Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006626.t1 | XP_003607505.1 | 99.7 | 886 | 3 | 0 | 1 | 886 | 1 | 886 | 0.00E+00 | 1588.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006626.t1 | Q9SIV2 | 81.7 | 897 | 147 | 4 | 1 | 886 | 1 | 891 | 0.0e+00 | 1298.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006626.t1 | G7JTX3 | 99.7 | 886 | 3 | 0 | 1 | 886 | 1 | 886 | 0.0e+00 | 1588.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006626.t1 | MTR_4g078780 | 99.661 | 886 | 3 | 0 | 1 | 886 | 1 | 886 | 0.0 | 1815 |
| MS.gene006626.t1 | MTR_4g078780 | 99.549 | 886 | 3 | 1 | 1 | 886 | 1 | 885 | 0.0 | 1808 |
| MS.gene006626.t1 | MTR_4g078780 | 99.739 | 767 | 2 | 0 | 1 | 767 | 1 | 767 | 0.0 | 1571 |
| MS.gene006626.t1 | MTR_1g058950 | 83.333 | 96 | 16 | 0 | 784 | 879 | 4 | 99 | 2.76e-48 | 166 |
| MS.gene006626.t1 | MTR_0265s0020 | 87.719 | 57 | 7 | 0 | 823 | 879 | 145 | 201 | 3.32e-26 | 107 |
| MS.gene006626.t1 | MTR_8g106120 | 22.622 | 473 | 300 | 14 | 365 | 815 | 379 | 807 | 7.31e-15 | 79.7 |
| MS.gene006626.t1 | MTR_8g106120 | 22.622 | 473 | 300 | 14 | 365 | 815 | 157 | 585 | 8.34e-15 | 79.3 |
| MS.gene006626.t1 | MTR_2g067250 | 22.410 | 473 | 301 | 14 | 365 | 815 | 377 | 805 | 5.66e-14 | 76.6 |
| MS.gene006626.t1 | MTR_8g106120 | 22.535 | 355 | 237 | 8 | 365 | 709 | 379 | 705 | 3.10e-11 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006626.t1 | AT2G20580 | 83.501 | 897 | 131 | 4 | 1 | 886 | 1 | 891 | 0.0 | 1510 |
| MS.gene006626.t1 | AT4G28470 | 80.851 | 893 | 156 | 3 | 3 | 886 | 5 | 891 | 0.0 | 1478 |
| MS.gene006626.t1 | AT4G08140 | 80.000 | 70 | 14 | 0 | 51 | 120 | 2 | 71 | 2.50e-30 | 115 |
| MS.gene006626.t1 | AT1G04810 | 22.766 | 470 | 304 | 14 | 365 | 815 | 377 | 806 | 2.40e-14 | 78.2 |
| MS.gene006626.t1 | AT2G32730 | 22.766 | 470 | 304 | 14 | 365 | 815 | 377 | 806 | 2.64e-14 | 77.8 |
Find 221 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTTATGGTGTCAGAAATT+TGG | 0.163690 | 4.4:+31927652 | MS.gene006626:intron |
| GACTAGAATTGGTGCAATTA+TGG | 0.180764 | 4.4:+31933112 | MS.gene006626:CDS |
| TTGACAAAACAAACTTTAAA+AGG | 0.192273 | 4.4:+31928182 | MS.gene006626:CDS |
| GGCCTTGGTCTTCTTTATCT+TGG | 0.200767 | 4.4:+31933456 | MS.gene006626:CDS |
| CATGCAGGTGCAAAATCTTT+TGG | 0.202835 | 4.4:+31933898 | MS.gene006626:intron |
| AAAACCTCACCTGCTCATTC+TGG | 0.227874 | 4.4:-31933160 | None:intergenic |
| TAAAGGACAATCCAGATTAT+AGG | 0.228060 | 4.4:+31935349 | MS.gene006626:CDS |
| ACCCCTGTTCTCCTGGCTGC+TGG | 0.245592 | 4.4:+31935175 | MS.gene006626:CDS |
| GCTGGTGCTGGCGCCGTTGC+CGG | 0.280560 | 4.4:-31926626 | None:intergenic |
| TCTTCAAGTAGTGGTTCTTC+TGG | 0.284064 | 4.4:+31932672 | MS.gene006626:CDS |
| AGCAATCATATTTACATTGA+TGG | 0.285349 | 4.4:+31933383 | MS.gene006626:CDS |
| GCCTTCACTGCAATTGCATT+GGG | 0.289158 | 4.4:+31933321 | MS.gene006626:CDS |
| TGCCCAAGGTCTTGTACATT+TGG | 0.290221 | 4.4:+31934632 | MS.gene006626:CDS |
| GCATTTGTTAATGCCGGATT+TGG | 0.293129 | 4.4:+31932520 | MS.gene006626:CDS |
| GCGCCGTTGCCGGCGCGGTT+AGG | 0.294433 | 4.4:-31926616 | None:intergenic |
| TGTCATTGCTGGTGCATTAC+TGG | 0.297812 | 4.4:+31932916 | MS.gene006626:CDS |
| CTAGGTTCAGAGGGAGATAT+TGG | 0.298113 | 4.4:+31927446 | MS.gene006626:CDS |
| TCTTAGGCACATTTGCTTGA+TGG | 0.300355 | 4.4:+31932433 | MS.gene006626:intron |
| TTCTCCTGGCTGCTGGGGAT+AGG | 0.305991 | 4.4:+31935182 | MS.gene006626:CDS |
| TTCGTCATTGCAGAAGTATT+TGG | 0.307151 | 4.4:+31927229 | MS.gene006626:intron |
| TATGGCGGAATCAGAGTTAA+AGG | 0.315185 | 4.4:+31927129 | MS.gene006626:CDS |
| CGTGCAGTCAGATGAAGATT+TGG | 0.320246 | 4.4:+31926805 | MS.gene006626:intron |
| ATTTGATCAGGTCAATGTTA+TGG | 0.321936 | 4.4:+31934278 | MS.gene006626:intron |
| AATGCAATTTGCAGTGCATT+TGG | 0.325383 | 4.4:-31929682 | None:intergenic |
| AAAGGACAATCCAGATTATA+GGG | 0.325952 | 4.4:+31935350 | MS.gene006626:CDS |
| TTTGGCGGTGCCGCTGGTGC+TGG | 0.327421 | 4.4:-31926638 | None:intergenic |
| TCCCCAGCAGCCAGGAGAAC+AGG | 0.334078 | 4.4:-31935178 | None:intergenic |
| TGTTCTCTACTTCCTCGTTT+TGG | 0.335578 | 4.4:+31934934 | MS.gene006626:CDS |
| ATTGGTGCAATTATGGGATT+AGG | 0.338723 | 4.4:+31933119 | MS.gene006626:CDS |
| CCCCTGTTCTCCTGGCTGCT+GGG | 0.345055 | 4.4:+31935176 | MS.gene006626:CDS |
| CCCCTATCACCAATTCTTGA+AGG | 0.345401 | 4.4:+31935315 | MS.gene006626:CDS |
| ACTAGAATTGGTGCAATTAT+GGG | 0.345863 | 4.4:+31933113 | MS.gene006626:CDS |
| CTCCCTCAGCAGACATTGTA+AGG | 0.346118 | 4.4:-31927274 | None:intergenic |
| CAAATATCCTTCACTTAACT+TGG | 0.350252 | 4.4:-31930253 | None:intergenic |
| TGAAAGCCGGTGATTGTCTT+AGG | 0.351647 | 4.4:-31935142 | None:intergenic |
| ATTACAAAACCTTCAAGAAT+TGG | 0.353080 | 4.4:-31935324 | None:intergenic |
| TGCACCTTGTATATATCTTC+AGG | 0.356157 | 4.4:-31930315 | None:intergenic |
| GGCTGACATATTATCAGTAT+TGG | 0.356961 | 4.4:+31927250 | MS.gene006626:CDS |
| GTTATCTCCTTGGGTCTAAT+AGG | 0.358044 | 4.4:+31934437 | MS.gene006626:CDS |
| GCCTTGGTCTTCTTTATCTT+GGG | 0.359647 | 4.4:+31933457 | MS.gene006626:CDS |
| GTTGCCGGCGCGGTTAGGTT+CGG | 0.361415 | 4.4:-31926611 | None:intergenic |
| GTAGCAATGGCTGAAGAATT+AGG | 0.361899 | 4.4:+31933989 | MS.gene006626:CDS |
| GCCCAAGGTCTTGTACATTT+GGG | 0.363986 | 4.4:+31934633 | MS.gene006626:CDS |
| TGACATGGTTATCATTACTA+TGG | 0.373993 | 4.4:-31932898 | None:intergenic |
| TGCCTTCACTGCAATTGCAT+TGG | 0.375145 | 4.4:+31933320 | MS.gene006626:CDS |
| GAAGATAGTTCGACTAGAAT+TGG | 0.377228 | 4.4:+31933101 | MS.gene006626:CDS |
| GACTAGTGCTGCTGCAAGTC+TGG | 0.377954 | 4.4:+31932728 | MS.gene006626:CDS |
| GCCTCTATCAGTGCCTGTTC+GGG | 0.382032 | 4.4:+31935081 | MS.gene006626:CDS |
| TAAGGCATATTATGAAACTA+TGG | 0.383151 | 4.4:+31927111 | MS.gene006626:CDS |
| ACAAACAATGCTCGAATTGC+CGG | 0.384804 | 4.4:+31934467 | MS.gene006626:CDS |
| TCATGTGCCTATGCTGGAAC+TGG | 0.385983 | 4.4:+31933775 | MS.gene006626:CDS |
| AGCCTCTATCAGTGCCTGTT+CGG | 0.386811 | 4.4:+31935080 | MS.gene006626:CDS |
| TTGCCGGCGCGGTTAGGTTC+GGG | 0.387598 | 4.4:-31926610 | None:intergenic |
| CGAAGAACGAGAAGTGTTGC+AGG | 0.387775 | 4.4:+31930215 | MS.gene006626:CDS |
| TTCGTCTTTGGCGGTGCCGC+TGG | 0.390264 | 4.4:-31926644 | None:intergenic |
| CGACTTCTCCCTCTTGGCCT+TGG | 0.391180 | 4.4:+31933441 | MS.gene006626:CDS |
| CATGGGGACATGAGTATGTT+AGG | 0.392382 | 4.4:+31927471 | MS.gene006626:CDS |
| TCATTCTACCCCTGTTCTCC+TGG | 0.393262 | 4.4:+31935168 | MS.gene006626:CDS |
| GTAGTGGTTCTTCTGGAAAC+TGG | 0.395865 | 4.4:+31932679 | MS.gene006626:CDS |
| TTAGAACATCTTCTACAGTA+TGG | 0.397139 | 4.4:+31934034 | MS.gene006626:CDS |
| TCTCCTGGCTGCTGGGGATA+GGG | 0.401494 | 4.4:+31935183 | MS.gene006626:CDS |
| CATCACTCTTCCCTATAATC+TGG | 0.405215 | 4.4:-31935360 | None:intergenic |
| AACCTTCAAGAATTGGTGAT+AGG | 0.407353 | 4.4:-31935317 | None:intergenic |
| CTTGATGGCCGTGCAAGTGC+TGG | 0.408444 | 4.4:+31932448 | MS.gene006626:CDS |
| TCTTCTTTATCTTGGGAAGC+AGG | 0.420669 | 4.4:+31933464 | MS.gene006626:CDS |
| ACTGCTTGGCCAACCCGAAC+AGG | 0.423439 | 4.4:-31935094 | None:intergenic |
| GTTGTATGTTGAGAGGGTTC+AGG | 0.424586 | 4.4:+31926847 | MS.gene006626:CDS |
| CGAGCAGTTCCTCTGGCACT+TGG | 0.426143 | 4.4:+31934073 | MS.gene006626:CDS |
| ACAGGCAGCAGTTATCTCCT+TGG | 0.429907 | 4.4:+31934427 | MS.gene006626:intron |
| CACCAAGGTCCTGCAGTCCT+TGG | 0.430705 | 4.4:+31933956 | MS.gene006626:CDS |
| ACTGCAAATTGCATTGTTCA+TGG | 0.433433 | 4.4:+31929690 | MS.gene006626:CDS |
| TGTTAATGCCGGATTTGGTC+AGG | 0.436038 | 4.4:+31932525 | MS.gene006626:CDS |
| TGCGGCAGCTTCGTCTTTGG+CGG | 0.436686 | 4.4:-31926653 | None:intergenic |
| GTTAATGCATTTGTTAATGC+CGG | 0.439292 | 4.4:+31932514 | MS.gene006626:CDS |
| CGTAGAAACTTCAGTGGCTT+GGG | 0.439539 | 4.4:-31927070 | None:intergenic |
| CTCCCTCTGAACCTAGTAAT+CGG | 0.440688 | 4.4:-31927439 | None:intergenic |
| CTTACGCGACTTCTCCCTCT+TGG | 0.441492 | 4.4:+31933435 | MS.gene006626:CDS |
| ATCATGGCTAAGTCTGCTTA+AGG | 0.441554 | 4.4:-31934304 | None:intergenic |
| GAAGATCGAGAGCGAAGATC+TGG | 0.445605 | 4.4:+31926681 | MS.gene006626:CDS |
| AAACCTCACCTGCTCATTCT+GGG | 0.446754 | 4.4:-31933159 | None:intergenic |
| TGAAACATACACAAAATAGA+AGG | 0.448647 | 4.4:-31934532 | None:intergenic |
| AATGATAACCATGTCATTGC+TGG | 0.449019 | 4.4:+31932905 | MS.gene006626:CDS |
| CAGGCAGCAGTTATCTCCTT+GGG | 0.449890 | 4.4:+31934428 | MS.gene006626:intron |
| GGCAACGGCGCCAGCACCAG+CGG | 0.456358 | 4.4:+31926628 | MS.gene006626:CDS |
| AGCAGTAGACGTTGTTGGAC+AGG | 0.459860 | 4.4:+31935111 | MS.gene006626:CDS |
| TCATTGTACCTGACCAAATC+CGG | 0.459928 | 4.4:-31932533 | None:intergenic |
| AGAGGGAGAAGTCGCGTAAG+AGG | 0.462942 | 4.4:-31933432 | None:intergenic |
| CTACTATCATGTGCCTATGC+TGG | 0.463677 | 4.4:+31933769 | MS.gene006626:CDS |
| AATGTCTGCTGAGGGAGAAC+GGG | 0.467324 | 4.4:+31927280 | MS.gene006626:CDS |
| TTACTATGGGATGTTGACTC+TGG | 0.470974 | 4.4:+31932851 | MS.gene006626:CDS |
| GCCACATTACGGTACTCTTA+AGG | 0.471860 | 4.4:+31927093 | MS.gene006626:CDS |
| ATCAAAAGATCAACAGCCTC+TGG | 0.472093 | 4.4:-31928035 | None:intergenic |
| TCCCAAATGTACAAGACCTT+GGG | 0.474672 | 4.4:-31934634 | None:intergenic |
| ATCACGTCAAGCGAAGCTTT+AGG | 0.474727 | 4.4:-31933297 | None:intergenic |
| ACCTTCAAGAATTGGTGATA+GGG | 0.476467 | 4.4:-31935316 | None:intergenic |
| CAGAGGGAGATATTGGTTCA+TGG | 0.477824 | 4.4:+31927453 | MS.gene006626:CDS |
| AGTCTCAAATACCGATTACT+AGG | 0.479190 | 4.4:+31927428 | MS.gene006626:CDS |
| TTTGGCTTTGAAGCAACAGC+TGG | 0.479199 | 4.4:+31926823 | MS.gene006626:CDS |
| TGCTGGCGCCGTTGCCGGCG+CGG | 0.483349 | 4.4:-31926621 | None:intergenic |
| AGAGCAACCTTCTGCAACCC+GGG | 0.485765 | 4.4:-31926878 | None:intergenic |
| CCGTAGAAACTTCAGTGGCT+TGG | 0.486666 | 4.4:-31927071 | None:intergenic |
| AAGTTTCTACGGCCACATTA+CGG | 0.488041 | 4.4:+31927082 | MS.gene006626:CDS |
| TTCCCAAATGTACAAGACCT+TGG | 0.489170 | 4.4:-31934635 | None:intergenic |
| CTGCCCTATCCCCAGCAGCC+AGG | 0.494849 | 4.4:-31935186 | None:intergenic |
| ATTAAAAGTCTTTGAAACTT+CGG | 0.496334 | 4.4:-31933716 | None:intergenic |
| AGAGGGAGATATTGGTTCAT+GGG | 0.496959 | 4.4:+31927454 | MS.gene006626:CDS |
| GCCCAATGCAATTGCAGTGA+AGG | 0.498300 | 4.4:-31933322 | None:intergenic |
| TCCAATACTAGCATATCATC+TGG | 0.498885 | 4.4:-31929622 | None:intergenic |
| TATGGTGTCAGAAATTTGGC+TGG | 0.499427 | 4.4:+31927656 | MS.gene006626:intron |
| TATTCGCCGAGCAGTTCCTC+TGG | 0.500504 | 4.4:+31934066 | MS.gene006626:CDS |
| TGCAGTCCTTGGAATTGCTA+TGG | 0.502997 | 4.4:+31933967 | MS.gene006626:CDS |
| CAATGTCTGCTGAGGGAGAA+CGG | 0.504450 | 4.4:+31927279 | MS.gene006626:CDS |
| GTCATTGCTGGTGCATTACT+GGG | 0.505397 | 4.4:+31932917 | MS.gene006626:CDS |
| ACACAATAGCTTTCATATCA+AGG | 0.505784 | 4.4:-31934895 | None:intergenic |
| GGTCTTGTACATTTGGGAAA+GGG | 0.507186 | 4.4:+31934639 | MS.gene006626:CDS |
| GATCGGAGTGAGTCAGAGTT+GGG | 0.508316 | 4.4:+31933405 | MS.gene006626:CDS |
| CCCTGTTCTCCTGGCTGCTG+GGG | 0.508335 | 4.4:+31935177 | MS.gene006626:CDS |
| GGATTAGGAATTGCATATGC+TGG | 0.510069 | 4.4:+31933134 | MS.gene006626:CDS |
| AATAGTTGCCTTTCACATGA+AGG | 0.510708 | 4.4:+31927888 | MS.gene006626:CDS |
| AAGAGCAACCTTCTGCAACC+CGG | 0.510865 | 4.4:-31926879 | None:intergenic |
| GATATGAAAGCTATTGTGTT+GGG | 0.511246 | 4.4:+31934899 | MS.gene006626:CDS |
| TATATATCTTCAGGGGACTT+AGG | 0.511864 | 4.4:-31930306 | None:intergenic |
| GCACCTTGTATATATCTTCA+GGG | 0.512615 | 4.4:-31930314 | None:intergenic |
| ACCCGAACAGGCACTGATAG+AGG | 0.514416 | 4.4:-31935082 | None:intergenic |
| TGGCTTGGGCACTGAAGTCA+TGG | 0.515550 | 4.4:-31927056 | None:intergenic |
| GGATCGGAGTGAGTCAGAGT+TGG | 0.515747 | 4.4:+31933404 | MS.gene006626:CDS |
| ACCAGATGATATGCTAGTAT+TGG | 0.515944 | 4.4:+31929621 | MS.gene006626:CDS |
| TCATATTTACATTGATGGAT+CGG | 0.517102 | 4.4:+31933388 | MS.gene006626:CDS |
| GCTTTAGGATCACTCAGAAT+AGG | 0.517639 | 4.4:-31933282 | None:intergenic |
| TGCATTGGGCTTGATTTACG+TGG | 0.518309 | 4.4:+31933335 | MS.gene006626:CDS |
| CAACTTCTGAATCAGTATCA+TGG | 0.519781 | 4.4:-31934320 | None:intergenic |
| GAACCTAACCGCGCCGGCAA+CGG | 0.523030 | 4.4:+31926613 | MS.gene006626:CDS |
| CTCCATGACTTCAATATCAC+GGG | 0.523436 | 4.4:-31930283 | None:intergenic |
| CTTTCAGTTACGATACAAGT+TGG | 0.527671 | 4.4:+31933257 | MS.gene006626:intron |
| TCCTTGGGTCTAATAGGCGC+TGG | 0.528692 | 4.4:+31934443 | MS.gene006626:CDS |
| CCCCAGCAGCCAGGAGAACA+GGG | 0.529499 | 4.4:-31935177 | None:intergenic |
| GCATCAGATTCTTCAAGTAG+TGG | 0.529733 | 4.4:+31932663 | MS.gene006626:CDS |
| GTCCAACAACGTCTACTGCT+TGG | 0.531076 | 4.4:-31935108 | None:intergenic |
| AAAGAAGACCAAGGCCAAGA+GGG | 0.534797 | 4.4:-31933449 | None:intergenic |
| GGCGCCAATTGATGATCTCA+TGG | 0.535953 | 4.4:+31927852 | MS.gene006626:CDS |
| ATTGTTCATGGATAACCTGC+TGG | 0.537779 | 4.4:+31929702 | MS.gene006626:CDS |
| TGAAAGATTGCGAAGCATGC+CGG | 0.538412 | 4.4:-31934486 | None:intergenic |
| CACTTGCACCAGCACTTGCA+CGG | 0.542212 | 4.4:-31932456 | None:intergenic |
| AGGGTTCAGGATACTGACCC+CGG | 0.543270 | 4.4:+31926860 | MS.gene006626:CDS |
| TCATGGAGCTTGTAGAAGTA+CGG | 0.544317 | 4.4:-31927039 | None:intergenic |
| TGCCCGTGATATTGAAGTCA+TGG | 0.546113 | 4.4:+31930281 | MS.gene006626:CDS |
| GGCCAAGCAGTAGACGTTGT+TGG | 0.547192 | 4.4:+31935106 | MS.gene006626:CDS |
| AGTTCCATGAGATCATCAAT+TGG | 0.550068 | 4.4:-31927856 | None:intergenic |
| AAGACACGGTCAGAATGATA+AGG | 0.550929 | 4.4:-31934678 | None:intergenic |
| CTATCAGTGCCTGTTCGGGT+TGG | 0.551095 | 4.4:+31935085 | MS.gene006626:CDS |
| GCTGGTGCATTACTGGGAGT+TGG | 0.551767 | 4.4:+31932923 | MS.gene006626:CDS |
| TTCCAAGGACTGCAGGACCT+TGG | 0.552548 | 4.4:-31933958 | None:intergenic |
| GATGTTGTTGACTGTGGATG+AGG | 0.554247 | 4.4:+31935051 | MS.gene006626:CDS |
| AGGTCTTGTACATTTGGGAA+AGG | 0.555099 | 4.4:+31934638 | MS.gene006626:CDS |
| AACAATTCCAAGTTAAGTGA+AGG | 0.556109 | 4.4:+31930246 | MS.gene006626:CDS |
| CCTTCAAGAATTGGTGATAG+GGG | 0.557370 | 4.4:-31935315 | None:intergenic |
| TACTGACCCCGGGTTGCAGA+AGG | 0.557812 | 4.4:+31926871 | MS.gene006626:CDS |
| TTGTAGGCAATGGCACTCCT+TGG | 0.558145 | 4.4:+31933062 | MS.gene006626:intron |
| TGCTGGTTCCCAGAATGAGC+AGG | 0.560900 | 4.4:+31933151 | MS.gene006626:CDS |
| CCAAGCCACTGAAGTTTCTA+CGG | 0.562286 | 4.4:+31927071 | MS.gene006626:CDS |
| CGGTTAGGTTCGGGAGCCAT+CGG | 0.562440 | 4.4:-31926601 | None:intergenic |
| GTAGAAGATGTTCTAACGAT+CGG | 0.567757 | 4.4:-31934027 | None:intergenic |
| TCCACAGTCAACAACATCCT+CGG | 0.571268 | 4.4:-31935046 | None:intergenic |
| TCTTTCAAGCTATTACTACA+AGG | 0.573652 | 4.4:+31934502 | MS.gene006626:CDS |
| AGATAATACCTTCATGTGAA+AGG | 0.575016 | 4.4:-31927896 | None:intergenic |
| ACTAGCATATCATCTGGTCC+AGG | 0.575933 | 4.4:-31929616 | None:intergenic |
| GGTCGTCCTAAGACAATCAC+CGG | 0.576068 | 4.4:+31935136 | MS.gene006626:CDS |
| AGCTGGAGTTGTATGTTGAG+AGG | 0.576584 | 4.4:+31926840 | MS.gene006626:CDS |
| GCTGGAGTTGTATGTTGAGA+GGG | 0.577745 | 4.4:+31926841 | MS.gene006626:CDS |
| ACATACACAAAATAGAAGGC+TGG | 0.579470 | 4.4:-31934528 | None:intergenic |
| TGGAATTGCTATGGTAGCAA+TGG | 0.582283 | 4.4:+31933976 | MS.gene006626:CDS |
| GGCCCTTACAATGTCTGCTG+AGG | 0.582711 | 4.4:+31927271 | MS.gene006626:CDS |
| GTAGACGTTGTTGGACAGGC+AGG | 0.584047 | 4.4:+31935115 | MS.gene006626:CDS |
| GCTCCATGACTTCAATATCA+CGG | 0.591509 | 4.4:-31930284 | None:intergenic |
| TGATATGAAAGCTATTGTGT+TGG | 0.593763 | 4.4:+31934898 | MS.gene006626:CDS |
| GCATTGGGCTTGATTTACGT+GGG | 0.594648 | 4.4:+31933336 | MS.gene006626:CDS |
| TGTATCTGACAAGTTCAGCT+AGG | 0.595489 | 4.4:+31928212 | MS.gene006626:CDS |
| GCCCTTACAATGTCTGCTGA+GGG | 0.595569 | 4.4:+31927272 | MS.gene006626:CDS |
| CTACAGGTGCGGATTGCCCA+AGG | 0.595817 | 4.4:+31934618 | MS.gene006626:intron |
| TACTGATTCAGAAGTTGCAA+TGG | 0.600180 | 4.4:+31934326 | MS.gene006626:CDS |
| TCAAGAATATGCAAAACGAC+AGG | 0.600683 | 4.4:+31927688 | MS.gene006626:CDS |
| AACATTCCCAGTTCCAGCAT+AGG | 0.601552 | 4.4:-31933782 | None:intergenic |
| GAGGGAGATATTGGTTCATG+GGG | 0.601739 | 4.4:+31927455 | MS.gene006626:CDS |
| ATACCGATTACTAGGTTCAG+AGG | 0.603273 | 4.4:+31927436 | MS.gene006626:CDS |
| TCCAGCGCCTATTAGACCCA+AGG | 0.605628 | 4.4:-31934444 | None:intergenic |
| GTCCCCTGAAGATATATACA+AGG | 0.607347 | 4.4:+31930311 | MS.gene006626:CDS |
| TACCGATTACTAGGTTCAGA+GGG | 0.611712 | 4.4:+31927437 | MS.gene006626:CDS |
| ATAGCAATTCCAAGGACTGC+AGG | 0.612981 | 4.4:-31933965 | None:intergenic |
| TGGAACTGGGAATGTTCTCA+AGG | 0.617089 | 4.4:+31933789 | MS.gene006626:CDS |
| TTGCTACCATAGCAATTCCA+AGG | 0.618346 | 4.4:-31933973 | None:intergenic |
| TAAAGAAGACCAAGGCCAAG+AGG | 0.621416 | 4.4:-31933450 | None:intergenic |
| CACAGCAGACCAAGTGCCAG+AGG | 0.629366 | 4.4:-31934082 | None:intergenic |
| GCCTTAAGAGTACCGTAATG+TGG | 0.634211 | 4.4:-31927094 | None:intergenic |
| CATGTGCCTATGCTGGAACT+GGG | 0.635630 | 4.4:+31933776 | MS.gene006626:CDS |
| GTAATGCACCAGCAATGACA+TGG | 0.635873 | 4.4:-31932913 | None:intergenic |
| TGTTCACAACATCTTGACAA+AGG | 0.637361 | 4.4:+31933926 | MS.gene006626:CDS |
| GGGTTCAGGATACTGACCCC+GGG | 0.638406 | 4.4:+31926861 | MS.gene006626:CDS |
| CCCAGCAGCCAGGAGAACAG+GGG | 0.638606 | 4.4:-31935176 | None:intergenic |
| GCAGCATAATGCTGAACCAG+AGG | 0.639545 | 4.4:+31928019 | MS.gene006626:intron |
| GGTAGAATGAGTCTGAAAGC+CGG | 0.642327 | 4.4:-31935155 | None:intergenic |
| GCTGTGTATATCAAACCCAA+AGG | 0.645766 | 4.4:+31934099 | MS.gene006626:CDS |
| CATTAACAAAAGTAGCAGCA+AGG | 0.648095 | 4.4:-31932498 | None:intergenic |
| TGAAGAATTAGGTGTTGAGA+TGG | 0.648729 | 4.4:+31934000 | MS.gene006626:CDS |
| GCTCCCGAACCTAACCGCGC+CGG | 0.652018 | 4.4:+31926607 | MS.gene006626:CDS |
| AGGTTGCTCTTGAAAGCATG+AGG | 0.652603 | 4.4:+31926891 | MS.gene006626:CDS |
| GTAACAACAGGAAAGTGTTG+AGG | 0.652898 | 4.4:+31933687 | MS.gene006626:intron |
| TTACGTGGGTTCTTGCAATG+AGG | 0.658349 | 4.4:+31933350 | MS.gene006626:CDS |
| TGTGCATTGATAGAGTGAAG+AGG | 0.660245 | 4.4:+31927831 | MS.gene006626:intron |
| CACCTTGTATATATCTTCAG+GGG | 0.666070 | 4.4:-31930313 | None:intergenic |
| TCCCTCAGCAGACATTGTAA+GGG | 0.666227 | 4.4:-31927273 | None:intergenic |
| GAGACTCAAACAAACCTGCA+TGG | 0.668674 | 4.4:-31934957 | None:intergenic |
| GCCGAGGATGTTGTTGACTG+TGG | 0.669421 | 4.4:+31935045 | MS.gene006626:intron |
| GGCATATTATGAAACTATGG+CGG | 0.673217 | 4.4:+31927114 | MS.gene006626:CDS |
| GACAAAGGTGAGATGCACCA+AGG | 0.682675 | 4.4:+31933941 | MS.gene006626:CDS |
| AAACCTGCATGGCCAAAACG+AGG | 0.682882 | 4.4:-31934946 | None:intergenic |
| GGTCTTGCTGACAGCATGTG+AGG | 0.684340 | 4.4:+31929852 | MS.gene006626:intron |
| GAGCAACCTTCTGCAACCCG+GGG | 0.688966 | 4.4:-31926877 | None:intergenic |
| CAAGTGCCAGAGGAACTGCT+CGG | 0.690748 | 4.4:-31934072 | None:intergenic |
| TCCCAAGATAAAGAAGACCA+AGG | 0.693423 | 4.4:-31933458 | None:intergenic |
| TGTGGCCGTAGAAACTTCAG+TGG | 0.696714 | 4.4:-31927076 | None:intergenic |
| CTTACGGTGATAGTAAGACA+CGG | 0.711897 | 4.4:-31934692 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 31926604 | 31935380 | 31926604 | ID=MS.gene006626 |
| chr4.4 | mRNA | 31926604 | 31935380 | 31926604 | ID=MS.gene006626.t1;Parent=MS.gene006626 |
| chr4.4 | exon | 31926604 | 31926702 | 31926604 | ID=MS.gene006626.t1.exon1;Parent=MS.gene006626.t1 |
| chr4.4 | CDS | 31926604 | 31926702 | 31926604 | ID=cds.MS.gene006626.t1;Parent=MS.gene006626.t1 |
| chr4.4 | exon | 31926812 | 31926912 | 31926812 | ID=MS.gene006626.t1.exon2;Parent=MS.gene006626.t1 |
| chr4.4 | CDS | 31926812 | 31926912 | 31926812 | ID=cds.MS.gene006626.t1;Parent=MS.gene006626.t1 |
| chr4.4 | exon | 31927030 | 31927150 | 31927030 | ID=MS.gene006626.t1.exon3;Parent=MS.gene006626.t1 |
| chr4.4 | CDS | 31927030 | 31927150 | 31927030 | ID=cds.MS.gene006626.t1;Parent=MS.gene006626.t1 |
| chr4.4 | exon | 31927242 | 31927301 | 31927242 | ID=MS.gene006626.t1.exon4;Parent=MS.gene006626.t1 |
| chr4.4 | CDS | 31927242 | 31927301 | 31927242 | ID=cds.MS.gene006626.t1;Parent=MS.gene006626.t1 |
| chr4.4 | exon | 31927425 | 31927492 | 31927425 | ID=MS.gene006626.t1.exon5;Parent=MS.gene006626.t1 |
| chr4.4 | CDS | 31927425 | 31927492 | 31927425 | ID=cds.MS.gene006626.t1;Parent=MS.gene006626.t1 |
| chr4.4 | exon | 31927667 | 31927709 | 31927667 | ID=MS.gene006626.t1.exon6;Parent=MS.gene006626.t1 |
| chr4.4 | CDS | 31927667 | 31927709 | 31927667 | ID=cds.MS.gene006626.t1;Parent=MS.gene006626.t1 |
| chr4.4 | exon | 31927844 | 31927909 | 31927844 | ID=MS.gene006626.t1.exon7;Parent=MS.gene006626.t1 |
| chr4.4 | CDS | 31927844 | 31927909 | 31927844 | ID=cds.MS.gene006626.t1;Parent=MS.gene006626.t1 |
| chr4.4 | exon | 31928023 | 31928061 | 31928023 | ID=MS.gene006626.t1.exon8;Parent=MS.gene006626.t1 |
| chr4.4 | CDS | 31928023 | 31928061 | 31928023 | ID=cds.MS.gene006626.t1;Parent=MS.gene006626.t1 |
| chr4.4 | exon | 31928151 | 31928233 | 31928151 | ID=MS.gene006626.t1.exon9;Parent=MS.gene006626.t1 |
| chr4.4 | CDS | 31928151 | 31928233 | 31928151 | ID=cds.MS.gene006626.t1;Parent=MS.gene006626.t1 |
| chr4.4 | exon | 31929609 | 31929723 | 31929609 | ID=MS.gene006626.t1.exon10;Parent=MS.gene006626.t1 |
| chr4.4 | CDS | 31929609 | 31929723 | 31929609 | ID=cds.MS.gene006626.t1;Parent=MS.gene006626.t1 |
| chr4.4 | exon | 31929866 | 31929940 | 31929866 | ID=MS.gene006626.t1.exon11;Parent=MS.gene006626.t1 |
| chr4.4 | CDS | 31929866 | 31929940 | 31929866 | ID=cds.MS.gene006626.t1;Parent=MS.gene006626.t1 |
| chr4.4 | exon | 31930174 | 31930332 | 31930174 | ID=MS.gene006626.t1.exon12;Parent=MS.gene006626.t1 |
| chr4.4 | CDS | 31930174 | 31930332 | 31930174 | ID=cds.MS.gene006626.t1;Parent=MS.gene006626.t1 |
| chr4.4 | exon | 31932439 | 31932546 | 31932439 | ID=MS.gene006626.t1.exon13;Parent=MS.gene006626.t1 |
| chr4.4 | CDS | 31932439 | 31932546 | 31932439 | ID=cds.MS.gene006626.t1;Parent=MS.gene006626.t1 |
| chr4.4 | exon | 31932645 | 31932749 | 31932645 | ID=MS.gene006626.t1.exon14;Parent=MS.gene006626.t1 |
| chr4.4 | CDS | 31932645 | 31932749 | 31932645 | ID=cds.MS.gene006626.t1;Parent=MS.gene006626.t1 |
| chr4.4 | exon | 31932842 | 31932982 | 31932842 | ID=MS.gene006626.t1.exon15;Parent=MS.gene006626.t1 |
| chr4.4 | CDS | 31932842 | 31932982 | 31932842 | ID=cds.MS.gene006626.t1;Parent=MS.gene006626.t1 |
| chr4.4 | exon | 31933068 | 31933172 | 31933068 | ID=MS.gene006626.t1.exon16;Parent=MS.gene006626.t1 |
| chr4.4 | CDS | 31933068 | 31933172 | 31933068 | ID=cds.MS.gene006626.t1;Parent=MS.gene006626.t1 |
| chr4.4 | exon | 31933264 | 31933485 | 31933264 | ID=MS.gene006626.t1.exon17;Parent=MS.gene006626.t1 |
| chr4.4 | CDS | 31933264 | 31933485 | 31933264 | ID=cds.MS.gene006626.t1;Parent=MS.gene006626.t1 |
| chr4.4 | exon | 31933697 | 31933810 | 31933697 | ID=MS.gene006626.t1.exon18;Parent=MS.gene006626.t1 |
| chr4.4 | CDS | 31933697 | 31933810 | 31933697 | ID=cds.MS.gene006626.t1;Parent=MS.gene006626.t1 |
| chr4.4 | exon | 31933905 | 31934120 | 31933905 | ID=MS.gene006626.t1.exon19;Parent=MS.gene006626.t1 |
| chr4.4 | CDS | 31933905 | 31934120 | 31933905 | ID=cds.MS.gene006626.t1;Parent=MS.gene006626.t1 |
| chr4.4 | exon | 31934288 | 31934347 | 31934288 | ID=MS.gene006626.t1.exon20;Parent=MS.gene006626.t1 |
| chr4.4 | CDS | 31934288 | 31934347 | 31934288 | ID=cds.MS.gene006626.t1;Parent=MS.gene006626.t1 |
| chr4.4 | exon | 31934431 | 31934544 | 31934431 | ID=MS.gene006626.t1.exon21;Parent=MS.gene006626.t1 |
| chr4.4 | CDS | 31934431 | 31934544 | 31934431 | ID=cds.MS.gene006626.t1;Parent=MS.gene006626.t1 |
| chr4.4 | exon | 31934624 | 31934709 | 31934624 | ID=MS.gene006626.t1.exon22;Parent=MS.gene006626.t1 |
| chr4.4 | CDS | 31934624 | 31934709 | 31934624 | ID=cds.MS.gene006626.t1;Parent=MS.gene006626.t1 |
| chr4.4 | exon | 31934856 | 31934964 | 31934856 | ID=MS.gene006626.t1.exon23;Parent=MS.gene006626.t1 |
| chr4.4 | CDS | 31934856 | 31934964 | 31934856 | ID=cds.MS.gene006626.t1;Parent=MS.gene006626.t1 |
| chr4.4 | exon | 31935046 | 31935224 | 31935046 | ID=MS.gene006626.t1.exon24;Parent=MS.gene006626.t1 |
| chr4.4 | CDS | 31935046 | 31935224 | 31935046 | ID=cds.MS.gene006626.t1;Parent=MS.gene006626.t1 |
| chr4.4 | exon | 31935308 | 31935380 | 31935308 | ID=MS.gene006626.t1.exon25;Parent=MS.gene006626.t1 |
| chr4.4 | CDS | 31935308 | 31935380 | 31935308 | ID=cds.MS.gene006626.t1;Parent=MS.gene006626.t1 |
| Gene Sequence |
| Protein sequence |
