Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008576.t1 | XP_013460360.1 | 97.3 | 226 | 6 | 0 | 1 | 226 | 1 | 226 | 6.80E-118 | 433.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008576.t1 | Q96S44 | 49.1 | 220 | 109 | 2 | 10 | 226 | 34 | 253 | 1.4e-47 | 191.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008576.t1 | I3SWE5 | 97.3 | 226 | 6 | 0 | 1 | 226 | 1 | 226 | 4.9e-118 | 433.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene008576 | MS.gene58136 | PPI |
| MS.gene008576 | MS.gene01984 | PPI |
| MS.gene008576 | MS.gene030686 | PPI |
| MS.gene008576 | MS.gene003175 | PPI |
| MS.gene008576 | MS.gene28161 | PPI |
| MS.gene28454 | MS.gene008576 | PPI |
| MS.gene008576 | MS.gene006626 | PPI |
| MS.gene008576 | MS.gene70283 | PPI |
| MS.gene008576 | MS.gene70282 | PPI |
| MS.gene045570 | MS.gene008576 | PPI |
| MS.gene008576 | MS.gene02854 | PPI |
| MS.gene008576 | MS.gene58159 | PPI |
| MS.gene008576 | MS.gene28183 | PPI |
| MS.gene008576 | MS.gene048301 | PPI |
| MS.gene008576 | MS.gene030685 | PPI |
| MS.gene008576 | MS.gene030707 | PPI |
| MS.gene58134 | MS.gene008576 | PPI |
| MS.gene008576 | MS.gene70303 | PPI |
| MS.gene008576 | MS.gene031682 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008576.t1 | MTR_3g465790 | 97.345 | 226 | 6 | 0 | 1 | 226 | 1 | 226 | 3.30e-166 | 457 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008576.t1 | AT5G26110 | 79.204 | 226 | 47 | 0 | 1 | 226 | 1 | 226 | 4.86e-135 | 379 |
| MS.gene008576.t1 | AT5G26110 | 79.204 | 226 | 47 | 0 | 1 | 226 | 1 | 226 | 4.86e-135 | 379 |
| MS.gene008576.t1 | AT5G26110 | 79.012 | 162 | 34 | 0 | 65 | 226 | 2 | 163 | 5.16e-95 | 275 |
| MS.gene008576.t1 | AT1G08120 | 75.439 | 57 | 14 | 0 | 1 | 57 | 5 | 61 | 4.42e-23 | 89.4 |
Find 44 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGATGTATTTCTTGAATT+CGG | 0.327087 | 3.3:-53926413 | MS.gene008576:CDS |
| CACGATGGTGGTCTTGTTCA+TGG | 0.374963 | 3.3:-53926320 | MS.gene008576:CDS |
| GGCAAGATTGCATCTCAAAT+TGG | 0.384705 | 3.3:-53926362 | MS.gene008576:CDS |
| CAACCAAGGCAAGGCGACTT+GGG | 0.419060 | 3.3:-53926514 | MS.gene008576:CDS |
| GTGTAGGTTCTTATTGACTT+TGG | 0.438221 | 3.3:-53926140 | MS.gene008576:intron |
| ACAACCAAGGCAAGGCGACT+TGG | 0.438223 | 3.3:-53926515 | MS.gene008576:CDS |
| AAATCGACGGCTTTATCTTC+TGG | 0.462118 | 3.3:+53926095 | None:intergenic |
| AACCCCAAGTCGCCTTGCCT+TGG | 0.476565 | 3.3:+53926511 | None:intergenic |
| ACCACTGTTTCGATGATTTG+CGG | 0.490798 | 3.3:+53924467 | None:intergenic |
| GAAGTACAGACATCCGACTT+TGG | 0.515456 | 3.3:-53926990 | MS.gene008576:CDS |
| AAAGAATGATACTGATCAGT+TGG | 0.526434 | 3.3:-53926270 | MS.gene008576:intron |
| TTAACATTTGAATTTGTCGA+TGG | 0.536270 | 3.3:-53926446 | MS.gene008576:CDS |
| TACCCCTGTGTTATATGCTG+TGG | 0.540309 | 3.3:-53926486 | MS.gene008576:CDS |
| GTTTCGATGCATTCTTCATG+TGG | 0.542927 | 3.3:-53926050 | MS.gene008576:CDS |
| AGAAATACATCTTTGACTGA+AGG | 0.543009 | 3.3:+53926422 | None:intergenic |
| ATGAAGAATGCATCGAAACA+AGG | 0.554852 | 3.3:+53926054 | None:intergenic |
| GTCTGCAAGCTTGTTCATTG+TGG | 0.559060 | 3.3:+53924441 | None:intergenic |
| TTCTAAAACATACAAATCGA+CGG | 0.561624 | 3.3:+53926082 | None:intergenic |
| AATGTTAAAGTGTGCAACAC+AGG | 0.565875 | 3.3:+53926461 | None:intergenic |
| TTTCTTGAATTCGGATCATG+TGG | 0.569490 | 3.3:-53926404 | MS.gene008576:CDS |
| GGACGAAAGAGGACCATGGT+TGG | 0.583853 | 3.3:-53924323 | MS.gene008576:CDS |
| CTGTTTCGATGATTTGCGGT+AGG | 0.590090 | 3.3:+53924471 | None:intergenic |
| GGCATCAATGAAGAGCGGTT+AGG | 0.593530 | 3.3:-53926383 | MS.gene008576:CDS |
| CGAGGTGCACAACCAAGGCA+AGG | 0.594894 | 3.3:-53926523 | MS.gene008576:CDS |
| AACCAAGGCAAGGCGACTTG+GGG | 0.602601 | 3.3:-53926513 | MS.gene008576:CDS |
| TGCGACAAAGAGGACGAAAG+AGG | 0.603308 | 3.3:-53924334 | MS.gene008576:CDS |
| TTGTTTGATGAGAATGAGAG+AGG | 0.606756 | 3.3:+53927480 | None:intergenic |
| GGATCCACAGCATATAACAC+AGG | 0.609862 | 3.3:+53926482 | None:intergenic |
| TGAAGAATGCATCGAAACAA+GGG | 0.628508 | 3.3:+53926055 | None:intergenic |
| GTCAACTTAGCATCCAAAGT+CGG | 0.634659 | 3.3:+53926977 | None:intergenic |
| GGAGGCGAGGTGCACAACCA+AGG | 0.637554 | 3.3:-53926528 | MS.gene008576:CDS |
| GATCCACAGCATATAACACA+GGG | 0.645198 | 3.3:+53926483 | None:intergenic |
| CAACTTGTAGTGCGACAAAG+AGG | 0.647624 | 3.3:-53924344 | MS.gene008576:intron |
| ACAATGAACAAGCTTGCAGA+CGG | 0.653580 | 3.3:-53924439 | MS.gene008576:intron |
| AACTCAGAATTATCCAACCA+TGG | 0.654117 | 3.3:+53924310 | None:intergenic |
| ATTGCAAAGTTACACGATGG+TGG | 0.654578 | 3.3:-53926332 | MS.gene008576:CDS |
| GCATTCTTCATGTGGTAATG+TGG | 0.655251 | 3.3:-53926042 | MS.gene008576:intron |
| TCTCTCATTCTCATCAAACA+AGG | 0.656080 | 3.3:-53927478 | MS.gene008576:CDS |
| GACACTCAAGCGCTTAAATG+CGG | 0.662510 | 3.3:-53926957 | MS.gene008576:intron |
| ACCGCAAATCATCGAAACAG+TGG | 0.688110 | 3.3:-53924468 | MS.gene008576:CDS |
| CATGTGGCATCAATGAAGAG+CGG | 0.710732 | 3.3:-53926388 | MS.gene008576:CDS |
| AAGAGGACGAAAGAGGACCA+TGG | 0.717008 | 3.3:-53924327 | MS.gene008576:CDS |
| GTAATTGCAAAGTTACACGA+TGG | 0.807657 | 3.3:-53926335 | MS.gene008576:CDS |
| ATCCACAGCATATAACACAG+GGG | 0.823142 | 3.3:+53926484 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATTTATTACTTTTACTT+AGG | - | chr3.3:53925611-53925630 | MS.gene008576:intron | 10.0% |
| !!! | TTAATTTAAAATTGATTCAT+GGG | - | chr3.3:53924483-53924502 | MS.gene008576:CDS | 10.0% |
| !!! | TTTTTATATTTGATTAAGTT+TGG | - | chr3.3:53924919-53924938 | MS.gene008576:intron | 10.0% |
| !! | AAGAATAAAAACTAAGTATT+TGG | + | chr3.3:53926691-53926710 | None:intergenic | 15.0% |
| !! | AATTTCTAATAGTATAAAAC+AGG | + | chr3.3:53926052-53926071 | None:intergenic | 15.0% |
| !! | ATATATATATATAGACACAT+AGG | - | chr3.3:53926201-53926220 | MS.gene008576:intron | 15.0% |
| !! | ATATATATATATATATCCCA+TGG | + | chr3.3:53926187-53926206 | None:intergenic | 15.0% |
| !! | ATCTGTTATAATTTAATCTA+AGG | + | chr3.3:53926857-53926876 | None:intergenic | 15.0% |
| !! | ATTGAATTTGTAATAGATTA+TGG | - | chr3.3:53924729-53924748 | MS.gene008576:intron | 15.0% |
| !! | TTAGATTAAATTATAACAGA+TGG | - | chr3.3:53926856-53926875 | MS.gene008576:intron | 15.0% |
| !! | TTAGATTGAATTAAAATAGA+TGG | + | chr3.3:53926280-53926299 | None:intergenic | 15.0% |
| !!! | ATCTATTTTAATTCAATCTA+AGG | - | chr3.3:53926279-53926298 | MS.gene008576:CDS | 15.0% |
| !!! | GAATCAATTTTAAATTAACA+AGG | + | chr3.3:53924481-53924500 | None:intergenic | 15.0% |
| !!! | GTTAATTTAAAATTGATTCA+TGG | - | chr3.3:53924482-53924501 | MS.gene008576:CDS | 15.0% |
| !! | AAAGATGTATTTCTTGAATT+CGG | - | chr3.3:53925414-53925433 | MS.gene008576:intron | 20.0% |
| !! | ATTGATTATTGAAATTTGTC+TGG | - | chr3.3:53927310-53927329 | MS.gene008576:intron | 20.0% |
| !! | CAAATTAAATGTGATTTACT+TGG | + | chr3.3:53926560-53926579 | None:intergenic | 20.0% |
| !! | CAATACTAAACAAAATTAGA+TGG | + | chr3.3:53927423-53927442 | None:intergenic | 20.0% |
| !! | TAAAATAGATGGTTAAGATT+TGG | + | chr3.3:53926269-53926288 | None:intergenic | 20.0% |
| !! | TATTCAACACTATAACAATT+AGG | + | chr3.3:53925839-53925858 | None:intergenic | 20.0% |
| !! | TGTTATATACAGGTAAATAA+GGG | + | chr3.3:53927185-53927204 | None:intergenic | 20.0% |
| !! | TTGTTATATACAGGTAAATA+AGG | + | chr3.3:53927186-53927205 | None:intergenic | 20.0% |
| !!! | AAAACTAAGTATTTGGAATA+TGG | + | chr3.3:53926684-53926703 | None:intergenic | 20.0% |
| !!! | AAAGTTGATTTTTTACGTAA+TGG | + | chr3.3:53924435-53924454 | None:intergenic | 20.0% |
| !!! | AAAGTTTCAATTTTTGATTG+TGG | - | chr3.3:53924514-53924533 | MS.gene008576:intron | 20.0% |
| !!! | AAATTTTGAACAAGAACTTT+AGG | - | chr3.3:53926101-53926120 | MS.gene008576:CDS | 20.0% |
| !!! | AAGTTGATTTTTTACGTAAT+GGG | + | chr3.3:53924434-53924453 | None:intergenic | 20.0% |
| !!! | ATTTGACTTTCTTTTATCTT+TGG | + | chr3.3:53925028-53925047 | None:intergenic | 20.0% |
| !!! | ATTTTAAACATCAATACCAT+GGG | - | chr3.3:53926168-53926187 | MS.gene008576:intron | 20.0% |
| !!! | CATAATAATAAGAGTTTGTT+TGG | + | chr3.3:53925211-53925230 | None:intergenic | 20.0% |
| !!! | TATATACACCAAGTAATTTT+TGG | + | chr3.3:53926305-53926324 | None:intergenic | 20.0% |
| !!! | TATTGATTTTGTGAATTTGA+AGG | - | chr3.3:53924704-53924723 | MS.gene008576:intron | 20.0% |
| !!! | TCAATTTTAAATTAACAAGG+CGG | + | chr3.3:53924478-53924497 | None:intergenic | 20.0% |
| !!! | TTATCCTCTTAATGATTTTT+GGG | + | chr3.3:53926013-53926032 | None:intergenic | 20.0% |
| !!! | TTTATCCTCTTAATGATTTT+TGG | + | chr3.3:53926014-53926033 | None:intergenic | 20.0% |
| !!! | TTTATTTTCATAAGCTATCT+TGG | - | chr3.3:53925068-53925087 | MS.gene008576:intron | 20.0% |
| ! | AAAGTGACATATAATATGAG+AGG | + | chr3.3:53927091-53927110 | None:intergenic | 25.0% |
| ! | AAGTGACATATAATATGAGA+GGG | + | chr3.3:53927090-53927109 | None:intergenic | 25.0% |
| ! | AATAAGGGTGATATTGAAAA+TGG | + | chr3.3:53927170-53927189 | None:intergenic | 25.0% |
| ! | AATACTAAGGATATAACAAC+AGG | - | chr3.3:53925855-53925874 | MS.gene008576:intron | 25.0% |
| ! | AATATGCAATCAAGTTCATT+TGG | + | chr3.3:53927037-53927056 | None:intergenic | 25.0% |
| ! | ACTATAACAATTAGGACTAT+TGG | + | chr3.3:53925831-53925850 | None:intergenic | 25.0% |
| ! | AGAGTTTGAATTGAACAAAT+TGG | - | chr3.3:53924567-53924586 | MS.gene008576:intron | 25.0% |
| ! | ATACTAAGGATATAACAACA+GGG | - | chr3.3:53925856-53925875 | MS.gene008576:intron | 25.0% |
| ! | ATATATAGACACATAGGAAT+AGG | - | chr3.3:53926207-53926226 | MS.gene008576:intron | 25.0% |
| ! | ATATCACTAGAATATCAAGA+AGG | - | chr3.3:53927135-53927154 | MS.gene008576:intron | 25.0% |
| ! | CTATAACAATTAGGACTATT+GGG | + | chr3.3:53925830-53925849 | None:intergenic | 25.0% |
| ! | CTCTCAATTCATTTAGAAAA+TGG | - | chr3.3:53926504-53926523 | MS.gene008576:CDS | 25.0% |
| ! | TAAACAGTCTTTATTGCTTT+CGG | + | chr3.3:53926953-53926972 | None:intergenic | 25.0% |
| ! | TAAGTTTAATTCACACTCAT+TGG | - | chr3.3:53924383-53924402 | MS.gene008576:intron | 25.0% |
| ! | TACAAGATGTTGTTAAATAG+CGG | - | chr3.3:53924615-53924634 | MS.gene008576:intron | 25.0% |
| ! | TAGTGTCAACTTAAGAAAAT+GGG | - | chr3.3:53926454-53926473 | MS.gene008576:CDS | 25.0% |
| ! | TCACAAATAGTAAAATCTAG+CGG | + | chr3.3:53924677-53924696 | None:intergenic | 25.0% |
| ! | TCAGTACAGAAACTATATTA+TGG | + | chr3.3:53927289-53927308 | None:intergenic | 25.0% |
| ! | TTAACATTTGAATTTGTCGA+TGG | - | chr3.3:53925381-53925400 | MS.gene008576:intron | 25.0% |
| ! | TTAGTGTCAACTTAAGAAAA+TGG | - | chr3.3:53926453-53926472 | MS.gene008576:CDS | 25.0% |
| ! | TTTGAATTGTAAGCACTTTA+AGG | + | chr3.3:53926630-53926649 | None:intergenic | 25.0% |
| !! | AAAAAACTCAGGAATTTTGT+GGG | - | chr3.3:53926534-53926553 | MS.gene008576:intron | 25.0% |
| !! | CATTTTCTAAATGAATTGAG+AGG | + | chr3.3:53926506-53926525 | None:intergenic | 25.0% |
| !! | GATTTTAAACATCAATACCA+TGG | - | chr3.3:53926167-53926186 | MS.gene008576:intron | 25.0% |
| !! | TAAAAAACTCAGGAATTTTG+TGG | - | chr3.3:53926533-53926552 | MS.gene008576:intron | 25.0% |
| !! | TATTTCGTCTTGTTATATAC+AGG | + | chr3.3:53927195-53927214 | None:intergenic | 25.0% |
| !! | TGTTATAGTGTTGAATACTA+AGG | - | chr3.3:53925842-53925861 | MS.gene008576:intron | 25.0% |
| !! | TTATATTCGAGTTTATCTAG+TGG | + | chr3.3:53925182-53925201 | None:intergenic | 25.0% |
| !! | TTTTAACGATAGATAATGCA+AGG | - | chr3.3:53927216-53927235 | MS.gene008576:intron | 25.0% |
| !!! | AAATCTTTTTCATTCATCAC+CGG | - | chr3.3:53926356-53926375 | MS.gene008576:CDS | 25.0% |
| !!! | ATACTCTCTATTTCCTTTTT+TGG | - | chr3.3:53926322-53926341 | MS.gene008576:CDS | 25.0% |
| !!! | ATATGTCACTTTTGTAATGT+CGG | - | chr3.3:53927099-53927118 | MS.gene008576:intron | 25.0% |
| !!! | ATTTTGTTTTCTTGTTGTAG+AGG | - | chr3.3:53924758-53924777 | MS.gene008576:intron | 25.0% |
| !!! | TTCTAAAACATACAAATCGA+CGG | + | chr3.3:53925748-53925767 | None:intergenic | 25.0% |
| !!! | TTGCATATTTTTATCTGACA+AGG | - | chr3.3:53927048-53927067 | MS.gene008576:CDS | 25.0% |
| !!! | TTGTTTTGTATCTCCAAAAA+AGG | - | chr3.3:53926798-53926817 | MS.gene008576:intron | 25.0% |
| !!! | TTGTTTTGTTTCTCCAAAAA+AGG | + | chr3.3:53926338-53926357 | None:intergenic | 25.0% |
| !!! | TTTCTTAAGTTGACACTAAA+TGG | + | chr3.3:53926452-53926471 | None:intergenic | 25.0% |
| !!! | TTTTGTTTTCTTGTTGTAGA+GGG | - | chr3.3:53924759-53924778 | MS.gene008576:intron | 25.0% |
| AAAGAATGATACTGATCAGT+TGG | - | chr3.3:53925557-53925576 | MS.gene008576:intron | 30.0% | |
| AGAAATACATCTTTGACTGA+AGG | + | chr3.3:53925408-53925427 | None:intergenic | 30.0% | |
| ATCAAGTTCATTTGGTACAT+AGG | + | chr3.3:53927029-53927048 | None:intergenic | 30.0% | |
| ATCATCAGCATTAGTACAAA+TGG | + | chr3.3:53926150-53926169 | None:intergenic | 30.0% | |
| ATGGTTCGATTAAAAAACTC+AGG | - | chr3.3:53926523-53926542 | MS.gene008576:CDS | 30.0% | |
| CCTATATATGTATATGGGAT+AGG | + | chr3.3:53926930-53926949 | None:intergenic | 30.0% | |
| CCTATCCCATATACATATAT+AGG | - | chr3.3:53926927-53926946 | MS.gene008576:intron | 30.0% | |
| CTACAAGTTGTGAAAATGTA+CGG | + | chr3.3:53927473-53927492 | None:intergenic | 30.0% | |
| GAAGAAAGAAAGAAATGATC+CGG | + | chr3.3:53926378-53926397 | None:intergenic | 30.0% | |
| GCAATAAAGACTGTTTATAC+TGG | - | chr3.3:53926956-53926975 | MS.gene008576:intron | 30.0% | |
| GTCATTGATACATTGATGTA+AGG | - | chr3.3:53926715-53926734 | MS.gene008576:intron | 30.0% | |
| TCAAACTAAATTTGACACCA+TGG | + | chr3.3:53926244-53926263 | None:intergenic | 30.0% | |
| TGTATATAGTTGTGTCTGAT+TGG | - | chr3.3:53925235-53925254 | MS.gene008576:intron | 30.0% | |
| TTCGGCCTATATATGTATAT+GGG | + | chr3.3:53926935-53926954 | None:intergenic | 30.0% | |
| TTCTAAATGAATTGAGAGGA+TGG | + | chr3.3:53926502-53926521 | None:intergenic | 30.0% | |
| TTGAAATTTGTCTGGATAGA+TGG | - | chr3.3:53927318-53927337 | MS.gene008576:intron | 30.0% | |
| TTGACCCAAAAATCATTAAG+AGG | - | chr3.3:53926006-53926025 | MS.gene008576:intron | 30.0% | |
| TTTCGGCCTATATATGTATA+TGG | + | chr3.3:53926936-53926955 | None:intergenic | 30.0% | |
| ! | AAGCTATCTTGGATAGATTT+TGG | - | chr3.3:53925079-53925098 | MS.gene008576:intron | 30.0% |
| ! | ATCTAAGGCCAAAAATTACT+TGG | - | chr3.3:53926294-53926313 | MS.gene008576:CDS | 30.0% |
| ! | GCATAACTGTTGGTTAATAA+TGG | + | chr3.3:53927003-53927022 | None:intergenic | 30.0% |
| ! | TTGTTCTGCCAATTGAATTT+TGG | - | chr3.3:53925272-53925291 | MS.gene008576:intron | 30.0% |
| !! | CAAAATTTAGTTTGACACCA+TGG | - | chr3.3:53926893-53926912 | MS.gene008576:intron | 30.0% |
| !! | TTTTATAGTTTGTGCACTCA+AGG | - | chr3.3:53926070-53926089 | MS.gene008576:CDS | 30.0% |
| !!! | ATGCTCTCTATTTCCTTTTT+TGG | + | chr3.3:53926814-53926833 | None:intergenic | 30.0% |
| !!! | ATTTTAGTTCTCCAAGTTCA+AGG | - | chr3.3:53925922-53925941 | MS.gene008576:intron | 30.0% |
| !!! | GTTTTTGAGACTACTTTTGT+GGG | - | chr3.3:53924781-53924800 | MS.gene008576:intron | 30.0% |
| AAAGTGTAAGACCTTGAACT+TGG | + | chr3.3:53925936-53925955 | None:intergenic | 35.0% | |
| AATAGGATGAAATGACACCA+TGG | - | chr3.3:53926224-53926243 | MS.gene008576:intron | 35.0% | |
| AATGTTAAAGTGTGCAACAC+AGG | + | chr3.3:53925369-53925388 | None:intergenic | 35.0% | |
| AGTTCATTTGGTACATAGGA+AGG | + | chr3.3:53927025-53927044 | None:intergenic | 35.0% | |
| ATGAAGAATGCATCGAAACA+AGG | + | chr3.3:53925776-53925795 | None:intergenic | 35.0% | |
| CATATACACCAAGTCATTTC+TGG | - | chr3.3:53926831-53926850 | MS.gene008576:intron | 35.0% | |
| CTATTGGGAAAATGAGAAGT+TGG | + | chr3.3:53925815-53925834 | None:intergenic | 35.0% | |
| CTCCTACTCCAAAATTCAAT+TGG | + | chr3.3:53925283-53925302 | None:intergenic | 35.0% | |
| GACATATAATATGAGAGGGA+TGG | + | chr3.3:53927086-53927105 | None:intergenic | 35.0% | |
| GTAATTGCAAAGTTACACGA+TGG | - | chr3.3:53925492-53925511 | MS.gene008576:intron | 35.0% | |
| TATTATGGCAGAACAACTCT+TGG | + | chr3.3:53927274-53927293 | None:intergenic | 35.0% | |
| TCTCTCATTCTCATCAAACA+AGG | - | chr3.3:53924349-53924368 | MS.gene008576:intron | 35.0% | |
| TGAAGAATGCATCGAAACAA+GGG | + | chr3.3:53925775-53925794 | None:intergenic | 35.0% | |
| TTGTTTGATGAGAATGAGAG+AGG | + | chr3.3:53924350-53924369 | None:intergenic | 35.0% | |
| TTTCTTGAATTCGGATCATG+TGG | - | chr3.3:53925423-53925442 | MS.gene008576:intron | 35.0% | |
| ! | CTGTGATGTGTATTTTGTGT+AGG | - | chr3.3:53925671-53925690 | MS.gene008576:intron | 35.0% |
| !! | AGGGTCTTATTTGTCTGTTA+TGG | - | chr3.3:53925875-53925894 | MS.gene008576:intron | 35.0% |
| !! | GTGTAGGTTCTTATTGACTT+TGG | - | chr3.3:53925687-53925706 | MS.gene008576:intron | 35.0% |
| !! | TGATTAAGTTTGGCTCTGTT+TGG | - | chr3.3:53924929-53924948 | MS.gene008576:intron | 35.0% |
| !!! | CAATTGAATTTTGGAGTAGG+AGG | - | chr3.3:53925281-53925300 | MS.gene008576:intron | 35.0% |
| !!! | GGTTTTTGAGACTACTTTTG+TGG | - | chr3.3:53924780-53924799 | MS.gene008576:intron | 35.0% |
| !!! | TGCCAATTGAATTTTGGAGT+AGG | - | chr3.3:53925278-53925297 | MS.gene008576:intron | 35.0% |
| ACAATGAACAAGCTTGCAGA+CGG | - | chr3.3:53927388-53927407 | MS.gene008576:intron | 40.0% | |
| ACCACTGTTTCGATGATTTG+CGG | + | chr3.3:53927363-53927382 | None:intergenic | 40.0% | |
| AGCCTCTACACAAAAGTTGA+GGG | + | chr3.3:53925963-53925982 | None:intergenic | 40.0% | |
| ATCCACAGCATATAACACAG+GGG | + | chr3.3:53925346-53925365 | None:intergenic | 40.0% | |
| ATGGGACGCAATGAAACTTA+AGG | - | chr3.3:53926472-53926491 | MS.gene008576:CDS | 40.0% | |
| ATTGCAAAGTTACACGATGG+TGG | - | chr3.3:53925495-53925514 | MS.gene008576:intron | 40.0% | |
| CAAGTTGTGAAAATGTACGG+AGG | + | chr3.3:53927470-53927489 | None:intergenic | 40.0% | |
| GATAGGATCAAATGACACCA+TGG | + | chr3.3:53926913-53926932 | None:intergenic | 40.0% | |
| GATCCACAGCATATAACACA+GGG | + | chr3.3:53925347-53925366 | None:intergenic | 40.0% | |
| GGCAAGATTGCATCTCAAAT+TGG | - | chr3.3:53925465-53925484 | MS.gene008576:intron | 40.0% | |
| GGTGAGTTCATTCATCTCTT+AGG | - | chr3.3:53925578-53925597 | MS.gene008576:intron | 40.0% | |
| GTCAACTTAGCATCCAAAGT+CGG | + | chr3.3:53924853-53924872 | None:intergenic | 40.0% | |
| GTTTCGATGCATTCTTCATG+TGG | - | chr3.3:53925777-53925796 | MS.gene008576:intron | 40.0% | |
| TAGCCTCTACACAAAAGTTG+AGG | + | chr3.3:53925964-53925983 | None:intergenic | 40.0% | |
| TCTACACAAAAGTTGAGGGA+AGG | + | chr3.3:53925959-53925978 | None:intergenic | 40.0% | |
| TTGATTGTGGCGATGTTGTT+AGG | - | chr3.3:53924527-53924546 | MS.gene008576:intron | 40.0% | |
| ! | AAATCGACGGCTTTATCTTC+TGG | + | chr3.3:53925735-53925754 | None:intergenic | 40.0% |
| ! | ACATAGGAAGGCATAACTGT+TGG | + | chr3.3:53927013-53927032 | None:intergenic | 40.0% |
| ! | ATCTAAGGCCAGAAATGACT+TGG | + | chr3.3:53926842-53926861 | None:intergenic | 40.0% |
| ! | GCATTCTTCATGTGGTAATG+TGG | - | chr3.3:53925785-53925804 | MS.gene008576:intron | 40.0% |
| ! | TTCCCTCAACTTTTGTGTAG+AGG | - | chr3.3:53925958-53925977 | MS.gene008576:intron | 40.0% |
| ACCGCAAATCATCGAAACAG+TGG | - | chr3.3:53927359-53927378 | MS.gene008576:intron | 45.0% | |
| AGCTATCGCAAACAGTCTCA+CGG | - | chr3.3:53925147-53925166 | MS.gene008576:intron | 45.0% | |
| CAACTTGTAGTGCGACAAAG+AGG | - | chr3.3:53927483-53927502 | MS.gene008576:CDS | 45.0% | |
| CATGTGGCATCAATGAAGAG+CGG | - | chr3.3:53925439-53925458 | MS.gene008576:intron | 45.0% | |
| GAAGTACAGACATCCGACTT+TGG | - | chr3.3:53924837-53924856 | MS.gene008576:intron | 45.0% | |
| GACACTCAAGCGCTTAAATG+CGG | - | chr3.3:53924870-53924889 | MS.gene008576:intron | 45.0% | |
| GGATCCACAGCATATAACAC+AGG | + | chr3.3:53925348-53925367 | None:intergenic | 45.0% | |
| GTTGTTAAATAGCGGCACTG+TGG | - | chr3.3:53924623-53924642 | MS.gene008576:intron | 45.0% | |
| TACCCCTGTGTTATATGCTG+TGG | - | chr3.3:53925341-53925360 | MS.gene008576:intron | 45.0% | |
| TCAAGCGCTTAAATGCGGTA+CGG | - | chr3.3:53924875-53924894 | MS.gene008576:intron | 45.0% | |
| ! | CTGTTTCGATGATTTGCGGT+AGG | + | chr3.3:53927359-53927378 | None:intergenic | 45.0% |
| ! | GTCTGCAAGCTTGTTCATTG+TGG | + | chr3.3:53927389-53927408 | None:intergenic | 45.0% |
| !! | AGACTACTTTTGTGGGACGA+AGG | - | chr3.3:53924788-53924807 | MS.gene008576:intron | 45.0% |
| AAGAGGACGAAAGAGGACCA+TGG | - | chr3.3:53927500-53927519 | MS.gene008576:CDS | 50.0% | |
| GCTATCGCAAACAGTCTCAC+GGG | - | chr3.3:53925148-53925167 | MS.gene008576:intron | 50.0% | |
| GGCATCAATGAAGAGCGGTT+AGG | - | chr3.3:53925444-53925463 | MS.gene008576:intron | 50.0% | |
| TGCGACAAAGAGGACGAAAG+AGG | - | chr3.3:53927493-53927512 | MS.gene008576:CDS | 50.0% | |
| !! | CACGATGGTGGTCTTGTTCA+TGG | - | chr3.3:53925507-53925526 | MS.gene008576:intron | 50.0% |
| !!! | GAATTTTGGAGTAGGAGGCG+AGG | - | chr3.3:53925286-53925305 | MS.gene008576:intron | 50.0% |
| AACCAAGGCAAGGCGACTTG+GGG | - | chr3.3:53925314-53925333 | MS.gene008576:intron | 55.0% | |
| ACAACCAAGGCAAGGCGACT+TGG | - | chr3.3:53925312-53925331 | MS.gene008576:intron | 55.0% | |
| CAACCAAGGCAAGGCGACTT+GGG | - | chr3.3:53925313-53925332 | MS.gene008576:intron | 55.0% | |
| GGACGAAAGAGGACCATGGT+TGG | - | chr3.3:53927504-53927523 | MS.gene008576:CDS | 55.0% | |
| AACCCCAAGTCGCCTTGCCT+TGG | + | chr3.3:53925319-53925338 | None:intergenic | 60.0% | |
| CGAGGTGCACAACCAAGGCA+AGG | - | chr3.3:53925304-53925323 | MS.gene008576:intron | 60.0% | |
| GGAGGCGAGGTGCACAACCA+AGG | - | chr3.3:53925299-53925318 | MS.gene008576:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 53924319 | 53927530 | 53924319 | ID=MS.gene008576 |
| chr3.3 | mRNA | 53924319 | 53927530 | 53924319 | ID=MS.gene008576.t1;Parent=MS.gene008576 |
| chr3.3 | exon | 53927468 | 53927530 | 53927468 | ID=MS.gene008576.t1.exon1;Parent=MS.gene008576.t1 |
| chr3.3 | CDS | 53927468 | 53927530 | 53927468 | ID=cds.MS.gene008576.t1;Parent=MS.gene008576.t1 |
| chr3.3 | exon | 53926958 | 53927071 | 53926958 | ID=MS.gene008576.t1.exon2;Parent=MS.gene008576.t1 |
| chr3.3 | CDS | 53926958 | 53927071 | 53926958 | ID=cds.MS.gene008576.t1;Parent=MS.gene008576.t1 |
| chr3.3 | exon | 53926271 | 53926549 | 53926271 | ID=MS.gene008576.t1.exon3;Parent=MS.gene008576.t1 |
| chr3.3 | CDS | 53926271 | 53926549 | 53926271 | ID=cds.MS.gene008576.t1;Parent=MS.gene008576.t1 |
| chr3.3 | exon | 53926043 | 53926156 | 53926043 | ID=MS.gene008576.t1.exon4;Parent=MS.gene008576.t1 |
| chr3.3 | CDS | 53926043 | 53926156 | 53926043 | ID=cds.MS.gene008576.t1;Parent=MS.gene008576.t1 |
| chr3.3 | exon | 53924440 | 53924512 | 53924440 | ID=MS.gene008576.t1.exon5;Parent=MS.gene008576.t1 |
| chr3.3 | CDS | 53924440 | 53924512 | 53924440 | ID=cds.MS.gene008576.t1;Parent=MS.gene008576.t1 |
| chr3.3 | exon | 53924319 | 53924356 | 53924319 | ID=MS.gene008576.t1.exon6;Parent=MS.gene008576.t1 |
| chr3.3 | CDS | 53924319 | 53924356 | 53924319 | ID=cds.MS.gene008576.t1;Parent=MS.gene008576.t1 |
| Gene Sequence |
| Protein sequence |
