAGAACATCAAACGTTT+TGG + chr8.3:47118198-47118217 None:intergenic 25.0%
!!! GAAAAGTGTTACATATCAAT+TGG + chr8.3:47119605-47119624 None:intergenic 25.0%
!!! TATTTTTTTGGATTTCGCAA+AGG - chr8.3:47119180-47119199 MS.gene007901:CDS 25.0%
AAACCATATATGCATTTGGA+CGG + chr8.3:47118969-47118988 None:intergenic 30.0%
ACATTACCTTCAAAAACCAA+AGG + chr8.3:47119455-47119474 None:intergenic 30.0%
ACCAAAACCATATATGCATT+TGG + chr8.3:47118973-47118992 None:intergenic 30.0%
AGTAGTTGCGAATATGATAA+TGG - chr8.3:47119335-47119354 MS.gene007901:CDS 30.0%
ATAATAACTGACCAATGACT+TGG + chr8.3:47118151-47118170 None:intergenic 30.0%
ATCTAATAATATAAGGGAGC+AGG - chr8.3:47118446-47118465 MS.gene007901:CDS 30.0%
ATGATTTCATGTCAAAGTTG+AGG - chr8.3:47120350-47120369 MS.gene007901:CDS 30.0%
ATGCTATGACTAACAAAATG+GGG - chr8.3:47118613-47118632 MS.gene007901:intron 30.0%
ATTACCTTCAAAAACCAAAG+GGG + chr8.3:47119453-47119472 None:intergenic 30.0%
CATGCTATGACTAACAAAAT+GGG - chr8.3:47118612-47118631 MS.gene007901:intron 30.0%
CATTACCTTCAAAAACCAAA+GGG + chr8.3:47119454-47119473 None:intergenic 30.0%
CGTCGATAAGAAACATAATA+TGG + chr8.3:47120213-47120232 None:intergenic 30.0%
CGTTTGATGTTCTATAAGAA+TGG - chr8.3:47118201-47118220 MS.gene007901:CDS 30.0%
GCAGAACCAACAAAAAATTT+AGG + chr8.3:47118420-47118439 None:intergenic 30.0%
GGTTGTTAAACAAATGAAGT+TGG - chr8.3:47118083-47118102 MS.gene007901:intron 30.0%
GTAGTTGCGAATATGATAAT+GGG - chr8.3:47119336-47119355 MS.gene007901:CDS 30.0%
GTTCTATAAGAATGGTGAAT+GGG - chr8.3:47118209-47118228 MS.gene007901:CDS 30.0%
TACCACAAACCAAAATTGTT+TGG + chr8.3:47120069-47120088 None:intergenic 30.0%
TATGTCTCCTAATGTTTAGT+TGG - chr8.3:47120553-47120572 MS.gene007901:CDS 30.0%
TCATGCTATGACTAACAAAA+TGG - chr8.3:47118611-47118630 MS.gene007901:intron 30.0%
TCATGTGGTTCTTTCTTATT+AGG + chr8.3:47118486-47118505 None:intergenic 30.0%
TGTTCTATAAGAATGGTGAA+TGG - chr8.3:47118208-47118227 MS.gene007901:CDS 30.0%
TGTTTGGATAAAGGCAATAA+AGG + chr8.3:47120053-47120072 None:intergenic 30.0%
TTAAGCGCTTTACTCTAATT+CGG - chr8.3:47119631-47119650 MS.gene007901:CDS 30.0%
TTATCATATTCGCAACTACT+TGG + chr8.3:47119335-47119354 None:intergenic 30.0%
! AGAGTAAGAAAAAAGGGTAT+CGG - chr8.3:47119780-47119799 MS.gene007901:CDS 30.0%
! TAGTTGCGAATATGATAATG+GGG - chr8.3:47119337-47119356 MS.gene007901:CDS 30.0%
! TCCAAATGCATATATGGTTT+TGG - chr8.3:47118969-47118988 MS.gene007901:intron 30.0%
! TGCCTTTATCCAAACAATTT+TGG - chr8.3:47120057-47120076 MS.gene007901:CDS 30.0%
! TTCATGAGTTTTGCTTCTTA+TGG - chr8.3:47119830-47119849 MS.gene007901:CDS 30.0%
! TTGTCAACAATGATGGAATA+TGG - chr8.3:47118921-47118940 MS.gene007901:intron 30.0%
!!! ATATGTAGTTTTGTCTCATG+TGG + chr8.3:47118501-47118520 None:intergenic 30.0%
!!! ATCCAAACAATTTTGGTTTG+TGG - chr8.3:47120064-47120083 MS.gene007901:CDS 30.0%
AAAAATCTAGCACAACCTCT+TGG + chr8.3:47118317-47118336 None:intergenic 35.0%
AACTTCACCAAATGACTTTG+TGG + chr8.3:47117989-47118008 None:intergenic 35.0%
AATAATATAAGGGAGCAGGA+GGG - chr8.3:47118450-47118469 MS.gene007901:CDS 35.0%
ACTCAATCAAAAGCGAAAGA+GGG - chr8.3:47118011-47118030 MS.gene007901:intron 35.0%
ACTTCACCAAATGACTTTGT+GGG + chr8.3:47117988-47118007 None:intergenic 35.0%
AGAGGAATTGTCAACAATGA+TGG - chr8.3:47118914-47118933 MS.gene007901:intron 35.0%
ATACCATCAACAACGCATAT+TGG + chr8.3:47120237-47120256 None:intergenic 35.0%
ATATCACAAAAGGAGTTCGA+GGG - chr8.3:47118853-47118872 MS.gene007901:intron 35.0%
ATCCAATGAAATAAATGGGG+TGG - chr8.3:47118521-47118540 MS.gene007901:intron 35.0%
ATCCACCCCATTTATTTCAT+TGG + chr8.3:47118526-47118545 None:intergenic 35.0%
ATGATAACTAACCAGACAGA+AGG + chr8.3:47119020-47119039 None:intergenic 35.0%
CAAGAAGCCAACTAAACATT+AGG + chr8.3:47120563-47120582 None:intergenic 35.0%
CTTGAAACTAACAACGAACT+CGG + chr8.3:47119429-47119448 None:intergenic 35.0%
GATAAACCCACAAAGTCATT+TGG - chr8.3:47117979-47117998 MS.gene007901:CDS 35.0%
GTAAAAGCTACTAGTGTTTC+TGG - chr8.3:47120097-47120116 MS.gene007901:CDS 35.0%
GTTAAACAAATGAAGTTGGC+TGG - chr8.3:47118087-47118106 MS.gene007901:intron 35.0%
TAATAATATAAGGGAGCAGG+AGG - chr8.3:47118449-47118468 MS.gene007901:CDS 35.0%
TAATTATCACTGAAGCGTGA+AGG - chr8.3:47119562-47119581 MS.gene007901:intron 35.0%
TACCATCAACAACGCATATT+GGG + chr8.3:47120236-47120255 None:intergenic 35.0%
TCCTGATATTTCCAAGTCAT+TGG - chr8.3:47118137-47118156 MS.gene007901:intron 35.0%
TCGGCTATACTTTCTTAACA+TGG + chr8.3:47118553-47118572 None:intergenic 35.0%
TCTCATGGAAGATAAAAGCA+CGG + chr8.3:47120176-47120195 None:intergenic 35.0%
TGATAACTAACCAGACAGAA+GGG + chr8.3:47119019-47119038 None:intergenic 35.0%
TGTTTAACAACCACACTTGT+TGG + chr8.3:47118075-47118094 None:intergenic 35.0%
TTCCTATGTCGTGTCATAAT+GGG - chr8.3:47119269-47119288 MS.gene007901:CDS 35.0%
TTGAAACTAACAACGAACTC+GGG + chr8.3:47119428-47119447 None:intergenic 35.0%
! ACCAATGACTTGGAAATATC+AGG + chr8.3:47118141-47118160 None:intergenic 35.0%
! TTGTGATATCAACCTGCTTT+TGG + chr8.3:47118842-47118861 None:intergenic 35.0%
!! AAGCAGGTTGATATCACAAA+AGG - chr8.3:47118843-47118862 MS.gene007901:intron 35.0%
AAGAAGGTGAACTGTGAACA+TGG + chr8.3:47119217-47119236 None:intergenic 40.0%
AAGCTAATGTTCGTTATGCC+TGG - chr8.3:47118877-47118896 MS.gene007901:intron 40.0%
AATCAAGAAGGCAGTTGTAG+AGG - chr8.3:47118278-47118297 MS.gene007901:intron 40.0%
AGAAGGTGAACTGTGAACAT+GGG + chr8.3:47119216-47119235 None:intergenic 40.0%
CACTCAATCAAAAGCGAAAG+AGG - chr8.3:47118010-47118029 MS.gene007901:intron 40.0%
CAGGAAAGTCAATGCAAACA+CGG - chr8.3:47118805-47118824 MS.gene007901:CDS 40.0%
CTTACAGGAATGAGTTCCTT+GGG - chr8.3:47118744-47118763 MS.gene007901:intron 40.0%
GATATCACAAAAGGAGTTCG+AGG - chr8.3:47118852-47118871 MS.gene007901:intron 40.0%
GCACAGAAGATGTTTCTTAC+AGG - chr8.3:47118729-47118748 MS.gene007901:intron 40.0%
GTTCCTATGTCGTGTCATAA+TGG - chr8.3:47119268-47119287 MS.gene007901:CDS 40.0%
GTTGAGATTTATCACAGCTC+AGG - chr8.3:47118786-47118805 MS.gene007901:CDS 40.0%
GTTGCAGTTATTCCAAAAGC+AGG - chr8.3:47118827-47118846 MS.gene007901:intron 40.0%
GTTGTAGAGGTAGAGTTAGA+TGG - chr8.3:47118291-47118310 MS.gene007901:intron 40.0%
TATCACAAAAGGAGTTCGAG+GGG - chr8.3:47118854-47118873 MS.gene007901:intron 40.0%
TCACCTTCTTGTGATGTTGA+CGG - chr8.3:47119227-47119246 MS.gene007901:CDS 40.0%
TCCACACCACATAACACTTT+GGG + chr8.3:47119379-47119398 None:intergenic 40.0%
TCCTATGTCGTGTCATAATG+GGG - chr8.3:47119270-47119289 MS.gene007901:CDS 40.0%
TCTCCGTCCAAATGCATATA+TGG - chr8.3:47118963-47118982 MS.gene007901:intron 40.0%
TCTTACAGGAATGAGTTCCT+TGG - chr8.3:47118743-47118762 MS.gene007901:intron 40.0%
TTCCACACCACATAACACTT+TGG + chr8.3:47119380-47119399 None:intergenic 40.0%
TTGTTGCATCATCAGACTCT+CGG + chr8.3:47118572-47118591 None:intergenic 40.0%
! AAAAGCACGGAAACAGGAAT+GGG + chr8.3:47120163-47120182 None:intergenic 40.0%
! AACCTATTGCGTGGATTGAT+GGG - chr8.3:47118376-47118395 MS.gene007901:CDS 40.0%
! ACACTAGTAGCTTTTACCTG+AGG + chr8.3:47120094-47120113 None:intergenic 40.0%
! GAAGATAAAAGCACGGAAAC+AGG + chr8.3:47120169-47120188 None:intergenic 40.0%
! TAAAAGCACGGAAACAGGAA+TGG + chr8.3:47120164-47120183 None:intergenic 40.0%
! TCAATGCCCAAAGTGTTATG+TGG - chr8.3:47119370-47119389 MS.gene007901:intron 40.0%
! TGTTAGTTTCAAGTCCCCTT+TGG - chr8.3:47119436-47119455 MS.gene007901:intron 40.0%
!! TTGCGAATATGATAATGGGG+TGG - chr8.3:47119340-47119359 MS.gene007901:CDS 40.0%
!!! AAGTCCCCTTTGGTTTTTGA+AGG - chr8.3:47119446-47119465 MS.gene007901:intron 40.0%
!!! TTTTGGTGTTCATCTTGCAG+CGG - chr8.3:47118986-47119005 MS.gene007901:intron 40.0%
AACATAGAGCTTCTTCGTCC+TGG - chr8.3:47119293-47119312 MS.gene007901:CDS 45.0%
AACTAACCAGACAGAAGGGT+GGG + chr8.3:47119015-47119034 None:intergenic 45.0%
ACATTTGATCCACCACCTTG+TGG + chr8.3:47120592-47120611 None:intergenic 45.0%
ACGGAAACAGGAATGGGAAA+AGG + chr8.3:47120157-47120176 None:intergenic 45.0%
AGTCAGATGTTCCACACATC+GGG + chr8.3:47118040-47118059 None:intergenic 45.0%
AGTTTCGGAACCAACAAGTG+TGG - chr8.3:47118062-47118081 MS.gene007901:intron 45.0%
CAGTCAGATGTTCCACACAT+CGG + chr8.3:47118041-47118060 None:intergenic 45.0%
CTTCCGTCAACATCACAAGA+AGG + chr8.3:47119233-47119252 None:intergenic 45.0%
GGAACATCTGACTGGAGTTT+CGG - chr8.3:47118047-47118066 MS.gene007901:intron 45.0%
GGAAGGAACTACGTTTCTCA+TGG + chr8.3:47120191-47120210 None:intergenic 45.0%
GTTTGCAACAACCTATTGCG+TGG - chr8.3:47118367-47118386 MS.gene007901:CDS 45.0%
TAACTAACCAGACAGAAGGG+TGG + chr8.3:47119016-47119035 None:intergenic 45.0%
TCAAAGTTGAGGTCGACTGT+TGG - chr8.3:47120361-47120380 MS.gene007901:CDS 45.0%
TCCCCATTATGACACGACAT+AGG + chr8.3:47119274-47119293 None:intergenic 45.0%
TCTTGTGATGTTGACGGAAG+TGG - chr8.3:47119233-47119252 MS.gene007901:CDS 45.0%
! ACCTATTGCGTGGATTGATG+GGG - chr8.3:47118377-47118396 MS.gene007901:CDS 45.0%
! CAACCTATTGCGTGGATTGA+TGG - chr8.3:47118375-47118394 MS.gene007901:CDS 45.0%
!! CTCTTTAGAACAAGCAAGCC+AGG + chr8.3:47118898-47118917 None:intergenic 45.0%
!! CTGGCTTGCTTGTTCTAAAG+AGG - chr8.3:47118896-47118915 MS.gene007901:intron 45.0%
!! TGGTGAATGGGTTGACTATC+CGG - chr8.3:47118221-47118240 MS.gene007901:CDS 45.0%
!! TTTGGTTTGTGGTATGCCTC+AGG - chr8.3:47120075-47120094 MS.gene007901:CDS 45.0%
AAAGAGGGATACCCGATGTG+TGG - chr8.3:47118026-47118045 MS.gene007901:intron 50.0%
ACCAAGTCAACCACATCCTC+CGG + chr8.3:47118243-47118262 None:intergenic 50.0%
CGATGTGTGGAACATCTGAC+TGG - chr8.3:47118039-47118058 MS.gene007901:intron 50.0%
CGCCCAATATGCGTTGTTGA+TGG - chr8.3:47120231-47120250 MS.gene007901:CDS 50.0%
GAAGAACTCCAAGTTCCGCT+CGG - chr8.3:47120128-47120147 MS.gene007901:CDS 50.0%
GGACGAAGTTGTTTACTGCC+AGG + chr8.3:47119314-47119333 None:intergenic 50.0%
GGTAGAGTTAGATGGCCAAG+AGG - chr8.3:47118299-47118318 MS.gene007901:intron 50.0%
TCCCCATCAATCCACGCAAT+AGG + chr8.3:47118381-47118400 None:intergenic 50.0%
TTCTTGCAGAGACCACAAGG+TGG - chr8.3:47120577-47120596 MS.gene007901:CDS 50.0%
! ATTGCGTGGATTGATGGGGA+AGG - chr8.3:47118381-47118400 MS.gene007901:CDS 50.0%
! GCCCAAAGTGTTATGTGGTG+TGG - chr8.3:47119375-47119394 MS.gene007901:intron 50.0%
!! AGGGTATCGGCATTCTACAG+TGG - chr8.3:47119793-47119812 MS.gene007901:CDS 50.0%
!! ATCGGACTTGCTAATGCCCA+AGG + chr8.3:47118763-47118782 None:intergenic 50.0%
!! TGAATGGGTTGACTATCCGG+AGG - chr8.3:47118224-47118243 MS.gene007901:CDS 50.0%
AATGGGAAAAGGCAGCCGAG+CGG + chr8.3:47120146-47120165 None:intergenic 55.0%
GGCTTCTTGCAGAGACCACA+AGG - chr8.3:47120574-47120593 MS.gene007901:CDS 55.0%
GGTTGACTATCCGGAGGATG+TGG - chr8.3:47118230-47118249 MS.gene007901:CDS 55.0%
TCCGGAGGATGTGGTTGACT+TGG - chr8.3:47118239-47118258 MS.gene007901:CDS 55.0%
TTGCAGAGACCACAAGGTGG+TGG - chr8.3:47120580-47120599 MS.gene007901:CDS 55.0%
AAAGGCAGCCGAGCGGAACT+TGG + chr8.3:47120139-47120158 None:intergenic 60.0%
CGGTTACCCACCCTTCTGTC+TGG - chr8.3:47119006-47119025 MS.gene007901:intron 60.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 47117973 47120633 47117973 ID=MS.gene007901
chr8.3 mRNA 47117973 47120633 47117973 ID=MS.gene007901.t1;Parent=MS.gene007901
chr8.3 exon 47119579 47120633 47119579 ID=MS.gene007901.t1.exon1;Parent=MS.gene007901.t1
chr8.3 CDS 47119579 47120633 47119579 ID=cds.MS.gene007901.t1;Parent=MS.gene007901.t1
chr8.3 exon 47119139 47119380 47119139 ID=MS.gene007901.t1.exon2;Parent=MS.gene007901.t1
chr8.3 CDS 47119139 47119380 47119139 ID=cds.MS.gene007901.t1;Parent=MS.gene007901.t1
chr8.3 exon 47118786 47118844 47118786 ID=MS.gene007901.t1.exon3;Parent=MS.gene007901.t1
chr8.3 CDS 47118786 47118844 47118786 ID=cds.MS.gene007901.t1;Parent=MS.gene007901.t1
chr8.3 exon 47118354 47118509 47118354 ID=MS.gene007901.t1.exon4;Parent=MS.gene007901.t1
chr8.3 CDS 47118354 47118509 47118354 ID=cds.MS.gene007901.t1;Parent=MS.gene007901.t1
chr8.3 exon 47118180 47118275 47118180 ID=MS.gene007901.t1.exon5;Parent=MS.gene007901.t1
chr8.3 CDS 47118180 47118275 47118180 ID=cds.MS.gene007901.t1;Parent=MS.gene007901.t1
chr8.3 exon 47117973 47118020 47117973 ID=MS.gene007901.t1.exon6;Parent=MS.gene007901.t1
chr8.3 CDS 47117973 47118020 47117973 ID=cds.MS.gene007901.t1;Parent=MS.gene007901.t1
Gene Sequence

>MS.gene007901

ATGGAAGATAAACCCACAAAGTCATTTGGTGAAGTTGCACTCAATCAAAAGCGAAAGAGGGATACCCGATGTGTGGAACATCTGACTGGAGTTTCGGAACCAACAAGTGTGGTTGTTAAACAAATGAAGTTGGCTGGAGATGTATGCAAATCAGATGACTCTTGTCCTGATATTTCCAAGTCATTGGTCAGTTATTATTTTAACTATAAGAAAAGTGGAATACCAAAACGTTTGATGTTCTATAAGAATGGTGAATGGGTTGACTATCCGGAGGATGTGGTTGACTTGGTTAAAAAAGATTTCAAAATCAAGAAGGCAGTTGTAGAGGTAGAGTTAGATGGCCAAGAGGTTGTGCTAGATTTTTTGCATATGTATCATGTGAATTTAAAAACATGTTTGCAACAACCTATTGCGTGGATTGATGGGGAAGGAAACTATTTTTTCCCTAAATTTTTTGTTGGTTCTGCTGAAAAATCTAATAATATAAGGGAGCAGGAGGGTGAAGAAAATCCTAATAAGAAAGAACCACATGAGACAAAACTACATATATCCAATGAAATAAATGGGGTGGATGAATCCATGTTAAGAAAGTATAGCCGAGAGTCTGATGATGCAACAAAGAATGTAAAAGTTGTTGGTCATGCTATGACTAACAAAATGGGGATTCAAAATTTTGCTATAGATATTAACAAAGAGCCAGACATAGATTTAAATGATTATTCTGAATCTTTATATGAAAAATTGGATGTGGATTCTGCACAGAAGATGTTTCTTACAGGAATGAGTTCCTTGGGCATTAGCAAGTCCGATATAGTTGAGATTTATCACAGCTCAGGAAAGTCAATGCAAACACGGTTGCAGTTATTCCAAAAGCAGGTTGATATCACAAAAGGAGTTCGAGGGGAAGCTAATGTTCGTTATGCCTGGCTTGCTTGTTCTAAAGAGGAATTGTCAACAATGATGGAATATGGACTTAGTCACTATAAACTATCTCCGTCCAAATGCATATATGGTTTTGGTGTTCATCTTGCAGCGGTTACCCACCCTTCTGTCTGGTTAGTTATCATATGATCAACATTGAACTTCATACATCATCATCATCATCATCATCATTATCATTATCATTATCATCATCATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATCATCATCTGATATGTTATCATAGATTATTTTTTTGGATTTCGCAAAGGATTTAGTTTTCCCATGTTCACAGTTCACCTTCTTGTGATGTTGACGGAAGTGGAATTAAGCATATGTTCCTATGTCGTGTCATAATGGGGAACATAGAGCTTCTTCGTCCTGGCAGTAAACAACTTCGTCCAAGTAGTTGCGAATATGATAATGGGGTGGATGACATTCAATGCCCAAAGTGTTATGTGGTGTGGAACATGAATATGAACACGCATATCTATCCCGAGTTCGTTGTTAGTTTCAAGTCCCCTTTGGTTTTTGAAGGTAATGTAATGTTCCTTTAGAAAAAAATTATGTCGTGTGTCAATGTTAGATATATGCTTTTGTATGATAACATGCTTTACATTTTAGCATTACATAATTATCACTGAAGCGTGAAGGAGTTAATCATTGACAAACCAATTGATATGTAACACTTTTCAACTTATTAAGCGCTTTACTCTAATTCGGCAAAATAATCATTTTTATATGTTGCTAAGTTGTATGATTGATATTTCTTTCAACAACGGAAAAATCTTCTTGATCACAACACTTGATGTTTTTTTTTGTTTTGAACAGGAAATATTTGTTTAAATGAGAGTAAGAAAAAAGGGTATCGGCATTCTACAGTGGACACTGTAAGCTTTTTCATGAGTTTTGCTTCTTATGGTTTTCTAGTTTTCTATGTAAAAGACAATGTTATCATCAATTTTTTTAACTGTTTTTAAAATCTAACTATGATTTATTTAGTGCACAACTTTGCATTCTAATATTTTTTATCTTCTGGTTTTAATACATTCATGTGAAATATTTTGGTGCATTCATCTTTTGATATTTATCTTCTGGTTTTTAATCCTTTAATGTTTTCCTTTATTGCCTTTATCCAAACAATTTTGGTTTGTGGTATGCCTCAGGTAAAAGCTACTAGTGTTTCTGGTAACATGAGAAGAACTCCAAGTTCCGCTCGGCTGCCTTTTCCCATTCCTGTTTCCGTGCTTTTATCTTCCATGAGAAACGTAGTTCCTTCCCATATTATGTTTCTTATCGACGCCCAATATGCGTTGTTGATGGTATGCAAATGATGTCCAATTTATGTCTATGTCTTAAATAGTAAAATATCACTAATGTATCATGTCGTGCTTGTGCAGTCGAATAAGATTTCACGTGATGATTTCATGTCAAAGTTGAGGTCGACTGTTGGAAATGATGTACTAAAATCTGTAATATACAATGTTGTATCCAAGGTACAAAATTTATTTTTTTTCTACAAATATTTATTTGGTTTGCTATATGTTTTGATCTTATCTCGTTAAATATGTTATGCTTAAATTTTGGATTGTGTAATCATATGATCTATCTCGAAATTTGTTTATGTCTCCTAATGTTTAGTTGGCTTCTTGCAGAGACCACAAGGTGGTGGATCAAATGTCATAAACGTCAAGCAAGAGTGA

Protein sequence

>MS.gene007901.t1

MEDKPTKSFGEVALNQKRKRDTRCVEHLTGVSEPTSVVVKQMKLAGDVCKSDDSCPDISKSLVSYYFNYKKSGIPKRLMFYKNGEWVDYPEDVVDLVKKDFKIKKAVVEVELDGQEVVLDFLHMYHVNLKTCLQQPIAWIDGEGNYFFPKFFVGSAEKSNNIREQEGEENPNKKEPHETKLHISNEINGVDESMLRKYSRESDDATKNVKVVGHAMTNKMGIQNFAIDINKEPDIDLNDYSESLYEKLDVDSAQKMFLTGMSSLGISKSDIVEIYHSSGKSMQTRLQLFQKQVDITKGVRGEANVRYAWLACSKEELSTMMEYGLSHYKLSPSKCIYGFGVHLAAVTHPSVCSPSCDVDGSGIKHMFLCRVIMGNIELLRPGSKQLRPSSCEYDNGVDDIQCPKCYVVWNMNMNTHIYPEFVVSFKSPLVFEGNICLNESKKKGYRHSTVDTVKATSVSGNMRRTPSSARLPFPIPVSVLLSSMRNVVPSHIMFLIDAQYALLMSNKISRDDFMSKLRSTVGNDVLKSVIYNVVSKRPQGGGSNVINVKQE