Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070678.t1 | XP_003613057.1 | 95.8 | 573 | 24 | 0 | 1 | 573 | 1 | 573 | 0.00E+00 | 1107 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070678.t1 | Q8RY59 | 41.5 | 566 | 299 | 14 | 17 | 563 | 21 | 573 | 8.9e-107 | 389.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070678.t1 | G7JWF4 | 95.8 | 573 | 24 | 0 | 1 | 573 | 1 | 573 | 0.0e+00 | 1107.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene070678 | MS.gene065039 | PPI |
| MS.gene070678 | MS.gene001066 | PPI |
| MS.gene057563 | MS.gene070678 | PPI |
| MS.gene070678 | MS.gene021778 | PPI |
| MS.gene070678 | MS.gene046455 | PPI |
| MS.gene070678 | MS.gene76207 | PPI |
| MS.gene046444 | MS.gene070678 | PPI |
| MS.gene36039 | MS.gene070678 | PPI |
| MS.gene070621 | MS.gene070678 | PPI |
| MS.gene79552 | MS.gene070678 | PPI |
| MS.gene070678 | MS.gene057563 | PPI |
| MS.gene070678 | MS.gene027783 | PPI |
| MS.gene007901 | MS.gene070678 | PPI |
| MS.gene070678 | MS.gene74956 | PPI |
| MS.gene34237 | MS.gene070678 | PPI |
| MS.gene070678 | MS.gene069103 | PPI |
| MS.gene070678 | MS.gene029308 | PPI |
| MS.gene070678 | MS.gene046409 | PPI |
| MS.gene070678 | MS.gene032270 | PPI |
| MS.gene070678 | MS.gene070621 | PPI |
| MS.gene74956 | MS.gene070678 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070678.t1 | MTR_5g032190 | 95.812 | 573 | 24 | 0 | 1 | 573 | 1 | 573 | 0.0 | 1151 |
| MS.gene070678.t1 | MTR_5g032190 | 95.851 | 482 | 20 | 0 | 1 | 482 | 1 | 482 | 0.0 | 971 |
| MS.gene070678.t1 | MTR_5g032190 | 95.798 | 476 | 20 | 0 | 1 | 476 | 1 | 476 | 0.0 | 959 |
| MS.gene070678.t1 | MTR_1g112330 | 77.895 | 570 | 117 | 4 | 1 | 562 | 1 | 569 | 0.0 | 897 |
| MS.gene070678.t1 | MTR_1g112330 | 77.544 | 570 | 116 | 5 | 1 | 562 | 1 | 566 | 0.0 | 888 |
| MS.gene070678.t1 | MTR_1g112330 | 81.978 | 455 | 75 | 2 | 1 | 448 | 1 | 455 | 0.0 | 768 |
| MS.gene070678.t1 | MTR_7g011550 | 45.150 | 567 | 272 | 9 | 1 | 561 | 1 | 534 | 4.14e-154 | 453 |
| MS.gene070678.t1 | MTR_5g029580 | 44.308 | 325 | 167 | 5 | 234 | 553 | 27 | 342 | 2.95e-87 | 275 |
| MS.gene070678.t1 | MTR_3g077870 | 31.077 | 325 | 172 | 8 | 233 | 549 | 23 | 303 | 8.33e-39 | 145 |
| MS.gene070678.t1 | MTR_4g105740 | 31.333 | 300 | 160 | 8 | 266 | 560 | 46 | 304 | 6.49e-38 | 142 |
| MS.gene070678.t1 | MTR_4g105740 | 31.438 | 299 | 159 | 8 | 266 | 559 | 46 | 303 | 1.30e-37 | 142 |
| MS.gene070678.t1 | MTR_8g088250 | 27.797 | 295 | 161 | 6 | 270 | 553 | 26 | 279 | 9.94e-30 | 119 |
| MS.gene070678.t1 | MTR_2g090130 | 41.333 | 150 | 51 | 2 | 271 | 418 | 103 | 217 | 4.89e-29 | 115 |
| MS.gene070678.t1 | MTR_2g090130 | 55.738 | 61 | 27 | 0 | 101 | 161 | 43 | 103 | 9.31e-19 | 85.5 |
| MS.gene070678.t1 | MTR_7g011640 | 49.550 | 111 | 35 | 3 | 101 | 210 | 15 | 105 | 8.51e-23 | 95.1 |
| MS.gene070678.t1 | MTR_7g011880 | 35.032 | 157 | 73 | 4 | 376 | 531 | 58 | 186 | 4.67e-19 | 85.9 |
| MS.gene070678.t1 | MTR_7g061850 | 39.583 | 96 | 53 | 2 | 235 | 325 | 28 | 123 | 1.03e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070678.t1 | AT1G32230 | 41.355 | 561 | 300 | 12 | 17 | 560 | 21 | 569 | 1.14e-135 | 407 |
| MS.gene070678.t1 | AT1G32230 | 41.312 | 564 | 302 | 12 | 17 | 563 | 21 | 572 | 2.94e-135 | 406 |
| MS.gene070678.t1 | AT1G32230 | 41.312 | 564 | 302 | 12 | 17 | 563 | 21 | 572 | 2.94e-135 | 406 |
| MS.gene070678.t1 | AT1G32230 | 41.312 | 564 | 302 | 12 | 17 | 563 | 21 | 572 | 2.94e-135 | 406 |
| MS.gene070678.t1 | AT1G32230 | 41.312 | 564 | 302 | 12 | 17 | 563 | 21 | 572 | 2.94e-135 | 406 |
| MS.gene070678.t1 | AT1G32230 | 41.519 | 566 | 299 | 14 | 17 | 563 | 21 | 573 | 1.02e-134 | 405 |
| MS.gene070678.t1 | AT2G35510 | 39.446 | 578 | 321 | 11 | 1 | 560 | 1 | 567 | 4.93e-124 | 377 |
| MS.gene070678.t1 | AT2G35510 | 39.446 | 578 | 321 | 11 | 1 | 560 | 1 | 567 | 4.93e-124 | 377 |
| MS.gene070678.t1 | AT2G35510 | 40.741 | 459 | 253 | 8 | 1 | 448 | 1 | 451 | 1.20e-107 | 331 |
| MS.gene070678.t1 | AT1G70440 | 27.596 | 337 | 192 | 8 | 226 | 550 | 2 | 298 | 2.32e-37 | 140 |
| MS.gene070678.t1 | AT1G70440 | 27.596 | 337 | 192 | 8 | 226 | 550 | 2 | 298 | 2.32e-37 | 140 |
| MS.gene070678.t1 | AT1G23550 | 33.333 | 237 | 117 | 5 | 316 | 548 | 109 | 308 | 1.17e-36 | 139 |
| MS.gene070678.t1 | AT5G62520 | 29.644 | 253 | 130 | 5 | 301 | 549 | 89 | 297 | 1.71e-26 | 110 |
| MS.gene070678.t1 | AT3G47720 | 27.037 | 270 | 135 | 8 | 292 | 550 | 85 | 303 | 1.30e-22 | 99.4 |
| MS.gene070678.t1 | AT5G62520 | 33.562 | 146 | 88 | 3 | 301 | 442 | 89 | 229 | 2.92e-20 | 90.9 |
Find 128 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTGTGATATTGACGAAAA+TGG | 0.188994 | 5.3:+20785408 | MS.gene070678:CDS |
| TCAGAATCAGCATAAATTTC+AGG | 0.192300 | 5.3:-20784327 | None:intergenic |
| TGTTTGACAACTTCGTTTCT+TGG | 0.207598 | 5.3:-20783982 | None:intergenic |
| CATTTAGAAATTGAAATAAA+TGG | 0.220833 | 5.3:+20784432 | MS.gene070678:CDS |
| ATATGCATTATCTGCAATTC+AGG | 0.249387 | 5.3:+20787023 | MS.gene070678:CDS |
| GCTCTCAGAAACAAGGTTTC+TGG | 0.253143 | 5.3:+20786980 | MS.gene070678:CDS |
| ATTTAATATCATTAGGATCT+TGG | 0.284189 | 5.3:-20784407 | None:intergenic |
| TTGAAACTAACAACATATTC+TGG | 0.302685 | 5.3:-20785600 | None:intergenic |
| TCATCTCCCAATACTTAATA+AGG | 0.303795 | 5.3:-20787381 | None:intergenic |
| TGATAGACCATCAAACGTTC+TGG | 0.315101 | 5.3:-20784105 | None:intergenic |
| TTCTCCACTATCCTGATTGC+AGG | 0.320979 | 5.3:-20784367 | None:intergenic |
| CCGTGTAATAATGGGGAATA+TGG | 0.323010 | 5.3:+20785452 | MS.gene070678:CDS |
| AGAAAAGTACCTTGCTTTGA+AGG | 0.336075 | 5.3:-20787225 | None:intergenic |
| TGTATATGGAAGGTTGGATT+TGG | 0.339592 | 5.3:+20784629 | MS.gene070678:CDS |
| ATCCAAGATACTATATAGTT+TGG | 0.339769 | 5.3:+20785550 | MS.gene070678:CDS |
| GTTGGTAGTGCAGTTGTATA+TGG | 0.343580 | 5.3:+20784615 | MS.gene070678:CDS |
| AAATGTAATTTAATATCATT+AGG | 0.344899 | 5.3:-20784414 | None:intergenic |
| ACCATCTCGTGTGATCAAAA+TGG | 0.346697 | 5.3:+20787356 | MS.gene070678:CDS |
| TGTACAGAAGATGTTTCTTA+AGG | 0.349580 | 5.3:+20784656 | MS.gene070678:CDS |
| CAAGGTTTCTGGGAAGGATA+TGG | 0.350509 | 5.3:+20786991 | MS.gene070678:CDS |
| ATTGTGATATTGACGAAAAT+GGG | 0.350719 | 5.3:+20785409 | MS.gene070678:CDS |
| CTGGTAATTACCAGGCAAAA+AGG | 0.353126 | 5.3:+20787125 | MS.gene070678:intron |
| TATCAGATGAATTTGAAATC+TGG | 0.365305 | 5.3:+20784255 | MS.gene070678:CDS |
| TTCCAAACTATATAGTATCT+TGG | 0.367197 | 5.3:-20785552 | None:intergenic |
| AGAATATGTTGTTAGTTTCA+AGG | 0.376305 | 5.3:+20785602 | MS.gene070678:CDS |
| GCTTGGCTTGCTTCTTCTAA+AGG | 0.378498 | 5.3:+20784816 | MS.gene070678:CDS |
| CTTAAGGGAACTAGTAGTTT+TGG | 0.380222 | 5.3:+20784672 | MS.gene070678:CDS |
| GTACAGAAGATGTTTCTTAA+GGG | 0.381330 | 5.3:+20784657 | MS.gene070678:CDS |
| CTCTCAGAAACAAGGTTTCT+GGG | 0.382764 | 5.3:+20786981 | MS.gene070678:CDS |
| GTCTCGTCAATCCAAGCAAT+AGG | 0.384507 | 5.3:-20784288 | None:intergenic |
| CGTTTGATGGTCTATCAAAA+TGG | 0.393202 | 5.3:+20784111 | MS.gene070678:CDS |
| TCCTCAGAATGTTGTTAACT+TGG | 0.397435 | 5.3:+20784149 | MS.gene070678:CDS |
| CGAAAATGGGGTTCGACACT+TGG | 0.398654 | 5.3:+20785422 | MS.gene070678:CDS |
| AGAATGTTGTTAACTTGGTT+AGG | 0.403416 | 5.3:+20784154 | MS.gene070678:CDS |
| GTTTGCAGCGCCCTATTGCT+TGG | 0.403920 | 5.3:+20784277 | MS.gene070678:CDS |
| GACTCATATTGGACGGTCAT+TGG | 0.404817 | 5.3:+20784047 | MS.gene070678:CDS |
| GGAGTCGATGCTTCCAAGTT+GGG | 0.405561 | 5.3:+20784453 | MS.gene070678:CDS |
| AGTAGCAATAACATGGGAAA+TGG | 0.417478 | 5.3:+20784555 | MS.gene070678:CDS |
| TTTGATCACACGAGATGGTT+GGG | 0.422810 | 5.3:-20787352 | None:intergenic |
| TCCTGATTGCAGGGATCATA+AGG | 0.423550 | 5.3:-20784357 | None:intergenic |
| TCTAAATGCACACATGGCTT+TGG | 0.435149 | 5.3:+20784891 | MS.gene070678:CDS |
| TAGTCTTACTTCCTAAAAGA+AGG | 0.436907 | 5.3:-20785998 | None:intergenic |
| ACGAAATCAGAGACTCATAT+TGG | 0.440224 | 5.3:+20784036 | MS.gene070678:CDS |
| GCCTTATGATCCCTGCAATC+AGG | 0.446075 | 5.3:+20784356 | MS.gene070678:CDS |
| GCGACCAGTGTTACCTCGTT+GGG | 0.451664 | 5.3:+20783945 | MS.gene070678:CDS |
| TCAGGATAGTGGAGAAAGTC+AGG | 0.458623 | 5.3:+20784374 | MS.gene070678:CDS |
| TGCAGTTGTATATGGAAGGT+TGG | 0.460207 | 5.3:+20784623 | MS.gene070678:CDS |
| ATGCTAATGTTCAATATGCT+TGG | 0.470269 | 5.3:+20784799 | MS.gene070678:CDS |
| CTCTTGAGAGCTACAATAGT+TGG | 0.472193 | 5.3:+20787202 | MS.gene070678:CDS |
| AGCACAGGAAAAGGCATTGA+AGG | 0.473023 | 5.3:-20786950 | None:intergenic |
| CAACGGAAAGGCATCGGATA+GGG | 0.473840 | 5.3:+20783861 | MS.gene070678:CDS |
| ATTTATGCTGATTCTGATGA+AGG | 0.474554 | 5.3:+20784333 | MS.gene070678:CDS |
| CAGAATCAGCATAAATTTCA+GGG | 0.479346 | 5.3:-20784326 | None:intergenic |
| AGTATGCTTAACTATAACAT+TGG | 0.483021 | 5.3:-20784493 | None:intergenic |
| TCTCGTCAATCCAAGCAATA+GGG | 0.485939 | 5.3:-20784287 | None:intergenic |
| ACTATCATAGTCACTACTAC+TGG | 0.487570 | 5.3:-20785508 | None:intergenic |
| AAGGTCTCTTCTGCTGCTGA+AGG | 0.492093 | 5.3:+20785621 | MS.gene070678:CDS |
| ATTGCTTGGATTGACGAGAC+AGG | 0.495738 | 5.3:+20784291 | MS.gene070678:CDS |
| TAGAAATTAAACCTGGCAAA+AGG | 0.497397 | 5.3:-20784939 | None:intergenic |
| GATAGACCATCAAACGTTCT+GGG | 0.497415 | 5.3:-20784104 | None:intergenic |
| AGTAGTAGTGACTATGATAG+TGG | 0.498552 | 5.3:+20785510 | MS.gene070678:CDS |
| TGGACGCCCAGAACGTTTGA+TGG | 0.500372 | 5.3:+20784098 | MS.gene070678:CDS |
| ATACCTCAGGGAATAGCATC+TGG | 0.501440 | 5.3:+20786905 | MS.gene070678:intron |
| GCATCAATAAGCACAGGAAA+AGG | 0.503405 | 5.3:-20786959 | None:intergenic |
| TGGAGTCGATGCTTCCAAGT+TGG | 0.503473 | 5.3:+20784452 | MS.gene070678:CDS |
| ACTATGATGAAGTGTGGGCT+TGG | 0.505685 | 5.3:+20784849 | MS.gene070678:CDS |
| TACAGTGATGCAATCACGAT+TGG | 0.505775 | 5.3:+20784731 | MS.gene070678:CDS |
| GATCCCTGCAATCAGGATAG+TGG | 0.509927 | 5.3:+20784363 | MS.gene070678:CDS |
| AATATGGAGCTTCTCCGTCC+TGG | 0.513713 | 5.3:+20785468 | MS.gene070678:CDS |
| AAAGGCATTGAAGGGGATGT+TGG | 0.517939 | 5.3:-20786941 | None:intergenic |
| TGCGACCAGTGTTACCTCGT+TGG | 0.519288 | 5.3:+20783944 | MS.gene070678:CDS |
| CTATCAAAATGGTGAATGGA+AGG | 0.536490 | 5.3:+20784122 | MS.gene070678:CDS |
| CTATATAGTATCTTGGATTG+TGG | 0.536691 | 5.3:-20785545 | None:intergenic |
| AGCAAACAACGGAAAGGCAT+CGG | 0.538566 | 5.3:+20783855 | MS.gene070678:CDS |
| TGCATCACTGTACTTGAGAA+GGG | 0.539798 | 5.3:-20784720 | None:intergenic |
| TATATGAATTATAAGAAGAG+TGG | 0.542935 | 5.3:+20784078 | MS.gene070678:CDS |
| ATATGAGTCTCTGATTTCGT+CGG | 0.544734 | 5.3:-20784033 | None:intergenic |
| CAACATATTCTGGACAGATG+TGG | 0.545442 | 5.3:-20785590 | None:intergenic |
| ACTGGTCGCAGATCTCCGTT+TGG | 0.546119 | 5.3:-20783931 | None:intergenic |
| ACAACGGAAAGGCATCGGAT+AGG | 0.546402 | 5.3:+20783860 | MS.gene070678:CDS |
| GTAGTAGTGACTATGATAGT+GGG | 0.547301 | 5.3:+20785511 | MS.gene070678:CDS |
| TGGTCTATCAAAATGGTGAA+TGG | 0.549899 | 5.3:+20784118 | MS.gene070678:CDS |
| AACATATTCTGGACAGATGT+GGG | 0.551162 | 5.3:-20785589 | None:intergenic |
| GGACGAAACTGTCTAGTGCC+AGG | 0.552779 | 5.3:-20785486 | None:intergenic |
| CCACATGCTACATGTCCAAA+CGG | 0.553167 | 5.3:+20783916 | MS.gene070678:CDS |
| AACATGGGAAATGGAAATGT+TGG | 0.556039 | 5.3:+20784564 | MS.gene070678:CDS |
| CTATCATAGTCACTACTACT+GGG | 0.559417 | 5.3:-20785507 | None:intergenic |
| TATCTACTATGATGAAGTGT+GGG | 0.563052 | 5.3:+20784844 | MS.gene070678:CDS |
| CAGAAACAAGGTTTCTGGGA+AGG | 0.565183 | 5.3:+20786985 | MS.gene070678:CDS |
| GCACAGGAAAAGGCATTGAA+GGG | 0.565819 | 5.3:-20786949 | None:intergenic |
| ATTAAACCTGGCAAAAGGAA+AGG | 0.568389 | 5.3:-20784934 | None:intergenic |
| AATAGTTGGCCTTCAAAGCA+AGG | 0.570840 | 5.3:+20787216 | MS.gene070678:CDS |
| CTGAGAGCATCAATAAGCAC+AGG | 0.571313 | 5.3:-20786965 | None:intergenic |
| TATTGATGCTCTCAGAAACA+AGG | 0.572331 | 5.3:+20786973 | MS.gene070678:CDS |
| TGAAGATAGTAGCAATAACA+TGG | 0.572879 | 5.3:+20784548 | MS.gene070678:CDS |
| GTAGTGCAGTTGTATATGGA+AGG | 0.578361 | 5.3:+20784619 | MS.gene070678:CDS |
| TTGCTTGGATTGACGAGACA+GGG | 0.581940 | 5.3:+20784292 | MS.gene070678:CDS |
| GAGTCGATGCTTCCAAGTTG+GGG | 0.583392 | 5.3:+20784454 | MS.gene070678:CDS |
| TTGCATCACTGTACTTGAGA+AGG | 0.584101 | 5.3:-20784721 | None:intergenic |
| AAGTGTGGGCTTGGTCATTG+TGG | 0.585698 | 5.3:+20784858 | MS.gene070678:CDS |
| CCATATTCCCCATTATTACA+CGG | 0.586757 | 5.3:-20785452 | None:intergenic |
| TCTCCACTATCCTGATTGCA+GGG | 0.589306 | 5.3:-20784366 | None:intergenic |
| ATCACACGAGATGGTTGGGA+GGG | 0.590498 | 5.3:-20787348 | None:intergenic |
| TTTATGCTGATTCTGATGAA+GGG | 0.597717 | 5.3:+20784334 | MS.gene070678:CDS |
| ACCAAGTTAACAACATTCTG+AGG | 0.597828 | 5.3:-20784150 | None:intergenic |
| TATGCATTATCTGCAATTCA+GGG | 0.603277 | 5.3:+20787024 | MS.gene070678:CDS |
| ATAGCATCTGGTTCGCGTAG+AGG | 0.613583 | 5.3:+20786917 | MS.gene070678:CDS |
| TCTACATCTAAATGCACACA+TGG | 0.616416 | 5.3:+20784885 | MS.gene070678:CDS |
| CCGTTTGGACATGTAGCATG+TGG | 0.622892 | 5.3:-20783916 | None:intergenic |
| GATGCCCAACGAGGTAACAC+TGG | 0.624845 | 5.3:-20783949 | None:intergenic |
| GGGTTGTGCTTAATCTGAAG+CGG | 0.628518 | 5.3:+20783881 | MS.gene070678:CDS |
| GATCACACGAGATGGTTGGG+AGG | 0.630443 | 5.3:-20787349 | None:intergenic |
| GAAACTGTCTAGTGCCAGGA+CGG | 0.638018 | 5.3:-20785482 | None:intergenic |
| TTGTGATATTGACGAAAATG+GGG | 0.640860 | 5.3:+20785410 | MS.gene070678:CDS |
| GCATCACTGTACTTGAGAAG+GGG | 0.643866 | 5.3:-20784719 | None:intergenic |
| CTATCTACTATGATGAAGTG+TGG | 0.646279 | 5.3:+20784843 | MS.gene070678:CDS |
| AATCAGAGACTCATATTGGA+CGG | 0.648143 | 5.3:+20784040 | MS.gene070678:CDS |
| GAAGATAGTAGCAATAACAT+GGG | 0.651958 | 5.3:+20784549 | MS.gene070678:CDS |
| CATGGAAGCAAACAACGGAA+AGG | 0.655293 | 5.3:+20783849 | None:intergenic |
| CACAGGAAAAGGCATTGAAG+GGG | 0.658134 | 5.3:-20786948 | None:intergenic |
| ACTGTGGAGGTAGAGTTACA+TGG | 0.660219 | 5.3:+20784201 | MS.gene070678:CDS |
| TAGTGACTATGATAGTGGGG+TGG | 0.665276 | 5.3:+20785515 | MS.gene070678:CDS |
| TGCGAAGAAAGCAACTGTGG+AGG | 0.668909 | 5.3:+20784188 | MS.gene070678:CDS |
| AGTCGATGCTTCCAAGTTGG+GGG | 0.670164 | 5.3:+20784455 | MS.gene070678:CDS |
| TAATGCGAAGAAAGCAACTG+TGG | 0.675973 | 5.3:+20784185 | MS.gene070678:CDS |
| TAGTAGTGACTATGATAGTG+GGG | 0.676289 | 5.3:+20785512 | MS.gene070678:CDS |
| ATAAACATGGAAGCAAACAA+CGG | 0.703722 | 5.3:+20783844 | None:intergenic |
| GATACAAGTGATGCCCAACG+AGG | 0.767068 | 5.3:-20783958 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGTAATTTAATATCATT+AGG | - | chr5.3:20784417-20784436 | None:intergenic | 10.0% |
| !! | AACTTAATATATATGAAAAA+AGG | - | chr5.3:20786192-20786211 | None:intergenic | 10.0% |
| !! | ATTGATGTATAAATAAATAT+GGG | - | chr5.3:20785272-20785291 | None:intergenic | 10.0% |
| !! | AGGAAAAAAATTATTTAGAT+GGG | + | chr5.3:20786442-20786461 | MS.gene070678:intron | 15.0% |
| !! | CATTGATGTATAAATAAATA+TGG | - | chr5.3:20785273-20785292 | None:intergenic | 15.0% |
| !! | CATTTAGAAATTGAAATAAA+TGG | + | chr5.3:20784432-20784451 | MS.gene070678:CDS | 15.0% |
| !! | TTGATGTATAAATAAATATG+GGG | - | chr5.3:20785271-20785290 | None:intergenic | 15.0% |
| !! | TTTACACAAGTATTTATTTA+AGG | + | chr5.3:20785053-20785072 | MS.gene070678:intron | 15.0% |
| !!! | AAGACTAAGAATAATATTTT+TGG | + | chr5.3:20786014-20786033 | MS.gene070678:CDS | 15.0% |
| !!! | AGACTAAGAATAATATTTTT+GGG | + | chr5.3:20786015-20786034 | MS.gene070678:CDS | 15.0% |
| !!! | ATTTTAATAAAATTCTGAGA+AGG | + | chr5.3:20786625-20786644 | MS.gene070678:intron | 15.0% |
| !!! | GGAATTGATAATTTAATAAA+AGG | + | chr5.3:20786318-20786337 | MS.gene070678:intron | 15.0% |
| !!! | TATATTTTTATTTTGCTCAA+CGG | - | chr5.3:20784595-20784614 | None:intergenic | 15.0% |
| !!! | TTTTTATTATTCTGTTGTAA+TGG | + | chr5.3:20785345-20785364 | MS.gene070678:intron | 15.0% |
| !! | ACCAATATTATAAACGAAAA+TGG | - | chr5.3:20785720-20785739 | None:intergenic | 20.0% |
| !! | AGAAGACATAAAAGAAATAA+AGG | - | chr5.3:20785659-20785678 | None:intergenic | 20.0% |
| !! | ATAAATAAATATGGGGAAAA+AGG | - | chr5.3:20785264-20785283 | None:intergenic | 20.0% |
| !! | ATATAAAAGATGAAACACAT+TGG | - | chr5.3:20786258-20786277 | None:intergenic | 20.0% |
| !! | ATTTAATATCATTAGGATCT+TGG | - | chr5.3:20784410-20784429 | None:intergenic | 20.0% |
| !! | GAGCAAAATAAAAATATAGT+TGG | + | chr5.3:20784597-20784616 | MS.gene070678:CDS | 20.0% |
| !! | GAGGAAAAAAATTATTTAGA+TGG | + | chr5.3:20786441-20786460 | MS.gene070678:intron | 20.0% |
| !! | TATATATGAAAAAAGGAAAG+TGG | - | chr5.3:20786185-20786204 | None:intergenic | 20.0% |
| !! | TATATGAATTATAAGAAGAG+TGG | + | chr5.3:20784078-20784097 | MS.gene070678:CDS | 20.0% |
| !! | TATTATAAACGAAAATGGAA+AGG | - | chr5.3:20785715-20785734 | None:intergenic | 20.0% |
| !! | TCGTTTATAATATTGGTATA+TGG | + | chr5.3:20785723-20785742 | MS.gene070678:intron | 20.0% |
| !!! | AAAGGATCTTATTTTTTGTT+AGG | - | chr5.3:20785697-20785716 | None:intergenic | 20.0% |
| !!! | AATTCAATAGTTTTTTCCTT+TGG | + | chr5.3:20785028-20785047 | MS.gene070678:intron | 20.0% |
| !!! | AGTATTATAGAACATTTTCA+AGG | - | chr5.3:20785162-20785181 | None:intergenic | 20.0% |
| !!! | GACTAAGAATAATATTTTTG+GGG | + | chr5.3:20786016-20786035 | MS.gene070678:CDS | 20.0% |
| !!! | GATATATAATGCATTTTTAC+AGG | + | chr5.3:20785975-20785994 | MS.gene070678:intron | 20.0% |
| !!! | TAACTTGTTGATATATGATT+CGG | + | chr5.3:20785769-20785788 | MS.gene070678:intron | 20.0% |
| !!! | TATAAATTGTCATTGTTTTC+TGG | + | chr5.3:20787106-20787125 | MS.gene070678:intron | 20.0% |
| !!! | TCCATTTTCGTTTATAATAT+TGG | + | chr5.3:20785716-20785735 | MS.gene070678:intron | 20.0% |
| !!! | TTAGATTTTGAATTTGCTTT+TGG | + | chr5.3:20786811-20786830 | MS.gene070678:intron | 20.0% |
| ! | AAAAATTATTTAGATGGGAC+AGG | + | chr5.3:20786447-20786466 | MS.gene070678:intron | 25.0% |
| ! | AAATTACGAAAAATTGTCGT+GGG | + | chr5.3:20784775-20784794 | MS.gene070678:CDS | 25.0% |
| ! | AAGAAACCGTTTAAACAATT+AGG | - | chr5.3:20787321-20787340 | None:intergenic | 25.0% |
| ! | AATACTTGTGTAAAAACCAA+AGG | - | chr5.3:20785047-20785066 | None:intergenic | 25.0% |
| ! | ACAATTGACAATAATAGAAG+TGG | - | chr5.3:20785126-20785145 | None:intergenic | 25.0% |
| ! | AGTATGCTTAACTATAACAT+TGG | - | chr5.3:20784496-20784515 | None:intergenic | 25.0% |
| ! | ATACCTCCTAATTGTTTAAA+CGG | + | chr5.3:20787312-20787331 | MS.gene070678:intron | 25.0% |
| ! | ATCCAAGATACTATATAGTT+TGG | + | chr5.3:20785550-20785569 | MS.gene070678:CDS | 25.0% |
| ! | ATTGTGATATTGACGAAAAT+GGG | + | chr5.3:20785409-20785428 | MS.gene070678:CDS | 25.0% |
| ! | CACAAGTATTTATTTAAGGA+TGG | + | chr5.3:20785057-20785076 | MS.gene070678:intron | 25.0% |
| ! | TGATGATTAGAAATTAAACC+TGG | - | chr5.3:20784949-20784968 | None:intergenic | 25.0% |
| ! | TTATACTATCTAAGCAATCT+AGG | + | chr5.3:20786699-20786718 | MS.gene070678:intron | 25.0% |
| ! | TTATCAATTCCTCTATATTC+TGG | - | chr5.3:20786309-20786328 | None:intergenic | 25.0% |
| ! | TTCCAAACTATATAGTATCT+TGG | - | chr5.3:20785555-20785574 | None:intergenic | 25.0% |
| ! | TTGAAACTAACAACATATTC+TGG | - | chr5.3:20785603-20785622 | None:intergenic | 25.0% |
| !! | AGAATATGTTGTTAGTTTCA+AGG | + | chr5.3:20785602-20785621 | MS.gene070678:CDS | 25.0% |
| !! | CGAATCAATTTTTGAATTCT+GGG | + | chr5.3:20786882-20786901 | MS.gene070678:intron | 25.0% |
| !! | TATCAGATGAATTTGAAATC+TGG | + | chr5.3:20784255-20784274 | MS.gene070678:CDS | 25.0% |
| !! | TCGAATCAATTTTTGAATTC+TGG | + | chr5.3:20786881-20786900 | MS.gene070678:intron | 25.0% |
| !! | TTTAAACAATTAGGAGGTAT+AGG | - | chr5.3:20787312-20787331 | None:intergenic | 25.0% |
| !!! | AAATGCATTGCTTTTTACAA+AGG | - | chr5.3:20786148-20786167 | None:intergenic | 25.0% |
| !!! | TGCTTTTTACAAAGGAAATT+TGG | - | chr5.3:20786140-20786159 | None:intergenic | 25.0% |
| AAAAATTCAGCACAAGATGA+TGG | - | chr5.3:20784227-20784246 | None:intergenic | 30.0% | |
| AAACAAGTTTCCAAAAGGAA+GGG | - | chr5.3:20785941-20785960 | None:intergenic | 30.0% | |
| AAACCGTTTAAACAATTAGG+AGG | - | chr5.3:20787318-20787337 | None:intergenic | 30.0% | |
| AAGTGATCTGTCAAATATGA+AGG | - | chr5.3:20785865-20785884 | None:intergenic | 30.0% | |
| AATTACGAAAAATTGTCGTG+GGG | + | chr5.3:20784776-20784795 | MS.gene070678:CDS | 30.0% | |
| ATATGCATTATCTGCAATTC+AGG | + | chr5.3:20787023-20787042 | MS.gene070678:CDS | 30.0% | |
| ATGCTAATGTTCAATATGCT+TGG | + | chr5.3:20784799-20784818 | MS.gene070678:CDS | 30.0% | |
| CAGAATCAGCATAAATTTCA+GGG | - | chr5.3:20784329-20784348 | None:intergenic | 30.0% | |
| CATTGTGATATTGACGAAAA+TGG | + | chr5.3:20785408-20785427 | MS.gene070678:CDS | 30.0% | |
| CTATATAGTATCTTGGATTG+TGG | - | chr5.3:20785548-20785567 | None:intergenic | 30.0% | |
| GAAAGAAACAAGTTTCCAAA+AGG | - | chr5.3:20785946-20785965 | None:intergenic | 30.0% | |
| GAAATTACGAAAAATTGTCG+TGG | + | chr5.3:20784774-20784793 | MS.gene070678:CDS | 30.0% | |
| GAAGATAGTAGCAATAACAT+GGG | + | chr5.3:20784549-20784568 | MS.gene070678:CDS | 30.0% | |
| GATATCAATTAAGACAGAGA+CGG | - | chr5.3:20787081-20787100 | None:intergenic | 30.0% | |
| GGATAAATTCCAGAATATAG+AGG | + | chr5.3:20786297-20786316 | MS.gene070678:intron | 30.0% | |
| GTACAGAAGATGTTTCTTAA+GGG | + | chr5.3:20784657-20784676 | MS.gene070678:CDS | 30.0% | |
| TAGAAATTAAACCTGGCAAA+AGG | - | chr5.3:20784942-20784961 | None:intergenic | 30.0% | |
| TAGATATGCAGGCATAATTA+GGG | + | chr5.3:20786413-20786432 | MS.gene070678:intron | 30.0% | |
| TATAGATTTCTGACTCATCA+TGG | + | chr5.3:20786654-20786673 | MS.gene070678:intron | 30.0% | |
| TATCTACTATGATGAAGTGT+GGG | + | chr5.3:20784844-20784863 | MS.gene070678:CDS | 30.0% | |
| TATGCATTATCTGCAATTCA+GGG | + | chr5.3:20787024-20787043 | MS.gene070678:CDS | 30.0% | |
| TCAGAATCAGCATAAATTTC+AGG | - | chr5.3:20784330-20784349 | None:intergenic | 30.0% | |
| TCTACTAATATATCTCTGCA+TGG | + | chr5.3:20785083-20785102 | MS.gene070678:intron | 30.0% | |
| TGAAGATAGTAGCAATAACA+TGG | + | chr5.3:20784548-20784567 | MS.gene070678:CDS | 30.0% | |
| TGTACAGAAGATGTTTCTTA+AGG | + | chr5.3:20784656-20784675 | MS.gene070678:CDS | 30.0% | |
| TTACAAAGGAAATTTGGCAT+CGG | - | chr5.3:20786134-20786153 | None:intergenic | 30.0% | |
| TTGTGATATTGACGAAAATG+GGG | + | chr5.3:20785410-20785429 | MS.gene070678:CDS | 30.0% | |
| ! | AGAATGTTGTTAACTTGGTT+AGG | + | chr5.3:20784154-20784173 | MS.gene070678:CDS | 30.0% |
| ! | ATTTTTACAGGCCTTCTTTT+AGG | + | chr5.3:20785987-20786006 | MS.gene070678:intron | 30.0% |
| ! | CATTGGCTATCTTAATATCA+AGG | - | chr5.3:20786241-20786260 | None:intergenic | 30.0% |
| ! | TAGTCTTACTTCCTAAAAGA+AGG | - | chr5.3:20786001-20786020 | None:intergenic | 30.0% |
| ! | TCTGTTGTAATGGAAAGAAA+GGG | + | chr5.3:20785355-20785374 | MS.gene070678:intron | 30.0% |
| ! | TTCTGTTGTAATGGAAAGAA+AGG | + | chr5.3:20785354-20785373 | MS.gene070678:intron | 30.0% |
| !! | ATTGTTTTCTGGTAATTACC+AGG | + | chr5.3:20787117-20787136 | MS.gene070678:intron | 30.0% |
| !! | ATTTATGCTGATTCTGATGA+AGG | + | chr5.3:20784333-20784352 | MS.gene070678:CDS | 30.0% |
| !! | TTTATGCTGATTCTGATGAA+GGG | + | chr5.3:20784334-20784353 | MS.gene070678:CDS | 30.0% |
| !!! | AAGGCTTTAACTTTTTTGCA+TGG | + | chr5.3:20787250-20787269 | MS.gene070678:intron | 30.0% |
| !!! | AGGCTTTAACTTTTTTGCAT+GGG | + | chr5.3:20787251-20787270 | MS.gene070678:intron | 30.0% |
| AACATATTCTGGACAGATGT+GGG | - | chr5.3:20785592-20785611 | None:intergenic | 35.0% | |
| AACATGGGAAATGGAAATGT+TGG | + | chr5.3:20784564-20784583 | MS.gene070678:CDS | 35.0% | |
| AAGGAGAAATCAACAAGCTA+GGG | - | chr5.3:20785823-20785842 | None:intergenic | 35.0% | |
| AATCAGAGACTCATATTGGA+CGG | + | chr5.3:20784040-20784059 | MS.gene070678:CDS | 35.0% | |
| ACCAAGTTAACAACATTCTG+AGG | - | chr5.3:20784153-20784172 | None:intergenic | 35.0% | |
| ACGAAATCAGAGACTCATAT+TGG | + | chr5.3:20784036-20784055 | MS.gene070678:CDS | 35.0% | |
| ACTATCATAGTCACTACTAC+TGG | - | chr5.3:20785511-20785530 | None:intergenic | 35.0% | |
| AGTAGCAATAACATGGGAAA+TGG | + | chr5.3:20784555-20784574 | MS.gene070678:CDS | 35.0% | |
| AGTAGTAGTGACTATGATAG+TGG | + | chr5.3:20785510-20785529 | MS.gene070678:CDS | 35.0% | |
| ATATGAGTCTCTGATTTCGT+CGG | - | chr5.3:20784036-20784055 | None:intergenic | 35.0% | |
| ATTAAACCTGGCAAAAGGAA+AGG | - | chr5.3:20784937-20784956 | None:intergenic | 35.0% | |
| CCATATTCCCCATTATTACA+CGG | - | chr5.3:20785455-20785474 | None:intergenic | 35.0% | |
| CTAGATATGCAGGCATAATT+AGG | + | chr5.3:20786412-20786431 | MS.gene070678:intron | 35.0% | |
| CTATCAAAATGGTGAATGGA+AGG | + | chr5.3:20784122-20784141 | MS.gene070678:CDS | 35.0% | |
| CTATCATAGTCACTACTACT+GGG | - | chr5.3:20785510-20785529 | None:intergenic | 35.0% | |
| CTATCTACTATGATGAAGTG+TGG | + | chr5.3:20784843-20784862 | MS.gene070678:CDS | 35.0% | |
| GAAACAAGTTTCCAAAAGGA+AGG | - | chr5.3:20785942-20785961 | None:intergenic | 35.0% | |
| GTACTTGATGAGTTAATCAG+AGG | + | chr5.3:20785745-20785764 | MS.gene070678:intron | 35.0% | |
| GTAGTAGTGACTATGATAGT+GGG | + | chr5.3:20785511-20785530 | MS.gene070678:CDS | 35.0% | |
| TATTGATGCTCTCAGAAACA+AGG | + | chr5.3:20786973-20786992 | MS.gene070678:CDS | 35.0% | |
| TCCTCAGAATGTTGTTAACT+TGG | + | chr5.3:20784149-20784168 | MS.gene070678:CDS | 35.0% | |
| TCTACATCTAAATGCACACA+TGG | + | chr5.3:20784885-20784904 | MS.gene070678:CDS | 35.0% | |
| TGAATGGTTTATCTGCTACA+TGG | + | chr5.3:20787281-20787300 | MS.gene070678:intron | 35.0% | |
| TGGTCTATCAAAATGGTGAA+TGG | + | chr5.3:20784118-20784137 | MS.gene070678:CDS | 35.0% | |
| TGTATATGGAAGGTTGGATT+TGG | + | chr5.3:20784629-20784648 | MS.gene070678:CDS | 35.0% | |
| TGTTTGACAACTTCGTTTCT+TGG | - | chr5.3:20783985-20784004 | None:intergenic | 35.0% | |
| ! | ATGATTTTGCGAAGAAGTTG+AGG | + | chr5.3:20787158-20787177 | MS.gene070678:CDS | 35.0% |
| ! | CCAATGACTGCATTGATAAA+AGG | + | chr5.3:20786485-20786504 | MS.gene070678:intron | 35.0% |
| ! | CCTTTTATCAATGCAGTCAT+TGG | - | chr5.3:20786488-20786507 | None:intergenic | 35.0% |
| ! | CGTTTGATGGTCTATCAAAA+TGG | + | chr5.3:20784111-20784130 | MS.gene070678:CDS | 35.0% |
| ! | CTTAAGGGAACTAGTAGTTT+TGG | + | chr5.3:20784672-20784691 | MS.gene070678:CDS | 35.0% |
| ! | GAAAGAAAGGGATTCAAGTT+TGG | + | chr5.3:20785367-20785386 | MS.gene070678:intron | 35.0% |
| ! | GACTGCATTGATAAAAGGAA+TGG | + | chr5.3:20786490-20786509 | MS.gene070678:intron | 35.0% |
| ! | GTCTTTTGCCGTGTAATAAT+GGG | + | chr5.3:20785444-20785463 | MS.gene070678:CDS | 35.0% |
| ! | TAGTAGTGACTATGATAGTG+GGG | + | chr5.3:20785512-20785531 | MS.gene070678:CDS | 35.0% |
| ! | TCTGAACGTGACAAGATTTT+AGG | - | chr5.3:20786062-20786081 | None:intergenic | 35.0% |
| ! | TCTTTTGCCGTGTAATAATG+GGG | + | chr5.3:20785445-20785464 | MS.gene070678:CDS | 35.0% |
| ! | TGCATTGATAAAAGGAATGG+TGG | + | chr5.3:20786493-20786512 | MS.gene070678:intron | 35.0% |
| !! | AAGCAAGGTACTTTTCTCAA+AGG | + | chr5.3:20787231-20787250 | MS.gene070678:intron | 35.0% |
| !! | AGAAAAGTACCTTGCTTTGA+AGG | - | chr5.3:20787228-20787247 | None:intergenic | 35.0% |
| !! | ATGATTCGGTTCATTCCATT+TGG | + | chr5.3:20785783-20785802 | MS.gene070678:intron | 35.0% |
| !! | CAGATAAGTTCTAGATATGC+AGG | + | chr5.3:20786402-20786421 | MS.gene070678:intron | 35.0% |
| !! | TAGTGTAAAACTAGCTTTGC+TGG | + | chr5.3:20787051-20787070 | MS.gene070678:intron | 35.0% |
| !!! | GTGACAAGATTTTAGGACTT+CGG | - | chr5.3:20786055-20786074 | None:intergenic | 35.0% |
| ACCATCTCGTGTGATCAAAA+TGG | + | chr5.3:20787356-20787375 | MS.gene070678:CDS | 40.0% | |
| ATAAGTAGCACGTCTTCAGA+AGG | + | chr5.3:20786276-20786295 | MS.gene070678:intron | 40.0% | |
| CAACATATTCTGGACAGATG+TGG | - | chr5.3:20785593-20785612 | None:intergenic | 40.0% | |
| CTCTCAGAAACAAGGTTTCT+GGG | + | chr5.3:20786981-20787000 | MS.gene070678:CDS | 40.0% | |
| CTCTTGAGAGCTACAATAGT+TGG | + | chr5.3:20787202-20787221 | MS.gene070678:CDS | 40.0% | |
| CTGGTAATTACCAGGCAAAA+AGG | + | chr5.3:20787125-20787144 | MS.gene070678:intron | 40.0% | |
| GAAGGAGAAATCAACAAGCT+AGG | - | chr5.3:20785824-20785843 | None:intergenic | 40.0% | |
| GATAGACCATCAAACGTTCT+GGG | - | chr5.3:20784107-20784126 | None:intergenic | 40.0% | |
| GCATCAATAAGCACAGGAAA+AGG | - | chr5.3:20786962-20786981 | None:intergenic | 40.0% | |
| GTAGCAGATAAACCATTCAC+TGG | - | chr5.3:20787280-20787299 | None:intergenic | 40.0% | |
| GTAGTGCAGTTGTATATGGA+AGG | + | chr5.3:20784619-20784638 | MS.gene070678:CDS | 40.0% | |
| GTTCATTCCATTTGGATGGA+GGG | + | chr5.3:20785791-20785810 | MS.gene070678:intron | 40.0% | |
| TAATGCGAAGAAAGCAACTG+TGG | + | chr5.3:20784185-20784204 | MS.gene070678:CDS | 40.0% | |
| TACAGTGATGCAATCACGAT+TGG | + | chr5.3:20784731-20784750 | MS.gene070678:CDS | 40.0% | |
| TCTAAATGCACACATGGCTT+TGG | + | chr5.3:20784891-20784910 | MS.gene070678:CDS | 40.0% | |
| TCTCGTCAATCCAAGCAATA+GGG | - | chr5.3:20784290-20784309 | None:intergenic | 40.0% | |
| TGATAGACCATCAAACGTTC+TGG | - | chr5.3:20784108-20784127 | None:intergenic | 40.0% | |
| TGCAGTTGTATATGGAAGGT+TGG | + | chr5.3:20784623-20784642 | MS.gene070678:CDS | 40.0% | |
| TGCATCACTGTACTTGAGAA+GGG | - | chr5.3:20784723-20784742 | None:intergenic | 40.0% | |
| TTCGGTTCATTCCATTTGGA+TGG | + | chr5.3:20785787-20785806 | MS.gene070678:intron | 40.0% | |
| TTGACAGATCACTTCATGTC+TGG | + | chr5.3:20785871-20785890 | MS.gene070678:intron | 40.0% | |
| TTGCATCACTGTACTTGAGA+AGG | - | chr5.3:20784724-20784743 | None:intergenic | 40.0% | |
| TTTGATCACACGAGATGGTT+GGG | - | chr5.3:20787355-20787374 | None:intergenic | 40.0% | |
| ! | CCGTGTAATAATGGGGAATA+TGG | + | chr5.3:20785452-20785471 | MS.gene070678:CDS | 40.0% |
| ! | GGTCTTTTGCCGTGTAATAA+TGG | + | chr5.3:20785443-20785462 | MS.gene070678:CDS | 40.0% |
| ! | GTTGATTTCTCCTTCTGGTT+GGG | + | chr5.3:20785829-20785848 | MS.gene070678:intron | 40.0% |
| ! | TGCAGGCATAATTAGGGTTT+TGG | + | chr5.3:20786419-20786438 | MS.gene070678:intron | 40.0% |
| ! | TTTTGATCACACGAGATGGT+TGG | - | chr5.3:20787356-20787375 | None:intergenic | 40.0% |
| !! | AATAGTTGGCCTTCAAAGCA+AGG | + | chr5.3:20787216-20787235 | MS.gene070678:CDS | 40.0% |
| !! | AGCTTGTTGATTTCTCCTTC+TGG | + | chr5.3:20785824-20785843 | MS.gene070678:intron | 40.0% |
| !! | AGGCATAATTAGGGTTTTGG+AGG | + | chr5.3:20786422-20786441 | MS.gene070678:intron | 40.0% |
| !! | GTTGGTAGTGCAGTTGTATA+TGG | + | chr5.3:20784615-20784634 | MS.gene070678:CDS | 40.0% |
| !! | TCCATTTTGATCACACGAGA+TGG | - | chr5.3:20787360-20787379 | None:intergenic | 40.0% |
| !! | TGTTGATTTCTCCTTCTGGT+TGG | + | chr5.3:20785828-20785847 | MS.gene070678:intron | 40.0% |
| !! | TTGAATTCTGGGATACCTCA+GGG | + | chr5.3:20786893-20786912 | MS.gene070678:intron | 40.0% |
| !! | TTTGAATTCTGGGATACCTC+AGG | + | chr5.3:20786892-20786911 | MS.gene070678:intron | 40.0% |
| !!! | CTGACTCATCATGGTTTTGA+AGG | + | chr5.3:20786663-20786682 | MS.gene070678:intron | 40.0% |
| ACTATGATGAAGTGTGGGCT+TGG | + | chr5.3:20784849-20784868 | MS.gene070678:CDS | 45.0% | |
| ACTGTGGAGGTAGAGTTACA+TGG | + | chr5.3:20784201-20784220 | MS.gene070678:CDS | 45.0% | |
| ATACCTCAGGGAATAGCATC+TGG | + | chr5.3:20786905-20786924 | MS.gene070678:intron | 45.0% | |
| ATTGCTTGGATTGACGAGAC+AGG | + | chr5.3:20784291-20784310 | MS.gene070678:CDS | 45.0% | |
| CCACATGCTACATGTCCAAA+CGG | + | chr5.3:20783916-20783935 | MS.gene070678:CDS | 45.0% | |
| GACTCATATTGGACGGTCAT+TGG | + | chr5.3:20784047-20784066 | MS.gene070678:CDS | 45.0% | |
| GATGAAACCCTCCATCCAAA+TGG | - | chr5.3:20785801-20785820 | None:intergenic | 45.0% | |
| GCATCACTGTACTTGAGAAG+GGG | - | chr5.3:20784722-20784741 | None:intergenic | 45.0% | |
| GCTCTCAGAAACAAGGTTTC+TGG | + | chr5.3:20786980-20786999 | MS.gene070678:CDS | 45.0% | |
| GGGTTGTGCTTAATCTGAAG+CGG | + | chr5.3:20783881-20783900 | MS.gene070678:CDS | 45.0% | |
| GGTTCATTCCATTTGGATGG+AGG | + | chr5.3:20785790-20785809 | MS.gene070678:intron | 45.0% | |
| GTCTCGTCAATCCAAGCAAT+AGG | - | chr5.3:20784291-20784310 | None:intergenic | 45.0% | |
| TCCTGATTGCAGGGATCATA+AGG | - | chr5.3:20784360-20784379 | None:intergenic | 45.0% | |
| TCTCCACTATCCTGATTGCA+GGG | - | chr5.3:20784369-20784388 | None:intergenic | 45.0% | |
| TTCTCCACTATCCTGATTGC+AGG | - | chr5.3:20784370-20784389 | None:intergenic | 45.0% | |
| TTGCTTGGATTGACGAGACA+GGG | + | chr5.3:20784292-20784311 | MS.gene070678:CDS | 45.0% | |
| ! | AGCAAACAACGGAAAGGCAT+CGG | + | chr5.3:20783855-20783874 | MS.gene070678:CDS | 45.0% |
| ! | CAAAGGAAATTTGGCATCGG+AGG | - | chr5.3:20786131-20786150 | None:intergenic | 45.0% |
| ! | CAAGGTTTCTGGGAAGGATA+TGG | + | chr5.3:20786991-20787010 | MS.gene070678:CDS | 45.0% |
| ! | CAGAAACAAGGTTTCTGGGA+AGG | + | chr5.3:20786985-20787004 | MS.gene070678:CDS | 45.0% |
| !! | AAAGGCATTGAAGGGGATGT+TGG | - | chr5.3:20786944-20786963 | None:intergenic | 45.0% |
| !! | AGCACAGGAAAAGGCATTGA+AGG | - | chr5.3:20786953-20786972 | None:intergenic | 45.0% |
| !! | CACAGGAAAAGGCATTGAAG+GGG | - | chr5.3:20786951-20786970 | None:intergenic | 45.0% |
| !! | CTGAGAGCATCAATAAGCAC+AGG | - | chr5.3:20786968-20786987 | None:intergenic | 45.0% |
| !! | GCACAGGAAAAGGCATTGAA+GGG | - | chr5.3:20786952-20786971 | None:intergenic | 45.0% |
| !! | GCTTGGCTTGCTTCTTCTAA+AGG | + | chr5.3:20784816-20784835 | MS.gene070678:CDS | 45.0% |
| !! | TAGTGACTATGATAGTGGGG+TGG | + | chr5.3:20785515-20785534 | MS.gene070678:CDS | 45.0% |
| !! | TCAGGATAGTGGAGAAAGTC+AGG | + | chr5.3:20784374-20784393 | MS.gene070678:CDS | 45.0% |
| AAGGTCTCTTCTGCTGCTGA+AGG | + | chr5.3:20785621-20785640 | MS.gene070678:CDS | 50.0% | |
| AATATGGAGCTTCTCCGTCC+TGG | + | chr5.3:20785468-20785487 | MS.gene070678:CDS | 50.0% | |
| ATCACACGAGATGGTTGGGA+GGG | - | chr5.3:20787351-20787370 | None:intergenic | 50.0% | |
| CCGTTTGGACATGTAGCATG+TGG | - | chr5.3:20783919-20783938 | None:intergenic | 50.0% | |
| CGAAAATGGGGTTCGACACT+TGG | + | chr5.3:20785422-20785441 | MS.gene070678:CDS | 50.0% | |
| GAAACTGTCTAGTGCCAGGA+CGG | - | chr5.3:20785485-20785504 | None:intergenic | 50.0% | |
| GAACCAGATGCTATTCCCTG+AGG | - | chr5.3:20786911-20786930 | None:intergenic | 50.0% | |
| GAGTCGATGCTTCCAAGTTG+GGG | + | chr5.3:20784454-20784473 | MS.gene070678:CDS | 50.0% | |
| GATACAAGTGATGCCCAACG+AGG | - | chr5.3:20783961-20783980 | None:intergenic | 50.0% | |
| GATCCCTGCAATCAGGATAG+TGG | + | chr5.3:20784363-20784382 | MS.gene070678:CDS | 50.0% | |
| GCCTTATGATCCCTGCAATC+AGG | + | chr5.3:20784356-20784375 | MS.gene070678:CDS | 50.0% | |
| GGAGTCGATGCTTCCAAGTT+GGG | + | chr5.3:20784453-20784472 | MS.gene070678:CDS | 50.0% | |
| TGCGAAGAAAGCAACTGTGG+AGG | + | chr5.3:20784188-20784207 | MS.gene070678:CDS | 50.0% | |
| TGGAGTCGATGCTTCCAAGT+TGG | + | chr5.3:20784452-20784471 | MS.gene070678:CDS | 50.0% | |
| TTGCATGGGACTCCAGTGAA+TGG | + | chr5.3:20787265-20787284 | MS.gene070678:intron | 50.0% | |
| ! | AAGTGTGGGCTTGGTCATTG+TGG | + | chr5.3:20784858-20784877 | MS.gene070678:CDS | 50.0% |
| ! | AGTCGATGCTTCCAAGTTGG+GGG | + | chr5.3:20784455-20784474 | MS.gene070678:CDS | 50.0% |
| ! | ATAGCATCTGGTTCGCGTAG+AGG | + | chr5.3:20786917-20786936 | MS.gene070678:CDS | 50.0% |
| ! | CACGAGTCATCCTTTTTGCC+TGG | - | chr5.3:20787138-20787157 | None:intergenic | 50.0% |
| ! | CTGCTACCTTTCCTTTTGCC+AGG | + | chr5.3:20784928-20784947 | MS.gene070678:CDS | 50.0% |
| ! | TGTACGAGTGCCCTTCCTTT+TGG | + | chr5.3:20785928-20785947 | MS.gene070678:intron | 50.0% |
| !! | ACAACGGAAAGGCATCGGAT+AGG | + | chr5.3:20783860-20783879 | MS.gene070678:CDS | 50.0% |
| !! | CAACGGAAAGGCATCGGATA+GGG | + | chr5.3:20783861-20783880 | MS.gene070678:CDS | 50.0% |
| ACTGGTCGCAGATCTCCGTT+TGG | - | chr5.3:20783934-20783953 | None:intergenic | 55.0% | |
| AGCTCAAGTGCCCAACCAGA+AGG | - | chr5.3:20785842-20785861 | None:intergenic | 55.0% | |
| GATCACACGAGATGGTTGGG+AGG | - | chr5.3:20787352-20787371 | None:intergenic | 55.0% | |
| GATGCCCAACGAGGTAACAC+TGG | - | chr5.3:20783952-20783971 | None:intergenic | 55.0% | |
| GCGACCAGTGTTACCTCGTT+GGG | + | chr5.3:20783945-20783964 | MS.gene070678:CDS | 55.0% | |
| GGACGAAACTGTCTAGTGCC+AGG | - | chr5.3:20785489-20785508 | None:intergenic | 55.0% | |
| GTTTGCAGCGCCCTATTGCT+TGG | + | chr5.3:20784277-20784296 | MS.gene070678:CDS | 55.0% | |
| TGCGACCAGTGTTACCTCGT+TGG | + | chr5.3:20783944-20783963 | MS.gene070678:CDS | 55.0% | |
| TGGACGCCCAGAACGTTTGA+TGG | + | chr5.3:20784098-20784117 | MS.gene070678:CDS | 55.0% | |
| GCACTCGTACAGCTTGGCAG+GGG | - | chr5.3:20785919-20785938 | None:intergenic | 60.0% | |
| GGCACTCGTACAGCTTGGCA+GGG | - | chr5.3:20785920-20785939 | None:intergenic | 60.0% | |
| ! | CAAGTTGGGGGAGTGCACAG+GGG | + | chr5.3:20784467-20784486 | MS.gene070678:CDS | 60.0% |
| ! | CCAAGTTGGGGGAGTGCACA+GGG | + | chr5.3:20784466-20784485 | MS.gene070678:CDS | 60.0% |
| ! | TCCAAGTTGGGGGAGTGCAC+AGG | + | chr5.3:20784465-20784484 | MS.gene070678:CDS | 60.0% |
| !! | GGAAGGGCACTCGTACAGCT+TGG | - | chr5.3:20785925-20785944 | None:intergenic | 60.0% |
| CCCTGTGCACTCCCCCAACT+TGG | - | chr5.3:20784469-20784488 | None:intergenic | 65.0% | |
| GGGCACTCGTACAGCTTGGC+AGG | - | chr5.3:20785921-20785940 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 20783850 | 20787389 | 20783850 | ID=MS.gene070678 |
| chr5.3 | mRNA | 20783850 | 20787389 | 20783850 | ID=MS.gene070678.t1;Parent=MS.gene070678 |
| chr5.3 | exon | 20783850 | 20784949 | 20783850 | ID=MS.gene070678.t1.exon1;Parent=MS.gene070678.t1 |
| chr5.3 | CDS | 20783850 | 20784949 | 20783850 | ID=cds.MS.gene070678.t1;Parent=MS.gene070678.t1 |
| chr5.3 | exon | 20785401 | 20785642 | 20785401 | ID=MS.gene070678.t1.exon2;Parent=MS.gene070678.t1 |
| chr5.3 | CDS | 20785401 | 20785642 | 20785401 | ID=cds.MS.gene070678.t1;Parent=MS.gene070678.t1 |
| chr5.3 | exon | 20785997 | 20786100 | 20785997 | ID=MS.gene070678.t1.exon3;Parent=MS.gene070678.t1 |
| chr5.3 | CDS | 20785997 | 20786100 | 20785997 | ID=cds.MS.gene070678.t1;Parent=MS.gene070678.t1 |
| chr5.3 | exon | 20786914 | 20787045 | 20786914 | ID=MS.gene070678.t1.exon4;Parent=MS.gene070678.t1 |
| chr5.3 | CDS | 20786914 | 20787045 | 20786914 | ID=cds.MS.gene070678.t1;Parent=MS.gene070678.t1 |
| chr5.3 | exon | 20787139 | 20787237 | 20787139 | ID=MS.gene070678.t1.exon5;Parent=MS.gene070678.t1 |
| chr5.3 | CDS | 20787139 | 20787237 | 20787139 | ID=cds.MS.gene070678.t1;Parent=MS.gene070678.t1 |
| chr5.3 | exon | 20787345 | 20787389 | 20787345 | ID=MS.gene070678.t1.exon6;Parent=MS.gene070678.t1 |
| chr5.3 | CDS | 20787345 | 20787389 | 20787345 | ID=cds.MS.gene070678.t1;Parent=MS.gene070678.t1 |
| Gene Sequence |
| Protein sequence |
