AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene34237


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34237.t1 MTR_7g011550 78.545 550 114 1 1 550 1 546 0.0 899
MS.gene34237.t1 MTR_1g112330 44.677 573 274 7 1 537 1 566 2.42e-154 454
MS.gene34237.t1 MTR_1g112330 44.834 571 273 8 1 537 1 563 4.21e-154 453
MS.gene34237.t1 MTR_5g032190 43.478 575 276 10 1 539 1 562 5.28e-150 442
MS.gene34237.t1 MTR_1g112330 49.351 462 198 6 1 433 1 455 9.46e-141 415
MS.gene34237.t1 MTR_5g032190 47.903 453 211 6 1 433 1 448 5.91e-135 401
MS.gene34237.t1 MTR_5g032190 47.903 453 211 6 1 433 1 448 2.75e-134 399
MS.gene34237.t1 MTR_5g029580 53.179 346 149 4 194 530 1 342 1.41e-120 360
MS.gene34237.t1 MTR_7g011880 59.211 152 37 3 358 509 60 186 1.39e-47 164
MS.gene34237.t1 MTR_7g011640 63.964 111 23 1 90 200 15 108 5.59e-37 134
MS.gene34237.t1 MTR_2g090130 49.333 150 41 2 254 403 103 217 7.10e-37 136
MS.gene34237.t1 MTR_2g090130 51.613 124 26 1 27 150 14 103 3.89e-30 117
MS.gene34237.t1 MTR_3g077870 30.612 294 162 8 251 540 61 316 1.37e-35 136
MS.gene34237.t1 MTR_4g105740 30.405 296 168 8 246 537 43 304 3.95e-34 132
MS.gene34237.t1 MTR_4g105740 30.508 295 167 8 246 536 43 303 5.62e-34 131
MS.gene34237.t1 MTR_8g088250 27.719 285 166 6 254 530 27 279 7.86e-28 113
MS.gene34237.t1 MTR_7g061850 44.882 127 61 1 184 310 6 123 5.01e-27 106
MS.gene34237.t1 MTR_7g061730 72.000 50 14 0 487 536 1 50 1.23e-16 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34237.t1 AT1G32230 35.676 555 316 10 11 530 15 563 9.84e-102 319
MS.gene34237.t1 AT1G32230 36.299 562 302 12 11 530 15 562 1.02e-101 318
MS.gene34237.t1 AT1G32230 36.299 562 302 12 11 530 15 562 1.39e-101 318
MS.gene34237.t1 AT1G32230 36.299 562 302 12 11 530 15 562 1.39e-101 318
MS.gene34237.t1 AT1G32230 36.299 562 302 12 11 530 15 562 1.39e-101 318
MS.gene34237.t1 AT1G32230 36.299 562 302 12 11 530 15 562 1.39e-101 318
MS.gene34237.t1 AT2G35510 35.714 504 270 10 58 526 71 555 3.58e-93 296
MS.gene34237.t1 AT2G35510 35.714 504 270 10 58 526 71 555 3.58e-93 296
MS.gene34237.t1 AT2G35510 39.796 392 194 8 58 426 71 443 2.25e-88 280
MS.gene34237.t1 AT1G23550 31.673 281 154 7 261 532 63 314 4.27e-35 134
MS.gene34237.t1 AT5G62520 28.028 289 168 5 244 526 42 296 4.67e-34 131
MS.gene34237.t1 AT1G70440 30.686 277 151 5 257 526 54 296 1.26e-32 127
MS.gene34237.t1 AT1G70440 30.686 277 151 5 257 526 54 296 1.26e-32 127
MS.gene34237.t1 AT5G62520 33.333 192 120 3 244 429 42 231 3.60e-28 113
MS.gene34237.t1 AT3G47720 30.126 239 123 6 298 536 117 311 1.20e-23 102

Find 122 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTGCTCCCTTATATTAT+TGG 0.156025 8.4:-47368186 None:intergenic
CATATATCCAATGAAATAAA+TGG 0.166586 8.4:+47368254 MS.gene34237:CDS
TCATGTGATTCTTTCTTATT+AGG 0.193411 8.4:-47368221 None:intergenic
GTAAAAGCTACTAGTGTTTC+TGG 0.207608 8.4:+47369795 MS.gene34237:CDS
TCATGCTATGACTAACAAAA+TGG 0.219540 8.4:+47368349 MS.gene34237:CDS
GCACAGAAAATGTTTCTTAC+AGG 0.228702 8.4:+47368467 MS.gene34237:CDS
TCCTGCTCCCTTATATTATT+GGG 0.230780 8.4:-47368185 None:intergenic
CATCGATAAGAAACATAATA+TGG 0.251384 8.4:-47369908 None:intergenic
AGAGGAATTGTCATCAATTA+TGG 0.254170 8.4:+47368652 MS.gene34237:CDS
TCTCCGTCCAAATGCTTATA+TGG 0.254526 8.4:+47368701 MS.gene34237:CDS
CTGAAGAACCCAATAATATA+AGG 0.257902 8.4:+47368177 MS.gene34237:CDS
TCCAAATGCTTATATGGTTT+TGG 0.266568 8.4:+47368707 MS.gene34237:CDS
TTGTCATCAATTATGGAATA+TGG 0.266616 8.4:+47368659 MS.gene34237:CDS
ATCCACCCCATTTATTTCAT+TGG 0.284818 8.4:-47368261 None:intergenic
GAAGATAAAAGCACAGAAAA+AGG 0.295008 8.4:-47369864 None:intergenic
GTTCCTATGTCGTGTCATAA+TGG 0.327755 8.4:+47368967 MS.gene34237:CDS
TTCCTATGTCGTGTCATAAT+GGG 0.348589 8.4:+47368968 MS.gene34237:CDS
TTATAGAACATCAAACGTTT+TGG 0.353316 8.4:-47367933 None:intergenic
AGTAGTTGCGAATATGATAA+TGG 0.357526 8.4:+47369034 MS.gene34237:CDS
ATACCATCAACAACACATAT+TGG 0.358711 8.4:-47369932 None:intergenic
TCCTGATATTTCCAAGTCAT+TGG 0.362780 8.4:+47367875 MS.gene34237:CDS
CTTGAAGCTAACAACGAATT+CGG 0.371114 8.4:-47369125 None:intergenic
TGTTTAACAACCACACTTGT+TGG 0.379892 8.4:-47367810 None:intergenic
GTAGTTGCGAATATGATAAT+GGG 0.385391 8.4:+47369035 MS.gene34237:CDS
ACCAATGACTTGGAAATATC+AGG 0.386215 8.4:-47367876 None:intergenic
ATATATCCAATGAAATAAAT+GGG 0.386689 8.4:+47368255 MS.gene34237:CDS
TCCACACCACATAACACTTT+GGG 0.400479 8.4:-47369075 None:intergenic
TGGTGAATGGGTTGACTATC+CGG 0.405730 8.4:+47367959 MS.gene34237:CDS
ACCAAAACCATATAAGCATT+TGG 0.406858 8.4:-47368708 None:intergenic
TACCATCAACAACACATATT+GGG 0.409359 8.4:-47369931 None:intergenic
TTATCATATTCGCAACTACT+TGG 0.411570 8.4:-47369031 None:intergenic
TGAACATCTGACTGGAGTTT+CGG 0.416949 8.4:+47367785 MS.gene34237:CDS
ATGATAACTAACCAGACAAA+AGG 0.421052 8.4:-47368755 None:intergenic
CTTACAGGAATGAGTTCCTT+GGG 0.423013 8.4:+47368482 MS.gene34237:CDS
ACAAAGAATGTAAAAGTTGT+TGG 0.426209 8.4:+47368326 MS.gene34237:CDS
TTGAAGCTAACAACGAATTC+GGG 0.436304 8.4:-47369124 None:intergenic
CTCTTTAGAACAAGCAAGCC+AGG 0.436926 8.4:-47368633 None:intergenic
GGGCGAAGTTGTTTCTTGCC+AGG 0.439010 8.4:-47369010 None:intergenic
CATGCTATGACTAACAAAAT+GGG 0.440985 8.4:+47368350 MS.gene34237:CDS
TTCCACACCACATAACACTT+TGG 0.442208 8.4:-47369076 None:intergenic
GAGAAACCCTCAAAGTCATT+TGG 0.450202 8.4:+47367717 MS.gene34237:CDS
TGTTAGCTTCAAGTCCCCTT+TGG 0.454526 8.4:+47369135 MS.gene34237:CDS
AAAGGTAGCCGAGCGGTACT+TGG 0.457047 8.4:-47369834 None:intergenic
TCTTGTGATGTTGACGGAAG+TGG 0.460329 8.4:+47368932 MS.gene34237:CDS
AATTCACCAAATGACTTTGA+GGG 0.466011 8.4:-47367723 None:intergenic
AAGCTAATGTTCGCTATGCC+TGG 0.466581 8.4:+47368615 MS.gene34237:CDS
AACATAGAGCTTCTTCGTCC+TGG 0.466850 8.4:+47368992 MS.gene34237:CDS
GTTAAACAAATGAAGTTGGT+TGG 0.469240 8.4:+47367825 MS.gene34237:CDS
TCCTCATTAATCCACGCAAT+GGG 0.469325 8.4:-47368116 None:intergenic
AAATTCACCAAATGACTTTG+AGG 0.470158 8.4:-47367724 None:intergenic
TCGAAGTTGAGGTCGGTTGT+TGG 0.470486 8.4:+47370059 MS.gene34237:CDS
CACTCAATCAAAAGCGAAAG+AGG 0.471010 8.4:+47367748 MS.gene34237:CDS
TGAAGAACCCAATAATATAA+GGG 0.474155 8.4:+47368178 MS.gene34237:CDS
TCTTACAGGAATGAGTTCCT+TGG 0.475724 8.4:+47368481 MS.gene34237:CDS
GGTTGTTAAACAAATGAAGT+TGG 0.477778 8.4:+47367821 MS.gene34237:CDS
TAATCATTTAAATCTATGTC+TGG 0.481642 8.4:-47368407 None:intergenic
GTTGAGATTTATCGCAGCTC+AGG 0.483099 8.4:+47368524 MS.gene34237:CDS
TCACCTTCTTGTGATGTTGA+CGG 0.489833 8.4:+47368926 MS.gene34237:CDS
CTGGCTTGCTTGTTCTAAAG+AGG 0.492645 8.4:+47368634 MS.gene34237:CDS
TGTTCTATAACAATGGTGAA+TGG 0.498535 8.4:+47367946 MS.gene34237:CDS
TCCGGAGGATGTTGTTGACT+TGG 0.498921 8.4:+47367977 MS.gene34237:CDS
TTGTTGCATCATCAAACTCT+CGG 0.499366 8.4:-47368307 None:intergenic
AGTCAGATGTTCAACACATT+GGG 0.499388 8.4:-47367775 None:intergenic
TGCCCAATATGTGTTGTTGA+TGG 0.499447 8.4:+47369929 MS.gene34237:CDS
AAGCAGGTTGATATCACAAA+AGG 0.499560 8.4:+47368581 MS.gene34237:CDS
ACCCAATAATATAAGGGAGC+AGG 0.499841 8.4:+47368184 MS.gene34237:CDS
TTCCTCATTAATCCACGCAA+TGG 0.504148 8.4:-47368117 None:intergenic
ATCGATAAGAAACATAATAT+GGG 0.506687 8.4:-47369907 None:intergenic
CGTTTGATGTTCTATAACAA+TGG 0.508284 8.4:+47367939 MS.gene34237:CDS
ACCAAGTCAACAACATCCTC+CGG 0.519855 8.4:-47367978 None:intergenic
GTTCTATAACAATGGTGAAT+GGG 0.527789 8.4:+47367947 MS.gene34237:CDS
TATCATATTCGCAACTACTT+GGG 0.533091 8.4:-47369030 None:intergenic
GTTGTAGAGGTAGAGTTAGA+TGG 0.534366 8.4:+47368029 MS.gene34237:CDS
GGAAGGAACCATGTTTCTCA+TGG 0.534847 8.4:-47369886 None:intergenic
GCTGCAGTTATTCGAAAAGC+AGG 0.535279 8.4:+47368565 MS.gene34237:CDS
TGATAACTAACCAGACAAAA+GGG 0.540717 8.4:-47368754 None:intergenic
AATGTCTTAAACGTTAAGCA+AGG 0.542643 8.4:+47370303 MS.gene34237:CDS
ATAATAACTGACCAATGACT+TGG 0.544389 8.4:-47367886 None:intergenic
AAGACATTTGATCCACCACT+TGG 0.550885 8.4:-47370288 None:intergenic
ACATTTGATCCACCACTTGG+TGG 0.559386 8.4:-47370285 None:intergenic
GATATCACAAAAGGAGTTCG+AGG 0.562997 8.4:+47368590 MS.gene34237:CDS
AATCAAGAAAGCAGTTGTAG+AGG 0.563358 8.4:+47368016 MS.gene34237:CDS
GTTTGCAACAACCCATTGCG+TGG 0.564254 8.4:+47368105 MS.gene34237:CDS
AATATACAATGTTGTATCCA+AGG 0.569110 8.4:+47370103 MS.gene34237:CDS
CAGTCAGATGTTCAACACAT+TGG 0.569289 8.4:-47367776 None:intergenic
ATGATTTCATGTCGAAGTTG+AGG 0.572490 8.4:+47370048 MS.gene34237:CDS
TTAAACGTTAAGCAAGGGTG+AGG 0.573399 8.4:+47370309 MS.gene34237:CDS
ATCCAATGAAATAAATGGGG+TGG 0.575535 8.4:+47368259 MS.gene34237:CDS
TTTATCTTCCATGAGAAACA+TGG 0.584595 8.4:+47369878 MS.gene34237:CDS
ACCCATTGCGTGGATTAATG+AGG 0.591261 8.4:+47368115 MS.gene34237:CDS
CAATAATATAAGGGAGCAGG+AGG 0.600211 8.4:+47368187 MS.gene34237:CDS
GCCCAAAGTGTTATGTGGTG+TGG 0.606900 8.4:+47369074 MS.gene34237:CDS
CAATGTGTTGAACATCTGAC+TGG 0.607572 8.4:+47367777 MS.gene34237:CDS
ATAAGAAACATAATATGGGA+AGG 0.614028 8.4:-47369903 None:intergenic
ATCAGACTTTCTAATGCCCA+AGG 0.616276 8.4:-47368498 None:intergenic
ATGTCTTAAACGTTAAGCAA+GGG 0.616904 8.4:+47370304 MS.gene34237:CDS
AACTAACCAGACAAAAGGGT+GGG 0.620059 8.4:-47368750 None:intergenic
ATGCAGAGACCACCAAGTGG+TGG 0.622327 8.4:+47370276 MS.gene34237:intron
GAAGAACTCCAAGTACCGCT+CGG 0.626923 8.4:+47369826 MS.gene34237:CDS
ATATCACAAAAGGAGTTCGA+GGG 0.628195 8.4:+47368591 MS.gene34237:CDS
ACTCAATCAAAAGCGAAAGA+GGG 0.631027 8.4:+47367749 MS.gene34237:CDS
TTTCATGTCGAAGTTGAGGT+CGG 0.633113 8.4:+47370052 MS.gene34237:CDS
TCCTATGTCGTGTCATAATG+GGG 0.633571 8.4:+47368969 MS.gene34237:CDS
ATGCTATGACTAACAAAATG+GGG 0.641198 8.4:+47368351 MS.gene34237:CDS
CAGGAAAGTCAATGCAAACA+CGG 0.641871 8.4:+47368543 MS.gene34237:CDS
AGTTTCGGCACCAACAAGTG+TGG 0.645505 8.4:+47367800 MS.gene34237:CDS
AAACCATATAAGCATTTGGA+CGG 0.646318 8.4:-47368704 None:intergenic
ATTGCGTGGATTAATGAGGA+AGG 0.650592 8.4:+47368119 MS.gene34237:CDS
CTTCCGTCAACATCACAAGA+AGG 0.653045 8.4:-47368929 None:intergenic
TTGCGAATATGATAATGGGG+TGG 0.654141 8.4:+47369039 MS.gene34237:CDS
TATATCCAATGAAATAAATG+GGG 0.657738 8.4:+47368256 MS.gene34237:CDS
TCAATGCCCAAAGTGTTATG+TGG 0.664510 8.4:+47369069 MS.gene34237:CDS
AGGGTATCGGCATTCTACAG+TGG 0.671871 8.4:+47369491 MS.gene34237:CDS
TCCCCATTATGACACGACAT+AGG 0.673955 8.4:-47368970 None:intergenic
GGTAGAGTTAGATGGCCAAG+AGG 0.674190 8.4:+47368037 MS.gene34237:CDS
TAGTTGCGAATATGATAATG+GGG 0.678638 8.4:+47369036 MS.gene34237:CDS
TATCACAAAAGGAGTTCGAG+GGG 0.685383 8.4:+47368592 MS.gene34237:CDS
TAACTAACCAGACAAAAGGG+TGG 0.690155 8.4:-47368751 None:intergenic
AATAATATAAGGGAGCAGGA+GGG 0.702860 8.4:+47368188 MS.gene34237:CDS
TTCATGCAGAGACCACCAAG+TGG 0.744642 8.4:+47370273 MS.gene34237:intron
AATGGGAAAAGGTAGCCGAG+CGG 0.804951 8.4:-47369841 None:intergenic
TGAATGGGTTGACTATCCGG+AGG 0.807342 8.4:+47367962 MS.gene34237:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAACAGTTAAAAAAAAT+TGG - chr8.4:47369589-47369608 None:intergenic 10.0%
!!! TTTTTCTAGAAATATTTATT+TGG + chr8.4:47370136-47370155 MS.gene34237:intron 10.0%
!! ATATATCCAATGAAATAAAT+GGG + chr8.4:47368255-47368274 MS.gene34237:CDS 15.0%
!! GAAGATAAAAAATATTAGAA+TGG - chr8.4:47369646-47369665 None:intergenic 15.0%
!! TGAATCTTTATATGAAAAAT+TGG + chr8.4:47368433-47368452 MS.gene34237:CDS 15.0%
!! TTTATATGAAAAATTGGATA+TGG + chr8.4:47368439-47368458 MS.gene34237:CDS 15.0%
!!! AATATGTTATGCTTAAATTT+TGG + chr8.4:47370189-47370208 MS.gene34237:intron 15.0%
!!! ATACATTCATGTTAATATTT+TGG + chr8.4:47369674-47369693 MS.gene34237:intron 15.0%
!!! TACATTCATGTTAATATTTT+GGG + chr8.4:47369675-47369694 MS.gene34237:intron 15.0%
!!! TATTTTAACTATAAGAAAAG+TGG + chr8.4:47367906-47367925 MS.gene34237:CDS 15.0%
!!! TTCTAATATTTTTTATCTTC+TGG + chr8.4:47369646-47369665 MS.gene34237:intron 15.0%
!! AGAAAAAAAAAATTGTACCT+TGG - chr8.4:47370123-47370142 None:intergenic 20.0%
!! ATCGATAAGAAACATAATAT+GGG - chr8.4:47369910-47369929 None:intergenic 20.0%
!! ATTGATATTTCTTTCAACAA+CGG + chr8.4:47369388-47369407 MS.gene34237:intron 20.0%
!! CATATATCCAATGAAATAAA+TGG + chr8.4:47368254-47368273 MS.gene34237:CDS 20.0%
!! TAAATGAGAGTAAGAAAAAA+GGG + chr8.4:47369472-47369491 MS.gene34237:CDS 20.0%
!! TAATCATTTAAATCTATGTC+TGG - chr8.4:47368410-47368429 None:intergenic 20.0%
!! TATATCCAATGAAATAAATG+GGG + chr8.4:47368256-47368275 MS.gene34237:CDS 20.0%
!! TTAAATGAGAGTAAGAAAAA+AGG + chr8.4:47369471-47369490 MS.gene34237:CDS 20.0%
!!! ACATTCATGTTAATATTTTG+GGG + chr8.4:47369676-47369695 MS.gene34237:intron 20.0%
!!! CACGACATAATTTTTTTAAA+AGG - chr8.4:47369183-47369202 None:intergenic 20.0%
!!! GTTATCATAGATTATTTTGT+TGG + chr8.4:47368867-47368886 MS.gene34237:intron 20.0%
!!! TGTTTTTTTTTGTTTTGAAC+AGG + chr8.4:47369438-47369457 MS.gene34237:intron 20.0%
!!! TTTAAGACATAGACATAAAT+TGG - chr8.4:47369969-47369988 None:intergenic 20.0%
!!! TTTCTAGTTTTCTATGTAAA+AGG + chr8.4:47369552-47369571 MS.gene34237:intron 20.0%
!!! TTTTTCCCTAAAATTTTTGT+TGG + chr8.4:47368149-47368168 MS.gene34237:CDS 20.0%
! AACCAAAATTGTTTGGATAA+AGG - chr8.4:47369760-47369779 None:intergenic 25.0%
! AATATACAATGTTGTATCCA+AGG + chr8.4:47370103-47370122 MS.gene34237:CDS 25.0%
! ACAAAGAATGTAAAAGTTGT+TGG + chr8.4:47368326-47368345 MS.gene34237:CDS 25.0%
! ATAAGAAACATAATATGGGA+AGG - chr8.4:47369906-47369925 None:intergenic 25.0%
! CATCGATAAGAAACATAATA+TGG - chr8.4:47369911-47369930 None:intergenic 25.0%
! TCATGTGATTCTTTCTTATT+AGG - chr8.4:47368224-47368243 None:intergenic 25.0%
! TGAAGAACCCAATAATATAA+GGG + chr8.4:47368178-47368197 MS.gene34237:CDS 25.0%
! TTAAGTGCTTTACTCTAATT+CGG + chr8.4:47369329-47369348 MS.gene34237:intron 25.0%
! TTGTCATCAATTATGGAATA+TGG + chr8.4:47368659-47368678 MS.gene34237:CDS 25.0%
!! CAGAACCAACAAAAATTTTA+GGG - chr8.4:47368157-47368176 None:intergenic 25.0%
!! TATTTTGTTGGATTTCTCAA+AGG + chr8.4:47368879-47368898 MS.gene34237:intron 25.0%
!! TTATAGAACATCAAACGTTT+TGG - chr8.4:47367936-47367955 None:intergenic 25.0%
!!! CAAAAATTTTAGGGAAAAAG+TGG - chr8.4:47368148-47368167 None:intergenic 25.0%
!!! GAAAAGTGTTACATATCAAT+TGG - chr8.4:47369303-47369322 None:intergenic 25.0%
AAACCATATAAGCATTTGGA+CGG - chr8.4:47368707-47368726 None:intergenic 30.0%
AAATTCACCAAATGACTTTG+AGG - chr8.4:47367727-47367746 None:intergenic 30.0%
AATGTCTTAAACGTTAAGCA+AGG + chr8.4:47370303-47370322 MS.gene34237:CDS 30.0%
AATTCACCAAATGACTTTGA+GGG - chr8.4:47367726-47367745 None:intergenic 30.0%
ACATTACCTTCAAAAACCAA+AGG - chr8.4:47369154-47369173 None:intergenic 30.0%
ACCAAAACCATATAAGCATT+TGG - chr8.4:47368711-47368730 None:intergenic 30.0%
AGAGGAATTGTCATCAATTA+TGG + chr8.4:47368652-47368671 MS.gene34237:CDS 30.0%
AGTAGTTGCGAATATGATAA+TGG + chr8.4:47369034-47369053 MS.gene34237:CDS 30.0%
ATAATAACTGACCAATGACT+TGG - chr8.4:47367889-47367908 None:intergenic 30.0%
ATACCATCAACAACACATAT+TGG - chr8.4:47369935-47369954 None:intergenic 30.0%
ATGATAACTAACCAGACAAA+AGG - chr8.4:47368758-47368777 None:intergenic 30.0%
ATGCTATGACTAACAAAATG+GGG + chr8.4:47368351-47368370 MS.gene34237:CDS 30.0%
ATGTCTTAAACGTTAAGCAA+GGG + chr8.4:47370304-47370323 MS.gene34237:CDS 30.0%
ATTACCTTCAAAAACCAAAG+GGG - chr8.4:47369152-47369171 None:intergenic 30.0%
CATGCTATGACTAACAAAAT+GGG + chr8.4:47368350-47368369 MS.gene34237:CDS 30.0%
CATTACCTTCAAAAACCAAA+GGG - chr8.4:47369153-47369172 None:intergenic 30.0%
CGTTTGATGTTCTATAACAA+TGG + chr8.4:47367939-47367958 MS.gene34237:CDS 30.0%
CTGAAGAACCCAATAATATA+AGG + chr8.4:47368177-47368196 MS.gene34237:CDS 30.0%
GGTTGTTAAACAAATGAAGT+TGG + chr8.4:47367821-47367840 MS.gene34237:CDS 30.0%
GTAGTTGCGAATATGATAAT+GGG + chr8.4:47369035-47369054 MS.gene34237:CDS 30.0%
GTTCTATAACAATGGTGAAT+GGG + chr8.4:47367947-47367966 MS.gene34237:CDS 30.0%
TAAAGGCAATAAAGGAAAAG+AGG - chr8.4:47369743-47369762 None:intergenic 30.0%
TACCACAAACCAAAATTGTT+TGG - chr8.4:47369767-47369786 None:intergenic 30.0%
TACCATCAACAACACATATT+GGG - chr8.4:47369934-47369953 None:intergenic 30.0%
TATCATATTCGCAACTACTT+GGG - chr8.4:47369033-47369052 None:intergenic 30.0%
TCATGCTATGACTAACAAAA+TGG + chr8.4:47368349-47368368 MS.gene34237:CDS 30.0%
TGATAACTAACCAGACAAAA+GGG - chr8.4:47368757-47368776 None:intergenic 30.0%
TGTTCTATAACAATGGTGAA+TGG + chr8.4:47367946-47367965 MS.gene34237:CDS 30.0%
TGTTTGGATAAAGGCAATAA+AGG - chr8.4:47369751-47369770 None:intergenic 30.0%
TTATCATATTCGCAACTACT+TGG - chr8.4:47369034-47369053 None:intergenic 30.0%
TTTATCTTCCATGAGAAACA+TGG + chr8.4:47369878-47369897 MS.gene34237:CDS 30.0%
! AAAAGCACAGAAAAAGGAAT+GGG - chr8.4:47369861-47369880 None:intergenic 30.0%
! AGAGTAAGAAAAAAGGGTAT+CGG + chr8.4:47369478-47369497 MS.gene34237:CDS 30.0%
! GAAGATAAAAGCACAGAAAA+AGG - chr8.4:47369867-47369886 None:intergenic 30.0%
! GCAGAACCAACAAAAATTTT+AGG - chr8.4:47368158-47368177 None:intergenic 30.0%
! GTTAAACAAATGAAGTTGGT+TGG + chr8.4:47367825-47367844 MS.gene34237:CDS 30.0%
! TAAAAGCACAGAAAAAGGAA+TGG - chr8.4:47369862-47369881 None:intergenic 30.0%
! TAGTTGCGAATATGATAATG+GGG + chr8.4:47369036-47369055 MS.gene34237:CDS 30.0%
! TCCAAATGCTTATATGGTTT+TGG + chr8.4:47368707-47368726 MS.gene34237:CDS 30.0%
! TCGGCTATATTTTCTTAACA+TGG - chr8.4:47368291-47368310 None:intergenic 30.0%
! TGCCTTTATCCAAACAATTT+TGG + chr8.4:47369755-47369774 MS.gene34237:intron 30.0%
! TTCATGAGTTTTGCTTCTTA+TGG + chr8.4:47369528-47369547 MS.gene34237:intron 30.0%
!!! ATCCAAACAATTTTGGTTTG+TGG + chr8.4:47369762-47369781 MS.gene34237:intron 30.0%
AATAATATAAGGGAGCAGGA+GGG + chr8.4:47368188-47368207 MS.gene34237:CDS 35.0%
AATCAAGAAAGCAGTTGTAG+AGG + chr8.4:47368016-47368035 MS.gene34237:CDS 35.0%
ACAGAAAAAGGAATGGGAAA+AGG - chr8.4:47369855-47369874 None:intergenic 35.0%
ACTCAATCAAAAGCGAAAGA+GGG + chr8.4:47367749-47367768 MS.gene34237:CDS 35.0%
AGTCAGATGTTCAACACATT+GGG - chr8.4:47367778-47367797 None:intergenic 35.0%
ATATCACAAAAGGAGTTCGA+GGG + chr8.4:47368591-47368610 MS.gene34237:CDS 35.0%
ATCCAATGAAATAAATGGGG+TGG + chr8.4:47368259-47368278 MS.gene34237:CDS 35.0%
ATCCACCCCATTTATTTCAT+TGG - chr8.4:47368264-47368283 None:intergenic 35.0%
ATGATTTCATGTCGAAGTTG+AGG + chr8.4:47370048-47370067 MS.gene34237:CDS 35.0%
CATGAAGCCAACTAAACATT+AGG - chr8.4:47370259-47370278 None:intergenic 35.0%
CTTGAAGCTAACAACGAATT+CGG - chr8.4:47369128-47369147 None:intergenic 35.0%
GCAATAAAGGAAAAGAGGAT+AGG - chr8.4:47369738-47369757 None:intergenic 35.0%
GCACAGAAAATGTTTCTTAC+AGG + chr8.4:47368467-47368486 MS.gene34237:CDS 35.0%
GTAAAAGCTACTAGTGTTTC+TGG + chr8.4:47369795-47369814 MS.gene34237:CDS 35.0%
TATGCCTCCTAATGTTTAGT+TGG + chr8.4:47370249-47370268 MS.gene34237:intron 35.0%
TCCTGATATTTCCAAGTCAT+TGG + chr8.4:47367875-47367894 MS.gene34237:CDS 35.0%
TCCTGCTCCCTTATATTATT+GGG - chr8.4:47368188-47368207 None:intergenic 35.0%
TGTTTAACAACCACACTTGT+TGG - chr8.4:47367813-47367832 None:intergenic 35.0%
TTCCTATGTCGTGTCATAAT+GGG + chr8.4:47368968-47368987 MS.gene34237:CDS 35.0%
TTGAAGCTAACAACGAATTC+GGG - chr8.4:47369127-47369146 None:intergenic 35.0%
TTGTTGCATCATCAAACTCT+CGG - chr8.4:47368310-47368329 None:intergenic 35.0%
! ACCAATGACTTGGAAATATC+AGG - chr8.4:47367879-47367898 None:intergenic 35.0%
!! AAGCAGGTTGATATCACAAA+AGG + chr8.4:47368581-47368600 MS.gene34237:CDS 35.0%
AAAAATCGAGCACAACCTCT+TGG - chr8.4:47368055-47368074 None:intergenic 40.0%
AACTAACCAGACAAAAGGGT+GGG - chr8.4:47368753-47368772 None:intergenic 40.0%
AAGAAGGTGAACTGTGAACA+TGG - chr8.4:47368916-47368935 None:intergenic 40.0%
AAGACATTTGATCCACCACT+TGG - chr8.4:47370291-47370310 None:intergenic 40.0%
ACCCAATAATATAAGGGAGC+AGG + chr8.4:47368184-47368203 MS.gene34237:CDS 40.0%
AGAAGGTGAACTGTGAACAT+GGG - chr8.4:47368915-47368934 None:intergenic 40.0%
ATCAGACTTTCTAATGCCCA+AGG - chr8.4:47368501-47368520 None:intergenic 40.0%
CAATAATATAAGGGAGCAGG+AGG + chr8.4:47368187-47368206 MS.gene34237:CDS 40.0%
CAATGTGTTGAACATCTGAC+TGG + chr8.4:47367777-47367796 MS.gene34237:CDS 40.0%
CACTCAATCAAAAGCGAAAG+AGG + chr8.4:47367748-47367767 MS.gene34237:CDS 40.0%
CAGGAAAGTCAATGCAAACA+CGG + chr8.4:47368543-47368562 MS.gene34237:CDS 40.0%
CAGTCAGATGTTCAACACAT+TGG - chr8.4:47367779-47367798 None:intergenic 40.0%
CTCCTGCTCCCTTATATTAT+TGG - chr8.4:47368189-47368208 None:intergenic 40.0%
CTTACAGGAATGAGTTCCTT+GGG + chr8.4:47368482-47368501 MS.gene34237:CDS 40.0%
GAAGCCAACTAAACATTAGG+AGG - chr8.4:47370256-47370275 None:intergenic 40.0%
GAGAAACCCTCAAAGTCATT+TGG + chr8.4:47367717-47367736 MS.gene34237:CDS 40.0%
GATATCACAAAAGGAGTTCG+AGG + chr8.4:47368590-47368609 MS.gene34237:CDS 40.0%
GTTCCTATGTCGTGTCATAA+TGG + chr8.4:47368967-47368986 MS.gene34237:CDS 40.0%
GTTGTAGAGGTAGAGTTAGA+TGG + chr8.4:47368029-47368048 MS.gene34237:CDS 40.0%
TAACTAACCAGACAAAAGGG+TGG - chr8.4:47368754-47368773 None:intergenic 40.0%
TATCACAAAAGGAGTTCGAG+GGG + chr8.4:47368592-47368611 MS.gene34237:CDS 40.0%
TCACCTTCTTGTGATGTTGA+CGG + chr8.4:47368926-47368945 MS.gene34237:CDS 40.0%
TCCACACCACATAACACTTT+GGG - chr8.4:47369078-47369097 None:intergenic 40.0%
TCCTATGTCGTGTCATAATG+GGG + chr8.4:47368969-47368988 MS.gene34237:CDS 40.0%
TCCTCATTAATCCACGCAAT+GGG - chr8.4:47368119-47368138 None:intergenic 40.0%
TCTCCGTCCAAATGCTTATA+TGG + chr8.4:47368701-47368720 MS.gene34237:CDS 40.0%
TCTTACAGGAATGAGTTCCT+TGG + chr8.4:47368481-47368500 MS.gene34237:CDS 40.0%
TGAACATCTGACTGGAGTTT+CGG + chr8.4:47367785-47367804 MS.gene34237:CDS 40.0%
TTCCACACCACATAACACTT+TGG - chr8.4:47369079-47369098 None:intergenic 40.0%
TTCCTCATTAATCCACGCAA+TGG - chr8.4:47368120-47368139 None:intergenic 40.0%
TTTCATGTCGAAGTTGAGGT+CGG + chr8.4:47370052-47370071 MS.gene34237:CDS 40.0%
! ACACTAGTAGCTTTTACCTG+AGG - chr8.4:47369792-47369811 None:intergenic 40.0%
! ATTGCGTGGATTAATGAGGA+AGG + chr8.4:47368119-47368138 MS.gene34237:CDS 40.0%
! TCAATGCCCAAAGTGTTATG+TGG + chr8.4:47369069-47369088 MS.gene34237:CDS 40.0%
! TGCCCAATATGTGTTGTTGA+TGG + chr8.4:47369929-47369948 MS.gene34237:CDS 40.0%
!! TTGCGAATATGATAATGGGG+TGG + chr8.4:47369039-47369058 MS.gene34237:CDS 40.0%
!!! AAGTCCCCTTTGGTTTTTGA+AGG + chr8.4:47369145-47369164 MS.gene34237:CDS 40.0%
AACATAGAGCTTCTTCGTCC+TGG + chr8.4:47368992-47369011 MS.gene34237:CDS 45.0%
AAGCTAATGTTCGCTATGCC+TGG + chr8.4:47368615-47368634 MS.gene34237:CDS 45.0%
ACATTTGATCCACCACTTGG+TGG - chr8.4:47370288-47370307 None:intergenic 45.0%
ACCAAGTCAACAACATCCTC+CGG - chr8.4:47367981-47368000 None:intergenic 45.0%
CTTCCGTCAACATCACAAGA+AGG - chr8.4:47368932-47368951 None:intergenic 45.0%
GCTGCAGTTATTCGAAAAGC+AGG + chr8.4:47368565-47368584 MS.gene34237:CDS 45.0%
GGAAGGAACCATGTTTCTCA+TGG - chr8.4:47369889-47369908 None:intergenic 45.0%
GTTGAGATTTATCGCAGCTC+AGG + chr8.4:47368524-47368543 MS.gene34237:CDS 45.0%
TCCCCATTATGACACGACAT+AGG - chr8.4:47368973-47368992 None:intergenic 45.0%
TCTTGTGATGTTGACGGAAG+TGG + chr8.4:47368932-47368951 MS.gene34237:CDS 45.0%
! ACCCATTGCGTGGATTAATG+AGG + chr8.4:47368115-47368134 MS.gene34237:CDS 45.0%
! TGTTAGCTTCAAGTCCCCTT+TGG + chr8.4:47369135-47369154 MS.gene34237:CDS 45.0%
!! CTCTTTAGAACAAGCAAGCC+AGG - chr8.4:47368636-47368655 None:intergenic 45.0%
!! CTGGCTTGCTTGTTCTAAAG+AGG + chr8.4:47368634-47368653 MS.gene34237:CDS 45.0%
!! TGGTGAATGGGTTGACTATC+CGG + chr8.4:47367959-47367978 MS.gene34237:CDS 45.0%
!! TTTGGTTTGTGGTATGCCTC+AGG + chr8.4:47369773-47369792 MS.gene34237:intron 45.0%
AATGGGAAAAGGTAGCCGAG+CGG - chr8.4:47369844-47369863 None:intergenic 50.0%
AGTTTCGGCACCAACAAGTG+TGG + chr8.4:47367800-47367819 MS.gene34237:CDS 50.0%
GGTAGAGTTAGATGGCCAAG+AGG + chr8.4:47368037-47368056 MS.gene34237:CDS 50.0%
GTTTGCAACAACCCATTGCG+TGG + chr8.4:47368105-47368124 MS.gene34237:CDS 50.0%
TCGAAGTTGAGGTCGGTTGT+TGG + chr8.4:47370059-47370078 MS.gene34237:CDS 50.0%
TTCATGCAGAGACCACCAAG+TGG + chr8.4:47370273-47370292 MS.gene34237:intron 50.0%
! CTGTTACCCACCCTTTTGTC+TGG + chr8.4:47368744-47368763 MS.gene34237:CDS 50.0%
! GAAGAACTCCAAGTACCGCT+CGG + chr8.4:47369826-47369845 MS.gene34237:CDS 50.0%
! GCCCAAAGTGTTATGTGGTG+TGG + chr8.4:47369074-47369093 MS.gene34237:CDS 50.0%
! TCCGGAGGATGTTGTTGACT+TGG + chr8.4:47367977-47367996 MS.gene34237:CDS 50.0%
!! AGGGTATCGGCATTCTACAG+TGG + chr8.4:47369491-47369510 MS.gene34237:CDS 50.0%
!! TGAATGGGTTGACTATCCGG+AGG + chr8.4:47367962-47367981 MS.gene34237:CDS 50.0%
AAAGGTAGCCGAGCGGTACT+TGG - chr8.4:47369837-47369856 None:intergenic 55.0%
ATGCAGAGACCACCAAGTGG+TGG + chr8.4:47370276-47370295 MS.gene34237:intron 55.0%
!! GGGCGAAGTTGTTTCTTGCC+AGG - chr8.4:47369013-47369032 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 47367711 47370329 47367711 ID=MS.gene34237
chr8.4 mRNA 47367711 47370329 47367711 ID=MS.gene34237.t1;Parent=MS.gene34237
chr8.4 exon 47367711 47368765 47367711 ID=MS.gene34237.t1.exon1;Parent=MS.gene34237.t1
chr8.4 CDS 47367711 47368765 47367711 ID=cds.MS.gene34237.t1;Parent=MS.gene34237.t1
chr8.4 exon 47368925 47369166 47368925 ID=MS.gene34237.t1.exon2;Parent=MS.gene34237.t1
chr8.4 CDS 47368925 47369166 47368925 ID=cds.MS.gene34237.t1;Parent=MS.gene34237.t1
chr8.4 exon 47369460 47369518 47369460 ID=MS.gene34237.t1.exon3;Parent=MS.gene34237.t1
chr8.4 CDS 47369460 47369518 47369460 ID=cds.MS.gene34237.t1;Parent=MS.gene34237.t1
chr8.4 exon 47369795 47369950 47369795 ID=MS.gene34237.t1.exon4;Parent=MS.gene34237.t1
chr8.4 CDS 47369795 47369950 47369795 ID=cds.MS.gene34237.t1;Parent=MS.gene34237.t1
chr8.4 exon 47370029 47370124 47370029 ID=MS.gene34237.t1.exon5;Parent=MS.gene34237.t1
chr8.4 CDS 47370029 47370124 47370029 ID=cds.MS.gene34237.t1;Parent=MS.gene34237.t1
chr8.4 exon 47370282 47370329 47370282 ID=MS.gene34237.t1.exon6;Parent=MS.gene34237.t1
chr8.4 CDS 47370282 47370329 47370282 ID=cds.MS.gene34237.t1;Parent=MS.gene34237.t1
Gene Sequence

>MS.gene34237

ATGGAAGAGAAACCCTCAAAGTCATTTGGTGAATTTGCACTCAATCAAAAGCGAAAGAGGGATACCCAATGTGTTGAACATCTGACTGGAGTTTCGGCACCAACAAGTGTGGTTGTTAAACAAATGAAGTTGGTTGGAGATGTATGCAAATCAGATGACTCTTGTCCTGATATTTCCAAGTCATTGGTCAGTTATTATTTTAACTATAAGAAAAGTGGAATACCAAAACGTTTGATGTTCTATAACAATGGTGAATGGGTTGACTATCCGGAGGATGTTGTTGACTTGGTTAAAAAAGATTTCAAAATCAAGAAAGCAGTTGTAGAGGTAGAGTTAGATGGCCAAGAGGTTGTGCTCGATTTTTTGCATATGTATAATGTGAATTTGAAAACATGTTTGCAACAACCCATTGCGTGGATTAATGAGGAAGGAAACCACTTTTTCCCTAAAATTTTTGTTGGTTCTGCTGAAGAACCCAATAATATAAGGGAGCAGGAGGGTGAAGAAAGTCCTAATAAGAAAGAATCACATGAGACAAAACTACATATATCCAATGAAATAAATGGGGTGGATGAATCCATGTTAAGAAAATATAGCCGAGAGTTTGATGATGCAACAAAGAATGTAAAAGTTGTTGGTCATGCTATGACTAACAAAATGGGGATTCGAAAGTTTGCTATAGATATTAACAAAGAGCCAGACATAGATTTAAATGATTATTCTGAATCTTTATATGAAAAATTGGATATGGATTCTGCACAGAAAATGTTTCTTACAGGAATGAGTTCCTTGGGCATTAGAAAGTCTGATATAGTTGAGATTTATCGCAGCTCAGGAAAGTCAATGCAAACACGGCTGCAGTTATTCGAAAAGCAGGTTGATATCACAAAAGGAGTTCGAGGGGAAGCTAATGTTCGCTATGCCTGGCTTGCTTGTTCTAAAGAGGAATTGTCATCAATTATGGAATATGGACTTAGTCACTATAAACTCTCTCCGTCCAAATGCTTATATGGTTTTGGTGTTCATCTTGCAGCTGTTACCCACCCTTTTGTCTGGTTAGTTATCATATGATCAACATTGAACTTCATACATTATTATTATCATTATCATTATTATTATTATCATCATCATCATCATCATCATCATCATCTAATATGTTATCATAGATTATTTTGTTGGATTTCTCAAAGGATTTAGTTTTCCCATGTTCACAGTTCACCTTCTTGTGATGTTGACGGAAGTGGAATTAAGCATATGTTCCTATGTCGTGTCATAATGGGGAACATAGAGCTTCTTCGTCCTGGCAAGAAACAACTTCGCCCAAGTAGTTGCGAATATGATAATGGGGTGGATGACATTCAATGCCCAAAGTGTTATGTGGTGTGGAACATGAATATGAACACGCATATCTATCCCGAATTCGTTGTTAGCTTCAAGTCCCCTTTGGTTTTTGAAGGTAATGTAATGTTCCTTTTAAAAAAATTATGTCGTGTGTCAATGTTAGATATATGCTTTTTTATGAAAACATGCTTTGCATTTTAGCATTACATAATTATCACTGAAGTGTGAAAGAGTTAATCATTGACAAACCAATTGATATGTAACACTTTTCAACTTATTAAGTGCTTTACTCTAATTCGGAAAAACAATCATTTGTGTATGTTGCTAAGTTGTATGATTGATATTTCTTTCAACAACGGAAAAATCTTCTTGATCACGACACTTGATGTTTTTTTTTGTTTTGAACAGGAAATGTTTGTTTAAATGAGAGTAAGAAAAAAGGGTATCGGCATTCTACAGTGGACACTGTAAGCTTTTTCATGAGTTTTGCTTCTTATGGTTTTCTAGTTTTCTATGTAAAAGGCAATGCTATCACCAATTTTTTTTAACTGTTTTTAAAATCTAACAATGATTTATTTAGTGTACAACTTTCCATTCTAATATTTTTTATCTTCTGGTTTTAATACATTCATGTTAATATTTTGGGGCATTCATCTTTTGAGATTTATCTTCTAGTTTTTAATCCTATCCTCTTTTCCTTTATTGCCTTTATCCAAACAATTTTGGTTTGTGGTATGCCTCAGGTAAAAGCTACTAGTGTTTCTGGTAACATGAGAAGAACTCCAAGTACCGCTCGGCTACCTTTTCCCATTCCTTTTTCTGTGCTTTTATCTTCCATGAGAAACATGGTTCCTTCCCATATTATGTTTCTTATCGATGCCCAATATGTGTTGTTGATGGTATGCAAATGATGTCCAATTTATGTCTATGTCTTAAATAGTAAAATATCACTAATGTATCATGTTGTGCTTGTGCAGTCGAATAAGATTTCACGTAATGATTTCATGTCGAAGTTGAGGTCGGTTGTTGGAAATGATGTACTGAAATCTGCAATATACAATGTTGTATCCAAGGTACAATTTTTTTTTTCTAGAAATATTTATTTGGATTGCTATATGTATTGATCTTATCTCGTTAAATATGTTATGCTTAAATTTTGGATTGTGTAATCATATGATCTATCTCTTGCAATTTGATTATGCCTCCTAATGTTTAGTTGGCTTCATGCAGAGACCACCAAGTGGTGGATCAAATGTCTTAAACGTTAAGCAAGGGTGA

Protein sequence

>MS.gene34237.t1

MEEKPSKSFGEFALNQKRKRDTQCVEHLTGVSAPTSVVVKQMKLVGDVCKSDDSCPDISKSLVSYYFNYKKSGIPKRLMFYNNGEWVDYPEDVVDLVKKDFKIKKAVVEVELDGQEVVLDFLHMYNVNLKTCLQQPIAWINEEGNHFFPKIFVGSAEEPNNIREQEGEESPNKKESHETKLHISNEINGVDESMLRKYSREFDDATKNVKVVGHAMTNKMGIRKFAIDINKEPDIDLNDYSESLYEKLDMDSAQKMFLTGMSSLGIRKSDIVEIYRSSGKSMQTRLQLFEKQVDITKGVRGEANVRYAWLACSKEELSSIMEYGLSHYKLSPSKCLYGFGVHLAAVTHPFVCSPSCDVDGSGIKHMFLCRVIMGNIELLRPGKKQLRPSSCEYDNGVDDIQCPKCYVVWNMNMNTHIYPEFVVSFKSPLVFEGNVCLNESKKKGYRHSTVDTVKATSVSGNMRRTPSTARLPFPIPFSVLLSSMRNMVPSHIMFLIDAQYVLLMSNKISRNDFMSKLRSVVGNDVLKSAIYNVVSKRPPSGGSNVLNVKQG