Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045570.t1 | XP_003607505.1 | 99.7 | 886 | 3 | 0 | 1 | 886 | 1 | 886 | 0.00E+00 | 1588.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045570.t1 | Q9SIV2 | 81.7 | 897 | 147 | 4 | 1 | 886 | 1 | 891 | 0.0e+00 | 1298.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045570.t1 | G7JTX3 | 99.7 | 886 | 3 | 0 | 1 | 886 | 1 | 886 | 0.0e+00 | 1588.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045570.t1 | MTR_4g078780 | 99.661 | 886 | 3 | 0 | 1 | 886 | 1 | 886 | 0.0 | 1815 |
MS.gene045570.t1 | MTR_4g078780 | 99.549 | 886 | 3 | 1 | 1 | 886 | 1 | 885 | 0.0 | 1808 |
MS.gene045570.t1 | MTR_4g078780 | 99.739 | 767 | 2 | 0 | 1 | 767 | 1 | 767 | 0.0 | 1571 |
MS.gene045570.t1 | MTR_1g058950 | 83.333 | 96 | 16 | 0 | 784 | 879 | 4 | 99 | 2.76e-48 | 166 |
MS.gene045570.t1 | MTR_0265s0020 | 87.719 | 57 | 7 | 0 | 823 | 879 | 145 | 201 | 3.32e-26 | 107 |
MS.gene045570.t1 | MTR_8g106120 | 22.622 | 473 | 300 | 14 | 365 | 815 | 379 | 807 | 7.31e-15 | 79.7 |
MS.gene045570.t1 | MTR_8g106120 | 22.622 | 473 | 300 | 14 | 365 | 815 | 157 | 585 | 8.34e-15 | 79.3 |
MS.gene045570.t1 | MTR_2g067250 | 22.410 | 473 | 301 | 14 | 365 | 815 | 377 | 805 | 5.66e-14 | 76.6 |
MS.gene045570.t1 | MTR_8g106120 | 22.535 | 355 | 237 | 8 | 365 | 709 | 379 | 705 | 3.10e-11 | 67.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045570.t1 | AT2G20580 | 83.501 | 897 | 131 | 4 | 1 | 886 | 1 | 891 | 0.0 | 1510 |
MS.gene045570.t1 | AT4G28470 | 80.851 | 893 | 156 | 3 | 3 | 886 | 5 | 891 | 0.0 | 1478 |
MS.gene045570.t1 | AT4G08140 | 80.000 | 70 | 14 | 0 | 51 | 120 | 2 | 71 | 2.50e-30 | 115 |
MS.gene045570.t1 | AT1G04810 | 22.766 | 470 | 304 | 14 | 365 | 815 | 377 | 806 | 2.40e-14 | 78.2 |
MS.gene045570.t1 | AT2G32730 | 22.766 | 470 | 304 | 14 | 365 | 815 | 377 | 806 | 2.64e-14 | 77.8 |
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
33107 | gene | 16030 | 24237 | 16030 | ID=MS.gene045570 |
33107 | mRNA | 16030 | 24237 | 16030 | ID=MS.gene045570.t1;Parent=MS.gene045570 |
33107 | exon | 16030 | 16128 | 16030 | ID=MS.gene045570.t1.exon1;Parent=MS.gene045570.t1 |
33107 | CDS | 16030 | 16128 | 16030 | ID=cds.MS.gene045570.t1;Parent=MS.gene045570.t1 |
33107 | exon | 16238 | 16338 | 16238 | ID=MS.gene045570.t1.exon2;Parent=MS.gene045570.t1 |
33107 | CDS | 16238 | 16338 | 16238 | ID=cds.MS.gene045570.t1;Parent=MS.gene045570.t1 |
33107 | exon | 16456 | 16576 | 16456 | ID=MS.gene045570.t1.exon3;Parent=MS.gene045570.t1 |
33107 | CDS | 16456 | 16576 | 16456 | ID=cds.MS.gene045570.t1;Parent=MS.gene045570.t1 |
33107 | exon | 16668 | 16727 | 16668 | ID=MS.gene045570.t1.exon4;Parent=MS.gene045570.t1 |
33107 | CDS | 16668 | 16727 | 16668 | ID=cds.MS.gene045570.t1;Parent=MS.gene045570.t1 |
33107 | exon | 16851 | 16918 | 16851 | ID=MS.gene045570.t1.exon5;Parent=MS.gene045570.t1 |
33107 | CDS | 16851 | 16918 | 16851 | ID=cds.MS.gene045570.t1;Parent=MS.gene045570.t1 |
33107 | exon | 17093 | 17135 | 17093 | ID=MS.gene045570.t1.exon6;Parent=MS.gene045570.t1 |
33107 | CDS | 17093 | 17135 | 17093 | ID=cds.MS.gene045570.t1;Parent=MS.gene045570.t1 |
33107 | exon | 17270 | 17335 | 17270 | ID=MS.gene045570.t1.exon7;Parent=MS.gene045570.t1 |
33107 | CDS | 17270 | 17335 | 17270 | ID=cds.MS.gene045570.t1;Parent=MS.gene045570.t1 |
33107 | exon | 17449 | 17487 | 17449 | ID=MS.gene045570.t1.exon8;Parent=MS.gene045570.t1 |
33107 | CDS | 17449 | 17487 | 17449 | ID=cds.MS.gene045570.t1;Parent=MS.gene045570.t1 |
33107 | exon | 17577 | 17659 | 17577 | ID=MS.gene045570.t1.exon9;Parent=MS.gene045570.t1 |
33107 | CDS | 17577 | 17659 | 17577 | ID=cds.MS.gene045570.t1;Parent=MS.gene045570.t1 |
33107 | exon | 19030 | 19144 | 19030 | ID=MS.gene045570.t1.exon10;Parent=MS.gene045570.t1 |
33107 | CDS | 19030 | 19144 | 19030 | ID=cds.MS.gene045570.t1;Parent=MS.gene045570.t1 |
33107 | exon | 19287 | 19361 | 19287 | ID=MS.gene045570.t1.exon11;Parent=MS.gene045570.t1 |
33107 | CDS | 19287 | 19361 | 19287 | ID=cds.MS.gene045570.t1;Parent=MS.gene045570.t1 |
33107 | exon | 19595 | 19753 | 19595 | ID=MS.gene045570.t1.exon12;Parent=MS.gene045570.t1 |
33107 | CDS | 19595 | 19753 | 19595 | ID=cds.MS.gene045570.t1;Parent=MS.gene045570.t1 |
33107 | exon | 21297 | 21404 | 21297 | ID=MS.gene045570.t1.exon13;Parent=MS.gene045570.t1 |
33107 | CDS | 21297 | 21404 | 21297 | ID=cds.MS.gene045570.t1;Parent=MS.gene045570.t1 |
33107 | exon | 21503 | 21607 | 21503 | ID=MS.gene045570.t1.exon14;Parent=MS.gene045570.t1 |
33107 | CDS | 21503 | 21607 | 21503 | ID=cds.MS.gene045570.t1;Parent=MS.gene045570.t1 |
33107 | exon | 21700 | 21840 | 21700 | ID=MS.gene045570.t1.exon15;Parent=MS.gene045570.t1 |
33107 | CDS | 21700 | 21840 | 21700 | ID=cds.MS.gene045570.t1;Parent=MS.gene045570.t1 |
33107 | exon | 21926 | 22030 | 21926 | ID=MS.gene045570.t1.exon16;Parent=MS.gene045570.t1 |
33107 | CDS | 21926 | 22030 | 21926 | ID=cds.MS.gene045570.t1;Parent=MS.gene045570.t1 |
33107 | exon | 22122 | 22343 | 22122 | ID=MS.gene045570.t1.exon17;Parent=MS.gene045570.t1 |
33107 | CDS | 22122 | 22343 | 22122 | ID=cds.MS.gene045570.t1;Parent=MS.gene045570.t1 |
33107 | exon | 22556 | 22669 | 22556 | ID=MS.gene045570.t1.exon18;Parent=MS.gene045570.t1 |
33107 | CDS | 22556 | 22669 | 22556 | ID=cds.MS.gene045570.t1;Parent=MS.gene045570.t1 |
33107 | exon | 22764 | 22979 | 22764 | ID=MS.gene045570.t1.exon19;Parent=MS.gene045570.t1 |
33107 | CDS | 22764 | 22979 | 22764 | ID=cds.MS.gene045570.t1;Parent=MS.gene045570.t1 |
33107 | exon | 23147 | 23206 | 23147 | ID=MS.gene045570.t1.exon20;Parent=MS.gene045570.t1 |
33107 | CDS | 23147 | 23206 | 23147 | ID=cds.MS.gene045570.t1;Parent=MS.gene045570.t1 |
33107 | exon | 23290 | 23403 | 23290 | ID=MS.gene045570.t1.exon21;Parent=MS.gene045570.t1 |
33107 | CDS | 23290 | 23403 | 23290 | ID=cds.MS.gene045570.t1;Parent=MS.gene045570.t1 |
33107 | exon | 23483 | 23568 | 23483 | ID=MS.gene045570.t1.exon22;Parent=MS.gene045570.t1 |
33107 | CDS | 23483 | 23568 | 23483 | ID=cds.MS.gene045570.t1;Parent=MS.gene045570.t1 |
33107 | exon | 23715 | 23823 | 23715 | ID=MS.gene045570.t1.exon23;Parent=MS.gene045570.t1 |
33107 | CDS | 23715 | 23823 | 23715 | ID=cds.MS.gene045570.t1;Parent=MS.gene045570.t1 |
33107 | exon | 23903 | 24081 | 23903 | ID=MS.gene045570.t1.exon24;Parent=MS.gene045570.t1 |
33107 | CDS | 23903 | 24081 | 23903 | ID=cds.MS.gene045570.t1;Parent=MS.gene045570.t1 |
33107 | exon | 24165 | 24237 | 24165 | ID=MS.gene045570.t1.exon25;Parent=MS.gene045570.t1 |
33107 | CDS | 24165 | 24237 | 24165 | ID=cds.MS.gene045570.t1;Parent=MS.gene045570.t1 |
Gene Sequence |
Protein sequence |