Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046455.t1 | XP_003621296.1 | 80.3 | 537 | 102 | 1 | 1 | 537 | 1 | 533 | 4.00E-249 | 870.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046455.t1 | Q8RY59 | 36.3 | 554 | 314 | 11 | 11 | 530 | 15 | 563 | 2.6e-84 | 314.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046455.t1 | A2Q3R6 | 80.3 | 537 | 102 | 1 | 1 | 537 | 1 | 533 | 2.9e-249 | 870.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene070678 | MS.gene046455 | PPI |
| MS.gene046455 | MS.gene001066 | PPI |
| MS.gene032270 | MS.gene046455 | PPI |
| MS.gene029308 | MS.gene046455 | PPI |
| MS.gene065039 | MS.gene046455 | PPI |
| MS.gene069103 | MS.gene046455 | PPI |
| MS.gene79552 | MS.gene046455 | PPI |
| MS.gene36039 | MS.gene046455 | PPI |
| MS.gene046409 | MS.gene046455 | PPI |
| MS.gene027783 | MS.gene046455 | PPI |
| MS.gene34237 | MS.gene046455 | PPI |
| MS.gene070621 | MS.gene046455 | PPI |
| MS.gene046455 | MS.gene069103 | PPI |
| MS.gene76207 | MS.gene046455 | PPI |
| MS.gene001066 | MS.gene046455 | PPI |
| MS.gene007901 | MS.gene046455 | PPI |
| MS.gene057563 | MS.gene046455 | PPI |
| MS.gene046455 | MS.gene029308 | PPI |
| MS.gene74956 | MS.gene046455 | PPI |
| MS.gene021778 | MS.gene046455 | PPI |
| MS.gene046444 | MS.gene046455 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046455.t1 | MTR_7g011550 | 80.261 | 537 | 102 | 1 | 1 | 537 | 1 | 533 | 0.0 | 895 |
| MS.gene046455.t1 | MTR_1g112330 | 44.755 | 572 | 277 | 7 | 1 | 538 | 1 | 567 | 2.67e-157 | 461 |
| MS.gene046455.t1 | MTR_1g112330 | 44.737 | 570 | 277 | 8 | 1 | 538 | 1 | 564 | 2.97e-156 | 458 |
| MS.gene046455.t1 | MTR_5g032190 | 43.761 | 569 | 277 | 10 | 1 | 536 | 1 | 559 | 7.70e-151 | 444 |
| MS.gene046455.t1 | MTR_1g112330 | 49.783 | 460 | 199 | 6 | 1 | 433 | 1 | 455 | 3.91e-144 | 423 |
| MS.gene046455.t1 | MTR_5g032190 | 47.903 | 453 | 211 | 6 | 1 | 433 | 1 | 448 | 1.91e-138 | 409 |
| MS.gene046455.t1 | MTR_5g032190 | 47.903 | 453 | 211 | 6 | 1 | 433 | 1 | 448 | 6.04e-138 | 408 |
| MS.gene046455.t1 | MTR_5g029580 | 55.287 | 331 | 141 | 3 | 210 | 537 | 23 | 349 | 1.93e-122 | 364 |
| MS.gene046455.t1 | MTR_7g011880 | 59.211 | 152 | 37 | 3 | 358 | 509 | 60 | 186 | 6.66e-49 | 167 |
| MS.gene046455.t1 | MTR_2g090130 | 49.333 | 150 | 41 | 2 | 254 | 403 | 103 | 217 | 8.19e-38 | 139 |
| MS.gene046455.t1 | MTR_2g090130 | 46.203 | 158 | 36 | 3 | 1 | 156 | 1 | 111 | 4.04e-31 | 120 |
| MS.gene046455.t1 | MTR_7g011640 | 57.252 | 131 | 37 | 3 | 90 | 219 | 15 | 127 | 1.90e-37 | 135 |
| MS.gene046455.t1 | MTR_3g077870 | 31.295 | 278 | 149 | 8 | 257 | 530 | 67 | 306 | 1.07e-34 | 133 |
| MS.gene046455.t1 | MTR_4g105740 | 30.435 | 299 | 166 | 10 | 246 | 538 | 43 | 305 | 1.32e-33 | 130 |
| MS.gene046455.t1 | MTR_4g105740 | 30.303 | 297 | 165 | 10 | 246 | 536 | 43 | 303 | 1.13e-32 | 127 |
| MS.gene046455.t1 | MTR_8g088250 | 28.477 | 302 | 171 | 9 | 244 | 532 | 12 | 281 | 1.36e-28 | 115 |
| MS.gene046455.t1 | MTR_7g061850 | 44.882 | 127 | 61 | 1 | 184 | 310 | 6 | 123 | 6.90e-28 | 108 |
| MS.gene046455.t1 | MTR_7g061730 | 67.308 | 52 | 17 | 0 | 487 | 538 | 1 | 52 | 9.75e-16 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046455.t1 | AT1G32230 | 36.814 | 565 | 301 | 12 | 11 | 533 | 15 | 565 | 4.29e-105 | 327 |
| MS.gene046455.t1 | AT1G32230 | 36.814 | 565 | 301 | 12 | 11 | 533 | 15 | 565 | 8.55e-105 | 327 |
| MS.gene046455.t1 | AT1G32230 | 36.814 | 565 | 301 | 12 | 11 | 533 | 15 | 565 | 8.55e-105 | 327 |
| MS.gene046455.t1 | AT1G32230 | 36.814 | 565 | 301 | 12 | 11 | 533 | 15 | 565 | 8.55e-105 | 327 |
| MS.gene046455.t1 | AT1G32230 | 36.814 | 565 | 301 | 12 | 11 | 533 | 15 | 565 | 8.55e-105 | 327 |
| MS.gene046455.t1 | AT1G32230 | 36.572 | 566 | 302 | 12 | 11 | 533 | 15 | 566 | 9.57e-105 | 326 |
| MS.gene046455.t1 | AT2G35510 | 36.620 | 497 | 275 | 10 | 58 | 526 | 71 | 555 | 2.33e-95 | 301 |
| MS.gene046455.t1 | AT2G35510 | 36.620 | 497 | 275 | 10 | 58 | 526 | 71 | 555 | 2.33e-95 | 301 |
| MS.gene046455.t1 | AT2G35510 | 40.420 | 381 | 207 | 7 | 58 | 426 | 71 | 443 | 5.72e-90 | 284 |
| MS.gene046455.t1 | AT1G23550 | 33.333 | 285 | 144 | 9 | 261 | 532 | 63 | 314 | 2.22e-36 | 138 |
| MS.gene046455.t1 | AT5G62520 | 28.276 | 290 | 168 | 5 | 243 | 526 | 41 | 296 | 1.97e-34 | 132 |
| MS.gene046455.t1 | AT1G70440 | 30.686 | 277 | 151 | 5 | 257 | 526 | 54 | 296 | 5.24e-33 | 128 |
| MS.gene046455.t1 | AT1G70440 | 30.686 | 277 | 151 | 5 | 257 | 526 | 54 | 296 | 5.24e-33 | 128 |
| MS.gene046455.t1 | AT5G62520 | 34.197 | 193 | 119 | 3 | 243 | 429 | 41 | 231 | 5.29e-29 | 115 |
| MS.gene046455.t1 | AT3G47720 | 29.289 | 239 | 125 | 6 | 298 | 536 | 117 | 311 | 1.82e-22 | 98.6 |
Find 0 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTTATTTTGAAC+AGG | + | 57139:72681-72700 | MS.gene046455:intron | 10.0% |
| !! | ACACTAAATAAATTATTGTT+AGG | - | 57139:72858-72877 | None:intergenic | 15.0% |
| !! | ATATATCCAATGAAATAAAT+GGG | + | 57139:71570-71589 | MS.gene046455:CDS | 15.0% |
| !! | GAAGATAAAAAATATTAGAA+TGG | - | 57139:72889-72908 | None:intergenic | 15.0% |
| !! | TAAAAACGGTTAAAAAAAAT+TGG | - | 57139:72832-72851 | None:intergenic | 15.0% |
| !! | TGAATCTTTATATGAAAAAT+TGG | + | 57139:71748-71767 | MS.gene046455:CDS | 15.0% |
| !!! | GTTATCATAGATTATTTTAT+TGG | + | 57139:72149-72168 | MS.gene046455:intron | 15.0% |
| !!! | TATTTTAACTATAAGAAAAG+TGG | + | 57139:71221-71240 | MS.gene046455:CDS | 15.0% |
| !!! | TGTTTCTAGAAATATTTATT+TGG | + | 57139:73378-73397 | MS.gene046455:intron | 15.0% |
| !!! | TTATTGTTAGGTTTTAAAAA+CGG | - | 57139:72846-72865 | None:intergenic | 15.0% |
| !!! | TTCTAATATTTTTTATCTTC+TGG | + | 57139:72889-72908 | MS.gene046455:intron | 15.0% |
| !! | AAAAGATTTCAAAATCAAGA+AGG | + | 57139:71319-71338 | MS.gene046455:CDS | 20.0% |
| !! | CATATATCCAATGAAATAAA+TGG | + | 57139:71569-71588 | MS.gene046455:CDS | 20.0% |
| !! | TAAATGAGAGTAAGAAAAAA+GGG | + | 57139:72715-72734 | MS.gene046455:CDS | 20.0% |
| !! | TAATCATTTAAATCTATGTC+TGG | - | 57139:71725-71744 | None:intergenic | 20.0% |
| !! | TAGAACCAACAAAAAATTTA+GGG | - | 57139:71472-71491 | None:intergenic | 20.0% |
| !! | TATATCCAATGAAATAAATG+GGG | + | 57139:71571-71590 | MS.gene046455:CDS | 20.0% |
| !! | TTAAATGAGAGTAAGAAAAA+AGG | + | 57139:72714-72733 | MS.gene046455:CDS | 20.0% |
| !! | TTTATATGAAAAATTGGATG+TGG | + | 57139:71754-71773 | MS.gene046455:CDS | 20.0% |
| !!! | TATTTTATTGGATTTCTCAA+AGG | + | 57139:72161-72180 | MS.gene046455:intron | 20.0% |
| !!! | TTTTTCCCTAAATTTTTTGT+TGG | + | 57139:71464-71483 | MS.gene046455:CDS | 20.0% |
| ! | AAAATCATGGAAAAAGGAAT+GGG | - | 57139:73105-73124 | None:intergenic | 25.0% |
| ! | AACCAAAATTGTTTGGATAA+AGG | - | 57139:73004-73023 | None:intergenic | 25.0% |
| ! | ATAAGAAACATAATATGGGA+AGG | - | 57139:73150-73169 | None:intergenic | 25.0% |
| ! | ATAATAATTGACCAATGACT+TGG | - | 57139:71204-71223 | None:intergenic | 25.0% |
| ! | GAAGATAAAATCATGGAAAA+AGG | - | 57139:73111-73130 | None:intergenic | 25.0% |
| ! | GCAATAAAGGAAAACAATAT+AGG | - | 57139:72982-73001 | None:intergenic | 25.0% |
| ! | GTAGAACCAACAAAAAATTT+AGG | - | 57139:71473-71492 | None:intergenic | 25.0% |
| ! | GTCGATAAGAAACATAATAT+GGG | - | 57139:73154-73173 | None:intergenic | 25.0% |
| ! | TAAAATCATGGAAAAAGGAA+TGG | - | 57139:73106-73125 | None:intergenic | 25.0% |
| ! | TGAAGAACCCAATAATATAA+GGG | + | 57139:71493-71512 | MS.gene046455:CDS | 25.0% |
| ! | TTAAGTGCTTTACTCTATTT+CGG | + | 57139:72572-72591 | MS.gene046455:intron | 25.0% |
| !! | ACATTCATGTGCAATATTTT+GGG | + | 57139:72919-72938 | MS.gene046455:intron | 25.0% |
| !! | TACATTCATGTGCAATATTT+TGG | + | 57139:72918-72937 | MS.gene046455:intron | 25.0% |
| !! | TTATAGAACATCAAACGTTT+TGG | - | 57139:71251-71270 | None:intergenic | 25.0% |
| !!! | AGGACACAATTTTTTTCTAA+AGG | - | 57139:72465-72484 | None:intergenic | 25.0% |
| !!! | ATCTTTTGAGATTTATCTTC+TGG | + | 57139:72948-72967 | MS.gene046455:intron | 25.0% |
| AAAAATCTAGCACAACTTCT+TGG | - | 57139:71370-71389 | None:intergenic | 30.0% | |
| AAACCATATATGCATTTGGA+CGG | - | 57139:72022-72041 | None:intergenic | 30.0% | |
| AATAATATAAGGGAGCAGAA+GGG | + | 57139:71503-71522 | MS.gene046455:CDS | 30.0% | |
| AATATGCAATGTTGTATCCA+AGG | + | 57139:73347-73366 | MS.gene046455:CDS | 30.0% | |
| ACAAAGAATGTGAAAGTTGT+TGG | + | 57139:71641-71660 | MS.gene046455:CDS | 30.0% | |
| ACATTACCTTCAAAAACCAA+AGG | - | 57139:72436-72455 | None:intergenic | 30.0% | |
| ACCAAAACCATATATGCATT+TGG | - | 57139:72026-72045 | None:intergenic | 30.0% | |
| ACTAAATCAAAAGCGAAAGA+GGG | + | 57139:71064-71083 | MS.gene046455:CDS | 30.0% | |
| AGTAGTTGCGAATATGATAA+TGG | + | 57139:72316-72335 | MS.gene046455:CDS | 30.0% | |
| AGTCAGATGTTTAACACATT+GGG | - | 57139:71093-71112 | None:intergenic | 30.0% | |
| ATTACCTTCAAAAACCAAAG+GGG | - | 57139:72434-72453 | None:intergenic | 30.0% | |
| ATTATAACTAACCAGACAGA+AGG | - | 57139:72073-72092 | None:intergenic | 30.0% | |
| CATATATCTAACATTGACAC+AGG | - | 57139:72485-72504 | None:intergenic | 30.0% | |
| CATTACCTTCAAAAACCAAA+GGG | - | 57139:72435-72454 | None:intergenic | 30.0% | |
| CGTCGATAAGAAACATAATA+TGG | - | 57139:73155-73174 | None:intergenic | 30.0% | |
| CGTTTGATGTTCTATAAGAA+TGG | + | 57139:71254-71273 | MS.gene046455:CDS | 30.0% | |
| CTAGAAACAAAATTGTACCT+TGG | - | 57139:73367-73386 | None:intergenic | 30.0% | |
| CTGAAGAACCCAATAATATA+AGG | + | 57139:71492-71511 | MS.gene046455:CDS | 30.0% | |
| CTTGAAGCTAACAATGAATT+CGG | - | 57139:72410-72429 | None:intergenic | 30.0% | |
| GTAGTTGCGAATATGATAAT+GGG | + | 57139:72317-72336 | MS.gene046455:CDS | 30.0% | |
| GTTCTATAAGAATGGTGAAT+GGG | + | 57139:71262-71281 | MS.gene046455:CDS | 30.0% | |
| TAATTATCACTGAAGTGTGA+AGG | + | 57139:72543-72562 | MS.gene046455:intron | 30.0% | |
| TACCACAAACCAAAATTGTT+TGG | - | 57139:73011-73030 | None:intergenic | 30.0% | |
| TCATGTGGTTCTTTCTTATT+AGG | - | 57139:71539-71558 | None:intergenic | 30.0% | |
| TCTCATGGAAGATAAAATCA+TGG | - | 57139:73118-73137 | None:intergenic | 30.0% | |
| TGTTCTATAAGAATGGTGAA+TGG | + | 57139:71261-71280 | MS.gene046455:CDS | 30.0% | |
| TGTTTAACAAGCACATTTGT+TGG | - | 57139:71128-71147 | None:intergenic | 30.0% | |
| TGTTTGGATAAAGGCAATAA+AGG | - | 57139:72995-73014 | None:intergenic | 30.0% | |
| TTATAACTAACCAGACAGAA+GGG | - | 57139:72072-72091 | None:intergenic | 30.0% | |
| TTATCATATTCGCAACTACT+TGG | - | 57139:72316-72335 | None:intergenic | 30.0% | |
| TTCTGCTCCCTTATATTATT+GGG | - | 57139:71503-71522 | None:intergenic | 30.0% | |
| TTGAAGCTAACAATGAATTC+GGG | - | 57139:72409-72428 | None:intergenic | 30.0% | |
| ! | AGAGTAAGAAAAAAGGGTAT+CGG | + | 57139:72721-72740 | MS.gene046455:CDS | 30.0% |
| ! | ATGTGCTTGTTAAACAAATG+AGG | + | 57139:71132-71151 | MS.gene046455:CDS | 30.0% |
| ! | CATTCATGTGCAATATTTTG+GGG | + | 57139:72920-72939 | MS.gene046455:intron | 30.0% |
| ! | TAGTTGCGAATATGATAATG+GGG | + | 57139:72318-72337 | MS.gene046455:CDS | 30.0% |
| ! | TCCAAATGCATATATGGTTT+TGG | + | 57139:72022-72041 | MS.gene046455:CDS | 30.0% |
| ! | TGCCTTTATCCAAACAATTT+TGG | + | 57139:72999-73018 | MS.gene046455:intron | 30.0% |
| ! | TTCATGAGTTTTGCTTCTTA+TGG | + | 57139:72771-72790 | MS.gene046455:intron | 30.0% |
| ! | TTGTCAACAATGATGGAATA+TGG | + | 57139:71974-71993 | MS.gene046455:CDS | 30.0% |
| !!! | ATATGTAGTTTTGTCTCATG+TGG | - | 57139:71554-71573 | None:intergenic | 30.0% |
| !!! | ATCCAAACAATTTTGGTTTG+TGG | + | 57139:73006-73025 | MS.gene046455:intron | 30.0% |
| AAGAAGGTGAACTGTTAACA+TGG | - | 57139:72198-72217 | None:intergenic | 35.0% | |
| AGAAGGTGAACTGTTAACAT+GGG | - | 57139:72197-72216 | None:intergenic | 35.0% | |
| AGAGGAATTGTCAACAATGA+TGG | + | 57139:71967-71986 | MS.gene046455:CDS | 35.0% | |
| ATACCATCAACAACGCATAT+TGG | - | 57139:73179-73198 | None:intergenic | 35.0% | |
| ATATCACAAAAGGAGTTCGA+GGG | + | 57139:71906-71925 | MS.gene046455:CDS | 35.0% | |
| ATCCAATGAAATAAATGGGG+TGG | + | 57139:71574-71593 | MS.gene046455:CDS | 35.0% | |
| ATCCACCCCATTTATTTCAT+TGG | - | 57139:71579-71598 | None:intergenic | 35.0% | |
| ATGCTATGACTAACAAAACG+GGG | + | 57139:71666-71685 | MS.gene046455:CDS | 35.0% | |
| ATGGAAAAAGGAATGGGAAA+AGG | - | 57139:73099-73118 | None:intergenic | 35.0% | |
| CAAGAAGCCAACTAAACATT+AGG | - | 57139:73501-73520 | None:intergenic | 35.0% | |
| CAATAATATAAGGGAGCAGA+AGG | + | 57139:71502-71521 | MS.gene046455:CDS | 35.0% | |
| CAATGTGTTAAACATCTGAC+TGG | + | 57139:71092-71111 | MS.gene046455:CDS | 35.0% | |
| CACTAAATCAAAAGCGAAAG+AGG | + | 57139:71063-71082 | MS.gene046455:CDS | 35.0% | |
| CAGTCAGATGTTTAACACAT+TGG | - | 57139:71094-71113 | None:intergenic | 35.0% | |
| CATGCTATGACTAACAAAAC+GGG | + | 57139:71665-71684 | MS.gene046455:CDS | 35.0% | |
| CCATGCTATGACTAACAAAA+CGG | + | 57139:71664-71683 | MS.gene046455:CDS | 35.0% | |
| CTTCTGCTCCCTTATATTAT+TGG | - | 57139:71504-71523 | None:intergenic | 35.0% | |
| GTAAAAGCTACTAGTGTTTC+TGG | + | 57139:73039-73058 | MS.gene046455:CDS | 35.0% | |
| TAAACATCTGACTGGAGTTT+CGG | + | 57139:71100-71119 | MS.gene046455:CDS | 35.0% | |
| TACCATCAACAACGCATATT+GGG | - | 57139:73178-73197 | None:intergenic | 35.0% | |
| TATGCCTCCTAATGTTTAGT+TGG | + | 57139:73491-73510 | MS.gene046455:intron | 35.0% | |
| TCCTGATATTTCCAAGTCAT+TGG | + | 57139:71190-71209 | MS.gene046455:CDS | 35.0% | |
| TCGGCTATACTTTCTTAACA+TGG | - | 57139:71606-71625 | None:intergenic | 35.0% | |
| TGCAGTCGAATAAGATTTCA+CGG | + | 57139:73268-73287 | MS.gene046455:intron | 35.0% | |
| TTCCTATGTCGTGTCATAAT+GGG | + | 57139:72250-72269 | MS.gene046455:CDS | 35.0% | |
| TTTATCTTCCATGAGAAACG+TGG | + | 57139:73122-73141 | MS.gene046455:CDS | 35.0% | |
| TTTCCATCAACATCACAAGA+AGG | - | 57139:72214-72233 | None:intergenic | 35.0% | |
| ! | ACCAATGACTTGGAAATATC+AGG | - | 57139:71194-71213 | None:intergenic | 35.0% |
| ! | GCTTGTTAAACAAATGAGGT+TGG | + | 57139:71136-71155 | MS.gene046455:CDS | 35.0% |
| ! | TCTTGTGATGTTGATGGAAA+TGG | + | 57139:72214-72233 | MS.gene046455:CDS | 35.0% |
| ! | TTGTGATATCAACCTGCTTT+TGG | - | 57139:71895-71914 | None:intergenic | 35.0% |
| !! | AAGCAGGTTGATATCACAAA+AGG | + | 57139:71896-71915 | MS.gene046455:CDS | 35.0% |
| AACTTCACCCAATGACTTTG+AGG | - | 57139:71042-71061 | None:intergenic | 40.0% | |
| AAGCTAATGTTCGCTATGCT+TGG | + | 57139:71930-71949 | MS.gene046455:CDS | 40.0% | |
| AATCAAGAAGGCAGTTGTAG+AGG | + | 57139:71331-71350 | MS.gene046455:CDS | 40.0% | |
| ACCAAGTCAACAACATCCTT+CGG | - | 57139:71296-71315 | None:intergenic | 40.0% | |
| ACTTCACCCAATGACTTTGA+GGG | - | 57139:71041-71060 | None:intergenic | 40.0% | |
| AGAGAAACCCTCAAAGTCAT+TGG | + | 57139:71031-71050 | MS.gene046455:CDS | 40.0% | |
| CAGGAAAGTCAATGCAAACA+CGG | + | 57139:71858-71877 | MS.gene046455:CDS | 40.0% | |
| CTTACAGGAATGAGTTCCTT+GGG | + | 57139:71797-71816 | MS.gene046455:CDS | 40.0% | |
| GAAGCCAACTAAACATTAGG+AGG | - | 57139:73498-73517 | None:intergenic | 40.0% | |
| GAGAAACCCTCAAAGTCATT+GGG | + | 57139:71032-71051 | MS.gene046455:CDS | 40.0% | |
| GATATCACAAAAGGAGTTCG+AGG | + | 57139:71905-71924 | MS.gene046455:CDS | 40.0% | |
| GATGCAGTTATTCCAAAAGC+AGG | + | 57139:71880-71899 | MS.gene046455:CDS | 40.0% | |
| GCAGAGAAGATGTTTCTTAC+AGG | + | 57139:71782-71801 | MS.gene046455:CDS | 40.0% | |
| GTTAAACAAATGAGGTTGGC+TGG | + | 57139:71140-71159 | MS.gene046455:CDS | 40.0% | |
| GTTCCTATGTCGTGTCATAA+TGG | + | 57139:72249-72268 | MS.gene046455:CDS | 40.0% | |
| GTTGTAGAGGTAGAGTTAGA+TGG | + | 57139:71344-71363 | MS.gene046455:CDS | 40.0% | |
| TATCACAAAAGGAGTTCGAG+GGG | + | 57139:71907-71926 | MS.gene046455:CDS | 40.0% | |
| TCACCTTCTTGTGATGTTGA+TGG | + | 57139:72208-72227 | MS.gene046455:CDS | 40.0% | |
| TCCACACCACATAACACTTT+GGG | - | 57139:72360-72379 | None:intergenic | 40.0% | |
| TCCTATGTCGTGTCATAATG+GGG | + | 57139:72251-72270 | MS.gene046455:CDS | 40.0% | |
| TCGAAGTTGAGATCGATTGT+TGG | + | 57139:73303-73322 | MS.gene046455:CDS | 40.0% | |
| TCTCCGTCCAAATGCATATA+TGG | + | 57139:72016-72035 | MS.gene046455:CDS | 40.0% | |
| TCTTACAGGAATGAGTTCCT+TGG | + | 57139:71796-71815 | MS.gene046455:CDS | 40.0% | |
| TTCCACACCACATAACACTT+TGG | - | 57139:72361-72380 | None:intergenic | 40.0% | |
| TTGTTGCATCATCAGACTCT+CGG | - | 57139:71625-71644 | None:intergenic | 40.0% | |
| ! | ACACTAGTAGCTTTTACCTG+AGG | - | 57139:73036-73055 | None:intergenic | 40.0% |
| ! | TCAATGCCCAAAGTGTTATG+TGG | + | 57139:72351-72370 | MS.gene046455:CDS | 40.0% |
| !! | CCGTTTTGTTAGTCATAGCA+TGG | - | 57139:71667-71686 | None:intergenic | 40.0% |
| !! | TTGCGAATATGATAATGGGG+TGG | + | 57139:72321-72340 | MS.gene046455:CDS | 40.0% |
| !! | TTGGCTTGCTTGTTCTAAAG+AGG | + | 57139:71949-71968 | MS.gene046455:CDS | 40.0% |
| !!! | AAGTCCCCTTTGGTTTTTGA+AGG | + | 57139:72427-72446 | MS.gene046455:CDS | 40.0% |
| AACATAGAGCTTCTTCGTCC+TGG | + | 57139:72274-72293 | MS.gene046455:CDS | 45.0% | |
| AACTAACCAGACAGAAGGGT+GGG | - | 57139:72068-72087 | None:intergenic | 45.0% | |
| CTTATTCGACTGCACAAGCA+CGG | - | 57139:73262-73281 | None:intergenic | 45.0% | |
| GAAGAACTCCAAGTTCTGCT+CGG | + | 57139:73070-73089 | MS.gene046455:CDS | 45.0% | |
| GTTGAGATTTATCGCAGCTC+AGG | + | 57139:71839-71858 | MS.gene046455:CDS | 45.0% | |
| GTTTGCAACAACCCATTGCA+TGG | + | 57139:71420-71439 | MS.gene046455:CDS | 45.0% | |
| TAACTAACCAGACAGAAGGG+TGG | - | 57139:72069-72088 | None:intergenic | 45.0% | |
| TCCCCATTATGACACGACAT+AGG | - | 57139:72255-72274 | None:intergenic | 45.0% | |
| TCCTCGTCAATCCATGCAAT+GGG | - | 57139:71434-71453 | None:intergenic | 45.0% | |
| TTCCTCGTCAATCCATGCAA+TGG | - | 57139:71435-71454 | None:intergenic | 45.0% | |
| TTGGCTTCTTGCAGAGAATG+AGG | + | 57139:73510-73529 | MS.gene046455:intron | 45.0% | |
| ! | ATTGCATGGATTGACGAGGA+AGG | + | 57139:71434-71453 | MS.gene046455:CDS | 45.0% |
| ! | TCCGAAGGATGTTGTTGACT+TGG | + | 57139:71292-71311 | MS.gene046455:CDS | 45.0% |
| ! | TGTTAGCTTCAAGTCCCCTT+TGG | + | 57139:72417-72436 | MS.gene046455:CDS | 45.0% |
| !! | AGGGTATCGGCATTCTACAA+TGG | + | 57139:72734-72753 | MS.gene046455:CDS | 45.0% |
| !! | ATCAGACTTGCTAATGCCCA+AGG | - | 57139:71816-71835 | None:intergenic | 45.0% |
| !! | TGAATGGGTTGACTATCCGA+AGG | + | 57139:71277-71296 | MS.gene046455:CDS | 45.0% |
| !! | TTTGGTTTGTGGTATGCCTC+AGG | + | 57139:73017-73036 | MS.gene046455:intron | 45.0% |
| AAAGGTAGCCGAGCAGAACT+TGG | - | 57139:73081-73100 | None:intergenic | 50.0% | |
| CGCCCAATATGCGTTGTTGA+TGG | + | 57139:73173-73192 | MS.gene046455:CDS | 50.0% | |
| GGAAGGAACCACGTTTCTCA+TGG | - | 57139:73133-73152 | None:intergenic | 50.0% | |
| GGACGAAGTTGTTTACTGCC+AGG | - | 57139:72295-72314 | None:intergenic | 50.0% | |
| ! | ACCCATTGCATGGATTGACG+AGG | + | 57139:71430-71449 | MS.gene046455:CDS | 50.0% |
| ! | GCCCAAAGTGTTATGTGGTG+TGG | + | 57139:72356-72375 | MS.gene046455:CDS | 50.0% |
| CTGTTACCCACCCTTCTGTC+TGG | + | 57139:72059-72078 | MS.gene046455:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 57139 | gene | 71026 | 73538 | 71026 | ID=MS.gene046455 |
| 57139 | mRNA | 71026 | 73538 | 71026 | ID=MS.gene046455.t1;Parent=MS.gene046455 |
| 57139 | exon | 71026 | 72080 | 71026 | ID=MS.gene046455.t1.exon1;Parent=MS.gene046455.t1 |
| 57139 | CDS | 71026 | 72080 | 71026 | ID=cds.MS.gene046455.t1;Parent=MS.gene046455.t1 |
| 57139 | exon | 72207 | 72448 | 72207 | ID=MS.gene046455.t1.exon2;Parent=MS.gene046455.t1 |
| 57139 | CDS | 72207 | 72448 | 72207 | ID=cds.MS.gene046455.t1;Parent=MS.gene046455.t1 |
| 57139 | exon | 72703 | 72761 | 72703 | ID=MS.gene046455.t1.exon3;Parent=MS.gene046455.t1 |
| 57139 | CDS | 72703 | 72761 | 72703 | ID=cds.MS.gene046455.t1;Parent=MS.gene046455.t1 |
| 57139 | exon | 73039 | 73194 | 73039 | ID=MS.gene046455.t1.exon4;Parent=MS.gene046455.t1 |
| 57139 | CDS | 73039 | 73194 | 73039 | ID=cds.MS.gene046455.t1;Parent=MS.gene046455.t1 |
| 57139 | exon | 73273 | 73368 | 73273 | ID=MS.gene046455.t1.exon5;Parent=MS.gene046455.t1 |
| 57139 | CDS | 73273 | 73368 | 73273 | ID=cds.MS.gene046455.t1;Parent=MS.gene046455.t1 |
| 57139 | exon | 73524 | 73538 | 73524 | ID=MS.gene046455.t1.exon6;Parent=MS.gene046455.t1 |
| 57139 | CDS | 73524 | 73538 | 73524 | ID=cds.MS.gene046455.t1;Parent=MS.gene046455.t1 |
| Gene Sequence |
| Protein sequence |
