Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70303.t1 | XP_003630123.2 | 98.9 | 1010 | 11 | 0 | 1 | 1010 | 1 | 1010 | 0.00E+00 | 1975.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70303.t1 | Q9XIK4 | 71.8 | 1021 | 277 | 6 | 1 | 1015 | 1 | 1016 | 0.0e+00 | 1436.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70303.t1 | G7LBB9 | 98.9 | 1010 | 11 | 0 | 1 | 1010 | 1 | 1010 | 0.0e+00 | 1975.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050535 | MS.gene70303 | 0.803473 | 3.43E-49 | -1.69E-46 |
| MS.gene058030 | MS.gene70303 | 0.859529 | 3.88E-63 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70303.t1 | MTR_8g092060 | 98.931 | 1029 | 11 | 0 | 1 | 1029 | 1 | 1029 | 0.0 | 2112 |
| MS.gene70303.t1 | MTR_2g028030 | 75.049 | 1030 | 228 | 9 | 1 | 1026 | 1 | 1005 | 0.0 | 1553 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70303.t1 | AT1G10490 | 71.609 | 1032 | 282 | 6 | 1 | 1026 | 1 | 1027 | 0.0 | 1468 |
| MS.gene70303.t1 | AT1G10490 | 71.609 | 1032 | 282 | 6 | 1 | 1026 | 1 | 1027 | 0.0 | 1468 |
| MS.gene70303.t1 | AT3G57940 | 70.158 | 1012 | 287 | 6 | 1 | 1008 | 1 | 1001 | 0.0 | 1410 |
| MS.gene70303.t1 | AT3G57940 | 69.862 | 1012 | 285 | 7 | 1 | 1008 | 1 | 996 | 0.0 | 1395 |
Find 220 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTTTCCTTGATGCAATTT+TGG | 0.109454 | 4.1:+9365309 | MS.gene70303:CDS |
| TGGTATAACCTGCTAATATT+AGG | 0.153603 | 4.1:-9367759 | None:intergenic |
| GCTTTCGCAAGTTGAATTAT+TGG | 0.181367 | 4.1:+9366700 | MS.gene70303:CDS |
| TTCCTGTCTTCCACTGTTAA+TGG | 0.209425 | 4.1:+9366788 | MS.gene70303:CDS |
| CATCATTATTCAAGGGTTTC+AGG | 0.210462 | 4.1:-9371539 | None:intergenic |
| CCTTACAACAGTAGCATTCT+TGG | 0.213127 | 4.1:-9366476 | None:intergenic |
| CCGCGGACCTCTTTCGCTTT+TGG | 0.229297 | 4.1:+9371340 | MS.gene70303:CDS |
| GTCTTTGCTTGGCCCATATC+TGG | 0.233387 | 4.1:+9366763 | MS.gene70303:CDS |
| ATGAACCCACCCTGGTAAAA+TGG | 0.256257 | 4.1:-9371603 | None:intergenic |
| AATGACGACCCAGGGTCTTT+TGG | 0.257695 | 4.1:+9363444 | MS.gene70303:CDS |
| AATATTGTCTCTATTTATAA+AGG | 0.271442 | 4.1:+9373311 | MS.gene70303:CDS |
| CGATCCATGTTTGTCATTAT+CGG | 0.274182 | 4.1:+9362902 | MS.gene70303:CDS |
| AAGCATTCTGAAAGAGTTCT+TGG | 0.279878 | 4.1:+9363532 | MS.gene70303:CDS |
| GCAAAGATTTGCTAAACTTC+TGG | 0.287441 | 4.1:+9371712 | MS.gene70303:CDS |
| GGTATAACCTGCTAATATTA+GGG | 0.307074 | 4.1:-9367758 | None:intergenic |
| CTTCGGGATGTGTGTTCTTC+AGG | 0.309009 | 4.1:+9363561 | MS.gene70303:CDS |
| CATGACCACGCATGCCTTAC+AGG | 0.309529 | 4.1:-9364046 | None:intergenic |
| ATCAGAACTCTCATTGAAAA+TGG | 0.315497 | 4.1:+9362863 | MS.gene70303:CDS |
| CAGCCATAAATCAAGTAAAA+AGG | 0.320830 | 4.1:+9374031 | MS.gene70303:CDS |
| GACCTTATGTGAGATGAAAT+TGG | 0.324806 | 4.1:-9364090 | None:intergenic |
| GCATACCGCTGGAGCAATTC+AGG | 0.326482 | 4.1:-9373849 | None:intergenic |
| TTGTCAGCAGTTGTCTTGAT+AGG | 0.327701 | 4.1:-9372099 | None:intergenic |
| CAAATGAGGAAGATCTGTTC+TGG | 0.328217 | 4.1:-9371253 | None:intergenic |
| GGGACTATCAGAAGCTTATC+AGG | 0.328308 | 4.1:+9365088 | MS.gene70303:CDS |
| TTCTGTTTAACAGGGACAAA+TGG | 0.330082 | 4.1:+9373272 | MS.gene70303:intron |
| TCCTGTCTTCCACTGTTAAT+GGG | 0.334912 | 4.1:+9366789 | MS.gene70303:CDS |
| GCTCTTGGTTTATCAATTGC+TGG | 0.336205 | 4.1:+9365391 | MS.gene70303:CDS |
| TTGTTCGCTGCTCGTGGCCG+TGG | 0.342740 | 4.1:+9365358 | MS.gene70303:CDS |
| CACCACTTATTTGTGCTACT+TGG | 0.343869 | 4.1:+9368116 | MS.gene70303:CDS |
| ATAGTTCTTGCTAGTAGATT+AGG | 0.345177 | 4.1:-9363701 | None:intergenic |
| GAGTTCTTGGCAACACCTTC+GGG | 0.345741 | 4.1:+9363545 | MS.gene70303:CDS |
| AAACTTAAAGAGGAACTAAA+TGG | 0.347516 | 4.1:+9365119 | MS.gene70303:CDS |
| GCCATCAATTGCAGATCATT+TGG | 0.348357 | 4.1:-9368080 | None:intergenic |
| GACAATGCCTTGCAAAATAC+TGG | 0.353277 | 4.1:+9373897 | MS.gene70303:CDS |
| CCGTGCTCTTAGCAGACATT+TGG | 0.355236 | 4.1:-9367055 | None:intergenic |
| CATTATCTCGGCGTCTCCTT+TGG | 0.356220 | 4.1:+9371312 | MS.gene70303:CDS |
| TTCCGTATCAGTGGTCCAAC+AGG | 0.357971 | 4.1:-9365149 | None:intergenic |
| TATTCACAGGTTTGCCTTGA+GGG | 0.360429 | 4.1:+9368461 | MS.gene70303:intron |
| GAAGACAGGAAGACCAGATA+TGG | 0.361242 | 4.1:-9366776 | None:intergenic |
| GATGACCATGGCTCAAACTT+TGG | 0.365532 | 4.1:-9368508 | None:intergenic |
| AGAGTTCTTGGCAACACCTT+CGG | 0.367420 | 4.1:+9363544 | MS.gene70303:CDS |
| GGCTTCCACTTTCCGTGGCA+TGG | 0.373750 | 4.1:+9371733 | MS.gene70303:CDS |
| GCGTTAAGCCAGCTTTCAAT+AGG | 0.380422 | 4.1:-9367705 | None:intergenic |
| TCCAAATGATCTGCAATTGA+TGG | 0.389508 | 4.1:+9368079 | MS.gene70303:CDS |
| AATAAAGCTTAACTGGAATC+TGG | 0.390038 | 4.1:-9371395 | None:intergenic |
| AACAAGGATACCTCTTCAAC+AGG | 0.390312 | 4.1:-9364126 | None:intergenic |
| CCGAGATAATGGAGCTTCTC+CGG | 0.393175 | 4.1:-9371300 | None:intergenic |
| TTCAATTTCATCATTATTCA+AGG | 0.394125 | 4.1:-9371547 | None:intergenic |
| TATAGATCACACTCACTTGC+TGG | 0.394267 | 4.1:-9367865 | None:intergenic |
| TCTACATGGTCTTGCATTCA+AGG | 0.399145 | 4.1:+9373356 | MS.gene70303:CDS |
| CAATCTTGCTGACTTTCATC+TGG | 0.401834 | 4.1:+9372188 | MS.gene70303:CDS |
| CAAAGGAGACGCCGAGATAA+TGG | 0.404698 | 4.1:-9371311 | None:intergenic |
| CGTGGGAAATCAGCTGCTCT+TGG | 0.405723 | 4.1:+9365376 | MS.gene70303:CDS |
| TCTGTTTAACAGGGACAAAT+GGG | 0.420355 | 4.1:+9373273 | MS.gene70303:intron |
| GTGATCTATACTATGTCAAT+CGG | 0.421633 | 4.1:+9367878 | MS.gene70303:CDS |
| CTGCACAGGTCTGCAGAATC+AGG | 0.422621 | 4.1:+9372854 | MS.gene70303:CDS |
| TGGATGACACACAAAATATC+AGG | 0.423019 | 4.1:-9368250 | None:intergenic |
| TGAGCATGTGATAATGTAAC+TGG | 0.428130 | 4.1:-9372816 | None:intergenic |
| TACCAATTTCATCTCACATA+AGG | 0.428327 | 4.1:+9364088 | MS.gene70303:CDS |
| GATACCTCTTCAACAGGAAC+TGG | 0.435352 | 4.1:-9364120 | None:intergenic |
| TTGAAAATGGCGTCAAATCA+AGG | 0.436134 | 4.1:+9362876 | MS.gene70303:CDS |
| GCATCACAGACAGACCATTC+AGG | 0.441433 | 4.1:+9366513 | MS.gene70303:CDS |
| GAATCCCACTCTCAGGCTAC+AGG | 0.446778 | 4.1:+9363988 | MS.gene70303:CDS |
| CGGTGACAAATCCCGTGATC+AGG | 0.453225 | 4.1:+9362922 | MS.gene70303:CDS |
| CATCACCATCGTGTACAAAC+TGG | 0.454198 | 4.1:-9363783 | None:intergenic |
| GTTGATGAAACAAATCAGTT+CGG | 0.459835 | 4.1:+9371570 | MS.gene70303:CDS |
| GAAAATGCATCGGCTTTCTC+AGG | 0.464462 | 4.1:-9363469 | None:intergenic |
| AAATTTGCTCCTTTCTACAT+TGG | 0.466347 | 4.1:+9371372 | MS.gene70303:CDS |
| GCTTCTTCCAAAAGCGAAAG+AGG | 0.467655 | 4.1:-9371347 | None:intergenic |
| CAGCGGTATGCCTTTGAAGA+TGG | 0.471481 | 4.1:+9373861 | MS.gene70303:CDS |
| AGGAAAAGCTTGAACTAAGC+AGG | 0.472967 | 4.1:+9363277 | MS.gene70303:CDS |
| TGTATTCTTACAGCGAATGA+TGG | 0.474059 | 4.1:+9368025 | MS.gene70303:intron |
| CTGTAAGGCATGCGTGGTCA+TGG | 0.476362 | 4.1:+9364047 | MS.gene70303:CDS |
| AGCACAAATAAGTGGTGTGC+TGG | 0.479388 | 4.1:-9368110 | None:intergenic |
| CTATTCACAGGTTTGCCTTG+AGG | 0.480472 | 4.1:+9368460 | MS.gene70303:intron |
| ATTGCTGGTGCTATTGCTGC+CGG | 0.480813 | 4.1:+9365406 | MS.gene70303:CDS |
| ATGCAAAGTTATGAAGGAAC+TGG | 0.481979 | 4.1:+9366987 | MS.gene70303:intron |
| CCAAGAATGCTACTGTTGTA+AGG | 0.489834 | 4.1:+9366476 | MS.gene70303:CDS |
| AAATGAGGAAGATCTGTTCT+GGG | 0.490856 | 4.1:-9371252 | None:intergenic |
| CCAACAGTGAAGTCTTTGCT+TGG | 0.491005 | 4.1:+9366752 | MS.gene70303:CDS |
| CGAGATAATGGAGCTTCTCC+GGG | 0.491889 | 4.1:-9371299 | None:intergenic |
| TGCTAGTACATCTGCGTGAA+AGG | 0.492280 | 4.1:+9371274 | MS.gene70303:CDS |
| CTTTGTTACTGCACCCAGTC+CGG | 0.496279 | 4.1:+9365529 | MS.gene70303:CDS |
| TTGTTTGAGTTTATATGCAA+AGG | 0.497050 | 4.1:+9365566 | MS.gene70303:CDS |
| ACTATCAATTGCCTCCTGTA+AGG | 0.497278 | 4.1:+9364032 | MS.gene70303:CDS |
| TGTTCGCTGCTCGTGGCCGT+GGG | 0.501663 | 4.1:+9365359 | MS.gene70303:CDS |
| TGTTTGAGTTTATATGCAAA+GGG | 0.501745 | 4.1:+9365567 | MS.gene70303:CDS |
| ACCCATTAACAGTGGAAGAC+AGG | 0.504081 | 4.1:-9366790 | None:intergenic |
| GCTAAGAGCACGGAGGGTGC+AGG | 0.504530 | 4.1:+9367065 | MS.gene70303:CDS |
| TGATTCTTCGATTCATCCAC+CGG | 0.505238 | 4.1:-9368223 | None:intergenic |
| CTGGGGATCCTATTGAAAGC+TGG | 0.505620 | 4.1:+9367697 | MS.gene70303:CDS |
| TTTCATTGTTTATGATAGGC+GGG | 0.509198 | 4.1:+9363488 | MS.gene70303:CDS |
| CGCAGATGTACTAGCAAATG+AGG | 0.511263 | 4.1:-9371267 | None:intergenic |
| AGCGAAAGAGGTCCGCGGTT+AGG | 0.512543 | 4.1:-9371335 | None:intergenic |
| GCTTGTGTGTTACTCTGCAC+AGG | 0.520610 | 4.1:+9372840 | MS.gene70303:CDS |
| CTCAGGATCCAAAAGACCCT+GGG | 0.520939 | 4.1:-9363452 | None:intergenic |
| TCCCTGTTGGACCACTGATA+CGG | 0.521720 | 4.1:+9365147 | MS.gene70303:CDS |
| CCGGAGAAGCTCCATTATCT+CGG | 0.521760 | 4.1:+9371300 | MS.gene70303:CDS |
| TTGTCAGTATAAAATCGAAC+CGG | 0.524708 | 4.1:+9373943 | MS.gene70303:CDS |
| GTATTCCATGCCACGGAAAG+TGG | 0.525307 | 4.1:-9371738 | None:intergenic |
| TCGAACTGAATCCCACTCTC+AGG | 0.529910 | 4.1:+9363981 | MS.gene70303:CDS |
| TACATCTTTCAGCCGTGGCA+TGG | 0.532959 | 4.1:-9373391 | None:intergenic |
| TGGCAATGAACTTACCTGAA+TGG | 0.533576 | 4.1:-9366527 | None:intergenic |
| AGGGACAAATGGGGTTGGAA+AGG | 0.535630 | 4.1:+9373283 | MS.gene70303:intron |
| GGAACCTCTTAGTGTTTCTG+TGG | 0.536334 | 4.1:+9373634 | MS.gene70303:CDS |
| GGAATCTGGCCAATGTAGAA+AGG | 0.538089 | 4.1:-9371381 | None:intergenic |
| ATGCCATCCCTAATATTAGC+AGG | 0.538179 | 4.1:+9367751 | MS.gene70303:CDS |
| CTAAATGGAGATTTCCCTGT+TGG | 0.538752 | 4.1:+9365134 | MS.gene70303:CDS |
| TCTTGTCCAAAATTGCATCA+AGG | 0.540070 | 4.1:-9365315 | None:intergenic |
| AGTTACAGAAGCTGCAGAGA+AGG | 0.540274 | 4.1:+9370324 | MS.gene70303:CDS |
| ATAGAGACAGTGGAAGGAGG+AGG | 0.542491 | 4.1:+9363722 | MS.gene70303:CDS |
| CACACATCCTAGTGCAATGA+GGG | 0.543166 | 4.1:+9368625 | MS.gene70303:CDS |
| TCAGGACATTTCACACATTG+AGG | 0.543421 | 4.1:+9372872 | MS.gene70303:CDS |
| TAAACCAGTTCCTGTTGAAG+AGG | 0.545632 | 4.1:+9364116 | MS.gene70303:CDS |
| ACTGTCTGCAGTTATTATGA+AGG | 0.547316 | 4.1:+9370241 | MS.gene70303:intron |
| GCTTCTGTAACTGTAATTTG+TGG | 0.547860 | 4.1:-9370313 | None:intergenic |
| GTTTGATGTACTTGAATACA+AGG | 0.548311 | 4.1:+9365589 | MS.gene70303:CDS |
| TCAATTTCATCATTATTCAA+GGG | 0.550319 | 4.1:-9371546 | None:intergenic |
| TGGATGAAGACCTCAACGAT+GGG | 0.551646 | 4.1:+9373654 | MS.gene70303:CDS |
| TGAGAATGATGTTGACGATA+AGG | 0.553110 | 4.1:+9370282 | MS.gene70303:CDS |
| TTGCTGGTGCTATTGCTGCC+GGG | 0.554680 | 4.1:+9365407 | MS.gene70303:CDS |
| CTTCTGGCTTCCACTTTCCG+TGG | 0.555143 | 4.1:+9371728 | MS.gene70303:CDS |
| ACGGCCACGAGCAGCGAACA+AGG | 0.556001 | 4.1:-9365356 | None:intergenic |
| TGATCTATACTATGTCAATC+GGG | 0.556230 | 4.1:+9367879 | MS.gene70303:CDS |
| CAGCTTTCAATAGGATCCCC+AGG | 0.557416 | 4.1:-9367696 | None:intergenic |
| TCTCAGGATCCAAAAGACCC+TGG | 0.561670 | 4.1:-9363453 | None:intergenic |
| TACCAAGTAGCACAAATAAG+TGG | 0.562485 | 4.1:-9368118 | None:intergenic |
| AAAGACTTCACTGTTGGCAG+TGG | 0.564718 | 4.1:-9366746 | None:intergenic |
| TCTTCATTATATGCTTAGCA+AGG | 0.565411 | 4.1:+9363215 | MS.gene70303:CDS |
| CATCTTCAAAGGCATACCGC+TGG | 0.566759 | 4.1:-9373860 | None:intergenic |
| TTCATTGTTTATGATAGGCG+GGG | 0.569131 | 4.1:+9363489 | MS.gene70303:CDS |
| CCAAGCAAAGACTTCACTGT+TGG | 0.571135 | 4.1:-9366752 | None:intergenic |
| GCTAGATTCTCCATCTTCAA+AGG | 0.571573 | 4.1:-9373871 | None:intergenic |
| TACTGTATAGGACGATATGA+AGG | 0.574051 | 4.1:+9373803 | MS.gene70303:intron |
| TTAACAGGGACAAATGGGGT+TGG | 0.574911 | 4.1:+9373278 | MS.gene70303:intron |
| GAGGTCCGCGGTTAGGCCAA+AGG | 0.575632 | 4.1:-9371328 | None:intergenic |
| GAATCCATCAGATATGCTCC+TGG | 0.578441 | 4.1:+9367678 | MS.gene70303:CDS |
| AAGTACAGGTGCGAAAGTGC+AGG | 0.580964 | 4.1:-9372780 | None:intergenic |
| TCCAGACAAAATGAGGAAGA+AGG | 0.581483 | 4.1:+9362829 | None:intergenic |
| CATAAACAATGAAAATGCAT+CGG | 0.584102 | 4.1:-9363479 | None:intergenic |
| TATACTGACAAGACCACCTG+TGG | 0.585384 | 4.1:-9373931 | None:intergenic |
| GCAAGGCTCAGATCAAATCA+AGG | 0.585461 | 4.1:+9363232 | MS.gene70303:CDS |
| ATTCACAGGTTTGCCTTGAG+GGG | 0.585666 | 4.1:+9368462 | MS.gene70303:intron |
| AATCCATCAGATATGCTCCT+GGG | 0.586271 | 4.1:+9367679 | MS.gene70303:CDS |
| GAAGTGTTCCACGTTGGACC+AGG | 0.586370 | 4.1:+9365169 | MS.gene70303:CDS |
| GAAGTTACCCTCATTGCACT+AGG | 0.587370 | 4.1:-9368632 | None:intergenic |
| GTTGCCTTGTTCGCTGCTCG+TGG | 0.587390 | 4.1:+9365352 | MS.gene70303:CDS |
| TTAAAGTCTGAAAACGAGCA+TGG | 0.587411 | 4.1:+9373969 | MS.gene70303:CDS |
| ACATCTGCGTGAAAGGCGCC+CGG | 0.587670 | 4.1:+9371281 | MS.gene70303:CDS |
| CATGGTATTTGATCTCCACA+CGG | 0.588349 | 4.1:-9368533 | None:intergenic |
| AACGCCCTGTAGCCTGAGAG+TGG | 0.588671 | 4.1:-9363993 | None:intergenic |
| AAGACAGGAAGACCAGATAT+GGG | 0.589306 | 4.1:-9366775 | None:intergenic |
| AGCAAGAACTATAGAGACAG+TGG | 0.589349 | 4.1:+9363712 | MS.gene70303:CDS |
| CGATGGGGCTAAACAAGTTG+AGG | 0.590660 | 4.1:+9373670 | MS.gene70303:CDS |
| ACCTGATAGAATAACGTGAC+TGG | 0.590808 | 4.1:+9371498 | MS.gene70303:intron |
| TGCCTCCTGTAAGGCATGCG+TGG | 0.591653 | 4.1:+9364041 | MS.gene70303:CDS |
| ATAAAACGATACCTGATCAC+GGG | 0.592447 | 4.1:-9362933 | None:intergenic |
| ATCCCCAGGAGCATATCTGA+TGG | 0.593961 | 4.1:-9367682 | None:intergenic |
| TAATTCACTATCCTTGTGGT+AGG | 0.594044 | 4.1:-9367914 | None:intergenic |
| TTGTAACACCATAAAACAGT+TGG | 0.597418 | 4.1:-9363255 | None:intergenic |
| ACTATAGAGACAGTGGAAGG+AGG | 0.598245 | 4.1:+9363719 | MS.gene70303:CDS |
| AACTGCTCACAAAATTTCCA+TGG | 0.599225 | 4.1:-9368551 | None:intergenic |
| AAAATAATTCACTATCCTTG+TGG | 0.600381 | 4.1:-9367918 | None:intergenic |
| ATGTCTGCTAAGAGCACGGA+GGG | 0.601997 | 4.1:+9367059 | MS.gene70303:CDS |
| AAATTCTACAAATATCTACA+TGG | 0.602639 | 4.1:+9373342 | MS.gene70303:CDS |
| TCATTGTTTATGATAGGCGG+GGG | 0.603523 | 4.1:+9363490 | MS.gene70303:CDS |
| TATAAAACGATACCTGATCA+CGG | 0.604633 | 4.1:-9362934 | None:intergenic |
| GACGAGATATCTGCCCCTCA+AGG | 0.606609 | 4.1:-9368475 | None:intergenic |
| TAACCTGCTAATATTAGGGA+TGG | 0.607113 | 4.1:-9367754 | None:intergenic |
| GGAGCTGAAGAAACTTAAAG+AGG | 0.607451 | 4.1:+9365109 | MS.gene70303:CDS |
| TCATCCACAGAAACACTAAG+AGG | 0.607502 | 4.1:-9373638 | None:intergenic |
| GACTGGCGAGCATTCATGCA+TGG | 0.609058 | 4.1:+9371515 | MS.gene70303:CDS |
| TAGAGACAGTGGAAGGAGGA+GGG | 0.610550 | 4.1:+9363723 | MS.gene70303:CDS |
| CCAAATGTCTGCTAAGAGCA+CGG | 0.613472 | 4.1:+9367055 | MS.gene70303:CDS |
| TAACTTACATCTTTCAGCCG+TGG | 0.614000 | 4.1:-9373396 | None:intergenic |
| CCACACATCCTAGTGCAATG+AGG | 0.617308 | 4.1:+9368624 | MS.gene70303:CDS |
| TGGAATACAAGCTTGCTATG+AGG | 0.617987 | 4.1:+9371753 | MS.gene70303:CDS |
| ATTGATGCTGCAGGACTCAG+AGG | 0.619238 | 4.1:+9365067 | MS.gene70303:intron |
| AATCCCACTCTCAGGCTACA+GGG | 0.620518 | 4.1:+9363989 | MS.gene70303:CDS |
| ATGCGAGCTCCTGAAAGTGA+AGG | 0.624310 | 4.1:-9368590 | None:intergenic |
| CAGTTTGTACACGATGGTGA+TGG | 0.626116 | 4.1:+9363784 | MS.gene70303:CDS |
| CAAGCTTGTATTCCATGCCA+CGG | 0.626773 | 4.1:-9371745 | None:intergenic |
| AGACAAAATGAGGAAGAAGG+TGG | 0.627687 | 4.1:+9362832 | None:intergenic |
| GTGGATGAAGACCTCAACGA+TGG | 0.630682 | 4.1:+9373653 | MS.gene70303:CDS |
| GCTATCCAAAGTTTGAGCCA+TGG | 0.630986 | 4.1:+9368503 | MS.gene70303:CDS |
| CCTCATTGCACTAGGATGTG+TGG | 0.631104 | 4.1:-9368624 | None:intergenic |
| TATTTGTATGACAGGACCGG+TGG | 0.632393 | 4.1:+9368207 | MS.gene70303:intron |
| GTGGAACACTTCCGTATCAG+TGG | 0.634428 | 4.1:-9365158 | None:intergenic |
| TTGATGCTGCAGGACTCAGA+GGG | 0.636185 | 4.1:+9365068 | MS.gene70303:intron |
| ACGCCCTGTAGCCTGAGAGT+GGG | 0.637356 | 4.1:-9363992 | None:intergenic |
| CTTGTTTAGCCCCATCGTTG+AGG | 0.638898 | 4.1:-9373664 | None:intergenic |
| CTGTTTAACAGGGACAAATG+GGG | 0.641129 | 4.1:+9373274 | MS.gene70303:intron |
| ATTCAGTTCGAAATCTGTCG+TGG | 0.643656 | 4.1:-9363969 | None:intergenic |
| TTTGCATATAAACTCAAACA+AGG | 0.644235 | 4.1:-9365564 | None:intergenic |
| CTCCACACGGTTGATGACCA+TGG | 0.647676 | 4.1:-9368520 | None:intergenic |
| AGATCGAATCAACCATGCCA+CGG | 0.650410 | 4.1:+9373379 | MS.gene70303:CDS |
| TCACTCCTGAATTGCTCCAG+CGG | 0.651035 | 4.1:+9373844 | MS.gene70303:CDS |
| CAAGAGCAGCTGATTTCCCA+CGG | 0.651139 | 4.1:-9365375 | None:intergenic |
| AGAACTATAGAGACAGTGGA+AGG | 0.654646 | 4.1:+9363716 | MS.gene70303:CDS |
| GTCACCGATAATGACAAACA+TGG | 0.659550 | 4.1:-9362906 | None:intergenic |
| TCTAGTCGCTTCATATCATG+TGG | 0.661842 | 4.1:-9372153 | None:intergenic |
| CGTGTGGAGATCAAATACCA+TGG | 0.662978 | 4.1:+9368534 | MS.gene70303:CDS |
| TCCGTATCAGTGGTCCAACA+GGG | 0.663742 | 4.1:-9365148 | None:intergenic |
| ATCCATCAGATATGCTCCTG+GGG | 0.663879 | 4.1:+9367680 | MS.gene70303:CDS |
| ACATGATATGAAGCGACTAG+AGG | 0.666290 | 4.1:+9372155 | MS.gene70303:CDS |
| AATGCCTTGCAAAATACTGG+TGG | 0.667743 | 4.1:+9373900 | MS.gene70303:CDS |
| CTGAAGAACACACATCCCGA+AGG | 0.674615 | 4.1:-9363560 | None:intergenic |
| CGTCTCCTTTGGCCTAACCG+CGG | 0.681047 | 4.1:+9371323 | MS.gene70303:CDS |
| AGCCATGGTCATCAACCGTG+TGG | 0.683999 | 4.1:+9368518 | MS.gene70303:CDS |
| AGATCACACTCACTTGCTGG+AGG | 0.685877 | 4.1:-9367862 | None:intergenic |
| ATACTGACAAGACCACCTGT+GGG | 0.694097 | 4.1:-9373930 | None:intergenic |
| GCTAACCAGTTTGTACACGA+TGG | 0.697246 | 4.1:+9363778 | MS.gene70303:CDS |
| GATACGGAAGTGTTCCACGT+TGG | 0.701379 | 4.1:+9365163 | MS.gene70303:CDS |
| GGATGAAGACCTCAACGATG+GGG | 0.701949 | 4.1:+9373655 | MS.gene70303:CDS |
| TAATCCTACCTGGTCCAACG+TGG | 0.704729 | 4.1:-9365177 | None:intergenic |
| CCAGTCATACCCATTAACAG+TGG | 0.707802 | 4.1:-9366798 | None:intergenic |
| GACCACGCATGCCTTACAGG+AGG | 0.710844 | 4.1:-9364043 | None:intergenic |
| CCAAAAGCGAAAGAGGTCCG+CGG | 0.727190 | 4.1:-9371340 | None:intergenic |
| AAGTCTGAAAACGAGCATGG+AGG | 0.737070 | 4.1:+9373972 | MS.gene70303:CDS |
| AATGTCTGCTAAGAGCACGG+AGG | 0.777641 | 4.1:+9367058 | MS.gene70303:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 9362839 | 9374070 | 9362839 | ID=MS.gene70303 |
| chr4.1 | mRNA | 9362839 | 9374070 | 9362839 | ID=MS.gene70303.t1;Parent=MS.gene70303 |
| chr4.1 | exon | 9362839 | 9362943 | 9362839 | ID=MS.gene70303.t1.exon1;Parent=MS.gene70303.t1 |
| chr4.1 | CDS | 9362839 | 9362943 | 9362839 | ID=cds.MS.gene70303.t1;Parent=MS.gene70303.t1 |
| chr4.1 | exon | 9363207 | 9363298 | 9363207 | ID=MS.gene70303.t1.exon2;Parent=MS.gene70303.t1 |
| chr4.1 | CDS | 9363207 | 9363298 | 9363207 | ID=cds.MS.gene70303.t1;Parent=MS.gene70303.t1 |
| chr4.1 | exon | 9363411 | 9363582 | 9363411 | ID=MS.gene70303.t1.exon3;Parent=MS.gene70303.t1 |
| chr4.1 | CDS | 9363411 | 9363582 | 9363411 | ID=cds.MS.gene70303.t1;Parent=MS.gene70303.t1 |
| chr4.1 | exon | 9363683 | 9363805 | 9363683 | ID=MS.gene70303.t1.exon4;Parent=MS.gene70303.t1 |
| chr4.1 | CDS | 9363683 | 9363805 | 9363683 | ID=cds.MS.gene70303.t1;Parent=MS.gene70303.t1 |
| chr4.1 | exon | 9363964 | 9364137 | 9363964 | ID=MS.gene70303.t1.exon5;Parent=MS.gene70303.t1 |
| chr4.1 | CDS | 9363964 | 9364137 | 9363964 | ID=cds.MS.gene70303.t1;Parent=MS.gene70303.t1 |
| chr4.1 | exon | 9365080 | 9365190 | 9365080 | ID=MS.gene70303.t1.exon6;Parent=MS.gene70303.t1 |
| chr4.1 | CDS | 9365080 | 9365190 | 9365080 | ID=cds.MS.gene70303.t1;Parent=MS.gene70303.t1 |
| chr4.1 | exon | 9365295 | 9365428 | 9365295 | ID=MS.gene70303.t1.exon7;Parent=MS.gene70303.t1 |
| chr4.1 | CDS | 9365295 | 9365428 | 9365295 | ID=cds.MS.gene70303.t1;Parent=MS.gene70303.t1 |
| chr4.1 | exon | 9365517 | 9365610 | 9365517 | ID=MS.gene70303.t1.exon8;Parent=MS.gene70303.t1 |
| chr4.1 | CDS | 9365517 | 9365610 | 9365517 | ID=cds.MS.gene70303.t1;Parent=MS.gene70303.t1 |
| chr4.1 | exon | 9366439 | 9366534 | 9366439 | ID=MS.gene70303.t1.exon9;Parent=MS.gene70303.t1 |
| chr4.1 | CDS | 9366439 | 9366534 | 9366439 | ID=cds.MS.gene70303.t1;Parent=MS.gene70303.t1 |
| chr4.1 | exon | 9366674 | 9366810 | 9366674 | ID=MS.gene70303.t1.exon10;Parent=MS.gene70303.t1 |
| chr4.1 | CDS | 9366674 | 9366810 | 9366674 | ID=cds.MS.gene70303.t1;Parent=MS.gene70303.t1 |
| chr4.1 | exon | 9366995 | 9367086 | 9366995 | ID=MS.gene70303.t1.exon11;Parent=MS.gene70303.t1 |
| chr4.1 | CDS | 9366995 | 9367086 | 9366995 | ID=cds.MS.gene70303.t1;Parent=MS.gene70303.t1 |
| chr4.1 | exon | 9367649 | 9367772 | 9367649 | ID=MS.gene70303.t1.exon12;Parent=MS.gene70303.t1 |
| chr4.1 | CDS | 9367649 | 9367772 | 9367649 | ID=cds.MS.gene70303.t1;Parent=MS.gene70303.t1 |
| chr4.1 | exon | 9367858 | 9367945 | 9367858 | ID=MS.gene70303.t1.exon13;Parent=MS.gene70303.t1 |
| chr4.1 | CDS | 9367858 | 9367945 | 9367858 | ID=cds.MS.gene70303.t1;Parent=MS.gene70303.t1 |
| chr4.1 | exon | 9368038 | 9368137 | 9368038 | ID=MS.gene70303.t1.exon14;Parent=MS.gene70303.t1 |
| chr4.1 | CDS | 9368038 | 9368137 | 9368038 | ID=cds.MS.gene70303.t1;Parent=MS.gene70303.t1 |
| chr4.1 | exon | 9368221 | 9368273 | 9368221 | ID=MS.gene70303.t1.exon15;Parent=MS.gene70303.t1 |
| chr4.1 | CDS | 9368221 | 9368273 | 9368221 | ID=cds.MS.gene70303.t1;Parent=MS.gene70303.t1 |
| chr4.1 | exon | 9368470 | 9368646 | 9368470 | ID=MS.gene70303.t1.exon16;Parent=MS.gene70303.t1 |
| chr4.1 | CDS | 9368470 | 9368646 | 9368470 | ID=cds.MS.gene70303.t1;Parent=MS.gene70303.t1 |
| chr4.1 | exon | 9368741 | 9368778 | 9368741 | ID=MS.gene70303.t1.exon17;Parent=MS.gene70303.t1 |
| chr4.1 | CDS | 9368741 | 9368778 | 9368741 | ID=cds.MS.gene70303.t1;Parent=MS.gene70303.t1 |
| chr4.1 | exon | 9370252 | 9370345 | 9370252 | ID=MS.gene70303.t1.exon18;Parent=MS.gene70303.t1 |
| chr4.1 | CDS | 9370252 | 9370345 | 9370252 | ID=cds.MS.gene70303.t1;Parent=MS.gene70303.t1 |
| chr4.1 | exon | 9371225 | 9371404 | 9371225 | ID=MS.gene70303.t1.exon19;Parent=MS.gene70303.t1 |
| chr4.1 | CDS | 9371225 | 9371404 | 9371225 | ID=cds.MS.gene70303.t1;Parent=MS.gene70303.t1 |
| chr4.1 | exon | 9371507 | 9371615 | 9371507 | ID=MS.gene70303.t1.exon20;Parent=MS.gene70303.t1 |
| chr4.1 | CDS | 9371507 | 9371615 | 9371507 | ID=cds.MS.gene70303.t1;Parent=MS.gene70303.t1 |
| chr4.1 | exon | 9371705 | 9371774 | 9371705 | ID=MS.gene70303.t1.exon21;Parent=MS.gene70303.t1 |
| chr4.1 | CDS | 9371705 | 9371774 | 9371705 | ID=cds.MS.gene70303.t1;Parent=MS.gene70303.t1 |
| chr4.1 | exon | 9372062 | 9372209 | 9372062 | ID=MS.gene70303.t1.exon22;Parent=MS.gene70303.t1 |
| chr4.1 | CDS | 9372062 | 9372209 | 9372062 | ID=cds.MS.gene70303.t1;Parent=MS.gene70303.t1 |
| chr4.1 | exon | 9372765 | 9372893 | 9372765 | ID=MS.gene70303.t1.exon23;Parent=MS.gene70303.t1 |
| chr4.1 | CDS | 9372765 | 9372893 | 9372765 | ID=cds.MS.gene70303.t1;Parent=MS.gene70303.t1 |
| chr4.1 | exon | 9373285 | 9373410 | 9373285 | ID=MS.gene70303.t1.exon24;Parent=MS.gene70303.t1 |
| chr4.1 | CDS | 9373285 | 9373410 | 9373285 | ID=cds.MS.gene70303.t1;Parent=MS.gene70303.t1 |
| chr4.1 | exon | 9373626 | 9373691 | 9373626 | ID=MS.gene70303.t1.exon25;Parent=MS.gene70303.t1 |
| chr4.1 | CDS | 9373626 | 9373691 | 9373626 | ID=cds.MS.gene70303.t1;Parent=MS.gene70303.t1 |
| chr4.1 | exon | 9373813 | 9374070 | 9373813 | ID=MS.gene70303.t1.exon26;Parent=MS.gene70303.t1 |
| chr4.1 | CDS | 9373813 | 9374070 | 9373813 | ID=cds.MS.gene70303.t1;Parent=MS.gene70303.t1 |
| Gene Sequence |
| Protein sequence |
