AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene36039


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36039.t1 MTR_7g011550 78.727 550 113 1 1 550 1 546 0.0 896
MS.gene36039.t1 MTR_1g112330 44.834 571 273 8 1 537 1 563 7.01e-154 452
MS.gene36039.t1 MTR_1g112330 44.677 573 274 7 1 537 1 566 9.90e-154 452
MS.gene36039.t1 MTR_5g032190 43.826 575 274 10 1 539 1 562 2.48e-149 441
MS.gene36039.t1 MTR_1g112330 49.134 462 199 6 1 433 1 455 3.51e-140 413
MS.gene36039.t1 MTR_5g032190 47.903 453 211 6 1 433 1 448 2.52e-134 399
MS.gene36039.t1 MTR_5g032190 47.903 453 211 6 1 433 1 448 5.26e-134 399
MS.gene36039.t1 MTR_5g029580 56.329 316 131 3 218 530 31 342 2.57e-119 357
MS.gene36039.t1 MTR_7g011880 60.000 155 37 3 355 509 57 186 1.81e-49 169
MS.gene36039.t1 MTR_7g011640 63.964 111 23 1 90 200 15 108 6.32e-37 134
MS.gene36039.t1 MTR_2g090130 47.333 150 44 1 254 403 103 217 1.22e-35 133
MS.gene36039.t1 MTR_2g090130 51.613 124 26 1 27 150 14 103 4.09e-30 117
MS.gene36039.t1 MTR_4g105740 30.405 296 168 8 246 537 43 304 7.69e-34 131
MS.gene36039.t1 MTR_4g105740 30.508 295 167 8 246 536 43 303 1.22e-33 130
MS.gene36039.t1 MTR_3g077870 30.272 294 163 8 251 540 61 316 4.36e-33 129
MS.gene36039.t1 MTR_8g088250 27.719 285 166 6 254 530 27 279 9.93e-29 116
MS.gene36039.t1 MTR_7g061850 44.094 127 62 1 184 310 6 123 1.59e-26 105
MS.gene36039.t1 MTR_7g061730 74.000 50 13 0 487 536 1 50 2.85e-17 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36039.t1 AT1G32230 35.495 555 317 10 11 530 15 563 2.92e-101 318
MS.gene36039.t1 AT1G32230 35.379 554 318 10 11 530 15 562 3.61e-101 317
MS.gene36039.t1 AT1G32230 35.379 554 318 10 11 530 15 562 6.54e-101 317
MS.gene36039.t1 AT1G32230 35.379 554 318 10 11 530 15 562 6.54e-101 317
MS.gene36039.t1 AT1G32230 35.379 554 318 10 11 530 15 562 6.54e-101 317
MS.gene36039.t1 AT1G32230 35.379 554 318 10 11 530 15 562 6.54e-101 317
MS.gene36039.t1 AT2G35510 35.903 493 284 9 58 526 71 555 4.55e-92 293
MS.gene36039.t1 AT2G35510 35.903 493 284 9 58 526 71 555 4.55e-92 293
MS.gene36039.t1 AT2G35510 39.633 381 210 7 58 426 71 443 1.06e-87 278
MS.gene36039.t1 AT1G23550 32.740 281 151 8 261 532 63 314 1.19e-35 136
MS.gene36039.t1 AT5G62520 28.028 289 168 5 244 526 42 296 8.07e-34 130
MS.gene36039.t1 AT1G70440 30.686 277 151 5 257 526 54 296 2.39e-33 129
MS.gene36039.t1 AT1G70440 30.686 277 151 5 257 526 54 296 2.39e-33 129
MS.gene36039.t1 AT5G62520 33.333 192 120 3 244 429 42 231 4.92e-28 112
MS.gene36039.t1 AT3G47720 28.631 241 124 5 298 536 117 311 8.23e-23 99.8

Find 118 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTGCTCCCTTATATTAT+TGG 0.156025 8.1:-52401377 None:intergenic
CATATATCCAATGAAATAAA+TGG 0.166586 8.1:+52401445 MS.gene36039:CDS
TCATGTGATTCTTTCTTATT+AGG 0.193411 8.1:-52401412 None:intergenic
TCATGCTATGACTAACAAAA+TGG 0.219540 8.1:+52401540 MS.gene36039:CDS
GCACAGAAAATGTTTCTTAC+AGG 0.228702 8.1:+52401658 MS.gene36039:CDS
TCCTGCTCCCTTATATTATT+GGG 0.230780 8.1:-52401376 None:intergenic
CATCGATAAGAAACATAATA+TGG 0.251384 8.1:-52403162 None:intergenic
AGAGGAATTGTCATCAATTA+TGG 0.254170 8.1:+52401843 MS.gene36039:CDS
CTGAAGAACCCAATAATATA+AGG 0.257902 8.1:+52401368 MS.gene36039:CDS
TTGTCATCAATTATGGAATA+TGG 0.266616 8.1:+52401850 MS.gene36039:CDS
ATCCACCCCATTTATTTCAT+TGG 0.284818 8.1:-52401452 None:intergenic
GAAGATAAAAGCACAGAAAA+AGG 0.295008 8.1:-52403118 None:intergenic
TCTCCGTCCAAATGCTTATA+TGG 0.306632 8.1:+52401892 MS.gene36039:CDS
GTTCCTATGTCGTGTCATAA+TGG 0.327755 8.1:+52402227 MS.gene36039:CDS
AGTAGTTGCGAATATGATAA+TGG 0.339409 8.1:+52402294 MS.gene36039:CDS
TTATAGAACATCAAACGTTT+TGG 0.343644 8.1:-52401124 None:intergenic
TTCCTATGTCGTGTCATAAT+GGG 0.348589 8.1:+52402228 MS.gene36039:CDS
TCCTGATATTTCCAAGTCAT+TGG 0.362780 8.1:+52401066 MS.gene36039:CDS
ATACCATCAACAACGCATAT+TGG 0.365715 8.1:-52403186 None:intergenic
CTTGAAGCTAACAACGAATT+CGG 0.371114 8.1:-52402385 None:intergenic
TCCAAATGCTTATATGGCTT+TGG 0.375955 8.1:+52401898 MS.gene36039:CDS
CTTCCGTCAACATCAGAAAA+AGG 0.377910 8.1:-52402189 None:intergenic
TGTTTAACAACCACACTTGT+TGG 0.379892 8.1:-52401001 None:intergenic
GTAGTTGCGAATATGATAAT+GGG 0.385391 8.1:+52402295 MS.gene36039:CDS
ACCAATGACTTGGAAATATC+AGG 0.386215 8.1:-52401067 None:intergenic
ATATATCCAATGAAATAAAT+GGG 0.386689 8.1:+52401446 MS.gene36039:CDS
TCCACACCACATAACACTTT+GGG 0.400479 8.1:-52402335 None:intergenic
TGGTGAATGGGTTGACTATC+CGG 0.405927 8.1:+52401150 MS.gene36039:CDS
TTATCATATTCGCAACTACT+TGG 0.410566 8.1:-52402291 None:intergenic
TACCATCAACAACGCATATT+GGG 0.412239 8.1:-52403185 None:intergenic
TGAACATCTGACTGGAGTTT+CGG 0.416949 8.1:+52400976 MS.gene36039:CDS
ATGATAACTAACCAGACAAA+AGG 0.421052 8.1:-52401946 None:intergenic
CTTACAGGAATGAGTTCCTT+GGG 0.423013 8.1:+52401673 MS.gene36039:CDS
TTGAAGCTAACAACGAATTC+GGG 0.436304 8.1:-52402384 None:intergenic
CTCTTTAGAACAAGCAAGCC+AGG 0.436926 8.1:-52401824 None:intergenic
CGTTTGATGTTCTATAAGAA+TGG 0.440910 8.1:+52401130 MS.gene36039:CDS
CATGCTATGACTAACAAAAT+GGG 0.440985 8.1:+52401541 MS.gene36039:CDS
TTCCACACCACATAACACTT+TGG 0.442208 8.1:-52402336 None:intergenic
GAGAAACCCTCAAAGTCATT+TGG 0.450202 8.1:+52400908 MS.gene36039:CDS
ACCAAAGCCATATAAGCATT+TGG 0.450401 8.1:-52401899 None:intergenic
AACTTCACCAAATGACTTTG+AGG 0.452663 8.1:-52400915 None:intergenic
TGTTAGCTTCAAGTCCCCTT+TGG 0.454526 8.1:+52402395 MS.gene36039:CDS
AAAGGTAGCCGAGCGGTACT+TGG 0.454953 8.1:-52403088 None:intergenic
GGACGAAGTTGTTTCTTGCC+AGG 0.463537 8.1:-52402270 None:intergenic
AAGCTAATGTTCGCTATGCC+TGG 0.466581 8.1:+52401806 MS.gene36039:CDS
AACATAGAGCTTCTTCGTCC+TGG 0.466850 8.1:+52402252 MS.gene36039:CDS
GTTAAACAAATGAAGTTGGT+TGG 0.469240 8.1:+52401016 MS.gene36039:CDS
TCCTCATTAATCCACGCAAT+GGG 0.469325 8.1:-52401307 None:intergenic
TCAAAGTTGAGGTCGGTTGT+TGG 0.470486 8.1:+52403313 MS.gene36039:CDS
TGAAGAACCCAATAATATAA+GGG 0.474155 8.1:+52401369 MS.gene36039:CDS
TCTTACAGGAATGAGTTCCT+TGG 0.475724 8.1:+52401672 MS.gene36039:CDS
GGTTGTTAAACAAATGAAGT+TGG 0.477778 8.1:+52401012 MS.gene36039:CDS
ACTTCACCAAATGACTTTGA+GGG 0.481435 8.1:-52400914 None:intergenic
TAATCATTTAAATCTATGTC+TGG 0.481642 8.1:-52401598 None:intergenic
CACTCAATCAAAAGCGAAAG+AGG 0.483070 8.1:+52400939 MS.gene36039:CDS
GTTGAGATTTATCGCAGCTC+AGG 0.483099 8.1:+52401715 MS.gene36039:CDS
TGCCCAATATGCGTTGTTGA+TGG 0.490314 8.1:+52403183 MS.gene36039:CDS
CTGGCTTGCTTGTTCTAAAG+AGG 0.492645 8.1:+52401825 MS.gene36039:CDS
TCCGGAGGATGTTGTTGACT+TGG 0.498921 8.1:+52401168 MS.gene36039:CDS
TTGTTGCATCATCAAACTCT+CGG 0.499366 8.1:-52401498 None:intergenic
AGTCAGATGTTCAACACATT+GGG 0.499388 8.1:-52400966 None:intergenic
AAGCAGGTTGATATCACAAA+AGG 0.499560 8.1:+52401772 MS.gene36039:CDS
ACCCAATAATATAAGGGAGC+AGG 0.499841 8.1:+52401375 MS.gene36039:CDS
TTCCTCATTAATCCACGCAA+TGG 0.504148 8.1:-52401308 None:intergenic
ATCGATAAGAAACATAATAT+GGG 0.506687 8.1:-52403161 None:intergenic
ACCAAGTCAACAACATCCTC+CGG 0.519855 8.1:-52401169 None:intergenic
GGAAGGAACCACGTTTCTCA+TGG 0.529431 8.1:-52403140 None:intergenic
GTTCTATAAGAATGGTGAAT+GGG 0.532062 8.1:+52401138 MS.gene36039:CDS
AAAAGATTTCAAAATCAAGA+AGG 0.532698 8.1:+52401195 MS.gene36039:CDS
GTTGTAGAGGTAGAGTTAGA+TGG 0.534366 8.1:+52401220 MS.gene36039:CDS
GCTGCAGTTATTCGAAAAGC+AGG 0.535279 8.1:+52401756 MS.gene36039:CDS
TGATAACTAACCAGACAAAA+GGG 0.540717 8.1:-52401945 None:intergenic
AATGTCTTAAACGTTAAGCA+AGG 0.542643 8.1:+52403555 MS.gene36039:CDS
ATAATAACTGACCAATGACT+TGG 0.544389 8.1:-52401077 None:intergenic
AATCAAGAAGGCAGTTGTAG+AGG 0.545073 8.1:+52401207 MS.gene36039:CDS
TGTTCTATAAGAATGGTGAA+TGG 0.545690 8.1:+52401137 MS.gene36039:CDS
AAGACATTTGATCCACCACT+TGG 0.550885 8.1:-52403540 None:intergenic
ACATTTGATCCACCACTTGG+TGG 0.559386 8.1:-52403537 None:intergenic
GATATCACAAAAGGAGTTCG+AGG 0.562997 8.1:+52401781 MS.gene36039:CDS
GTTTGCAACAACCCATTGCG+TGG 0.564254 8.1:+52401296 MS.gene36039:CDS
AATATACAATGTTGTATCCA+AGG 0.569110 8.1:+52403357 MS.gene36039:CDS
CAGTCAGATGTTCAACACAT+TGG 0.569289 8.1:-52400967 None:intergenic
ATGATTTCATGTCAAAGTTG+AGG 0.572626 8.1:+52403302 MS.gene36039:CDS
TTAAACGTTAAGCAAGGGTG+AGG 0.573399 8.1:+52403561 MS.gene36039:CDS
ATCCAATGAAATAAATGGGG+TGG 0.575535 8.1:+52401450 MS.gene36039:CDS
TTTCATGTCAAAGTTGAGGT+CGG 0.591171 8.1:+52403306 MS.gene36039:CDS
ACCCATTGCGTGGATTAATG+AGG 0.591261 8.1:+52401306 MS.gene36039:CDS
CAATAATATAAGGGAGCAGG+AGG 0.600211 8.1:+52401378 MS.gene36039:CDS
GCCCAAAGTGTTATGTGGTG+TGG 0.606900 8.1:+52402334 MS.gene36039:CDS
CAATGTGTTGAACATCTGAC+TGG 0.607572 8.1:+52400968 MS.gene36039:CDS
ATAAGAAACATAATATGGGA+AGG 0.614028 8.1:-52403157 None:intergenic
GAAGAACTCCAAGTACCGCT+CGG 0.615550 8.1:+52403080 MS.gene36039:CDS
ATCAGACTTTCTAATGCCCA+AGG 0.616276 8.1:-52401689 None:intergenic
ATGTCTTAAACGTTAAGCAA+GGG 0.616904 8.1:+52403556 MS.gene36039:CDS
AACTAACCAGACAAAAGGGT+GGG 0.620059 8.1:-52401941 None:intergenic
ATGCAGAGACCACCAAGTGG+TGG 0.622327 8.1:+52403528 MS.gene36039:intron
ATATCACAAAAGGAGTTCGA+GGG 0.628195 8.1:+52401782 MS.gene36039:CDS
TTTATCTTCCATGAGAAACG+TGG 0.628233 8.1:+52403132 MS.gene36039:CDS
ACTCAATCAAAAGCGAAAGA+GGG 0.631027 8.1:+52400940 MS.gene36039:CDS
AAGCCATATAAGCATTTGGA+CGG 0.632418 8.1:-52401895 None:intergenic
TCCTATGTCGTGTCATAATG+GGG 0.633571 8.1:+52402229 MS.gene36039:CDS
ATGCTATGACTAACAAAATG+GGG 0.641198 8.1:+52401542 MS.gene36039:CDS
CAGGAAAGTCAATGCAAACA+CGG 0.641871 8.1:+52401734 MS.gene36039:CDS
AGTTTCGGCACCAACAAGTG+TGG 0.645505 8.1:+52400991 MS.gene36039:CDS
ATTGCGTGGATTAATGAGGA+AGG 0.650592 8.1:+52401310 MS.gene36039:CDS
TTGCGAATATGATAATGGGG+TGG 0.654141 8.1:+52402299 MS.gene36039:CDS
TATATCCAATGAAATAAATG+GGG 0.657738 8.1:+52401447 MS.gene36039:CDS
TCAATGCCCAAAGTGTTATG+TGG 0.664510 8.1:+52402329 MS.gene36039:CDS
AGGGTATCGGCATTCTACAG+TGG 0.671871 8.1:+52402746 MS.gene36039:CDS
TCCCCATTATGACACGACAT+AGG 0.673955 8.1:-52402230 None:intergenic
GGTAGAGTTAGATGGCCAAG+AGG 0.674190 8.1:+52401228 MS.gene36039:CDS
TAGTTGCGAATATGATAATG+GGG 0.678638 8.1:+52402296 MS.gene36039:CDS
TATCACAAAAGGAGTTCGAG+GGG 0.685383 8.1:+52401783 MS.gene36039:CDS
TAACTAACCAGACAAAAGGG+TGG 0.690155 8.1:-52401942 None:intergenic
AATAATATAAGGGAGCAGGA+GGG 0.702860 8.1:+52401379 MS.gene36039:CDS
TTCATGCAGAGACCACCAAG+TGG 0.744642 8.1:+52403525 MS.gene36039:intron
TGAATGGGTTGACTATCCGG+AGG 0.807342 8.1:+52401153 MS.gene36039:CDS
AATCGGAAAAGGTAGCCGAG+CGG 0.818281 8.1:-52403095 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCTAGAAATATTTATT+TGG + chr8.1:52403388-52403407 MS.gene36039:intron 10.0%
!! AAATATGTTATGCTTAAATT+TGG + chr8.1:52403440-52403459 MS.gene36039:intron 15.0%
!! AATATGTTATGCTTAAATTT+GGG + chr8.1:52403441-52403460 MS.gene36039:intron 15.0%
!! ATATATCCAATGAAATAAAT+GGG + chr8.1:52401446-52401465 MS.gene36039:CDS 15.0%
!! GAAGATAATAAATATTAGAA+TGG - chr8.1:52402900-52402919 None:intergenic 15.0%
!! TAAATGAAAGTAAGAAAAAA+GGG + chr8.1:52402727-52402746 MS.gene36039:CDS 15.0%
!! TGAATCTTTATATGAAAAAT+TGG + chr8.1:52401624-52401643 MS.gene36039:CDS 15.0%
!! TTAAATGAAAGTAAGAAAAA+AGG + chr8.1:52402726-52402745 MS.gene36039:CDS 15.0%
!! TTCTAATATTTATTATCTTC+TGG + chr8.1:52402900-52402919 MS.gene36039:intron 15.0%
!! TTTATATGAAAAATTGGATA+TGG + chr8.1:52401630-52401649 MS.gene36039:CDS 15.0%
!!! ATACATTCATGTTAATATTT+TGG + chr8.1:52402928-52402947 MS.gene36039:intron 15.0%
!!! TACATTCATGTTAATATTTT+GGG + chr8.1:52402929-52402948 MS.gene36039:intron 15.0%
!!! TATTTTAACTATAAGAAAAG+TGG + chr8.1:52401097-52401116 MS.gene36039:CDS 15.0%
!! AAAAGATTTCAAAATCAAGA+AGG + chr8.1:52401195-52401214 MS.gene36039:CDS 20.0%
!! ATCGATAAGAAACATAATAT+GGG - chr8.1:52403164-52403183 None:intergenic 20.0%
!! ATTGATATTTCTTTCAACAA+CGG + chr8.1:52402643-52402662 MS.gene36039:intron 20.0%
!! CATATATCCAATGAAATAAA+TGG + chr8.1:52401445-52401464 MS.gene36039:CDS 20.0%
!! TAATCATTTAAATCTATGTC+TGG - chr8.1:52401601-52401620 None:intergenic 20.0%
!! TATATCCAATGAAATAAATG+GGG + chr8.1:52401447-52401466 MS.gene36039:CDS 20.0%
!!! ACAAAGAATGTAAAAGTTTT+TGG + chr8.1:52401517-52401536 MS.gene36039:CDS 20.0%
!!! ACATTCATGTTAATATTTTG+GGG + chr8.1:52402930-52402949 MS.gene36039:intron 20.0%
!!! CACGACATAATTTTTTTTAA+AGG - chr8.1:52402443-52402462 None:intergenic 20.0%
!!! GTTATCATAGATTATTTTGT+TGG + chr8.1:52402127-52402146 MS.gene36039:intron 20.0%
!!! TGTTTTTTTTTGTTTTGAAC+AGG + chr8.1:52402693-52402712 MS.gene36039:intron 20.0%
!!! TTTAAGACATAGACATAAAT+TGG - chr8.1:52403223-52403242 None:intergenic 20.0%
!!! TTTTTCCCTAAAATTTTTGT+TGG + chr8.1:52401340-52401359 MS.gene36039:CDS 20.0%
! AACCAAAATTGTTTGGATAA+AGG - chr8.1:52403014-52403033 None:intergenic 25.0%
! AATATACAATGTTGTATCCA+AGG + chr8.1:52403357-52403376 MS.gene36039:CDS 25.0%
! ATAAGAAACATAATATGGGA+AGG - chr8.1:52403160-52403179 None:intergenic 25.0%
! CATCGATAAGAAACATAATA+TGG - chr8.1:52403165-52403184 None:intergenic 25.0%
! CTAGAAAAAAAATTGTACCT+TGG - chr8.1:52403377-52403396 None:intergenic 25.0%
! TCATGTGATTCTTTCTTATT+AGG - chr8.1:52401415-52401434 None:intergenic 25.0%
! TGAAGAACCCAATAATATAA+GGG + chr8.1:52401369-52401388 MS.gene36039:CDS 25.0%
! TTAAGTGCTTTACTCTAATT+CGG + chr8.1:52402584-52402603 MS.gene36039:intron 25.0%
! TTGTCATCAATTATGGAATA+TGG + chr8.1:52401850-52401869 MS.gene36039:CDS 25.0%
!! AAAGTAAGAAAAAAGGGTAT+CGG + chr8.1:52402733-52402752 MS.gene36039:CDS 25.0%
!! CAGAACCAACAAAAATTTTA+GGG - chr8.1:52401348-52401367 None:intergenic 25.0%
!! TATTTTGTTGGATTTCTCAA+AGG + chr8.1:52402139-52402158 MS.gene36039:intron 25.0%
!! TTATAGAACATCAAACGTTT+TGG - chr8.1:52401127-52401146 None:intergenic 25.0%
!!! CAAAAATTTTAGGGAAAAAG+TGG - chr8.1:52401339-52401358 None:intergenic 25.0%
!!! GAAAAGTGTTACATATCAAT+TGG - chr8.1:52402558-52402577 None:intergenic 25.0%
AATGTCTTAAACGTTAAGCA+AGG + chr8.1:52403555-52403574 MS.gene36039:CDS 30.0%
ACATTACCTTCAAAAACCAA+AGG - chr8.1:52402414-52402433 None:intergenic 30.0%
AGAGGAATTGTCATCAATTA+TGG + chr8.1:52401843-52401862 MS.gene36039:CDS 30.0%
AGTAGTTGCGAATATGATAA+TGG + chr8.1:52402294-52402313 MS.gene36039:CDS 30.0%
ATAATAACTGACCAATGACT+TGG - chr8.1:52401080-52401099 None:intergenic 30.0%
ATGATAACTAACCAGACAAA+AGG - chr8.1:52401949-52401968 None:intergenic 30.0%
ATGATTTCATGTCAAAGTTG+AGG + chr8.1:52403302-52403321 MS.gene36039:CDS 30.0%
ATGCTATGACTAACAAAATG+GGG + chr8.1:52401542-52401561 MS.gene36039:CDS 30.0%
ATGTCTTAAACGTTAAGCAA+GGG + chr8.1:52403556-52403575 MS.gene36039:CDS 30.0%
ATTACCTTCAAAAACCAAAG+GGG - chr8.1:52402412-52402431 None:intergenic 30.0%
CATGCTATGACTAACAAAAT+GGG + chr8.1:52401541-52401560 MS.gene36039:CDS 30.0%
CATTACCTTCAAAAACCAAA+GGG - chr8.1:52402413-52402432 None:intergenic 30.0%
CGTTTGATGTTCTATAAGAA+TGG + chr8.1:52401130-52401149 MS.gene36039:CDS 30.0%
CTGAAGAACCCAATAATATA+AGG + chr8.1:52401368-52401387 MS.gene36039:CDS 30.0%
GGTTGTTAAACAAATGAAGT+TGG + chr8.1:52401012-52401031 MS.gene36039:CDS 30.0%
GTAGTTGCGAATATGATAAT+GGG + chr8.1:52402295-52402314 MS.gene36039:CDS 30.0%
GTTCTATAAGAATGGTGAAT+GGG + chr8.1:52401138-52401157 MS.gene36039:CDS 30.0%
TAAAGGCAATAAAGGAAAAG+AGG - chr8.1:52402997-52403016 None:intergenic 30.0%
TACCACAAACCAAAATTGTT+TGG - chr8.1:52403021-52403040 None:intergenic 30.0%
TCATGCTATGACTAACAAAA+TGG + chr8.1:52401540-52401559 MS.gene36039:CDS 30.0%
TGATAACTAACCAGACAAAA+GGG - chr8.1:52401948-52401967 None:intergenic 30.0%
TGTTCTATAAGAATGGTGAA+TGG + chr8.1:52401137-52401156 MS.gene36039:CDS 30.0%
TGTTTGGATAAAGGCAATAA+AGG - chr8.1:52403005-52403024 None:intergenic 30.0%
TTATCATATTCGCAACTACT+TGG - chr8.1:52402294-52402313 None:intergenic 30.0%
! AAAAGCACAGAAAAAGGAAT+CGG - chr8.1:52403115-52403134 None:intergenic 30.0%
! GAAGATAAAAGCACAGAAAA+AGG - chr8.1:52403121-52403140 None:intergenic 30.0%
! GCAGAACCAACAAAAATTTT+AGG - chr8.1:52401349-52401368 None:intergenic 30.0%
! GTAAAAGCTACTAGTGTTTT+TGG + chr8.1:52403049-52403068 MS.gene36039:CDS 30.0%
! GTTAAACAAATGAAGTTGGT+TGG + chr8.1:52401016-52401035 MS.gene36039:CDS 30.0%
! TAGTTGCGAATATGATAATG+GGG + chr8.1:52402296-52402315 MS.gene36039:CDS 30.0%
! TCGGCTATATTTTCTTAACA+TGG - chr8.1:52401482-52401501 None:intergenic 30.0%
! TGCCTTTATCCAAACAATTT+TGG + chr8.1:52403009-52403028 MS.gene36039:intron 30.0%
! TTCATGAGTTTTGCTTCTTA+TGG + chr8.1:52402783-52402802 MS.gene36039:intron 30.0%
!!! ATCCAAACAATTTTGGTTTG+TGG + chr8.1:52403016-52403035 MS.gene36039:intron 30.0%
AAAAAGGTGAACTGTGAACA+TGG - chr8.1:52402176-52402195 None:intergenic 35.0%
AAAAGGTGAACTGTGAACAT+GGG - chr8.1:52402175-52402194 None:intergenic 35.0%
AACTTCACCAAATGACTTTG+AGG - chr8.1:52400918-52400937 None:intergenic 35.0%
AAGCCATATAAGCATTTGGA+CGG - chr8.1:52401898-52401917 None:intergenic 35.0%
AATAATATAAGGGAGCAGGA+GGG + chr8.1:52401379-52401398 MS.gene36039:CDS 35.0%
ACAGAAAAAGGAATCGGAAA+AGG - chr8.1:52403109-52403128 None:intergenic 35.0%
ACCAAAGCCATATAAGCATT+TGG - chr8.1:52401902-52401921 None:intergenic 35.0%
ACTCAATCAAAAGCGAAAGA+GGG + chr8.1:52400940-52400959 MS.gene36039:CDS 35.0%
ACTTCACCAAATGACTTTGA+GGG - chr8.1:52400917-52400936 None:intergenic 35.0%
AGTCAGATGTTCAACACATT+GGG - chr8.1:52400969-52400988 None:intergenic 35.0%
ATACCATCAACAACGCATAT+TGG - chr8.1:52403189-52403208 None:intergenic 35.0%
ATATCACAAAAGGAGTTCGA+GGG + chr8.1:52401782-52401801 MS.gene36039:CDS 35.0%
ATCCAATGAAATAAATGGGG+TGG + chr8.1:52401450-52401469 MS.gene36039:CDS 35.0%
ATCCACCCCATTTATTTCAT+TGG - chr8.1:52401455-52401474 None:intergenic 35.0%
CATGAAGCCAACTAAACATT+AGG - chr8.1:52403511-52403530 None:intergenic 35.0%
CTTGAAGCTAACAACGAATT+CGG - chr8.1:52402388-52402407 None:intergenic 35.0%
GCAATAAAGGAAAAGAGGAT+AGG - chr8.1:52402992-52403011 None:intergenic 35.0%
GCACAGAAAATGTTTCTTAC+AGG + chr8.1:52401658-52401677 MS.gene36039:CDS 35.0%
TACCATCAACAACGCATATT+GGG - chr8.1:52403188-52403207 None:intergenic 35.0%
TATGCCTCCTAATGTTTAGT+TGG + chr8.1:52403501-52403520 MS.gene36039:intron 35.0%
TCCAAATGCTTATATGGCTT+TGG + chr8.1:52401898-52401917 MS.gene36039:CDS 35.0%
TCCTGATATTTCCAAGTCAT+TGG + chr8.1:52401066-52401085 MS.gene36039:CDS 35.0%
TCCTGCTCCCTTATATTATT+GGG - chr8.1:52401379-52401398 None:intergenic 35.0%
TGTTTAACAACCACACTTGT+TGG - chr8.1:52401004-52401023 None:intergenic 35.0%
TTCCTATGTCGTGTCATAAT+GGG + chr8.1:52402228-52402247 MS.gene36039:CDS 35.0%
TTGAAGCTAACAACGAATTC+GGG - chr8.1:52402387-52402406 None:intergenic 35.0%
TTGTTGCATCATCAAACTCT+CGG - chr8.1:52401501-52401520 None:intergenic 35.0%
TTTATCTTCCATGAGAAACG+TGG + chr8.1:52403132-52403151 MS.gene36039:CDS 35.0%
TTTCATGTCAAAGTTGAGGT+CGG + chr8.1:52403306-52403325 MS.gene36039:CDS 35.0%
! ACCAATGACTTGGAAATATC+AGG - chr8.1:52401070-52401089 None:intergenic 35.0%
! TCACCTTTTTCTGATGTTGA+CGG + chr8.1:52402186-52402205 MS.gene36039:CDS 35.0%
!! AAGCAGGTTGATATCACAAA+AGG + chr8.1:52401772-52401791 MS.gene36039:CDS 35.0%
AAAAATCGAGCACAACCTCT+TGG - chr8.1:52401246-52401265 None:intergenic 40.0%
AACTAACCAGACAAAAGGGT+GGG - chr8.1:52401944-52401963 None:intergenic 40.0%
AAGACATTTGATCCACCACT+TGG - chr8.1:52403543-52403562 None:intergenic 40.0%
AATCAAGAAGGCAGTTGTAG+AGG + chr8.1:52401207-52401226 MS.gene36039:CDS 40.0%
ACCCAATAATATAAGGGAGC+AGG + chr8.1:52401375-52401394 MS.gene36039:CDS 40.0%
ATCAGACTTTCTAATGCCCA+AGG - chr8.1:52401692-52401711 None:intergenic 40.0%
CAATAATATAAGGGAGCAGG+AGG + chr8.1:52401378-52401397 MS.gene36039:CDS 40.0%
CAATGTGTTGAACATCTGAC+TGG + chr8.1:52400968-52400987 MS.gene36039:CDS 40.0%
CACTCAATCAAAAGCGAAAG+AGG + chr8.1:52400939-52400958 MS.gene36039:CDS 40.0%
CAGGAAAGTCAATGCAAACA+CGG + chr8.1:52401734-52401753 MS.gene36039:CDS 40.0%
CAGTCAGATGTTCAACACAT+TGG - chr8.1:52400970-52400989 None:intergenic 40.0%
CTCCTGCTCCCTTATATTAT+TGG - chr8.1:52401380-52401399 None:intergenic 40.0%
CTTACAGGAATGAGTTCCTT+GGG + chr8.1:52401673-52401692 MS.gene36039:CDS 40.0%
CTTCCGTCAACATCAGAAAA+AGG - chr8.1:52402192-52402211 None:intergenic 40.0%
GAAGCCAACTAAACATTAGG+AGG - chr8.1:52403508-52403527 None:intergenic 40.0%
GAGAAACCCTCAAAGTCATT+TGG + chr8.1:52400908-52400927 MS.gene36039:CDS 40.0%
GATATCACAAAAGGAGTTCG+AGG + chr8.1:52401781-52401800 MS.gene36039:CDS 40.0%
GTTCCTATGTCGTGTCATAA+TGG + chr8.1:52402227-52402246 MS.gene36039:CDS 40.0%
GTTGTAGAGGTAGAGTTAGA+TGG + chr8.1:52401220-52401239 MS.gene36039:CDS 40.0%
TAACTAACCAGACAAAAGGG+TGG - chr8.1:52401945-52401964 None:intergenic 40.0%
TATCACAAAAGGAGTTCGAG+GGG + chr8.1:52401783-52401802 MS.gene36039:CDS 40.0%
TCCACACCACATAACACTTT+GGG - chr8.1:52402338-52402357 None:intergenic 40.0%
TCCTATGTCGTGTCATAATG+GGG + chr8.1:52402229-52402248 MS.gene36039:CDS 40.0%
TCCTCATTAATCCACGCAAT+GGG - chr8.1:52401310-52401329 None:intergenic 40.0%
TCTCCGTCCAAATGCTTATA+TGG + chr8.1:52401892-52401911 MS.gene36039:CDS 40.0%
TCTTACAGGAATGAGTTCCT+TGG + chr8.1:52401672-52401691 MS.gene36039:CDS 40.0%
TGAACATCTGACTGGAGTTT+CGG + chr8.1:52400976-52400995 MS.gene36039:CDS 40.0%
TTCCACACCACATAACACTT+TGG - chr8.1:52402339-52402358 None:intergenic 40.0%
TTCCTCATTAATCCACGCAA+TGG - chr8.1:52401311-52401330 None:intergenic 40.0%
! ACACTAGTAGCTTTTACCTG+AGG - chr8.1:52403046-52403065 None:intergenic 40.0%
! ATTGCGTGGATTAATGAGGA+AGG + chr8.1:52401310-52401329 MS.gene36039:CDS 40.0%
! TCAATGCCCAAAGTGTTATG+TGG + chr8.1:52402329-52402348 MS.gene36039:CDS 40.0%
! TTTTCTGATGTTGACGGAAG+TGG + chr8.1:52402192-52402211 MS.gene36039:CDS 40.0%
!! TTGCGAATATGATAATGGGG+TGG + chr8.1:52402299-52402318 MS.gene36039:CDS 40.0%
!!! AAGTCCCCTTTGGTTTTTGA+AGG + chr8.1:52402405-52402424 MS.gene36039:CDS 40.0%
AACATAGAGCTTCTTCGTCC+TGG + chr8.1:52402252-52402271 MS.gene36039:CDS 45.0%
AAGCTAATGTTCGCTATGCC+TGG + chr8.1:52401806-52401825 MS.gene36039:CDS 45.0%
ACATTTGATCCACCACTTGG+TGG - chr8.1:52403540-52403559 None:intergenic 45.0%
ACCAAGTCAACAACATCCTC+CGG - chr8.1:52401172-52401191 None:intergenic 45.0%
GCTGCAGTTATTCGAAAAGC+AGG + chr8.1:52401756-52401775 MS.gene36039:CDS 45.0%
GTTGAGATTTATCGCAGCTC+AGG + chr8.1:52401715-52401734 MS.gene36039:CDS 45.0%
TCAAAGTTGAGGTCGGTTGT+TGG + chr8.1:52403313-52403332 MS.gene36039:CDS 45.0%
TCCCCATTATGACACGACAT+AGG - chr8.1:52402233-52402252 None:intergenic 45.0%
TGCCCAATATGCGTTGTTGA+TGG + chr8.1:52403183-52403202 MS.gene36039:CDS 45.0%
! ACCCATTGCGTGGATTAATG+AGG + chr8.1:52401306-52401325 MS.gene36039:CDS 45.0%
! TGTTAGCTTCAAGTCCCCTT+TGG + chr8.1:52402395-52402414 MS.gene36039:CDS 45.0%
!! CTCTTTAGAACAAGCAAGCC+AGG - chr8.1:52401827-52401846 None:intergenic 45.0%
!! CTGGCTTGCTTGTTCTAAAG+AGG + chr8.1:52401825-52401844 MS.gene36039:CDS 45.0%
!! TGGTGAATGGGTTGACTATC+CGG + chr8.1:52401150-52401169 MS.gene36039:CDS 45.0%
!! TTTGGTTTGTGGTATGCCTC+AGG + chr8.1:52403027-52403046 MS.gene36039:intron 45.0%
AATCGGAAAAGGTAGCCGAG+CGG - chr8.1:52403098-52403117 None:intergenic 50.0%
AGTTTCGGCACCAACAAGTG+TGG + chr8.1:52400991-52401010 MS.gene36039:CDS 50.0%
GGAAGGAACCACGTTTCTCA+TGG - chr8.1:52403143-52403162 None:intergenic 50.0%
GGTAGAGTTAGATGGCCAAG+AGG + chr8.1:52401228-52401247 MS.gene36039:CDS 50.0%
GTTTGCAACAACCCATTGCG+TGG + chr8.1:52401296-52401315 MS.gene36039:CDS 50.0%
TTCATGCAGAGACCACCAAG+TGG + chr8.1:52403525-52403544 MS.gene36039:intron 50.0%
! CTGTTACCCACCCTTTTGTC+TGG + chr8.1:52401935-52401954 MS.gene36039:CDS 50.0%
! GAAGAACTCCAAGTACCGCT+CGG + chr8.1:52403080-52403099 MS.gene36039:CDS 50.0%
! GCCCAAAGTGTTATGTGGTG+TGG + chr8.1:52402334-52402353 MS.gene36039:CDS 50.0%
! TCCGGAGGATGTTGTTGACT+TGG + chr8.1:52401168-52401187 MS.gene36039:CDS 50.0%
!! AGGGTATCGGCATTCTACAG+TGG + chr8.1:52402746-52402765 MS.gene36039:CDS 50.0%
!! GGACGAAGTTGTTTCTTGCC+AGG - chr8.1:52402273-52402292 None:intergenic 50.0%
!! TGAATGGGTTGACTATCCGG+AGG + chr8.1:52401153-52401172 MS.gene36039:CDS 50.0%
AAAGGTAGCCGAGCGGTACT+TGG - chr8.1:52403091-52403110 None:intergenic 55.0%
ATGCAGAGACCACCAAGTGG+TGG + chr8.1:52403528-52403547 MS.gene36039:intron 55.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 52400902 52403581 52400902 ID=MS.gene36039
chr8.1 mRNA 52400902 52403581 52400902 ID=MS.gene36039.t1;Parent=MS.gene36039
chr8.1 exon 52400902 52401956 52400902 ID=MS.gene36039.t1.exon1;Parent=MS.gene36039.t1
chr8.1 CDS 52400902 52401956 52400902 ID=cds.MS.gene36039.t1;Parent=MS.gene36039.t1
chr8.1 exon 52402185 52402426 52402185 ID=MS.gene36039.t1.exon2;Parent=MS.gene36039.t1
chr8.1 CDS 52402185 52402426 52402185 ID=cds.MS.gene36039.t1;Parent=MS.gene36039.t1
chr8.1 exon 52402715 52402773 52402715 ID=MS.gene36039.t1.exon3;Parent=MS.gene36039.t1
chr8.1 CDS 52402715 52402773 52402715 ID=cds.MS.gene36039.t1;Parent=MS.gene36039.t1
chr8.1 exon 52403049 52403204 52403049 ID=MS.gene36039.t1.exon4;Parent=MS.gene36039.t1
chr8.1 CDS 52403049 52403204 52403049 ID=cds.MS.gene36039.t1;Parent=MS.gene36039.t1
chr8.1 exon 52403283 52403378 52403283 ID=MS.gene36039.t1.exon5;Parent=MS.gene36039.t1
chr8.1 CDS 52403283 52403378 52403283 ID=cds.MS.gene36039.t1;Parent=MS.gene36039.t1
chr8.1 exon 52403534 52403581 52403534 ID=MS.gene36039.t1.exon6;Parent=MS.gene36039.t1
chr8.1 CDS 52403534 52403581 52403534 ID=cds.MS.gene36039.t1;Parent=MS.gene36039.t1
Gene Sequence

>MS.gene36039

ATGGAAGAGAAACCCTCAAAGTCATTTGGTGAAGTTGCACTCAATCAAAAGCGAAAGAGGGATACCCAATGTGTTGAACATCTGACTGGAGTTTCGGCACCAACAAGTGTGGTTGTTAAACAAATGAAGTTGGTTGGAGATGTATGCAAATCAGATGACTCTTGTCCTGATATTTCCAAGTCATTGGTCAGTTATTATTTTAACTATAAGAAAAGTGGAATACCAAAACGTTTGATGTTCTATAAGAATGGTGAATGGGTTGACTATCCGGAGGATGTTGTTGACTTGGTTAAAAAAGATTTCAAAATCAAGAAGGCAGTTGTAGAGGTAGAGTTAGATGGCCAAGAGGTTGTGCTCGATTTTTTGCATATGTATAATGTGAATTTGAAAACATGTTTGCAACAACCCATTGCGTGGATTAATGAGGAAGGAAACCACTTTTTCCCTAAAATTTTTGTTGGTTCTGCTGAAGAACCCAATAATATAAGGGAGCAGGAGGGTGAAGAAAGTCCTAATAAGAAAGAATCACATGAGACAAAACTACATATATCCAATGAAATAAATGGGGTGGATGAATCCATGTTAAGAAAATATAGCCGAGAGTTTGATGATGCAACAAAGAATGTAAAAGTTTTTGGTCATGCTATGACTAACAAAATGGGGATTCGAAAGTTTGCTATAGATATTAACAAAGAGCCAGACATAGATTTAAATGATTATTCTGAATCTTTATATGAAAAATTGGATATGGATTCTGCACAGAAAATGTTTCTTACAGGAATGAGTTCCTTGGGCATTAGAAAGTCTGATATAGTTGAGATTTATCGCAGCTCAGGAAAGTCAATGCAAACACGGCTGCAGTTATTCGAAAAGCAGGTTGATATCACAAAAGGAGTTCGAGGGGAAGCTAATGTTCGCTATGCCTGGCTTGCTTGTTCTAAAGAGGAATTGTCATCAATTATGGAATATGGACTTAGTCACTATAAACTCTCTCCGTCCAAATGCTTATATGGCTTTGGTGTTCATCTTGCAGCTGTTACCCACCCTTTTGTCTGGTTAGTTATCATATGATCAACATTGAACTTCATACATTATTATTATCATTATCATCATCATCATCATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATCATCATCATCATCATCATCATCATTATCATCATCATCTAATATGTTATCATAGATTATTTTGTTGGATTTCTCAAAGGATTTAGTTTTCCCATGTTCACAGTTCACCTTTTTCTGATGTTGACGGAAGTGGAATTAAGCATATGTTCCTATGTCGTGTCATAATGGGGAACATAGAGCTTCTTCGTCCTGGCAAGAAACAACTTCGTCCAAGTAGTTGCGAATATGATAATGGGGTGGATGACATTCAATGCCCAAAGTGTTATGTGGTGTGGAACATGAATATGAACACGCATATCTATCCCGAATTCGTTGTTAGCTTCAAGTCCCCTTTGGTTTTTGAAGGTAATGTAATGTTCCTTTAAAAAAAATTATGTCGTGTGTCAATGTTAGATATATGCTTTTTTATGAAAACATGCTTTGCATTTTAGCATTACATAATTATCACTGAAGCGTGAAAGAGTTAATACAAACCAATTGATATGTAACACTTTTCAACTTATTAAGTGCTTTACTCTAATTCGGAAAAACAATCATTTGTGTATGTTGCTAAGTTGTATGATTGATATTTCTTTCAACAACGGAAAAATCTTCTTGATCACGACACTTGATGTTTTTTTTTGTTTTGAACAGGAAATGTTTGTTTAAATGAAAGTAAGAAAAAAGGGTATCGGCATTCTACAGTGGACACTGTAAGCTTTTTCATGAGTTTTGCTTCTTATGGTTTTCTAGTTTTCTATGTAAAAGACAATGCTATCATCAATTTTTTTAACTGTTTTTAAAATCTATCAATGATTTATTTAGTGTACAACTTTCCATTCTAATATTTATTATCTTCTGGTTTTAATACATTCATGTTAATATTTTGGGGCATTCATCTTTTGAGATTTATCTTTTAGTTTTTAATCCTATCCTCTTTTCCTTTATTGCCTTTATCCAAACAATTTTGGTTTGTGGTATGCCTCAGGTAAAAGCTACTAGTGTTTTTGGTAACATCAGAAGAACTCCAAGTACCGCTCGGCTACCTTTTCCGATTCCTTTTTCTGTGCTTTTATCTTCCATGAGAAACGTGGTTCCTTCCCATATTATGTTTCTTATCGATGCCCAATATGCGTTGTTGATGGTATGCAAATGATGTCCAATTTATGTCTATGTCTTAAATAGTAAAATATCACTAATGTATCATGTCGTGCTTGTGCAGTCGAATAAGATTTCACGTGATGATTTCATGTCAAAGTTGAGGTCGGTTGTTGGAAATGATGTACTGAAATCTGCAATATACAATGTTGTATCCAAGGTACAATTTTTTTTCTAGAAATATTTATTTGGATTGCTATATGTATTGATCTTATCTCGTTAAATATGTTATGCTTAAATTTGGGATTGTGTAATCATATGATCTATCTCTTGCAATTTGATTATGCCTCCTAATGTTTAGTTGGCTTCATGCAGAGACCACCAAGTGGTGGATCAAATGTCTTAAACGTTAAGCAAGGGTGA

Protein sequence

>MS.gene36039.t1

MEEKPSKSFGEVALNQKRKRDTQCVEHLTGVSAPTSVVVKQMKLVGDVCKSDDSCPDISKSLVSYYFNYKKSGIPKRLMFYKNGEWVDYPEDVVDLVKKDFKIKKAVVEVELDGQEVVLDFLHMYNVNLKTCLQQPIAWINEEGNHFFPKIFVGSAEEPNNIREQEGEESPNKKESHETKLHISNEINGVDESMLRKYSREFDDATKNVKVFGHAMTNKMGIRKFAIDINKEPDIDLNDYSESLYEKLDMDSAQKMFLTGMSSLGIRKSDIVEIYRSSGKSMQTRLQLFEKQVDITKGVRGEANVRYAWLACSKEELSSIMEYGLSHYKLSPSKCLYGFGVHLAAVTHPFVCSPFSDVDGSGIKHMFLCRVIMGNIELLRPGKKQLRPSSCEYDNGVDDIQCPKCYVVWNMNMNTHIYPEFVVSFKSPLVFEGNVCLNESKKKGYRHSTVDTVKATSVFGNIRRTPSTARLPFPIPFSVLLSSMRNVVPSHIMFLIDAQYALLMSNKISRDDFMSKLRSVVGNDVLKSAIYNVVSKRPPSGGSNVLNVKQG