Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031682.t1 | XP_003607505.1 | 99.7 | 886 | 3 | 0 | 1 | 886 | 1 | 886 | 0.00E+00 | 1588.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031682.t1 | Q9SIV2 | 81.7 | 897 | 147 | 4 | 1 | 886 | 1 | 891 | 0.0e+00 | 1298.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031682.t1 | G7JTX3 | 99.7 | 886 | 3 | 0 | 1 | 886 | 1 | 886 | 0.0e+00 | 1588.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031682.t1 | MTR_4g078780 | 99.661 | 886 | 3 | 0 | 1 | 886 | 1 | 886 | 0.0 | 1815 |
MS.gene031682.t1 | MTR_4g078780 | 99.549 | 886 | 3 | 1 | 1 | 886 | 1 | 885 | 0.0 | 1808 |
MS.gene031682.t1 | MTR_4g078780 | 99.739 | 767 | 2 | 0 | 1 | 767 | 1 | 767 | 0.0 | 1571 |
MS.gene031682.t1 | MTR_1g058950 | 83.333 | 96 | 16 | 0 | 784 | 879 | 4 | 99 | 2.76e-48 | 166 |
MS.gene031682.t1 | MTR_0265s0020 | 87.719 | 57 | 7 | 0 | 823 | 879 | 145 | 201 | 3.32e-26 | 107 |
MS.gene031682.t1 | MTR_8g106120 | 22.622 | 473 | 300 | 14 | 365 | 815 | 379 | 807 | 7.31e-15 | 79.7 |
MS.gene031682.t1 | MTR_8g106120 | 22.622 | 473 | 300 | 14 | 365 | 815 | 157 | 585 | 8.34e-15 | 79.3 |
MS.gene031682.t1 | MTR_2g067250 | 22.410 | 473 | 301 | 14 | 365 | 815 | 377 | 805 | 5.66e-14 | 76.6 |
MS.gene031682.t1 | MTR_8g106120 | 22.535 | 355 | 237 | 8 | 365 | 709 | 379 | 705 | 3.10e-11 | 67.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031682.t1 | AT2G20580 | 83.501 | 897 | 131 | 4 | 1 | 886 | 1 | 891 | 0.0 | 1510 |
MS.gene031682.t1 | AT4G28470 | 80.851 | 893 | 156 | 3 | 3 | 886 | 5 | 891 | 0.0 | 1478 |
MS.gene031682.t1 | AT4G08140 | 80.000 | 70 | 14 | 0 | 51 | 120 | 2 | 71 | 2.50e-30 | 115 |
MS.gene031682.t1 | AT1G04810 | 22.766 | 470 | 304 | 14 | 365 | 815 | 377 | 806 | 2.40e-14 | 78.2 |
MS.gene031682.t1 | AT2G32730 | 22.766 | 470 | 304 | 14 | 365 | 815 | 377 | 806 | 2.64e-14 | 77.8 |
Find 222 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACTTATGGTGTCAGAAATT+TGG | 0.163690 | 4.3:+30440712 | MS.gene031682:intron |
GACTAGAATTGGTGCAATTA+TGG | 0.180764 | 4.3:+30447847 | MS.gene031682:CDS |
TTGACAAAACAAACTTTAAA+AGG | 0.192273 | 4.3:+30441240 | MS.gene031682:CDS |
GGCCTTGGTCTTCTTTATCT+TGG | 0.200767 | 4.3:+30448191 | MS.gene031682:CDS |
CATGCAGGTGCAAAATCTTT+TGG | 0.202835 | 4.3:+30448633 | MS.gene031682:intron |
AAAACCTCACCTGCTCATTC+TGG | 0.227874 | 4.3:-30447895 | None:intergenic |
TAAAGGACAATCCAGATTAT+AGG | 0.228060 | 4.3:+30450083 | MS.gene031682:CDS |
ACCCCTGTTCTCCTGGCTGC+TGG | 0.245592 | 4.3:+30449909 | MS.gene031682:CDS |
TGTCATTGCTGGTGCATTAT+TGG | 0.251358 | 4.3:+30447651 | MS.gene031682:CDS |
GCTGGTGCTGGCGCCGTTGC+CGG | 0.280560 | 4.3:-30439688 | None:intergenic |
TCTTCAAGTAGTGGTTCTTC+TGG | 0.284064 | 4.3:+30447407 | MS.gene031682:CDS |
AGCAATCATATTTACATTGA+TGG | 0.285349 | 4.3:+30448118 | MS.gene031682:CDS |
GCCTTCACTGCAATTGCATT+GGG | 0.289158 | 4.3:+30448056 | MS.gene031682:CDS |
TGCCCAAGGTCTTGTACATT+TGG | 0.290221 | 4.3:+30449367 | MS.gene031682:CDS |
GCATTTGTTAATGCCGGATT+TGG | 0.293129 | 4.3:+30447255 | MS.gene031682:CDS |
GCGCCGTTGCCGGCGCGGTT+AGG | 0.294433 | 4.3:-30439678 | None:intergenic |
CTAGGTTCAGAGGGAGATAT+TGG | 0.298113 | 4.3:+30440506 | MS.gene031682:CDS |
TCTTAGGCACATTTGCTTGA+TGG | 0.300355 | 4.3:+30447168 | MS.gene031682:intron |
TTCTCCTGGCTGCTGGGGAT+AGG | 0.305991 | 4.3:+30449916 | MS.gene031682:CDS |
TTCGTCATTGCAGAAGTATT+TGG | 0.307151 | 4.3:+30440289 | MS.gene031682:intron |
TATGGCGGAATCAGAGTTAA+AGG | 0.315185 | 4.3:+30440192 | MS.gene031682:CDS |
CGTGCAGTCAGATGAAGATT+TGG | 0.320246 | 4.3:+30439868 | MS.gene031682:intron |
ATTTGATCAGGTCAATGTTA+TGG | 0.321936 | 4.3:+30449013 | MS.gene031682:intron |
AATGCAATTTGCAGTGCATT+TGG | 0.325383 | 4.3:-30442736 | None:intergenic |
AAAGGACAATCCAGATTATA+GGG | 0.325952 | 4.3:+30450084 | MS.gene031682:CDS |
TTTGGCGGTGCCGCTGGTGC+TGG | 0.327421 | 4.3:-30439700 | None:intergenic |
TCCCCAGCAGCCAGGAGAAC+AGG | 0.334078 | 4.3:-30449912 | None:intergenic |
TGTTCTCTACTTCCTCGTTT+TGG | 0.335578 | 4.3:+30449669 | MS.gene031682:CDS |
GTCATTGCTGGTGCATTATT+GGG | 0.338666 | 4.3:+30447652 | MS.gene031682:CDS |
ATTGGTGCAATTATGGGATT+AGG | 0.338723 | 4.3:+30447854 | MS.gene031682:CDS |
CCCCTGTTCTCCTGGCTGCT+GGG | 0.345055 | 4.3:+30449910 | MS.gene031682:CDS |
CCCCTATCACCAATTCTTGA+AGG | 0.345401 | 4.3:+30450049 | MS.gene031682:CDS |
ACTAGAATTGGTGCAATTAT+GGG | 0.345863 | 4.3:+30447848 | MS.gene031682:CDS |
CTCCCTCAGCAGACATTGTA+AGG | 0.346118 | 4.3:-30440334 | None:intergenic |
CAAATATCCTTCACTTAACT+TGG | 0.350252 | 4.3:-30443307 | None:intergenic |
TGAAAGCCGGTGATTGTCTT+AGG | 0.351647 | 4.3:-30449876 | None:intergenic |
ATTACAAAACCTTCAAGAAT+TGG | 0.353080 | 4.3:-30450058 | None:intergenic |
TGCACCTTGTATATATCTTC+AGG | 0.356157 | 4.3:-30443369 | None:intergenic |
GGCTGACATATTATCAGTAT+TGG | 0.356961 | 4.3:+30440310 | MS.gene031682:CDS |
GTTATCTCCTTGGGTCTAAT+AGG | 0.358044 | 4.3:+30449172 | MS.gene031682:CDS |
GCCTTGGTCTTCTTTATCTT+GGG | 0.359647 | 4.3:+30448192 | MS.gene031682:CDS |
GTTGCCGGCGCGGTTAGGTT+CGG | 0.361415 | 4.3:-30439673 | None:intergenic |
GTAGCAATGGCTGAAGAATT+AGG | 0.361899 | 4.3:+30448724 | MS.gene031682:CDS |
GCCCAAGGTCTTGTACATTT+GGG | 0.363986 | 4.3:+30449368 | MS.gene031682:CDS |
TGACATGGTTATCATTACTA+TGG | 0.373993 | 4.3:-30447633 | None:intergenic |
TGCCTTCACTGCAATTGCAT+TGG | 0.375145 | 4.3:+30448055 | MS.gene031682:CDS |
GAAGATAGTTCGACTAGAAT+TGG | 0.377228 | 4.3:+30447836 | MS.gene031682:CDS |
GACTAGTGCTGCTGCAAGTC+TGG | 0.377954 | 4.3:+30447463 | MS.gene031682:CDS |
GCCTCTATCAGTGCCTGTTC+GGG | 0.382032 | 4.3:+30449815 | MS.gene031682:CDS |
TAAGGCATATTATGAAACTA+TGG | 0.383151 | 4.3:+30440174 | MS.gene031682:CDS |
ACAAACAATGCTCGAATTGC+CGG | 0.384804 | 4.3:+30449202 | MS.gene031682:CDS |
TCATGTGCCTATGCTGGAAC+TGG | 0.385983 | 4.3:+30448510 | MS.gene031682:CDS |
AGCCTCTATCAGTGCCTGTT+CGG | 0.386811 | 4.3:+30449814 | MS.gene031682:CDS |
TTGCCGGCGCGGTTAGGTTC+GGG | 0.387598 | 4.3:-30439672 | None:intergenic |
CGAAGAACGAGAAGTGTTGC+AGG | 0.387775 | 4.3:+30443269 | MS.gene031682:CDS |
TTCGTCTTTGGCGGTGCCGC+TGG | 0.390264 | 4.3:-30439706 | None:intergenic |
CGACTTCTCCCTCTTGGCCT+TGG | 0.391180 | 4.3:+30448176 | MS.gene031682:CDS |
CATGGGGACATGAGTATGTT+AGG | 0.392382 | 4.3:+30440531 | MS.gene031682:CDS |
TCATTCTACCCCTGTTCTCC+TGG | 0.393262 | 4.3:+30449902 | MS.gene031682:CDS |
GTAGTGGTTCTTCTGGAAAC+TGG | 0.395865 | 4.3:+30447414 | MS.gene031682:CDS |
TTAGAACATCTTCTACAGTA+TGG | 0.397139 | 4.3:+30448769 | MS.gene031682:CDS |
TCTCCTGGCTGCTGGGGATA+GGG | 0.401494 | 4.3:+30449917 | MS.gene031682:CDS |
CATCACTCTTCCCTATAATC+TGG | 0.405215 | 4.3:-30450094 | None:intergenic |
AACCTTCAAGAATTGGTGAT+AGG | 0.407353 | 4.3:-30450051 | None:intergenic |
CTTGATGGCCGTGCAAGTGC+TGG | 0.408444 | 4.3:+30447183 | MS.gene031682:CDS |
ACTGCTTGGCCAACCCGAAC+AGG | 0.423439 | 4.3:-30449828 | None:intergenic |
GTTGTATGTTGAGAGGGTTC+AGG | 0.424586 | 4.3:+30439910 | MS.gene031682:CDS |
CGAGCAGTTCCTCTGGCACT+TGG | 0.426143 | 4.3:+30448808 | MS.gene031682:CDS |
ACAGGCAGCAGTTATCTCCT+TGG | 0.429907 | 4.3:+30449162 | MS.gene031682:intron |
CACCAAGGTCCTGCAGTCCT+TGG | 0.430705 | 4.3:+30448691 | MS.gene031682:CDS |
ACTGCAAATTGCATTGTTCA+TGG | 0.433433 | 4.3:+30442744 | MS.gene031682:CDS |
TGTTAATGCCGGATTTGGTC+AGG | 0.436038 | 4.3:+30447260 | MS.gene031682:CDS |
TGCGGCAGCTTCGTCTTTGG+CGG | 0.436686 | 4.3:-30439715 | None:intergenic |
GTTAATGCATTTGTTAATGC+CGG | 0.439292 | 4.3:+30447249 | MS.gene031682:CDS |
CGTAGAAACTTCAGTGGCTT+GGG | 0.439539 | 4.3:-30440133 | None:intergenic |
CTCCCTCTGAACCTAGTAAT+CGG | 0.440688 | 4.3:-30440499 | None:intergenic |
CTTACGCGACTTCTCCCTCT+TGG | 0.441492 | 4.3:+30448170 | MS.gene031682:CDS |
ATCATGGCTAAGTCTGCTTA+AGG | 0.441554 | 4.3:-30449039 | None:intergenic |
GAAGATCGAGAGCGAAGATC+TGG | 0.445605 | 4.3:+30439743 | MS.gene031682:CDS |
AAACCTCACCTGCTCATTCT+GGG | 0.446754 | 4.3:-30447894 | None:intergenic |
TCTTCTTTATCTTGGGAAGC+AGG | 0.447704 | 4.3:+30448199 | MS.gene031682:CDS |
TGAAACATACACAAAATAGA+AGG | 0.448647 | 4.3:-30449267 | None:intergenic |
AATGATAACCATGTCATTGC+TGG | 0.449019 | 4.3:+30447640 | MS.gene031682:CDS |
CAGGCAGCAGTTATCTCCTT+GGG | 0.449890 | 4.3:+30449163 | MS.gene031682:intron |
GGCAACGGCGCCAGCACCAG+CGG | 0.456358 | 4.3:+30439690 | MS.gene031682:CDS |
AGCAGTAGACGTTGTTGGAC+AGG | 0.459860 | 4.3:+30449845 | MS.gene031682:CDS |
TCATTGTACCTGACCAAATC+CGG | 0.459928 | 4.3:-30447268 | None:intergenic |
AGAGGGAGAAGTCGCGTAAG+AGG | 0.462942 | 4.3:-30448167 | None:intergenic |
CTACTATCATGTGCCTATGC+TGG | 0.463677 | 4.3:+30448504 | MS.gene031682:CDS |
AATGTCTGCTGAGGGAGAAC+GGG | 0.467324 | 4.3:+30440340 | MS.gene031682:CDS |
TTACTATGGGATGTTGACTC+TGG | 0.470974 | 4.3:+30447586 | MS.gene031682:CDS |
GCCACATTACGGTACTCTTA+AGG | 0.471860 | 4.3:+30440156 | MS.gene031682:CDS |
ATCAAAAGATCAACAGCCTC+TGG | 0.472093 | 4.3:-30441093 | None:intergenic |
TCCCAAATGTACAAGACCTT+GGG | 0.474672 | 4.3:-30449369 | None:intergenic |
ATCACGTCAAGCGAAGCTTT+AGG | 0.474727 | 4.3:-30448032 | None:intergenic |
ACCTTCAAGAATTGGTGATA+GGG | 0.476467 | 4.3:-30450050 | None:intergenic |
CAGAGGGAGATATTGGTTCA+TGG | 0.477824 | 4.3:+30440513 | MS.gene031682:CDS |
AGTCTCAAATACCGATTACT+AGG | 0.479190 | 4.3:+30440488 | MS.gene031682:CDS |
TTTGGCTTTGAAGCAACAGC+TGG | 0.479199 | 4.3:+30439886 | MS.gene031682:CDS |
TGCTGGCGCCGTTGCCGGCG+CGG | 0.483349 | 4.3:-30439683 | None:intergenic |
AGAGCAACCTTCTGCAACCC+GGG | 0.485765 | 4.3:-30439941 | None:intergenic |
CCGTAGAAACTTCAGTGGCT+TGG | 0.486666 | 4.3:-30440134 | None:intergenic |
AAGTTTCTACGGCCACATTA+CGG | 0.488041 | 4.3:+30440145 | MS.gene031682:CDS |
TTCCCAAATGTACAAGACCT+TGG | 0.489170 | 4.3:-30449370 | None:intergenic |
CTGCCCTATCCCCAGCAGCC+AGG | 0.494849 | 4.3:-30449920 | None:intergenic |
ATTAAAAGTCTTTGAAACTT+CGG | 0.496334 | 4.3:-30448451 | None:intergenic |
AGAGGGAGATATTGGTTCAT+GGG | 0.496959 | 4.3:+30440514 | MS.gene031682:CDS |
GCCCAATGCAATTGCAGTGA+AGG | 0.498300 | 4.3:-30448057 | None:intergenic |
TCCAATACTAGCATATCATC+TGG | 0.498885 | 4.3:-30442676 | None:intergenic |
TATGGTGTCAGAAATTTGGC+TGG | 0.499427 | 4.3:+30440716 | MS.gene031682:intron |
TATTCGCCGAGCAGTTCCTC+TGG | 0.500504 | 4.3:+30448801 | MS.gene031682:CDS |
TGCAGTCCTTGGAATTGCTA+TGG | 0.502997 | 4.3:+30448702 | MS.gene031682:CDS |
CAATGTCTGCTGAGGGAGAA+CGG | 0.504450 | 4.3:+30440339 | MS.gene031682:CDS |
ACACAATAGCTTTCATATCA+AGG | 0.505784 | 4.3:-30449630 | None:intergenic |
GGTCTTGTACATTTGGGAAA+GGG | 0.507186 | 4.3:+30449374 | MS.gene031682:CDS |
GATCGGAGTGAGTCAGAGTT+GGG | 0.508316 | 4.3:+30448140 | MS.gene031682:CDS |
CCCTGTTCTCCTGGCTGCTG+GGG | 0.508335 | 4.3:+30449911 | MS.gene031682:CDS |
GGATTAGGAATTGCATATGC+TGG | 0.510069 | 4.3:+30447869 | MS.gene031682:CDS |
AATAGTTGCCTTTCACATGA+AGG | 0.510708 | 4.3:+30440946 | MS.gene031682:CDS |
AAGAGCAACCTTCTGCAACC+CGG | 0.510865 | 4.3:-30439942 | None:intergenic |
GATATGAAAGCTATTGTGTT+GGG | 0.511246 | 4.3:+30449634 | MS.gene031682:CDS |
TATATATCTTCAGGGGACTT+AGG | 0.511864 | 4.3:-30443360 | None:intergenic |
GCACCTTGTATATATCTTCA+GGG | 0.512615 | 4.3:-30443368 | None:intergenic |
ACCCGAACAGGCACTGATAG+AGG | 0.514416 | 4.3:-30449816 | None:intergenic |
TGGCTTGGGCACTGAAGTCA+TGG | 0.515550 | 4.3:-30440119 | None:intergenic |
GGATCGGAGTGAGTCAGAGT+TGG | 0.515747 | 4.3:+30448139 | MS.gene031682:CDS |
ACCAGATGATATGCTAGTAT+TGG | 0.515944 | 4.3:+30442675 | MS.gene031682:CDS |
TCATATTTACATTGATGGAT+CGG | 0.517102 | 4.3:+30448123 | MS.gene031682:CDS |
GCTTTAGGATCACTCAGAAT+AGG | 0.517639 | 4.3:-30448017 | None:intergenic |
TGCATTGGGCTTGATTTACG+TGG | 0.518309 | 4.3:+30448070 | MS.gene031682:CDS |
CAACTTCTGAATCAGTATCA+TGG | 0.519781 | 4.3:-30449055 | None:intergenic |
GAACCTAACCGCGCCGGCAA+CGG | 0.523030 | 4.3:+30439675 | MS.gene031682:CDS |
CTCCATGACTTCAATATCAC+GGG | 0.523436 | 4.3:-30443337 | None:intergenic |
CTTTCAGTTACGATACAAGT+TGG | 0.527671 | 4.3:+30447992 | MS.gene031682:intron |
TCCTTGGGTCTAATAGGCGC+TGG | 0.528692 | 4.3:+30449178 | MS.gene031682:CDS |
CCCCAGCAGCCAGGAGAACA+GGG | 0.529499 | 4.3:-30449911 | None:intergenic |
GCATCAGATTCTTCAAGTAG+TGG | 0.529733 | 4.3:+30447398 | MS.gene031682:CDS |
GTCCAACAACGTCTACTGCT+TGG | 0.531076 | 4.3:-30449842 | None:intergenic |
AAAGAAGACCAAGGCCAAGA+GGG | 0.534797 | 4.3:-30448184 | None:intergenic |
GGCGCCAATTGATGATCTCA+TGG | 0.535953 | 4.3:+30440910 | MS.gene031682:CDS |
ATTGTTCATGGATAACCTGC+TGG | 0.537779 | 4.3:+30442756 | MS.gene031682:CDS |
TGAAAGATTGCGAAGCATGC+CGG | 0.538412 | 4.3:-30449221 | None:intergenic |
CACTTGCACCAGCACTTGCA+CGG | 0.542212 | 4.3:-30447191 | None:intergenic |
AGGGTTCAGGATACTGACCC+CGG | 0.543270 | 4.3:+30439923 | MS.gene031682:CDS |
TCATGGAGCTTGTAGAAGTA+CGG | 0.544317 | 4.3:-30440102 | None:intergenic |
GCTGGTGCATTATTGGGAGT+TGG | 0.544941 | 4.3:+30447658 | MS.gene031682:CDS |
TGCCCGTGATATTGAAGTCA+TGG | 0.546113 | 4.3:+30443335 | MS.gene031682:CDS |
GGCCAAGCAGTAGACGTTGT+TGG | 0.547192 | 4.3:+30449840 | MS.gene031682:CDS |
AGTTCCATGAGATCATCAAT+TGG | 0.550068 | 4.3:-30440914 | None:intergenic |
CTATCAGTGCCTGTTCGGGT+TGG | 0.551095 | 4.3:+30449819 | MS.gene031682:CDS |
TTCCAAGGACTGCAGGACCT+TGG | 0.552548 | 4.3:-30448693 | None:intergenic |
GATGTTGTTGACTGTGGATG+AGG | 0.554247 | 4.3:+30449785 | MS.gene031682:CDS |
AGGTCTTGTACATTTGGGAA+AGG | 0.555099 | 4.3:+30449373 | MS.gene031682:CDS |
AACAATTCCAAGTTAAGTGA+AGG | 0.556109 | 4.3:+30443300 | MS.gene031682:CDS |
CCTTCAAGAATTGGTGATAG+GGG | 0.557370 | 4.3:-30450049 | None:intergenic |
TACTGACCCCGGGTTGCAGA+AGG | 0.557812 | 4.3:+30439934 | MS.gene031682:CDS |
TTGTAGGCAATGGCACTCCT+TGG | 0.558145 | 4.3:+30447797 | MS.gene031682:intron |
TGCTGGTTCCCAGAATGAGC+AGG | 0.560900 | 4.3:+30447886 | MS.gene031682:CDS |
CCAAGCCACTGAAGTTTCTA+CGG | 0.562286 | 4.3:+30440134 | MS.gene031682:CDS |
CGGTTAGGTTCGGGAGCCAT+CGG | 0.562440 | 4.3:-30439663 | None:intergenic |
GTAGAAGATGTTCTAACGAT+CGG | 0.567757 | 4.3:-30448762 | None:intergenic |
TCCACAGTCAACAACATCCT+CGG | 0.571268 | 4.3:-30449780 | None:intergenic |
TCTTTCAAGCTATTACTACA+AGG | 0.573652 | 4.3:+30449237 | MS.gene031682:CDS |
AGATAATACCTTCATGTGAA+AGG | 0.575016 | 4.3:-30440954 | None:intergenic |
ACTAGCATATCATCTGGTCC+AGG | 0.575933 | 4.3:-30442670 | None:intergenic |
GGTCGTCCTAAGACAATCAC+CGG | 0.576068 | 4.3:+30449870 | MS.gene031682:CDS |
AGCTGGAGTTGTATGTTGAG+AGG | 0.576584 | 4.3:+30439903 | MS.gene031682:CDS |
GCTGGAGTTGTATGTTGAGA+GGG | 0.577745 | 4.3:+30439904 | MS.gene031682:CDS |
ACATACACAAAATAGAAGGC+TGG | 0.579470 | 4.3:-30449263 | None:intergenic |
TGGAATTGCTATGGTAGCAA+TGG | 0.582283 | 4.3:+30448711 | MS.gene031682:CDS |
GGCCCTTACAATGTCTGCTG+AGG | 0.582711 | 4.3:+30440331 | MS.gene031682:CDS |
GTAGACGTTGTTGGACAGGC+AGG | 0.584047 | 4.3:+30449849 | MS.gene031682:CDS |
GCTCCATGACTTCAATATCA+CGG | 0.591509 | 4.3:-30443338 | None:intergenic |
TGATATGAAAGCTATTGTGT+TGG | 0.593763 | 4.3:+30449633 | MS.gene031682:CDS |
GCATTGGGCTTGATTTACGT+GGG | 0.594648 | 4.3:+30448071 | MS.gene031682:CDS |
TGTATCTGACAAGTTCAGCT+AGG | 0.595489 | 4.3:+30441270 | MS.gene031682:CDS |
GCCCTTACAATGTCTGCTGA+GGG | 0.595569 | 4.3:+30440332 | MS.gene031682:CDS |
CTACAGGTGCGGATTGCCCA+AGG | 0.595817 | 4.3:+30449353 | MS.gene031682:intron |
AAGACACGGTCAGAATGGTA+AGG | 0.600016 | 4.3:-30449413 | None:intergenic |
TACTGATTCAGAAGTTGCAA+TGG | 0.600180 | 4.3:+30449061 | MS.gene031682:CDS |
TCAAGAATATGCAAAACGAC+AGG | 0.600683 | 4.3:+30440748 | MS.gene031682:CDS |
AACATTCCCAGTTCCAGCAT+AGG | 0.601552 | 4.3:-30448517 | None:intergenic |
GAGGGAGATATTGGTTCATG+GGG | 0.601739 | 4.3:+30440515 | MS.gene031682:CDS |
ATACCGATTACTAGGTTCAG+AGG | 0.603273 | 4.3:+30440496 | MS.gene031682:CDS |
TCCAGCGCCTATTAGACCCA+AGG | 0.605628 | 4.3:-30449179 | None:intergenic |
GTCCCCTGAAGATATATACA+AGG | 0.607347 | 4.3:+30443365 | MS.gene031682:CDS |
TACCGATTACTAGGTTCAGA+GGG | 0.611712 | 4.3:+30440497 | MS.gene031682:CDS |
ATAGCAATTCCAAGGACTGC+AGG | 0.612981 | 4.3:-30448700 | None:intergenic |
ATAGTAAGACACGGTCAGAA+TGG | 0.613821 | 4.3:-30449418 | None:intergenic |
TGGAACTGGGAATGTTCTCA+AGG | 0.617089 | 4.3:+30448524 | MS.gene031682:CDS |
TTGCTACCATAGCAATTCCA+AGG | 0.618346 | 4.3:-30448708 | None:intergenic |
TAAAGAAGACCAAGGCCAAG+AGG | 0.621416 | 4.3:-30448185 | None:intergenic |
CACAGCAGACCAAGTGCCAG+AGG | 0.629366 | 4.3:-30448817 | None:intergenic |
GCCTTAAGAGTACCGTAATG+TGG | 0.634211 | 4.3:-30440157 | None:intergenic |
CATGTGCCTATGCTGGAACT+GGG | 0.635630 | 4.3:+30448511 | MS.gene031682:CDS |
TGTTCACAACATCTTGACAA+AGG | 0.637361 | 4.3:+30448661 | MS.gene031682:CDS |
GGGTTCAGGATACTGACCCC+GGG | 0.638406 | 4.3:+30439924 | MS.gene031682:CDS |
CCCAGCAGCCAGGAGAACAG+GGG | 0.638606 | 4.3:-30449910 | None:intergenic |
GCAGCATAATGCTGAACCAG+AGG | 0.639545 | 4.3:+30441077 | MS.gene031682:intron |
GGTAGAATGAGTCTGAAAGC+CGG | 0.642327 | 4.3:-30449889 | None:intergenic |
ATAATGCACCAGCAATGACA+TGG | 0.644762 | 4.3:-30447648 | None:intergenic |
GCTGTGTATATCAAACCCAA+AGG | 0.645766 | 4.3:+30448834 | MS.gene031682:CDS |
CATTAACAAAAGTAGCAGCA+AGG | 0.648095 | 4.3:-30447233 | None:intergenic |
TGAAGAATTAGGTGTTGAGA+TGG | 0.648729 | 4.3:+30448735 | MS.gene031682:CDS |
GCTCCCGAACCTAACCGCGC+CGG | 0.652018 | 4.3:+30439669 | MS.gene031682:CDS |
AGGTTGCTCTTGAAAGCATG+AGG | 0.652603 | 4.3:+30439954 | MS.gene031682:CDS |
GTAACAACAGGAAAGTGTTG+AGG | 0.652898 | 4.3:+30448422 | MS.gene031682:intron |
TTACGTGGGTTCTTGCAATG+AGG | 0.658349 | 4.3:+30448085 | MS.gene031682:CDS |
TGTGCATTGATAGAGTGAAG+AGG | 0.660245 | 4.3:+30440889 | MS.gene031682:intron |
CACCTTGTATATATCTTCAG+GGG | 0.666070 | 4.3:-30443367 | None:intergenic |
TCCCTCAGCAGACATTGTAA+GGG | 0.666227 | 4.3:-30440333 | None:intergenic |
GAGACTCAAACAAACCTGCA+TGG | 0.668674 | 4.3:-30449692 | None:intergenic |
GCCGAGGATGTTGTTGACTG+TGG | 0.669421 | 4.3:+30449779 | MS.gene031682:intron |
GGCATATTATGAAACTATGG+CGG | 0.673217 | 4.3:+30440177 | MS.gene031682:CDS |
GACAAAGGTGAGATGCACCA+AGG | 0.682675 | 4.3:+30448676 | MS.gene031682:CDS |
AAACCTGCATGGCCAAAACG+AGG | 0.682882 | 4.3:-30449681 | None:intergenic |
GGTCTTGCTGACAGCATGTG+AGG | 0.684340 | 4.3:+30442906 | MS.gene031682:intron |
GAGCAACCTTCTGCAACCCG+GGG | 0.688966 | 4.3:-30439940 | None:intergenic |
CAAGTGCCAGAGGAACTGCT+CGG | 0.690748 | 4.3:-30448807 | None:intergenic |
TCCCAAGATAAAGAAGACCA+AGG | 0.693423 | 4.3:-30448193 | None:intergenic |
TGTGGCCGTAGAAACTTCAG+TGG | 0.696714 | 4.3:-30440139 | None:intergenic |
CTTACGGTGATAGTAAGACA+CGG | 0.711897 | 4.3:-30449427 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 30439666 | 30450114 | 30439666 | ID=MS.gene031682 |
chr4.3 | mRNA | 30439666 | 30450114 | 30439666 | ID=MS.gene031682.t1;Parent=MS.gene031682 |
chr4.3 | exon | 30439666 | 30439764 | 30439666 | ID=MS.gene031682.t1.exon1;Parent=MS.gene031682.t1 |
chr4.3 | CDS | 30439666 | 30439764 | 30439666 | ID=cds.MS.gene031682.t1;Parent=MS.gene031682.t1 |
chr4.3 | exon | 30439875 | 30439975 | 30439875 | ID=MS.gene031682.t1.exon2;Parent=MS.gene031682.t1 |
chr4.3 | CDS | 30439875 | 30439975 | 30439875 | ID=cds.MS.gene031682.t1;Parent=MS.gene031682.t1 |
chr4.3 | exon | 30440093 | 30440213 | 30440093 | ID=MS.gene031682.t1.exon3;Parent=MS.gene031682.t1 |
chr4.3 | CDS | 30440093 | 30440213 | 30440093 | ID=cds.MS.gene031682.t1;Parent=MS.gene031682.t1 |
chr4.3 | exon | 30440302 | 30440361 | 30440302 | ID=MS.gene031682.t1.exon4;Parent=MS.gene031682.t1 |
chr4.3 | CDS | 30440302 | 30440361 | 30440302 | ID=cds.MS.gene031682.t1;Parent=MS.gene031682.t1 |
chr4.3 | exon | 30440485 | 30440552 | 30440485 | ID=MS.gene031682.t1.exon5;Parent=MS.gene031682.t1 |
chr4.3 | CDS | 30440485 | 30440552 | 30440485 | ID=cds.MS.gene031682.t1;Parent=MS.gene031682.t1 |
chr4.3 | exon | 30440727 | 30440769 | 30440727 | ID=MS.gene031682.t1.exon6;Parent=MS.gene031682.t1 |
chr4.3 | CDS | 30440727 | 30440769 | 30440727 | ID=cds.MS.gene031682.t1;Parent=MS.gene031682.t1 |
chr4.3 | exon | 30440902 | 30440967 | 30440902 | ID=MS.gene031682.t1.exon7;Parent=MS.gene031682.t1 |
chr4.3 | CDS | 30440902 | 30440967 | 30440902 | ID=cds.MS.gene031682.t1;Parent=MS.gene031682.t1 |
chr4.3 | exon | 30441081 | 30441119 | 30441081 | ID=MS.gene031682.t1.exon8;Parent=MS.gene031682.t1 |
chr4.3 | CDS | 30441081 | 30441119 | 30441081 | ID=cds.MS.gene031682.t1;Parent=MS.gene031682.t1 |
chr4.3 | exon | 30441209 | 30441291 | 30441209 | ID=MS.gene031682.t1.exon9;Parent=MS.gene031682.t1 |
chr4.3 | CDS | 30441209 | 30441291 | 30441209 | ID=cds.MS.gene031682.t1;Parent=MS.gene031682.t1 |
chr4.3 | exon | 30442663 | 30442777 | 30442663 | ID=MS.gene031682.t1.exon10;Parent=MS.gene031682.t1 |
chr4.3 | CDS | 30442663 | 30442777 | 30442663 | ID=cds.MS.gene031682.t1;Parent=MS.gene031682.t1 |
chr4.3 | exon | 30442920 | 30442994 | 30442920 | ID=MS.gene031682.t1.exon11;Parent=MS.gene031682.t1 |
chr4.3 | CDS | 30442920 | 30442994 | 30442920 | ID=cds.MS.gene031682.t1;Parent=MS.gene031682.t1 |
chr4.3 | exon | 30443228 | 30443386 | 30443228 | ID=MS.gene031682.t1.exon12;Parent=MS.gene031682.t1 |
chr4.3 | CDS | 30443228 | 30443386 | 30443228 | ID=cds.MS.gene031682.t1;Parent=MS.gene031682.t1 |
chr4.3 | exon | 30447174 | 30447281 | 30447174 | ID=MS.gene031682.t1.exon13;Parent=MS.gene031682.t1 |
chr4.3 | CDS | 30447174 | 30447281 | 30447174 | ID=cds.MS.gene031682.t1;Parent=MS.gene031682.t1 |
chr4.3 | exon | 30447380 | 30447484 | 30447380 | ID=MS.gene031682.t1.exon14;Parent=MS.gene031682.t1 |
chr4.3 | CDS | 30447380 | 30447484 | 30447380 | ID=cds.MS.gene031682.t1;Parent=MS.gene031682.t1 |
chr4.3 | exon | 30447577 | 30447717 | 30447577 | ID=MS.gene031682.t1.exon15;Parent=MS.gene031682.t1 |
chr4.3 | CDS | 30447577 | 30447717 | 30447577 | ID=cds.MS.gene031682.t1;Parent=MS.gene031682.t1 |
chr4.3 | exon | 30447803 | 30447907 | 30447803 | ID=MS.gene031682.t1.exon16;Parent=MS.gene031682.t1 |
chr4.3 | CDS | 30447803 | 30447907 | 30447803 | ID=cds.MS.gene031682.t1;Parent=MS.gene031682.t1 |
chr4.3 | exon | 30447999 | 30448220 | 30447999 | ID=MS.gene031682.t1.exon17;Parent=MS.gene031682.t1 |
chr4.3 | CDS | 30447999 | 30448220 | 30447999 | ID=cds.MS.gene031682.t1;Parent=MS.gene031682.t1 |
chr4.3 | exon | 30448432 | 30448545 | 30448432 | ID=MS.gene031682.t1.exon18;Parent=MS.gene031682.t1 |
chr4.3 | CDS | 30448432 | 30448545 | 30448432 | ID=cds.MS.gene031682.t1;Parent=MS.gene031682.t1 |
chr4.3 | exon | 30448640 | 30448855 | 30448640 | ID=MS.gene031682.t1.exon19;Parent=MS.gene031682.t1 |
chr4.3 | CDS | 30448640 | 30448855 | 30448640 | ID=cds.MS.gene031682.t1;Parent=MS.gene031682.t1 |
chr4.3 | exon | 30449023 | 30449082 | 30449023 | ID=MS.gene031682.t1.exon20;Parent=MS.gene031682.t1 |
chr4.3 | CDS | 30449023 | 30449082 | 30449023 | ID=cds.MS.gene031682.t1;Parent=MS.gene031682.t1 |
chr4.3 | exon | 30449166 | 30449279 | 30449166 | ID=MS.gene031682.t1.exon21;Parent=MS.gene031682.t1 |
chr4.3 | CDS | 30449166 | 30449279 | 30449166 | ID=cds.MS.gene031682.t1;Parent=MS.gene031682.t1 |
chr4.3 | exon | 30449359 | 30449444 | 30449359 | ID=MS.gene031682.t1.exon22;Parent=MS.gene031682.t1 |
chr4.3 | CDS | 30449359 | 30449444 | 30449359 | ID=cds.MS.gene031682.t1;Parent=MS.gene031682.t1 |
chr4.3 | exon | 30449591 | 30449699 | 30449591 | ID=MS.gene031682.t1.exon23;Parent=MS.gene031682.t1 |
chr4.3 | CDS | 30449591 | 30449699 | 30449591 | ID=cds.MS.gene031682.t1;Parent=MS.gene031682.t1 |
chr4.3 | exon | 30449780 | 30449958 | 30449780 | ID=MS.gene031682.t1.exon24;Parent=MS.gene031682.t1 |
chr4.3 | CDS | 30449780 | 30449958 | 30449780 | ID=cds.MS.gene031682.t1;Parent=MS.gene031682.t1 |
chr4.3 | exon | 30450042 | 30450114 | 30450042 | ID=MS.gene031682.t1.exon25;Parent=MS.gene031682.t1 |
chr4.3 | CDS | 30450042 | 30450114 | 30450042 | ID=cds.MS.gene031682.t1;Parent=MS.gene031682.t1 |
Gene Sequence |
Protein sequence |