Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046444.t1 | XP_003621296.1 | 80.3 | 537 | 102 | 1 | 1 | 537 | 1 | 533 | 4.00E-249 | 870.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046444.t1 | Q8RY59 | 36.3 | 554 | 314 | 11 | 11 | 530 | 15 | 563 | 2.6e-84 | 314.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046444.t1 | A2Q3R6 | 80.3 | 537 | 102 | 1 | 1 | 537 | 1 | 533 | 2.9e-249 | 870.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene007901 | MS.gene046444 | PPI |
| MS.gene046444 | MS.gene76207 | PPI |
| MS.gene046444 | MS.gene070678 | PPI |
| MS.gene36039 | MS.gene046444 | PPI |
| MS.gene046444 | MS.gene36039 | PPI |
| MS.gene046444 | MS.gene79552 | PPI |
| MS.gene046444 | MS.gene057563 | PPI |
| MS.gene046444 | MS.gene027783 | PPI |
| MS.gene046444 | MS.gene007901 | PPI |
| MS.gene79552 | MS.gene046444 | PPI |
| MS.gene046444 | MS.gene34237 | PPI |
| MS.gene046444 | MS.gene74956 | PPI |
| MS.gene046444 | MS.gene069103 | PPI |
| MS.gene046444 | MS.gene029308 | PPI |
| MS.gene046444 | MS.gene046409 | PPI |
| MS.gene046444 | MS.gene032270 | PPI |
| MS.gene046444 | MS.gene070621 | PPI |
| MS.gene34237 | MS.gene046444 | PPI |
| MS.gene046444 | MS.gene065039 | PPI |
| MS.gene046444 | MS.gene001066 | PPI |
| MS.gene046444 | MS.gene021778 | PPI |
| MS.gene046444 | MS.gene046455 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046444.t1 | MTR_7g011550 | 80.261 | 537 | 102 | 1 | 1 | 537 | 1 | 533 | 0.0 | 895 |
| MS.gene046444.t1 | MTR_1g112330 | 44.755 | 572 | 277 | 7 | 1 | 538 | 1 | 567 | 2.67e-157 | 461 |
| MS.gene046444.t1 | MTR_1g112330 | 44.737 | 570 | 277 | 8 | 1 | 538 | 1 | 564 | 2.97e-156 | 458 |
| MS.gene046444.t1 | MTR_5g032190 | 43.761 | 569 | 277 | 10 | 1 | 536 | 1 | 559 | 7.70e-151 | 444 |
| MS.gene046444.t1 | MTR_1g112330 | 49.783 | 460 | 199 | 6 | 1 | 433 | 1 | 455 | 3.91e-144 | 423 |
| MS.gene046444.t1 | MTR_5g032190 | 47.903 | 453 | 211 | 6 | 1 | 433 | 1 | 448 | 1.91e-138 | 409 |
| MS.gene046444.t1 | MTR_5g032190 | 47.903 | 453 | 211 | 6 | 1 | 433 | 1 | 448 | 6.04e-138 | 408 |
| MS.gene046444.t1 | MTR_5g029580 | 55.287 | 331 | 141 | 3 | 210 | 537 | 23 | 349 | 1.93e-122 | 364 |
| MS.gene046444.t1 | MTR_7g011880 | 59.211 | 152 | 37 | 3 | 358 | 509 | 60 | 186 | 6.66e-49 | 167 |
| MS.gene046444.t1 | MTR_2g090130 | 49.333 | 150 | 41 | 2 | 254 | 403 | 103 | 217 | 8.19e-38 | 139 |
| MS.gene046444.t1 | MTR_2g090130 | 46.203 | 158 | 36 | 3 | 1 | 156 | 1 | 111 | 4.04e-31 | 120 |
| MS.gene046444.t1 | MTR_7g011640 | 57.252 | 131 | 37 | 3 | 90 | 219 | 15 | 127 | 1.90e-37 | 135 |
| MS.gene046444.t1 | MTR_3g077870 | 31.295 | 278 | 149 | 8 | 257 | 530 | 67 | 306 | 1.07e-34 | 133 |
| MS.gene046444.t1 | MTR_4g105740 | 30.435 | 299 | 166 | 10 | 246 | 538 | 43 | 305 | 1.32e-33 | 130 |
| MS.gene046444.t1 | MTR_4g105740 | 30.303 | 297 | 165 | 10 | 246 | 536 | 43 | 303 | 1.13e-32 | 127 |
| MS.gene046444.t1 | MTR_8g088250 | 28.477 | 302 | 171 | 9 | 244 | 532 | 12 | 281 | 1.36e-28 | 115 |
| MS.gene046444.t1 | MTR_7g061850 | 44.882 | 127 | 61 | 1 | 184 | 310 | 6 | 123 | 6.90e-28 | 108 |
| MS.gene046444.t1 | MTR_7g061730 | 67.308 | 52 | 17 | 0 | 487 | 538 | 1 | 52 | 9.75e-16 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046444.t1 | AT1G32230 | 36.814 | 565 | 301 | 12 | 11 | 533 | 15 | 565 | 4.29e-105 | 327 |
| MS.gene046444.t1 | AT1G32230 | 36.814 | 565 | 301 | 12 | 11 | 533 | 15 | 565 | 8.55e-105 | 327 |
| MS.gene046444.t1 | AT1G32230 | 36.814 | 565 | 301 | 12 | 11 | 533 | 15 | 565 | 8.55e-105 | 327 |
| MS.gene046444.t1 | AT1G32230 | 36.814 | 565 | 301 | 12 | 11 | 533 | 15 | 565 | 8.55e-105 | 327 |
| MS.gene046444.t1 | AT1G32230 | 36.814 | 565 | 301 | 12 | 11 | 533 | 15 | 565 | 8.55e-105 | 327 |
| MS.gene046444.t1 | AT1G32230 | 36.572 | 566 | 302 | 12 | 11 | 533 | 15 | 566 | 9.57e-105 | 326 |
| MS.gene046444.t1 | AT2G35510 | 36.620 | 497 | 275 | 10 | 58 | 526 | 71 | 555 | 2.33e-95 | 301 |
| MS.gene046444.t1 | AT2G35510 | 36.620 | 497 | 275 | 10 | 58 | 526 | 71 | 555 | 2.33e-95 | 301 |
| MS.gene046444.t1 | AT2G35510 | 40.420 | 381 | 207 | 7 | 58 | 426 | 71 | 443 | 5.72e-90 | 284 |
| MS.gene046444.t1 | AT1G23550 | 33.333 | 285 | 144 | 9 | 261 | 532 | 63 | 314 | 2.22e-36 | 138 |
| MS.gene046444.t1 | AT5G62520 | 28.276 | 290 | 168 | 5 | 243 | 526 | 41 | 296 | 1.97e-34 | 132 |
| MS.gene046444.t1 | AT1G70440 | 30.686 | 277 | 151 | 5 | 257 | 526 | 54 | 296 | 5.24e-33 | 128 |
| MS.gene046444.t1 | AT1G70440 | 30.686 | 277 | 151 | 5 | 257 | 526 | 54 | 296 | 5.24e-33 | 128 |
| MS.gene046444.t1 | AT5G62520 | 34.197 | 193 | 119 | 3 | 243 | 429 | 41 | 231 | 5.29e-29 | 115 |
| MS.gene046444.t1 | AT3G47720 | 29.289 | 239 | 125 | 6 | 298 | 536 | 117 | 311 | 1.82e-22 | 98.6 |
Find 0 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTTATTTTGAAC+AGG | + | 57140:28777-28796 | MS.gene046444:intron | 10.0% |
| !! | ACACTAAATAAATTATTGTT+AGG | - | 57140:28954-28973 | None:intergenic | 15.0% |
| !! | ATATATCCAATGAAATAAAT+GGG | + | 57140:27666-27685 | MS.gene046444:CDS | 15.0% |
| !! | GAAGATAAAAAATATTAGAA+TGG | - | 57140:28985-29004 | None:intergenic | 15.0% |
| !! | TAAAAACGGTTAAAAAAAAT+TGG | - | 57140:28928-28947 | None:intergenic | 15.0% |
| !! | TGAATCTTTATATGAAAAAT+TGG | + | 57140:27844-27863 | MS.gene046444:CDS | 15.0% |
| !!! | GTTATCATAGATTATTTTAT+TGG | + | 57140:28245-28264 | MS.gene046444:intron | 15.0% |
| !!! | TATTTTAACTATAAGAAAAG+TGG | + | 57140:27317-27336 | MS.gene046444:CDS | 15.0% |
| !!! | TGTTTCTAGAAATATTTATT+TGG | + | 57140:29474-29493 | MS.gene046444:intron | 15.0% |
| !!! | TTATTGTTAGGTTTTAAAAA+CGG | - | 57140:28942-28961 | None:intergenic | 15.0% |
| !!! | TTCTAATATTTTTTATCTTC+TGG | + | 57140:28985-29004 | MS.gene046444:intron | 15.0% |
| !! | AAAAGATTTCAAAATCAAGA+AGG | + | 57140:27415-27434 | MS.gene046444:CDS | 20.0% |
| !! | CATATATCCAATGAAATAAA+TGG | + | 57140:27665-27684 | MS.gene046444:CDS | 20.0% |
| !! | TAAATGAGAGTAAGAAAAAA+GGG | + | 57140:28811-28830 | MS.gene046444:CDS | 20.0% |
| !! | TAATCATTTAAATCTATGTC+TGG | - | 57140:27821-27840 | None:intergenic | 20.0% |
| !! | TAGAACCAACAAAAAATTTA+GGG | - | 57140:27568-27587 | None:intergenic | 20.0% |
| !! | TATATCCAATGAAATAAATG+GGG | + | 57140:27667-27686 | MS.gene046444:CDS | 20.0% |
| !! | TTAAATGAGAGTAAGAAAAA+AGG | + | 57140:28810-28829 | MS.gene046444:CDS | 20.0% |
| !! | TTTATATGAAAAATTGGATG+TGG | + | 57140:27850-27869 | MS.gene046444:CDS | 20.0% |
| !!! | TATTTTATTGGATTTCTCAA+AGG | + | 57140:28257-28276 | MS.gene046444:intron | 20.0% |
| !!! | TTTTTCCCTAAATTTTTTGT+TGG | + | 57140:27560-27579 | MS.gene046444:CDS | 20.0% |
| ! | AAAATCATGGAAAAAGGAAT+GGG | - | 57140:29201-29220 | None:intergenic | 25.0% |
| ! | AACCAAAATTGTTTGGATAA+AGG | - | 57140:29100-29119 | None:intergenic | 25.0% |
| ! | ATAAGAAACATAATATGGGA+AGG | - | 57140:29246-29265 | None:intergenic | 25.0% |
| ! | ATAATAATTGACCAATGACT+TGG | - | 57140:27300-27319 | None:intergenic | 25.0% |
| ! | GAAGATAAAATCATGGAAAA+AGG | - | 57140:29207-29226 | None:intergenic | 25.0% |
| ! | GCAATAAAGGAAAACAATAT+AGG | - | 57140:29078-29097 | None:intergenic | 25.0% |
| ! | GTAGAACCAACAAAAAATTT+AGG | - | 57140:27569-27588 | None:intergenic | 25.0% |
| ! | GTCGATAAGAAACATAATAT+GGG | - | 57140:29250-29269 | None:intergenic | 25.0% |
| ! | TAAAATCATGGAAAAAGGAA+TGG | - | 57140:29202-29221 | None:intergenic | 25.0% |
| ! | TGAAGAACCCAATAATATAA+GGG | + | 57140:27589-27608 | MS.gene046444:CDS | 25.0% |
| ! | TTAAGTGCTTTACTCTATTT+CGG | + | 57140:28668-28687 | MS.gene046444:intron | 25.0% |
| !! | ACATTCATGTGCAATATTTT+GGG | + | 57140:29015-29034 | MS.gene046444:intron | 25.0% |
| !! | TACATTCATGTGCAATATTT+TGG | + | 57140:29014-29033 | MS.gene046444:intron | 25.0% |
| !! | TTATAGAACATCAAACGTTT+TGG | - | 57140:27347-27366 | None:intergenic | 25.0% |
| !!! | AGGACACAATTTTTTTCTAA+AGG | - | 57140:28561-28580 | None:intergenic | 25.0% |
| !!! | ATCTTTTGAGATTTATCTTC+TGG | + | 57140:29044-29063 | MS.gene046444:intron | 25.0% |
| AAAAATCTAGCACAACTTCT+TGG | - | 57140:27466-27485 | None:intergenic | 30.0% | |
| AAACCATATATGCATTTGGA+CGG | - | 57140:28118-28137 | None:intergenic | 30.0% | |
| AATAATATAAGGGAGCAGAA+GGG | + | 57140:27599-27618 | MS.gene046444:CDS | 30.0% | |
| AATATGCAATGTTGTATCCA+AGG | + | 57140:29443-29462 | MS.gene046444:CDS | 30.0% | |
| ACAAAGAATGTGAAAGTTGT+TGG | + | 57140:27737-27756 | MS.gene046444:CDS | 30.0% | |
| ACATTACCTTCAAAAACCAA+AGG | - | 57140:28532-28551 | None:intergenic | 30.0% | |
| ACCAAAACCATATATGCATT+TGG | - | 57140:28122-28141 | None:intergenic | 30.0% | |
| ACTAAATCAAAAGCGAAAGA+GGG | + | 57140:27160-27179 | MS.gene046444:CDS | 30.0% | |
| AGTAGTTGCGAATATGATAA+TGG | + | 57140:28412-28431 | MS.gene046444:CDS | 30.0% | |
| AGTCAGATGTTTAACACATT+GGG | - | 57140:27189-27208 | None:intergenic | 30.0% | |
| ATTACCTTCAAAAACCAAAG+GGG | - | 57140:28530-28549 | None:intergenic | 30.0% | |
| ATTATAACTAACCAGACAGA+AGG | - | 57140:28169-28188 | None:intergenic | 30.0% | |
| CATATATCTAACATTGACAC+AGG | - | 57140:28581-28600 | None:intergenic | 30.0% | |
| CATTACCTTCAAAAACCAAA+GGG | - | 57140:28531-28550 | None:intergenic | 30.0% | |
| CGTCGATAAGAAACATAATA+TGG | - | 57140:29251-29270 | None:intergenic | 30.0% | |
| CGTTTGATGTTCTATAAGAA+TGG | + | 57140:27350-27369 | MS.gene046444:CDS | 30.0% | |
| CTAGAAACAAAATTGTACCT+TGG | - | 57140:29463-29482 | None:intergenic | 30.0% | |
| CTGAAGAACCCAATAATATA+AGG | + | 57140:27588-27607 | MS.gene046444:CDS | 30.0% | |
| CTTGAAGCTAACAATGAATT+CGG | - | 57140:28506-28525 | None:intergenic | 30.0% | |
| GTAGTTGCGAATATGATAAT+GGG | + | 57140:28413-28432 | MS.gene046444:CDS | 30.0% | |
| GTTCTATAAGAATGGTGAAT+GGG | + | 57140:27358-27377 | MS.gene046444:CDS | 30.0% | |
| TAATTATCACTGAAGTGTGA+AGG | + | 57140:28639-28658 | MS.gene046444:intron | 30.0% | |
| TACCACAAACCAAAATTGTT+TGG | - | 57140:29107-29126 | None:intergenic | 30.0% | |
| TCATGTGGTTCTTTCTTATT+AGG | - | 57140:27635-27654 | None:intergenic | 30.0% | |
| TCTCATGGAAGATAAAATCA+TGG | - | 57140:29214-29233 | None:intergenic | 30.0% | |
| TGTTCTATAAGAATGGTGAA+TGG | + | 57140:27357-27376 | MS.gene046444:CDS | 30.0% | |
| TGTTTAACAAGCACATTTGT+TGG | - | 57140:27224-27243 | None:intergenic | 30.0% | |
| TGTTTGGATAAAGGCAATAA+AGG | - | 57140:29091-29110 | None:intergenic | 30.0% | |
| TTATAACTAACCAGACAGAA+GGG | - | 57140:28168-28187 | None:intergenic | 30.0% | |
| TTATCATATTCGCAACTACT+TGG | - | 57140:28412-28431 | None:intergenic | 30.0% | |
| TTCTGCTCCCTTATATTATT+GGG | - | 57140:27599-27618 | None:intergenic | 30.0% | |
| TTGAAGCTAACAATGAATTC+GGG | - | 57140:28505-28524 | None:intergenic | 30.0% | |
| ! | AGAGTAAGAAAAAAGGGTAT+CGG | + | 57140:28817-28836 | MS.gene046444:CDS | 30.0% |
| ! | ATGTGCTTGTTAAACAAATG+AGG | + | 57140:27228-27247 | MS.gene046444:CDS | 30.0% |
| ! | CATTCATGTGCAATATTTTG+GGG | + | 57140:29016-29035 | MS.gene046444:intron | 30.0% |
| ! | TAGTTGCGAATATGATAATG+GGG | + | 57140:28414-28433 | MS.gene046444:CDS | 30.0% |
| ! | TCCAAATGCATATATGGTTT+TGG | + | 57140:28118-28137 | MS.gene046444:CDS | 30.0% |
| ! | TGCCTTTATCCAAACAATTT+TGG | + | 57140:29095-29114 | MS.gene046444:intron | 30.0% |
| ! | TTCATGAGTTTTGCTTCTTA+TGG | + | 57140:28867-28886 | MS.gene046444:intron | 30.0% |
| ! | TTGTCAACAATGATGGAATA+TGG | + | 57140:28070-28089 | MS.gene046444:CDS | 30.0% |
| !!! | ATATGTAGTTTTGTCTCATG+TGG | - | 57140:27650-27669 | None:intergenic | 30.0% |
| !!! | ATCCAAACAATTTTGGTTTG+TGG | + | 57140:29102-29121 | MS.gene046444:intron | 30.0% |
| AAGAAGGTGAACTGTTAACA+TGG | - | 57140:28294-28313 | None:intergenic | 35.0% | |
| AGAAGGTGAACTGTTAACAT+GGG | - | 57140:28293-28312 | None:intergenic | 35.0% | |
| AGAGGAATTGTCAACAATGA+TGG | + | 57140:28063-28082 | MS.gene046444:CDS | 35.0% | |
| ATACCATCAACAACGCATAT+TGG | - | 57140:29275-29294 | None:intergenic | 35.0% | |
| ATATCACAAAAGGAGTTCGA+GGG | + | 57140:28002-28021 | MS.gene046444:CDS | 35.0% | |
| ATCCAATGAAATAAATGGGG+TGG | + | 57140:27670-27689 | MS.gene046444:CDS | 35.0% | |
| ATCCACCCCATTTATTTCAT+TGG | - | 57140:27675-27694 | None:intergenic | 35.0% | |
| ATGCTATGACTAACAAAACG+GGG | + | 57140:27762-27781 | MS.gene046444:CDS | 35.0% | |
| ATGGAAAAAGGAATGGGAAA+AGG | - | 57140:29195-29214 | None:intergenic | 35.0% | |
| CAAGAAGCCAACTAAACATT+AGG | - | 57140:29597-29616 | None:intergenic | 35.0% | |
| CAATAATATAAGGGAGCAGA+AGG | + | 57140:27598-27617 | MS.gene046444:CDS | 35.0% | |
| CAATGTGTTAAACATCTGAC+TGG | + | 57140:27188-27207 | MS.gene046444:CDS | 35.0% | |
| CACTAAATCAAAAGCGAAAG+AGG | + | 57140:27159-27178 | MS.gene046444:CDS | 35.0% | |
| CAGTCAGATGTTTAACACAT+TGG | - | 57140:27190-27209 | None:intergenic | 35.0% | |
| CATGCTATGACTAACAAAAC+GGG | + | 57140:27761-27780 | MS.gene046444:CDS | 35.0% | |
| CCATGCTATGACTAACAAAA+CGG | + | 57140:27760-27779 | MS.gene046444:CDS | 35.0% | |
| CTTCTGCTCCCTTATATTAT+TGG | - | 57140:27600-27619 | None:intergenic | 35.0% | |
| GTAAAAGCTACTAGTGTTTC+TGG | + | 57140:29135-29154 | MS.gene046444:CDS | 35.0% | |
| TAAACATCTGACTGGAGTTT+CGG | + | 57140:27196-27215 | MS.gene046444:CDS | 35.0% | |
| TACCATCAACAACGCATATT+GGG | - | 57140:29274-29293 | None:intergenic | 35.0% | |
| TATGCCTCCTAATGTTTAGT+TGG | + | 57140:29587-29606 | MS.gene046444:intron | 35.0% | |
| TCCTGATATTTCCAAGTCAT+TGG | + | 57140:27286-27305 | MS.gene046444:CDS | 35.0% | |
| TCGGCTATACTTTCTTAACA+TGG | - | 57140:27702-27721 | None:intergenic | 35.0% | |
| TGCAGTCGAATAAGATTTCA+CGG | + | 57140:29364-29383 | MS.gene046444:intron | 35.0% | |
| TTCCTATGTCGTGTCATAAT+GGG | + | 57140:28346-28365 | MS.gene046444:CDS | 35.0% | |
| TTTATCTTCCATGAGAAACG+TGG | + | 57140:29218-29237 | MS.gene046444:CDS | 35.0% | |
| TTTCCATCAACATCACAAGA+AGG | - | 57140:28310-28329 | None:intergenic | 35.0% | |
| ! | ACCAATGACTTGGAAATATC+AGG | - | 57140:27290-27309 | None:intergenic | 35.0% |
| ! | GCTTGTTAAACAAATGAGGT+TGG | + | 57140:27232-27251 | MS.gene046444:CDS | 35.0% |
| ! | TCTTGTGATGTTGATGGAAA+TGG | + | 57140:28310-28329 | MS.gene046444:CDS | 35.0% |
| ! | TTGTGATATCAACCTGCTTT+TGG | - | 57140:27991-28010 | None:intergenic | 35.0% |
| !! | AAGCAGGTTGATATCACAAA+AGG | + | 57140:27992-28011 | MS.gene046444:CDS | 35.0% |
| AACTTCACCCAATGACTTTG+AGG | - | 57140:27138-27157 | None:intergenic | 40.0% | |
| AAGCTAATGTTCGCTATGCT+TGG | + | 57140:28026-28045 | MS.gene046444:CDS | 40.0% | |
| AATCAAGAAGGCAGTTGTAG+AGG | + | 57140:27427-27446 | MS.gene046444:CDS | 40.0% | |
| ACCAAGTCAACAACATCCTT+CGG | - | 57140:27392-27411 | None:intergenic | 40.0% | |
| ACTTCACCCAATGACTTTGA+GGG | - | 57140:27137-27156 | None:intergenic | 40.0% | |
| AGAGAAACCCTCAAAGTCAT+TGG | + | 57140:27127-27146 | MS.gene046444:CDS | 40.0% | |
| CAGGAAAGTCAATGCAAACA+CGG | + | 57140:27954-27973 | MS.gene046444:CDS | 40.0% | |
| CTTACAGGAATGAGTTCCTT+GGG | + | 57140:27893-27912 | MS.gene046444:CDS | 40.0% | |
| GAAGCCAACTAAACATTAGG+AGG | - | 57140:29594-29613 | None:intergenic | 40.0% | |
| GAGAAACCCTCAAAGTCATT+GGG | + | 57140:27128-27147 | MS.gene046444:CDS | 40.0% | |
| GATATCACAAAAGGAGTTCG+AGG | + | 57140:28001-28020 | MS.gene046444:CDS | 40.0% | |
| GATGCAGTTATTCCAAAAGC+AGG | + | 57140:27976-27995 | MS.gene046444:CDS | 40.0% | |
| GCAGAGAAGATGTTTCTTAC+AGG | + | 57140:27878-27897 | MS.gene046444:CDS | 40.0% | |
| GTTAAACAAATGAGGTTGGC+TGG | + | 57140:27236-27255 | MS.gene046444:CDS | 40.0% | |
| GTTCCTATGTCGTGTCATAA+TGG | + | 57140:28345-28364 | MS.gene046444:CDS | 40.0% | |
| GTTGTAGAGGTAGAGTTAGA+TGG | + | 57140:27440-27459 | MS.gene046444:CDS | 40.0% | |
| TATCACAAAAGGAGTTCGAG+GGG | + | 57140:28003-28022 | MS.gene046444:CDS | 40.0% | |
| TCACCTTCTTGTGATGTTGA+TGG | + | 57140:28304-28323 | MS.gene046444:CDS | 40.0% | |
| TCCACACCACATAACACTTT+GGG | - | 57140:28456-28475 | None:intergenic | 40.0% | |
| TCCTATGTCGTGTCATAATG+GGG | + | 57140:28347-28366 | MS.gene046444:CDS | 40.0% | |
| TCGAAGTTGAGATCGATTGT+TGG | + | 57140:29399-29418 | MS.gene046444:CDS | 40.0% | |
| TCTCCGTCCAAATGCATATA+TGG | + | 57140:28112-28131 | MS.gene046444:CDS | 40.0% | |
| TCTTACAGGAATGAGTTCCT+TGG | + | 57140:27892-27911 | MS.gene046444:CDS | 40.0% | |
| TTCCACACCACATAACACTT+TGG | - | 57140:28457-28476 | None:intergenic | 40.0% | |
| TTGTTGCATCATCAGACTCT+CGG | - | 57140:27721-27740 | None:intergenic | 40.0% | |
| ! | ACACTAGTAGCTTTTACCTG+AGG | - | 57140:29132-29151 | None:intergenic | 40.0% |
| ! | TCAATGCCCAAAGTGTTATG+TGG | + | 57140:28447-28466 | MS.gene046444:CDS | 40.0% |
| !! | CCGTTTTGTTAGTCATAGCA+TGG | - | 57140:27763-27782 | None:intergenic | 40.0% |
| !! | TTGCGAATATGATAATGGGG+TGG | + | 57140:28417-28436 | MS.gene046444:CDS | 40.0% |
| !! | TTGGCTTGCTTGTTCTAAAG+AGG | + | 57140:28045-28064 | MS.gene046444:CDS | 40.0% |
| !!! | AAGTCCCCTTTGGTTTTTGA+AGG | + | 57140:28523-28542 | MS.gene046444:CDS | 40.0% |
| AACATAGAGCTTCTTCGTCC+TGG | + | 57140:28370-28389 | MS.gene046444:CDS | 45.0% | |
| AACTAACCAGACAGAAGGGT+GGG | - | 57140:28164-28183 | None:intergenic | 45.0% | |
| CTTATTCGACTGCACAAGCA+CGG | - | 57140:29358-29377 | None:intergenic | 45.0% | |
| GAAGAACTCCAAGTTCTGCT+CGG | + | 57140:29166-29185 | MS.gene046444:CDS | 45.0% | |
| GTTGAGATTTATCGCAGCTC+AGG | + | 57140:27935-27954 | MS.gene046444:CDS | 45.0% | |
| GTTTGCAACAACCCATTGCA+TGG | + | 57140:27516-27535 | MS.gene046444:CDS | 45.0% | |
| TAACTAACCAGACAGAAGGG+TGG | - | 57140:28165-28184 | None:intergenic | 45.0% | |
| TCCCCATTATGACACGACAT+AGG | - | 57140:28351-28370 | None:intergenic | 45.0% | |
| TCCTCGTCAATCCATGCAAT+GGG | - | 57140:27530-27549 | None:intergenic | 45.0% | |
| TTCCTCGTCAATCCATGCAA+TGG | - | 57140:27531-27550 | None:intergenic | 45.0% | |
| TTGGCTTCTTGCAGAGAATG+AGG | + | 57140:29606-29625 | MS.gene046444:intron | 45.0% | |
| ! | ATTGCATGGATTGACGAGGA+AGG | + | 57140:27530-27549 | MS.gene046444:CDS | 45.0% |
| ! | TCCGAAGGATGTTGTTGACT+TGG | + | 57140:27388-27407 | MS.gene046444:CDS | 45.0% |
| ! | TGTTAGCTTCAAGTCCCCTT+TGG | + | 57140:28513-28532 | MS.gene046444:CDS | 45.0% |
| !! | AGGGTATCGGCATTCTACAA+TGG | + | 57140:28830-28849 | MS.gene046444:CDS | 45.0% |
| !! | ATCAGACTTGCTAATGCCCA+AGG | - | 57140:27912-27931 | None:intergenic | 45.0% |
| !! | TGAATGGGTTGACTATCCGA+AGG | + | 57140:27373-27392 | MS.gene046444:CDS | 45.0% |
| !! | TTTGGTTTGTGGTATGCCTC+AGG | + | 57140:29113-29132 | MS.gene046444:intron | 45.0% |
| AAAGGTAGCCGAGCAGAACT+TGG | - | 57140:29177-29196 | None:intergenic | 50.0% | |
| CGCCCAATATGCGTTGTTGA+TGG | + | 57140:29269-29288 | MS.gene046444:CDS | 50.0% | |
| GGAAGGAACCACGTTTCTCA+TGG | - | 57140:29229-29248 | None:intergenic | 50.0% | |
| GGACGAAGTTGTTTACTGCC+AGG | - | 57140:28391-28410 | None:intergenic | 50.0% | |
| ! | ACCCATTGCATGGATTGACG+AGG | + | 57140:27526-27545 | MS.gene046444:CDS | 50.0% |
| ! | GCCCAAAGTGTTATGTGGTG+TGG | + | 57140:28452-28471 | MS.gene046444:CDS | 50.0% |
| CTGTTACCCACCCTTCTGTC+TGG | + | 57140:28155-28174 | MS.gene046444:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 57140 | gene | 27122 | 29634 | 27122 | ID=MS.gene046444 |
| 57140 | mRNA | 27122 | 29634 | 27122 | ID=MS.gene046444.t1;Parent=MS.gene046444 |
| 57140 | exon | 27122 | 28176 | 27122 | ID=MS.gene046444.t1.exon1;Parent=MS.gene046444.t1 |
| 57140 | CDS | 27122 | 28176 | 27122 | ID=cds.MS.gene046444.t1;Parent=MS.gene046444.t1 |
| 57140 | exon | 28303 | 28544 | 28303 | ID=MS.gene046444.t1.exon2;Parent=MS.gene046444.t1 |
| 57140 | CDS | 28303 | 28544 | 28303 | ID=cds.MS.gene046444.t1;Parent=MS.gene046444.t1 |
| 57140 | exon | 28799 | 28857 | 28799 | ID=MS.gene046444.t1.exon3;Parent=MS.gene046444.t1 |
| 57140 | CDS | 28799 | 28857 | 28799 | ID=cds.MS.gene046444.t1;Parent=MS.gene046444.t1 |
| 57140 | exon | 29135 | 29290 | 29135 | ID=MS.gene046444.t1.exon4;Parent=MS.gene046444.t1 |
| 57140 | CDS | 29135 | 29290 | 29135 | ID=cds.MS.gene046444.t1;Parent=MS.gene046444.t1 |
| 57140 | exon | 29369 | 29464 | 29369 | ID=MS.gene046444.t1.exon5;Parent=MS.gene046444.t1 |
| 57140 | CDS | 29369 | 29464 | 29369 | ID=cds.MS.gene046444.t1;Parent=MS.gene046444.t1 |
| 57140 | exon | 29620 | 29634 | 29620 | ID=MS.gene046444.t1.exon6;Parent=MS.gene046444.t1 |
| 57140 | CDS | 29620 | 29634 | 29620 | ID=cds.MS.gene046444.t1;Parent=MS.gene046444.t1 |
| Gene Sequence |
| Protein sequence |
