Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032270.t1 | XP_003621296.1 | 69.8 | 546 | 99 | 1 | 1 | 480 | 1 | 546 | 3.80E-211 | 744.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032270.t1 | Q8RY59 | 36.9 | 455 | 260 | 6 | 11 | 442 | 15 | 465 | 1.4e-73 | 278.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032270.t1 | A2Q3R6 | 69.8 | 546 | 99 | 1 | 1 | 480 | 1 | 546 | 2.7e-211 | 744.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene070621 | MS.gene032270 | PPI |
| MS.gene79552 | MS.gene032270 | PPI |
| MS.gene76207 | MS.gene032270 | PPI |
| MS.gene032270 | MS.gene046455 | PPI |
| MS.gene34237 | MS.gene032270 | PPI |
| MS.gene007901 | MS.gene032270 | PPI |
| MS.gene74956 | MS.gene032270 | PPI |
| MS.gene032270 | MS.gene027783 | PPI |
| MS.gene057563 | MS.gene032270 | PPI |
| MS.gene032270 | MS.gene069103 | PPI |
| MS.gene032270 | MS.gene046409 | PPI |
| MS.gene046444 | MS.gene032270 | PPI |
| MS.gene032270 | MS.gene065039 | PPI |
| MS.gene36039 | MS.gene032270 | PPI |
| MS.gene070678 | MS.gene032270 | PPI |
| MS.gene032270 | MS.gene001066 | PPI |
| MS.gene032270 | MS.gene021778 | PPI |
| MS.gene032270 | MS.gene029308 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032270.t1 | MTR_7g011550 | 68.315 | 546 | 107 | 3 | 1 | 480 | 1 | 546 | 0.0 | 743 |
| MS.gene032270.t1 | MTR_1g112330 | 48.387 | 465 | 204 | 6 | 1 | 436 | 1 | 458 | 7.80e-140 | 410 |
| MS.gene032270.t1 | MTR_1g112330 | 49.011 | 455 | 196 | 6 | 1 | 426 | 1 | 448 | 8.95e-139 | 411 |
| MS.gene032270.t1 | MTR_1g112330 | 48.701 | 462 | 201 | 6 | 1 | 433 | 1 | 455 | 1.10e-138 | 410 |
| MS.gene032270.t1 | MTR_5g032190 | 48.124 | 453 | 210 | 6 | 1 | 433 | 1 | 448 | 3.20e-136 | 401 |
| MS.gene032270.t1 | MTR_5g032190 | 48.124 | 453 | 210 | 6 | 1 | 433 | 1 | 448 | 4.23e-136 | 401 |
| MS.gene032270.t1 | MTR_5g032190 | 48.124 | 453 | 210 | 6 | 1 | 433 | 1 | 448 | 4.23e-135 | 402 |
| MS.gene032270.t1 | MTR_5g029580 | 60.558 | 251 | 93 | 1 | 194 | 438 | 1 | 251 | 8.96e-107 | 322 |
| MS.gene032270.t1 | MTR_7g011640 | 63.063 | 111 | 24 | 1 | 90 | 200 | 15 | 108 | 3.42e-37 | 134 |
| MS.gene032270.t1 | MTR_2g090130 | 48.000 | 150 | 43 | 1 | 254 | 403 | 103 | 217 | 3.67e-37 | 136 |
| MS.gene032270.t1 | MTR_2g090130 | 51.613 | 124 | 26 | 1 | 27 | 150 | 14 | 103 | 1.40e-30 | 118 |
| MS.gene032270.t1 | MTR_4g105740 | 35.676 | 185 | 106 | 5 | 246 | 426 | 43 | 218 | 5.73e-29 | 116 |
| MS.gene032270.t1 | MTR_4g105740 | 35.676 | 185 | 106 | 5 | 246 | 426 | 43 | 218 | 7.93e-29 | 116 |
| MS.gene032270.t1 | MTR_7g061850 | 44.882 | 127 | 61 | 1 | 184 | 310 | 6 | 123 | 7.60e-28 | 108 |
| MS.gene032270.t1 | MTR_3g077870 | 34.444 | 180 | 105 | 5 | 251 | 426 | 61 | 231 | 8.53e-27 | 110 |
| MS.gene032270.t1 | MTR_8g088250 | 32.778 | 180 | 110 | 4 | 254 | 425 | 27 | 203 | 5.74e-25 | 104 |
| MS.gene032270.t1 | MTR_7g011880 | 63.158 | 76 | 24 | 1 | 355 | 430 | 57 | 128 | 1.30e-22 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032270.t1 | AT1G32230 | 35.837 | 466 | 250 | 6 | 11 | 442 | 15 | 465 | 7.21e-89 | 283 |
| MS.gene032270.t1 | AT2G35510 | 39.541 | 392 | 195 | 8 | 58 | 426 | 71 | 443 | 1.01e-88 | 279 |
| MS.gene032270.t1 | AT1G32230 | 35.837 | 466 | 250 | 6 | 11 | 442 | 15 | 465 | 1.24e-88 | 283 |
| MS.gene032270.t1 | AT1G32230 | 35.837 | 466 | 250 | 6 | 11 | 442 | 15 | 465 | 1.37e-88 | 282 |
| MS.gene032270.t1 | AT1G32230 | 35.837 | 466 | 250 | 6 | 11 | 442 | 15 | 465 | 1.37e-88 | 282 |
| MS.gene032270.t1 | AT1G32230 | 35.837 | 466 | 250 | 6 | 11 | 442 | 15 | 465 | 1.37e-88 | 282 |
| MS.gene032270.t1 | AT1G32230 | 35.837 | 466 | 250 | 6 | 11 | 442 | 15 | 465 | 1.37e-88 | 282 |
| MS.gene032270.t1 | AT2G35510 | 39.541 | 392 | 195 | 8 | 58 | 426 | 71 | 443 | 7.36e-88 | 280 |
| MS.gene032270.t1 | AT2G35510 | 39.541 | 392 | 195 | 8 | 58 | 426 | 71 | 443 | 7.36e-88 | 280 |
| MS.gene032270.t1 | AT1G23550 | 35.385 | 195 | 111 | 5 | 261 | 446 | 63 | 251 | 1.83e-32 | 126 |
| MS.gene032270.t1 | AT1G70440 | 35.359 | 181 | 109 | 3 | 257 | 430 | 54 | 233 | 2.53e-29 | 117 |
| MS.gene032270.t1 | AT1G70440 | 35.359 | 181 | 109 | 3 | 257 | 430 | 54 | 233 | 2.53e-29 | 117 |
| MS.gene032270.t1 | AT5G62520 | 32.000 | 200 | 128 | 3 | 244 | 437 | 42 | 239 | 1.44e-27 | 110 |
| MS.gene032270.t1 | AT5G62520 | 32.812 | 192 | 121 | 3 | 244 | 429 | 42 | 231 | 1.07e-26 | 110 |
| MS.gene032270.t1 | AT3G47720 | 30.244 | 205 | 97 | 5 | 298 | 466 | 117 | 311 | 3.49e-19 | 88.6 |
Find 106 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCTGCTCCCTTATATTAT+TGG | 0.156025 | 8.2:-46914185 | None:intergenic |
| CATATATCCAATGAAATAAA+TGG | 0.166586 | 8.2:+46914253 | MS.gene032270:CDS |
| TCATGTGATTCTTTCTTATT+AGG | 0.193411 | 8.2:-46914220 | None:intergenic |
| TCATGCTATGACTAACAAAA+TGG | 0.219540 | 8.2:+46914348 | MS.gene032270:CDS |
| GCACAGAAAATGTTTCTTAC+AGG | 0.228702 | 8.2:+46914466 | MS.gene032270:CDS |
| TCCTGCTCCCTTATATTATT+GGG | 0.230780 | 8.2:-46914184 | None:intergenic |
| AGAGGAATTGTCATCAATTA+TGG | 0.254170 | 8.2:+46914651 | MS.gene032270:CDS |
| TCTCCGTCCAAATGCTTATA+TGG | 0.254526 | 8.2:+46914700 | MS.gene032270:CDS |
| CTGAAGAACCCAATAATATA+AGG | 0.257902 | 8.2:+46914176 | MS.gene032270:CDS |
| TCCAAATGCTTATATGGTTT+TGG | 0.266568 | 8.2:+46914706 | MS.gene032270:CDS |
| TTGTCATCAATTATGGAATA+TGG | 0.266616 | 8.2:+46914658 | MS.gene032270:CDS |
| ATCCACCCCATTTATTTCAT+TGG | 0.284818 | 8.2:-46914260 | None:intergenic |
| GTTCCTATGTCGTGTCATAA+TGG | 0.327755 | 8.2:+46915020 | MS.gene032270:CDS |
| AGTAGTTGCGAATATGATAA+TGG | 0.339409 | 8.2:+46915087 | MS.gene032270:CDS |
| TTATAGAACATCAAACGTTT+TGG | 0.343644 | 8.2:-46913932 | None:intergenic |
| TTCCTATGTCGTGTCATAAT+GGG | 0.348589 | 8.2:+46915021 | MS.gene032270:CDS |
| TCCTGATATTTCCAAGTCAT+TGG | 0.362780 | 8.2:+46913874 | MS.gene032270:CDS |
| CTTGAAGCTAACAACGAATT+CGG | 0.371114 | 8.2:-46915178 | None:intergenic |
| TGTTTAACAACCACACTTGT+TGG | 0.379892 | 8.2:-46913809 | None:intergenic |
| GTAGTTGCGAATATGATAAT+GGG | 0.385391 | 8.2:+46915088 | MS.gene032270:CDS |
| ACCAATGACTTGGAAATATC+AGG | 0.386215 | 8.2:-46913875 | None:intergenic |
| ATATATCCAATGAAATAAAT+GGG | 0.386689 | 8.2:+46914254 | MS.gene032270:CDS |
| TCCACACCACATAACACTTT+GGG | 0.400479 | 8.2:-46915128 | None:intergenic |
| CTTCCGTCAACATCACAAAA+AGG | 0.405174 | 8.2:-46914982 | None:intergenic |
| TGGTGAATGGGTTGACTATC+CGG | 0.405927 | 8.2:+46913958 | MS.gene032270:CDS |
| ACCAAAACCATATAAGCATT+TGG | 0.406858 | 8.2:-46914707 | None:intergenic |
| TTATCATATTCGCAACTACT+TGG | 0.410566 | 8.2:-46915084 | None:intergenic |
| TGAACATCTGACTGGAGTTT+CGG | 0.416949 | 8.2:+46913784 | MS.gene032270:CDS |
| ATGATAACTAACCAGACAAA+AGG | 0.421052 | 8.2:-46914754 | None:intergenic |
| ACAAAGAATGTAAAAGTTGT+TGG | 0.426209 | 8.2:+46914325 | MS.gene032270:CDS |
| TTGAAGCTAACAACGAATTC+GGG | 0.436304 | 8.2:-46915177 | None:intergenic |
| CTCTTTAGAACAAGCAAGCC+AGG | 0.436926 | 8.2:-46914632 | None:intergenic |
| CGTTTGATGTTCTATAAGAA+TGG | 0.440910 | 8.2:+46913938 | MS.gene032270:CDS |
| CATGCTATGACTAACAAAAT+GGG | 0.440985 | 8.2:+46914349 | MS.gene032270:CDS |
| TTCCACACCACATAACACTT+TGG | 0.442208 | 8.2:-46915129 | None:intergenic |
| GAGAAACCCTCAAAGTCATT+TGG | 0.450202 | 8.2:+46913716 | MS.gene032270:CDS |
| AACTTCACCAAATGACTTTG+AGG | 0.452663 | 8.2:-46913723 | None:intergenic |
| TGTTAGCTTCAAGTCCCCTT+TGG | 0.454526 | 8.2:+46915188 | MS.gene032270:CDS |
| GGACGAAGTTGTTTCTTGCC+AGG | 0.463537 | 8.2:-46915063 | None:intergenic |
| AAGCTAATGTTCGCTATGCC+TGG | 0.466581 | 8.2:+46914614 | MS.gene032270:CDS |
| AACATAGAGCTTCTTCGTCC+TGG | 0.466850 | 8.2:+46915045 | MS.gene032270:CDS |
| TCCTCATTAATCCACGCAAT+GGG | 0.469325 | 8.2:-46914115 | None:intergenic |
| TCAAAGTTGAGGTCGGTTGT+TGG | 0.470486 | 8.2:+46915657 | MS.gene032270:CDS |
| TGAAGAACCCAATAATATAA+GGG | 0.474155 | 8.2:+46914177 | MS.gene032270:CDS |
| GGTTGTTAAACAAATGAAGT+TGG | 0.477778 | 8.2:+46913820 | MS.gene032270:CDS |
| ACTTCACCAAATGACTTTGA+GGG | 0.481435 | 8.2:-46913722 | None:intergenic |
| TAATCATTTAAATCTATGTC+TGG | 0.481642 | 8.2:-46914406 | None:intergenic |
| CACTCAATCAAAAGCGAAAG+AGG | 0.483070 | 8.2:+46913747 | MS.gene032270:CDS |
| GTTGAGATTTATCGCAGCTC+AGG | 0.483099 | 8.2:+46914523 | MS.gene032270:CDS |
| TATCAGACTTTCTAATGCCC+AGG | 0.488555 | 8.2:-46914498 | None:intergenic |
| CTGGCTTGCTTGTTCTAAAG+AGG | 0.492645 | 8.2:+46914633 | MS.gene032270:CDS |
| TCCGGAGGATGTTGTTGACT+TGG | 0.498921 | 8.2:+46913976 | MS.gene032270:CDS |
| TTGTTGCATCATCAAACTCT+CGG | 0.499366 | 8.2:-46914306 | None:intergenic |
| AGTCAGATGTTCAACACATT+GGG | 0.499388 | 8.2:-46913774 | None:intergenic |
| AAGCAGGTTGATATCACAAA+AGG | 0.499560 | 8.2:+46914580 | MS.gene032270:CDS |
| ACCCAATAATATAAGGGAGC+AGG | 0.499841 | 8.2:+46914183 | MS.gene032270:CDS |
| TTCCTCATTAATCCACGCAA+TGG | 0.504148 | 8.2:-46914116 | None:intergenic |
| CTTACAGGAATGAGTTCCCT+GGG | 0.508036 | 8.2:+46914481 | MS.gene032270:CDS |
| TCTTACAGGAATGAGTTCCC+TGG | 0.515121 | 8.2:+46914480 | MS.gene032270:CDS |
| ACCAAGTCAACAACATCCTC+CGG | 0.519855 | 8.2:-46913977 | None:intergenic |
| GTTCTATAAGAATGGTGAAT+GGG | 0.532062 | 8.2:+46913946 | MS.gene032270:CDS |
| AAAAGATTTCAAAATCAAGA+AGG | 0.532698 | 8.2:+46914003 | MS.gene032270:CDS |
| GTTGTAGAGGTAGAGTTAGA+TGG | 0.534366 | 8.2:+46914028 | MS.gene032270:CDS |
| GCTGCAGTTATTCGAAAAGC+AGG | 0.535279 | 8.2:+46914564 | MS.gene032270:CDS |
| TGATAACTAACCAGACAAAA+GGG | 0.540717 | 8.2:-46914753 | None:intergenic |
| ATAATAACTGACCAATGACT+TGG | 0.544389 | 8.2:-46913885 | None:intergenic |
| AATCAAGAAGGCAGTTGTAG+AGG | 0.545073 | 8.2:+46914015 | MS.gene032270:CDS |
| TGTTCTATAAGAATGGTGAA+TGG | 0.545690 | 8.2:+46913945 | MS.gene032270:CDS |
| GATATCACAAAAGGAGTTCG+AGG | 0.562997 | 8.2:+46914589 | MS.gene032270:CDS |
| GTTTGCAACAACCCATTGCG+TGG | 0.564254 | 8.2:+46914104 | MS.gene032270:CDS |
| ACTGTCTTAAACGTTAAGCA+AGG | 0.567681 | 8.2:+46915899 | MS.gene032270:CDS |
| AATATACAATGTTGTATCCA+AGG | 0.569110 | 8.2:+46915701 | MS.gene032270:CDS |
| CAGTCAGATGTTCAACACAT+TGG | 0.569289 | 8.2:-46913775 | None:intergenic |
| ATGATTTCATGTCAAAGTTG+AGG | 0.572626 | 8.2:+46915646 | MS.gene032270:CDS |
| TTAAACGTTAAGCAAGGGTG+AGG | 0.573399 | 8.2:+46915905 | MS.gene032270:CDS |
| AAGACAGTTGATCCACCACT+TGG | 0.574839 | 8.2:-46915884 | None:intergenic |
| ATCCAATGAAATAAATGGGG+TGG | 0.575535 | 8.2:+46914258 | MS.gene032270:CDS |
| TTTCATGTCAAAGTTGAGGT+CGG | 0.591171 | 8.2:+46915650 | MS.gene032270:CDS |
| ACCCATTGCGTGGATTAATG+AGG | 0.591261 | 8.2:+46914114 | MS.gene032270:CDS |
| ACAGTTGATCCACCACTTGG+TGG | 0.597685 | 8.2:-46915881 | None:intergenic |
| CAATAATATAAGGGAGCAGG+AGG | 0.600211 | 8.2:+46914186 | MS.gene032270:CDS |
| GCCCAAAGTGTTATGTGGTG+TGG | 0.606900 | 8.2:+46915127 | MS.gene032270:CDS |
| CAATGTGTTGAACATCTGAC+TGG | 0.607572 | 8.2:+46913776 | MS.gene032270:CDS |
| AACTAACCAGACAAAAGGGT+GGG | 0.620059 | 8.2:-46914749 | None:intergenic |
| ATGCAGAGACCACCAAGTGG+TGG | 0.622327 | 8.2:+46915872 | MS.gene032270:intron |
| CTGTCTTAAACGTTAAGCAA+GGG | 0.626094 | 8.2:+46915900 | MS.gene032270:CDS |
| ATATCACAAAAGGAGTTCGA+GGG | 0.628195 | 8.2:+46914590 | MS.gene032270:CDS |
| ATCAGACTTTCTAATGCCCA+GGG | 0.629414 | 8.2:-46914497 | None:intergenic |
| ACTCAATCAAAAGCGAAAGA+GGG | 0.631027 | 8.2:+46913748 | MS.gene032270:CDS |
| TCCTATGTCGTGTCATAATG+GGG | 0.633571 | 8.2:+46915022 | MS.gene032270:CDS |
| ATGCTATGACTAACAAAATG+GGG | 0.641198 | 8.2:+46914350 | MS.gene032270:CDS |
| CAGGAAAGTCAATGCAAACA+CGG | 0.641871 | 8.2:+46914542 | MS.gene032270:CDS |
| AGTTTCGGCACCAACAAGTG+TGG | 0.645505 | 8.2:+46913799 | MS.gene032270:CDS |
| AAACCATATAAGCATTTGGA+CGG | 0.646318 | 8.2:-46914703 | None:intergenic |
| ATTGCGTGGATTAATGAGGA+AGG | 0.650592 | 8.2:+46914118 | MS.gene032270:CDS |
| TTGCGAATATGATAATGGGG+TGG | 0.654141 | 8.2:+46915092 | MS.gene032270:CDS |
| TATATCCAATGAAATAAATG+GGG | 0.657738 | 8.2:+46914255 | MS.gene032270:CDS |
| TCAATGCCCAAAGTGTTATG+TGG | 0.664510 | 8.2:+46915122 | MS.gene032270:CDS |
| TCCCCATTATGACACGACAT+AGG | 0.673955 | 8.2:-46915023 | None:intergenic |
| GGTAGAGTTAGATGGCCAAG+AGG | 0.674190 | 8.2:+46914036 | MS.gene032270:CDS |
| TAGTTGCGAATATGATAATG+GGG | 0.678638 | 8.2:+46915089 | MS.gene032270:CDS |
| TATCACAAAAGGAGTTCGAG+GGG | 0.685383 | 8.2:+46914591 | MS.gene032270:CDS |
| TAACTAACCAGACAAAAGGG+TGG | 0.690155 | 8.2:-46914750 | None:intergenic |
| AATAATATAAGGGAGCAGGA+GGG | 0.702860 | 8.2:+46914187 | MS.gene032270:CDS |
| TTCATGCAGAGACCACCAAG+TGG | 0.744642 | 8.2:+46915869 | MS.gene032270:intron |
| TGAATGGGTTGACTATCCGG+AGG | 0.807342 | 8.2:+46913961 | MS.gene032270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAATTTTTATATGAAAAAT+TGG | + | chr8.2:46914432-46914451 | MS.gene032270:CDS | 10.0% |
| !!! | TTTTTCTAGAAATATTTATT+TGG | + | chr8.2:46915732-46915751 | MS.gene032270:intron | 10.0% |
| !! | ATATATCCAATGAAATAAAT+GGG | + | chr8.2:46914254-46914273 | MS.gene032270:CDS | 15.0% |
| !! | TTTATATGAAAAATTGGATA+TGG | + | chr8.2:46914438-46914457 | MS.gene032270:CDS | 15.0% |
| !!! | AATATGTTATGCTTAAATTT+TGG | + | chr8.2:46915785-46915804 | MS.gene032270:intron | 15.0% |
| !!! | TATTTTAACTATAAGAAAAG+TGG | + | chr8.2:46913905-46913924 | MS.gene032270:CDS | 15.0% |
| !! | AAAAGATTTCAAAATCAAGA+AGG | + | chr8.2:46914003-46914022 | MS.gene032270:CDS | 20.0% |
| !! | ATCGATAAGAAACATAATAT+GGG | - | chr8.2:46915508-46915527 | None:intergenic | 20.0% |
| !! | CATATATCCAATGAAATAAA+TGG | + | chr8.2:46914253-46914272 | MS.gene032270:CDS | 20.0% |
| !! | TAATCATTTAAATCTATGTC+TGG | - | chr8.2:46914409-46914428 | None:intergenic | 20.0% |
| !! | TATATCCAATGAAATAAATG+GGG | + | chr8.2:46914255-46914274 | MS.gene032270:CDS | 20.0% |
| !!! | CACGACATAATTTTTTTTAA+AGG | - | chr8.2:46915236-46915255 | None:intergenic | 20.0% |
| !!! | GTTATCATAGATTATTTTGT+TGG | + | chr8.2:46914920-46914939 | MS.gene032270:intron | 20.0% |
| !!! | TTTAAGACATAGACATAAAT+TGG | - | chr8.2:46915567-46915586 | None:intergenic | 20.0% |
| !!! | TTTTTCCCTAAAAATTTTGT+TGG | + | chr8.2:46914148-46914167 | MS.gene032270:CDS | 20.0% |
| ! | AATATACAATGTTGTATCCA+AGG | + | chr8.2:46915701-46915720 | MS.gene032270:CDS | 25.0% |
| ! | ACAAAGAATGTAAAAGTTGT+TGG | + | chr8.2:46914325-46914344 | MS.gene032270:CDS | 25.0% |
| ! | ATAAGAAACATAATATGGGA+AGG | - | chr8.2:46915504-46915523 | None:intergenic | 25.0% |
| ! | CATCGATAAGAAACATAATA+TGG | - | chr8.2:46915509-46915528 | None:intergenic | 25.0% |
| ! | CTAGAAAAAAAATTGTACCT+TGG | - | chr8.2:46915721-46915740 | None:intergenic | 25.0% |
| ! | TCATGTGATTCTTTCTTATT+AGG | - | chr8.2:46914223-46914242 | None:intergenic | 25.0% |
| ! | TGAAGAACCCAATAATATAA+GGG | + | chr8.2:46914177-46914196 | MS.gene032270:CDS | 25.0% |
| ! | TTAAGTGCTTTACTCTAATT+CGG | + | chr8.2:46915382-46915401 | MS.gene032270:intron | 25.0% |
| ! | TTGTCATCAATTATGGAATA+TGG | + | chr8.2:46914658-46914677 | MS.gene032270:CDS | 25.0% |
| !! | CAGAACCAACAAAATTTTTA+GGG | - | chr8.2:46914156-46914175 | None:intergenic | 25.0% |
| !! | TATTTTGTTGGATTTCTCAA+AGG | + | chr8.2:46914932-46914951 | MS.gene032270:intron | 25.0% |
| !! | TTATAGAACATCAAACGTTT+TGG | - | chr8.2:46913935-46913954 | None:intergenic | 25.0% |
| !!! | CAAAATTTTTAGGGAAAAAG+TGG | - | chr8.2:46914147-46914166 | None:intergenic | 25.0% |
| !!! | GAAAAGTGTTACATATCAAT+TGG | - | chr8.2:46915356-46915375 | None:intergenic | 25.0% |
| AAACCATATAAGCATTTGGA+CGG | - | chr8.2:46914706-46914725 | None:intergenic | 30.0% | |
| ACATTACCTTCAAAAACCAA+AGG | - | chr8.2:46915207-46915226 | None:intergenic | 30.0% | |
| ACCAAAACCATATAAGCATT+TGG | - | chr8.2:46914710-46914729 | None:intergenic | 30.0% | |
| AGAGGAATTGTCATCAATTA+TGG | + | chr8.2:46914651-46914670 | MS.gene032270:CDS | 30.0% | |
| AGTAGTTGCGAATATGATAA+TGG | + | chr8.2:46915087-46915106 | MS.gene032270:CDS | 30.0% | |
| ATAATAACTGACCAATGACT+TGG | - | chr8.2:46913888-46913907 | None:intergenic | 30.0% | |
| ATGATAACTAACCAGACAAA+AGG | - | chr8.2:46914757-46914776 | None:intergenic | 30.0% | |
| ATGATTTCATGTCAAAGTTG+AGG | + | chr8.2:46915646-46915665 | MS.gene032270:CDS | 30.0% | |
| ATGCTATGACTAACAAAATG+GGG | + | chr8.2:46914350-46914369 | MS.gene032270:CDS | 30.0% | |
| ATTACCTTCAAAAACCAAAG+GGG | - | chr8.2:46915205-46915224 | None:intergenic | 30.0% | |
| CATGCTATGACTAACAAAAT+GGG | + | chr8.2:46914349-46914368 | MS.gene032270:CDS | 30.0% | |
| CATTACCTTCAAAAACCAAA+GGG | - | chr8.2:46915206-46915225 | None:intergenic | 30.0% | |
| CGTTTGATGTTCTATAAGAA+TGG | + | chr8.2:46913938-46913957 | MS.gene032270:CDS | 30.0% | |
| CTGAAGAACCCAATAATATA+AGG | + | chr8.2:46914176-46914195 | MS.gene032270:CDS | 30.0% | |
| GGTTGTTAAACAAATGAAGT+TGG | + | chr8.2:46913820-46913839 | MS.gene032270:CDS | 30.0% | |
| GTAGTTGCGAATATGATAAT+GGG | + | chr8.2:46915088-46915107 | MS.gene032270:CDS | 30.0% | |
| GTTCTATAAGAATGGTGAAT+GGG | + | chr8.2:46913946-46913965 | MS.gene032270:CDS | 30.0% | |
| TCATGCTATGACTAACAAAA+TGG | + | chr8.2:46914348-46914367 | MS.gene032270:CDS | 30.0% | |
| TGATAACTAACCAGACAAAA+GGG | - | chr8.2:46914756-46914775 | None:intergenic | 30.0% | |
| TGTTCTATAAGAATGGTGAA+TGG | + | chr8.2:46913945-46913964 | MS.gene032270:CDS | 30.0% | |
| TTATCATATTCGCAACTACT+TGG | - | chr8.2:46915087-46915106 | None:intergenic | 30.0% | |
| ! | AAAAGCACAGAAAAAGGAAT+GGG | - | chr8.2:46915459-46915478 | None:intergenic | 30.0% |
| ! | GAAGATAAAAGCACAGAAAA+AGG | - | chr8.2:46915465-46915484 | None:intergenic | 30.0% |
| ! | GCAGAACCAACAAAATTTTT+AGG | - | chr8.2:46914157-46914176 | None:intergenic | 30.0% |
| ! | TAAAAGCACAGAAAAAGGAA+TGG | - | chr8.2:46915460-46915479 | None:intergenic | 30.0% |
| ! | TAGTTGCGAATATGATAATG+GGG | + | chr8.2:46915089-46915108 | MS.gene032270:CDS | 30.0% |
| ! | TCCAAATGCTTATATGGTTT+TGG | + | chr8.2:46914706-46914725 | MS.gene032270:CDS | 30.0% |
| ! | TCGGCTATATTTTCTTAACA+TGG | - | chr8.2:46914290-46914309 | None:intergenic | 30.0% |
| AAAAAGGTGAACTGTGAACA+TGG | - | chr8.2:46914969-46914988 | None:intergenic | 35.0% | |
| AAAAATTGAGCACAACCTCT+TGG | - | chr8.2:46914054-46914073 | None:intergenic | 35.0% | |
| AAAAGGTGAACTGTGAACAT+GGG | - | chr8.2:46914968-46914987 | None:intergenic | 35.0% | |
| AACTTCACCAAATGACTTTG+AGG | - | chr8.2:46913726-46913745 | None:intergenic | 35.0% | |
| AATAATATAAGGGAGCAGGA+GGG | + | chr8.2:46914187-46914206 | MS.gene032270:CDS | 35.0% | |
| ACAGAAAAAGGAATGGGAAA+AGG | - | chr8.2:46915453-46915472 | None:intergenic | 35.0% | |
| ACTCAATCAAAAGCGAAAGA+GGG | + | chr8.2:46913748-46913767 | MS.gene032270:CDS | 35.0% | |
| ACTGTCTTAAACGTTAAGCA+AGG | + | chr8.2:46915899-46915918 | MS.gene032270:CDS | 35.0% | |
| ACTTCACCAAATGACTTTGA+GGG | - | chr8.2:46913725-46913744 | None:intergenic | 35.0% | |
| AGTCAGATGTTCAACACATT+GGG | - | chr8.2:46913777-46913796 | None:intergenic | 35.0% | |
| ATACCATCAACAACGCATAT+TGG | - | chr8.2:46915533-46915552 | None:intergenic | 35.0% | |
| ATATCACAAAAGGAGTTCGA+GGG | + | chr8.2:46914590-46914609 | MS.gene032270:CDS | 35.0% | |
| ATCCAATGAAATAAATGGGG+TGG | + | chr8.2:46914258-46914277 | MS.gene032270:CDS | 35.0% | |
| ATCCACCCCATTTATTTCAT+TGG | - | chr8.2:46914263-46914282 | None:intergenic | 35.0% | |
| CATGAAGCCAACTAAACATT+AGG | - | chr8.2:46915855-46915874 | None:intergenic | 35.0% | |
| CTGTCTTAAACGTTAAGCAA+GGG | + | chr8.2:46915900-46915919 | MS.gene032270:CDS | 35.0% | |
| CTTGAAGCTAACAACGAATT+CGG | - | chr8.2:46915181-46915200 | None:intergenic | 35.0% | |
| GCACAGAAAATGTTTCTTAC+AGG | + | chr8.2:46914466-46914485 | MS.gene032270:CDS | 35.0% | |
| TACCATCAACAACGCATATT+GGG | - | chr8.2:46915532-46915551 | None:intergenic | 35.0% | |
| TATGCCTCCTAATGTTTAGT+TGG | + | chr8.2:46915845-46915864 | MS.gene032270:intron | 35.0% | |
| TCCTGATATTTCCAAGTCAT+TGG | + | chr8.2:46913874-46913893 | MS.gene032270:CDS | 35.0% | |
| TCCTGCTCCCTTATATTATT+GGG | - | chr8.2:46914187-46914206 | None:intergenic | 35.0% | |
| TGTTTAACAACCACACTTGT+TGG | - | chr8.2:46913812-46913831 | None:intergenic | 35.0% | |
| TTCCTATGTCGTGTCATAAT+GGG | + | chr8.2:46915021-46915040 | MS.gene032270:CDS | 35.0% | |
| TTGAAGCTAACAACGAATTC+GGG | - | chr8.2:46915180-46915199 | None:intergenic | 35.0% | |
| TTGTTGCATCATCAAACTCT+CGG | - | chr8.2:46914309-46914328 | None:intergenic | 35.0% | |
| TTTATCTTCCATGAGAAACG+TGG | + | chr8.2:46915476-46915495 | MS.gene032270:intron | 35.0% | |
| TTTCATGTCAAAGTTGAGGT+CGG | + | chr8.2:46915650-46915669 | MS.gene032270:CDS | 35.0% | |
| ! | ACCAATGACTTGGAAATATC+AGG | - | chr8.2:46913878-46913897 | None:intergenic | 35.0% |
| ! | TCACCTTTTTGTGATGTTGA+CGG | + | chr8.2:46914979-46914998 | MS.gene032270:CDS | 35.0% |
| !! | AAGCAGGTTGATATCACAAA+AGG | + | chr8.2:46914580-46914599 | MS.gene032270:CDS | 35.0% |
| AACTAACCAGACAAAAGGGT+GGG | - | chr8.2:46914752-46914771 | None:intergenic | 40.0% | |
| AATCAAGAAGGCAGTTGTAG+AGG | + | chr8.2:46914015-46914034 | MS.gene032270:CDS | 40.0% | |
| ACCCAATAATATAAGGGAGC+AGG | + | chr8.2:46914183-46914202 | MS.gene032270:CDS | 40.0% | |
| ATCAGACTTTCTAATGCCCA+GGG | - | chr8.2:46914500-46914519 | None:intergenic | 40.0% | |
| CAATAATATAAGGGAGCAGG+AGG | + | chr8.2:46914186-46914205 | MS.gene032270:CDS | 40.0% | |
| CAATGTGTTGAACATCTGAC+TGG | + | chr8.2:46913776-46913795 | MS.gene032270:CDS | 40.0% | |
| CACTCAATCAAAAGCGAAAG+AGG | + | chr8.2:46913747-46913766 | MS.gene032270:CDS | 40.0% | |
| CAGGAAAGTCAATGCAAACA+CGG | + | chr8.2:46914542-46914561 | MS.gene032270:CDS | 40.0% | |
| CAGTCAGATGTTCAACACAT+TGG | - | chr8.2:46913778-46913797 | None:intergenic | 40.0% | |
| CTCCTGCTCCCTTATATTAT+TGG | - | chr8.2:46914188-46914207 | None:intergenic | 40.0% | |
| CTTCCGTCAACATCACAAAA+AGG | - | chr8.2:46914985-46915004 | None:intergenic | 40.0% | |
| GAAGCCAACTAAACATTAGG+AGG | - | chr8.2:46915852-46915871 | None:intergenic | 40.0% | |
| GAGAAACCCTCAAAGTCATT+TGG | + | chr8.2:46913716-46913735 | MS.gene032270:CDS | 40.0% | |
| GATATCACAAAAGGAGTTCG+AGG | + | chr8.2:46914589-46914608 | MS.gene032270:CDS | 40.0% | |
| GTTCCTATGTCGTGTCATAA+TGG | + | chr8.2:46915020-46915039 | MS.gene032270:CDS | 40.0% | |
| GTTGTAGAGGTAGAGTTAGA+TGG | + | chr8.2:46914028-46914047 | MS.gene032270:CDS | 40.0% | |
| TAACTAACCAGACAAAAGGG+TGG | - | chr8.2:46914753-46914772 | None:intergenic | 40.0% | |
| TATCACAAAAGGAGTTCGAG+GGG | + | chr8.2:46914591-46914610 | MS.gene032270:CDS | 40.0% | |
| TATCAGACTTTCTAATGCCC+AGG | - | chr8.2:46914501-46914520 | None:intergenic | 40.0% | |
| TCCACACCACATAACACTTT+GGG | - | chr8.2:46915131-46915150 | None:intergenic | 40.0% | |
| TCCTATGTCGTGTCATAATG+GGG | + | chr8.2:46915022-46915041 | MS.gene032270:CDS | 40.0% | |
| TCCTCATTAATCCACGCAAT+GGG | - | chr8.2:46914118-46914137 | None:intergenic | 40.0% | |
| TCTCCGTCCAAATGCTTATA+TGG | + | chr8.2:46914700-46914719 | MS.gene032270:CDS | 40.0% | |
| TGAACATCTGACTGGAGTTT+CGG | + | chr8.2:46913784-46913803 | MS.gene032270:CDS | 40.0% | |
| TTCCACACCACATAACACTT+TGG | - | chr8.2:46915132-46915151 | None:intergenic | 40.0% | |
| TTCCTCATTAATCCACGCAA+TGG | - | chr8.2:46914119-46914138 | None:intergenic | 40.0% | |
| ! | ATTGCGTGGATTAATGAGGA+AGG | + | chr8.2:46914118-46914137 | MS.gene032270:CDS | 40.0% |
| ! | TCAATGCCCAAAGTGTTATG+TGG | + | chr8.2:46915122-46915141 | MS.gene032270:CDS | 40.0% |
| ! | TTTTGTGATGTTGACGGAAG+TGG | + | chr8.2:46914985-46915004 | MS.gene032270:CDS | 40.0% |
| !! | TTGCGAATATGATAATGGGG+TGG | + | chr8.2:46915092-46915111 | MS.gene032270:CDS | 40.0% |
| !!! | AAGTCCCCTTTGGTTTTTGA+AGG | + | chr8.2:46915198-46915217 | MS.gene032270:CDS | 40.0% |
| AACATAGAGCTTCTTCGTCC+TGG | + | chr8.2:46915045-46915064 | MS.gene032270:CDS | 45.0% | |
| AAGACAGTTGATCCACCACT+TGG | - | chr8.2:46915887-46915906 | None:intergenic | 45.0% | |
| AAGCTAATGTTCGCTATGCC+TGG | + | chr8.2:46914614-46914633 | MS.gene032270:CDS | 45.0% | |
| ACCAAGTCAACAACATCCTC+CGG | - | chr8.2:46913980-46913999 | None:intergenic | 45.0% | |
| CTTACAGGAATGAGTTCCCT+GGG | + | chr8.2:46914481-46914500 | MS.gene032270:CDS | 45.0% | |
| GCTGCAGTTATTCGAAAAGC+AGG | + | chr8.2:46914564-46914583 | MS.gene032270:CDS | 45.0% | |
| GTTGAGATTTATCGCAGCTC+AGG | + | chr8.2:46914523-46914542 | MS.gene032270:CDS | 45.0% | |
| TCAAAGTTGAGGTCGGTTGT+TGG | + | chr8.2:46915657-46915676 | MS.gene032270:CDS | 45.0% | |
| TCCCCATTATGACACGACAT+AGG | - | chr8.2:46915026-46915045 | None:intergenic | 45.0% | |
| TCTTACAGGAATGAGTTCCC+TGG | + | chr8.2:46914480-46914499 | MS.gene032270:CDS | 45.0% | |
| TGCCCAATATGCGTTGTTGA+TGG | + | chr8.2:46915527-46915546 | MS.gene032270:intron | 45.0% | |
| TGTTGCTAAGTTGTACCGCT+CGG | + | chr8.2:46915424-46915443 | MS.gene032270:intron | 45.0% | |
| ! | ACCCATTGCGTGGATTAATG+AGG | + | chr8.2:46914114-46914133 | MS.gene032270:CDS | 45.0% |
| ! | TGTTAGCTTCAAGTCCCCTT+TGG | + | chr8.2:46915188-46915207 | MS.gene032270:CDS | 45.0% |
| !! | CTCTTTAGAACAAGCAAGCC+AGG | - | chr8.2:46914635-46914654 | None:intergenic | 45.0% |
| !! | CTGGCTTGCTTGTTCTAAAG+AGG | + | chr8.2:46914633-46914652 | MS.gene032270:CDS | 45.0% |
| !! | TGGTGAATGGGTTGACTATC+CGG | + | chr8.2:46913958-46913977 | MS.gene032270:CDS | 45.0% |
| AATGGGAAAAGGTAGCCGAG+CGG | - | chr8.2:46915442-46915461 | None:intergenic | 50.0% | |
| ACAGTTGATCCACCACTTGG+TGG | - | chr8.2:46915884-46915903 | None:intergenic | 50.0% | |
| AGTTTCGGCACCAACAAGTG+TGG | + | chr8.2:46913799-46913818 | MS.gene032270:CDS | 50.0% | |
| GGAAGGAACCACGTTTCTCA+TGG | - | chr8.2:46915487-46915506 | None:intergenic | 50.0% | |
| GGTAGAGTTAGATGGCCAAG+AGG | + | chr8.2:46914036-46914055 | MS.gene032270:CDS | 50.0% | |
| GTTTGCAACAACCCATTGCG+TGG | + | chr8.2:46914104-46914123 | MS.gene032270:CDS | 50.0% | |
| TTCATGCAGAGACCACCAAG+TGG | + | chr8.2:46915869-46915888 | MS.gene032270:intron | 50.0% | |
| ! | CTGTTACCCACCCTTTTGTC+TGG | + | chr8.2:46914743-46914762 | MS.gene032270:CDS | 50.0% |
| ! | GCCCAAAGTGTTATGTGGTG+TGG | + | chr8.2:46915127-46915146 | MS.gene032270:CDS | 50.0% |
| ! | TCCGGAGGATGTTGTTGACT+TGG | + | chr8.2:46913976-46913995 | MS.gene032270:CDS | 50.0% |
| !! | GGACGAAGTTGTTTCTTGCC+AGG | - | chr8.2:46915066-46915085 | None:intergenic | 50.0% |
| !! | TGAATGGGTTGACTATCCGG+AGG | + | chr8.2:46913961-46913980 | MS.gene032270:CDS | 50.0% |
| ATGCAGAGACCACCAAGTGG+TGG | + | chr8.2:46915872-46915891 | MS.gene032270:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 46913710 | 46915925 | 46913710 | ID=MS.gene032270 |
| chr8.2 | mRNA | 46913710 | 46915925 | 46913710 | ID=MS.gene032270.t1;Parent=MS.gene032270 |
| chr8.2 | exon | 46913710 | 46914764 | 46913710 | ID=MS.gene032270.t1.exon1;Parent=MS.gene032270.t1 |
| chr8.2 | CDS | 46913710 | 46914764 | 46913710 | ID=cds.MS.gene032270.t1;Parent=MS.gene032270.t1 |
| chr8.2 | exon | 46914978 | 46915224 | 46914978 | ID=MS.gene032270.t1.exon2;Parent=MS.gene032270.t1 |
| chr8.2 | CDS | 46914978 | 46915224 | 46914978 | ID=cds.MS.gene032270.t1;Parent=MS.gene032270.t1 |
| chr8.2 | exon | 46915627 | 46915722 | 46915627 | ID=MS.gene032270.t1.exon3;Parent=MS.gene032270.t1 |
| chr8.2 | CDS | 46915627 | 46915722 | 46915627 | ID=cds.MS.gene032270.t1;Parent=MS.gene032270.t1 |
| chr8.2 | exon | 46915878 | 46915925 | 46915878 | ID=MS.gene032270.t1.exon4;Parent=MS.gene032270.t1 |
| chr8.2 | CDS | 46915878 | 46915925 | 46915878 | ID=cds.MS.gene032270.t1;Parent=MS.gene032270.t1 |
| Gene Sequence |
| Protein sequence |
