Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01066.t1 | XP_003593601.1 | 99.6 | 248 | 1 | 0 | 1 | 248 | 1 | 248 | 1.20E-131 | 479.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01066.t1 | P51430 | 92.6 | 242 | 18 | 0 | 1 | 242 | 1 | 242 | 3.6e-121 | 435.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01066.t1 | Q2HTS1 | 99.6 | 248 | 1 | 0 | 1 | 248 | 1 | 248 | 8.5e-132 | 479.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene01066 | MS.gene09046 | PPI |
| MS.gene01066 | MS.gene09187 | PPI |
| MS.gene01066 | MS.gene023381 | PPI |
| MS.gene01066 | MS.gene01449 | PPI |
| MS.gene31991 | MS.gene01066 | PPI |
| MS.gene01066 | MS.gene26343 | PPI |
| MS.gene01066 | MS.gene31991 | PPI |
| MS.gene01066 | MS.gene051272 | PPI |
| MS.gene01066 | MS.gene023037 | PPI |
| MS.gene01066 | MS.gene08259 | PPI |
| MS.gene01066 | MS.gene09188 | PPI |
| MS.gene01066 | MS.gene002470 | PPI |
| MS.gene01066 | MS.gene08260 | PPI |
| MS.gene01066 | MS.gene027347 | PPI |
| MS.gene01066 | MS.gene011048 | PPI |
| MS.gene01066 | MS.gene33828 | PPI |
| MS.gene01066 | MS.gene39485 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01066.t1 | MTR_2g014030 | 99.597 | 248 | 1 | 0 | 1 | 248 | 1 | 248 | 0.0 | 500 |
| MS.gene01066.t1 | MTR_4g088595 | 96.774 | 248 | 8 | 0 | 1 | 248 | 1 | 248 | 1.70e-176 | 485 |
| MS.gene01066.t1 | MTR_7g053160 | 95.968 | 248 | 10 | 0 | 1 | 248 | 1 | 248 | 4.27e-175 | 481 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01066.t1 | AT5G10360 | 92.562 | 242 | 18 | 0 | 1 | 242 | 1 | 242 | 1.63e-163 | 452 |
| MS.gene01066.t1 | AT4G31700 | 92.149 | 242 | 19 | 0 | 1 | 242 | 1 | 242 | 4.08e-155 | 431 |
| MS.gene01066.t1 | AT5G10360 | 73.967 | 242 | 11 | 1 | 1 | 242 | 1 | 190 | 1.06e-118 | 337 |
| MS.gene01066.t1 | AT4G31700 | 91.667 | 180 | 15 | 0 | 63 | 242 | 1 | 180 | 1.09e-106 | 306 |
Find 70 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAAGAGCTTACGGATTT+TGG | 0.153100 | 2.4:+70796636 | None:intergenic |
| TTGCTACTCGCAGGAATTTA+AGG | 0.172205 | 2.4:-70797773 | MS.gene01066:intron |
| TAAATTGTAGTCGTGCATTT+TGG | 0.186966 | 2.4:-70797918 | MS.gene01066:intron |
| CTCTTAGGACCCCTCATTCT+TGG | 0.233777 | 2.4:+70796664 | None:intergenic |
| GAGGATCTCACAAGAGGTTT+TGG | 0.240752 | 2.4:-70797890 | MS.gene01066:CDS |
| CATCGATTTCAAGCTTCTTC+TGG | 0.244242 | 2.4:+70798039 | None:intergenic |
| GTGACCAGGCGCTGTATCTT+TGG | 0.280234 | 2.4:+70795516 | None:intergenic |
| TGACCAGGCGCTGTATCTTT+GGG | 0.285753 | 2.4:+70795517 | None:intergenic |
| GTTAACACACCCTGCTTCAT+TGG | 0.338665 | 2.4:+70797706 | None:intergenic |
| GGAACGCCGTAGTGAGAGTT+TGG | 0.395371 | 2.4:-70795373 | MS.gene01066:CDS |
| TGCTACTCGCAGGAATTTAA+GGG | 0.399045 | 2.4:-70797772 | MS.gene01066:intron |
| AGACCTCTCTGTTCTGAACT+TGG | 0.408965 | 2.4:-70796740 | MS.gene01066:CDS |
| ACTTCTTGCCTCTAGATTGA+AGG | 0.416460 | 2.4:-70795403 | MS.gene01066:CDS |
| TGGAAAGATTGAAGAGCTTA+CGG | 0.437945 | 2.4:+70796629 | None:intergenic |
| CTCTTTCTTTGAAGAGTCAA+AGG | 0.440470 | 2.4:+70795492 | None:intergenic |
| AAGTTCAGAACAGAGAGGTC+TGG | 0.450666 | 2.4:+70796742 | None:intergenic |
| GGCGCAATGGAGAGCGAAGA+AGG | 0.461619 | 2.4:-70796792 | MS.gene01066:CDS |
| CTTTGACTCTTCAAAGAAAG+AGG | 0.462251 | 2.4:-70795491 | MS.gene01066:CDS |
| CTTCCTGACATCATCATCCT+TGG | 0.467618 | 2.4:+70796609 | None:intergenic |
| AGCAAGAGGCGAACACGACC+AGG | 0.471596 | 2.4:+70797682 | None:intergenic |
| ACAAGGATTTCCAATGAAGC+AGG | 0.480359 | 2.4:-70797716 | MS.gene01066:CDS |
| CGCTGAAACACCTTGCTTAG+CGG | 0.483675 | 2.4:+70795326 | None:intergenic |
| GAACTTGGTTATTGTGAAGA+AGG | 0.484415 | 2.4:-70796725 | MS.gene01066:CDS |
| AAGGGTGAAAATGATTTGCC+TGG | 0.498405 | 2.4:-70796706 | MS.gene01066:CDS |
| GGATATGTCTTCAAAATCAC+TGG | 0.501460 | 2.4:-70797751 | MS.gene01066:CDS |
| AGTTCAGAACAGAGAGGTCT+GGG | 0.504245 | 2.4:+70796743 | None:intergenic |
| TTTCCAAGGATGATGATGTC+AGG | 0.517231 | 2.4:-70796612 | MS.gene01066:CDS |
| GACCAGGCGCTGTATCTTTG+GGG | 0.517909 | 2.4:+70795518 | None:intergenic |
| TTCTTCTGGCAACCAGTGGT+TGG | 0.519589 | 2.4:+70798053 | None:intergenic |
| CATTGCGCCTTCCGTGTCCT+CGG | 0.523620 | 2.4:+70796806 | None:intergenic |
| AACGTTGCAAATCCAACCAC+TGG | 0.533153 | 2.4:-70798065 | MS.gene01066:CDS |
| CTTCCGTGTCCTCGGAAACA+AGG | 0.533549 | 2.4:+70796814 | None:intergenic |
| GTTTGGCTAAGAAGAGATCA+AGG | 0.534691 | 2.4:-70795356 | MS.gene01066:CDS |
| ATGTTGAAAAGCCAAGAATG+AGG | 0.544680 | 2.4:-70796675 | MS.gene01066:CDS |
| AGCCCCAAAGATACAGCGCC+TGG | 0.547274 | 2.4:-70795520 | MS.gene01066:CDS |
| AAGCTTCTTCTGGCAACCAG+TGG | 0.547317 | 2.4:+70798049 | None:intergenic |
| CGGACTTTCACAACCAAAGC+AGG | 0.557230 | 2.4:-70796568 | MS.gene01066:intron |
| CGAAGAAGGAAGTCTGTTCG+TGG | 0.557458 | 2.4:-70796778 | MS.gene01066:CDS |
| CGAGGACACGGAAGGCGCAA+TGG | 0.561877 | 2.4:-70796805 | MS.gene01066:CDS |
| CTCTAGATTGAAGGAGCAGA+GGG | 0.562368 | 2.4:-70795394 | MS.gene01066:CDS |
| AAGCAGGGTGTGTTAACCCC+TGG | 0.565983 | 2.4:-70797700 | MS.gene01066:CDS |
| TGTTGAAAAGCCAAGAATGA+GGG | 0.570225 | 2.4:-70796674 | MS.gene01066:CDS |
| ACTCCTTGTTTCCGAGGACA+CGG | 0.574407 | 2.4:-70796817 | MS.gene01066:CDS |
| TTTGACTCTTCAAAGAAAGA+GGG | 0.574504 | 2.4:-70795490 | MS.gene01066:CDS |
| TAAGCTCTTCAATCTTTCCA+AGG | 0.582836 | 2.4:-70796626 | MS.gene01066:CDS |
| AACTTGGTTATTGTGAAGAA+GGG | 0.597761 | 2.4:-70796724 | MS.gene01066:CDS |
| GCAGGTACTCCTTGTTTCCG+AGG | 0.602952 | 2.4:-70796823 | MS.gene01066:intron |
| GAAGAGTCAAAGGAGTGACC+AGG | 0.604666 | 2.4:+70795502 | None:intergenic |
| TTATACCTCTGTGGAGCAAG+AGG | 0.605499 | 2.4:+70797668 | None:intergenic |
| CTTTGGTTGTGAAAGTCCGA+CGG | 0.609736 | 2.4:+70796572 | None:intergenic |
| CTTGTTTCCGAGGACACGGA+AGG | 0.610269 | 2.4:-70796813 | MS.gene01066:CDS |
| AGGCTCTCCACCGCTAAGCA+AGG | 0.611423 | 2.4:-70795336 | MS.gene01066:CDS |
| TATGTCTTCAAAATCACTGG+TGG | 0.614527 | 2.4:-70797748 | MS.gene01066:CDS |
| GGACAAGAGGATCTCACAAG+AGG | 0.614846 | 2.4:-70797896 | MS.gene01066:CDS |
| GCAAGAGGCGAACACGACCA+GGG | 0.615545 | 2.4:+70797683 | None:intergenic |
| GGTTGTGAAAGTCCGACGGT+AGG | 0.616762 | 2.4:+70796576 | None:intergenic |
| CCTCTAGATTGAAGGAGCAG+AGG | 0.621309 | 2.4:-70795395 | MS.gene01066:CDS |
| CCTCTGCTCCTTCAATCTAG+AGG | 0.626623 | 2.4:+70795395 | None:intergenic |
| GTTGAAAAGCCAAGAATGAG+GGG | 0.636999 | 2.4:-70796673 | MS.gene01066:CDS |
| CAAGGATTTCCAATGAAGCA+GGG | 0.641279 | 2.4:-70797715 | MS.gene01066:CDS |
| TCTTAGCCAAACTCTCACTA+CGG | 0.645166 | 2.4:+70795367 | None:intergenic |
| GAAGAAGGAAGTCTGTTCGT+GGG | 0.645378 | 2.4:-70796777 | MS.gene01066:CDS |
| TGAAACACCTTGCTTAGCGG+TGG | 0.657295 | 2.4:+70795329 | None:intergenic |
| GTAGAAAGGTTATACCTCTG+TGG | 0.668019 | 2.4:+70797659 | None:intergenic |
| AATTGCCAAAGCAAAATCAG+AGG | 0.670645 | 2.4:-70795442 | MS.gene01066:CDS |
| CAAGAGGCGAACACGACCAG+GGG | 0.676279 | 2.4:+70797684 | None:intergenic |
| ACTGGTGGATGTGACAAACA+AGG | 0.694989 | 2.4:-70797733 | MS.gene01066:CDS |
| AGTATGTCAACACCTACCGT+CGG | 0.698935 | 2.4:-70796588 | MS.gene01066:CDS |
| GTTCGCCTCTTGCTCCACAG+AGG | 0.710024 | 2.4:-70797673 | MS.gene01066:intron |
| TAACCAAGTTCAGAACAGAG+AGG | 0.775773 | 2.4:+70796737 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTAATATACAAAACAA+AGG | + | chr2.4:70797327-70797346 | None:intergenic | 10.0% |
| !! | TGAATATAACAATTAATTTA+AGG | + | chr2.4:70795666-70795685 | None:intergenic | 10.0% |
| !!! | TTTTATTAATTATTATAGTG+AGG | - | chr2.4:70795868-70795887 | MS.gene01066:intron | 10.0% |
| !! | ATTTATTAATTATGTTGTTC+GGG | - | chr2.4:70796333-70796352 | MS.gene01066:intron | 15.0% |
| !! | CATAATTAACAAAACTAAAA+AGG | + | chr2.4:70796289-70796308 | None:intergenic | 15.0% |
| !! | GATTTATTAATTATGTTGTT+CGG | - | chr2.4:70796332-70796351 | MS.gene01066:intron | 15.0% |
| !! | TATGGATCTATAATTTATAA+TGG | - | chr2.4:70797883-70797902 | MS.gene01066:CDS | 15.0% |
| !! | TTGTAATAGAATATTATCTA+TGG | - | chr2.4:70797853-70797872 | MS.gene01066:intron | 15.0% |
| !!! | AAAAAAAGATCTAAAATAGA+GGG | + | chr2.4:70796166-70796185 | None:intergenic | 15.0% |
| !! | AAAAATTCCAACTTAGATAT+TGG | + | chr2.4:70797041-70797060 | None:intergenic | 20.0% |
| !! | AAACAAAAAAAACTGTAGAA+AGG | + | chr2.4:70795837-70795856 | None:intergenic | 20.0% |
| !! | ACAAGTGATAAATACTAAAT+AGG | + | chr2.4:70797006-70797025 | None:intergenic | 20.0% |
| !! | ACCAAATAAATACTTAACAA+GGG | + | chr2.4:70796611-70796630 | None:intergenic | 20.0% |
| !! | AGATTTAAAAATAGAATCAG+AGG | + | chr2.4:70797622-70797641 | None:intergenic | 20.0% |
| !! | CAAACAGTAATAAAAACAAA+AGG | + | chr2.4:70796104-70796123 | None:intergenic | 20.0% |
| !! | GAAACGCAAAAAAAAAAAAA+AGG | + | chr2.4:70795491-70795510 | None:intergenic | 20.0% |
| !! | GATTTAAAAATAGAATCAGA+GGG | + | chr2.4:70797621-70797640 | None:intergenic | 20.0% |
| !! | TACCAAATAAATACTTAACA+AGG | + | chr2.4:70796612-70796631 | None:intergenic | 20.0% |
| !! | TGTACTATTATTTGCATTAT+AGG | - | chr2.4:70796044-70796063 | MS.gene01066:intron | 20.0% |
| !!! | ATATTAATTATGCTTTGTTG+TGG | - | chr2.4:70797336-70797355 | MS.gene01066:intron | 20.0% |
| !!! | ATCACTTGCTATTATAATAT+AGG | - | chr2.4:70797065-70797084 | MS.gene01066:intron | 20.0% |
| !!! | GAAAAAAAGATCTAAAATAG+AGG | + | chr2.4:70796167-70796186 | None:intergenic | 20.0% |
| !!! | GAATTTATTTTGTATGTTAG+TGG | - | chr2.4:70796210-70796229 | MS.gene01066:intron | 20.0% |
| !!! | TATGTTTTTTATAATACCAG+CGG | - | chr2.4:70796463-70796482 | MS.gene01066:intron | 20.0% |
| !!! | TCACTTGCTATTATAATATA+GGG | - | chr2.4:70797066-70797085 | MS.gene01066:intron | 20.0% |
| ! | AATAATTGTCTTAAGTTAGC+TGG | + | chr2.4:70797730-70797749 | None:intergenic | 25.0% |
| ! | AATTTAATGTTTGTTTGAGC+AGG | - | chr2.4:70796638-70796657 | MS.gene01066:CDS | 25.0% |
| ! | ACAAAATAAATTCACCAGTT+TGG | + | chr2.4:70796203-70796222 | None:intergenic | 25.0% |
| ! | ACTGCAAAACAATTTCTATA+TGG | + | chr2.4:70795392-70795411 | None:intergenic | 25.0% |
| ! | ACTTAAGACAATTATTACAG+CGG | - | chr2.4:70797734-70797753 | MS.gene01066:CDS | 25.0% |
| ! | ATTATCTATGGTCATAACTA+TGG | - | chr2.4:70797865-70797884 | MS.gene01066:intron | 25.0% |
| ! | CAAAATAAATTCACCAGTTT+GGG | + | chr2.4:70796202-70796221 | None:intergenic | 25.0% |
| ! | CTCTTTATCATTTACTTGAA+TGG | - | chr2.4:70796076-70796095 | MS.gene01066:intron | 25.0% |
| !! | AAAATATCCGCTCTTTTATT+TGG | - | chr2.4:70797765-70797784 | MS.gene01066:intron | 25.0% |
| !! | TAGCTTCTTTCAATTTTTCA+AGG | + | chr2.4:70797253-70797272 | None:intergenic | 25.0% |
| !! | TGTCAATTTGCAATTGTTTT+GGG | + | chr2.4:70797645-70797664 | None:intergenic | 25.0% |
| !! | TTGTCAATTTGCAATTGTTT+TGG | + | chr2.4:70797646-70797665 | None:intergenic | 25.0% |
| !!! | AAATATCCGCTCTTTTATTT+GGG | - | chr2.4:70797766-70797785 | MS.gene01066:intron | 25.0% |
| !!! | AACAAAGGTTTTAAGTTTAG+TGG | + | chr2.4:70797312-70797331 | None:intergenic | 25.0% |
| !!! | ACAAAGGTTTTAAGTTTAGT+GGG | + | chr2.4:70797311-70797330 | None:intergenic | 25.0% |
| !!! | ATAGCTTTGGTTTTGAAAAA+TGG | - | chr2.4:70796967-70796986 | MS.gene01066:intron | 25.0% |
| !!! | GAATATTTAGTTGTTTTGAG+AGG | - | chr2.4:70797471-70797490 | MS.gene01066:intron | 25.0% |
| !!! | TATGTTAGTGGATTTTTTGT+AGG | - | chr2.4:70796222-70796241 | MS.gene01066:intron | 25.0% |
| !!! | TCAATTTTTCAAGGATTGAT+GGG | + | chr2.4:70797244-70797263 | None:intergenic | 25.0% |
| !!! | TTCAATTTTTCAAGGATTGA+TGG | + | chr2.4:70797245-70797264 | None:intergenic | 25.0% |
| AACTTGGTTATTGTGAAGAA+GGG | - | chr2.4:70796755-70796774 | MS.gene01066:CDS | 30.0% | |
| AGATTGCTAAATAGATGAAG+TGG | - | chr2.4:70797523-70797542 | MS.gene01066:intron | 30.0% | |
| ATTATAATATAGGGTGAGTC+TGG | - | chr2.4:70797075-70797094 | MS.gene01066:intron | 30.0% | |
| ATTGTCTCCAATATCTAAGT+TGG | - | chr2.4:70797031-70797050 | MS.gene01066:intron | 30.0% | |
| ATTTGGGGGAAAAACATAAA+TGG | + | chr2.4:70796369-70796388 | None:intergenic | 30.0% | |
| CAATGAAATCAAAGGAACAA+GGG | + | chr2.4:70795355-70795374 | None:intergenic | 30.0% | |
| CACAAACTCATCTATACAAT+GGG | + | chr2.4:70797184-70797203 | None:intergenic | 30.0% | |
| CATAAGAGCAATGAAATCAA+AGG | + | chr2.4:70795363-70795382 | None:intergenic | 30.0% | |
| CATCTATTTAGCAATCTATC+AGG | + | chr2.4:70797520-70797539 | None:intergenic | 30.0% | |
| GAACCATCTAATATTAGAGA+CGG | + | chr2.4:70796570-70796589 | None:intergenic | 30.0% | |
| GATTGCTAAATAGATGAAGT+GGG | - | chr2.4:70797524-70797543 | MS.gene01066:intron | 30.0% | |
| GCCCTTGTTAAGTATTTATT+TGG | - | chr2.4:70796607-70796626 | MS.gene01066:CDS | 30.0% | |
| GTCGTTAGTTAGTTAACATT+GGG | - | chr2.4:70797403-70797422 | MS.gene01066:intron | 30.0% | |
| TACTATAAACCCATTTGTGT+TGG | - | chr2.4:70795917-70795936 | MS.gene01066:intron | 30.0% | |
| TATTAATTATGTTGTTCGGG+TGG | - | chr2.4:70796336-70796355 | MS.gene01066:intron | 30.0% | |
| TGTATTATCAACAGAGAATC+AGG | + | chr2.4:70796948-70796967 | None:intergenic | 30.0% | |
| TGTCGTTAGTTAGTTAACAT+TGG | - | chr2.4:70797402-70797421 | MS.gene01066:intron | 30.0% | |
| TGTTTGAATTATTCGTTTCC+TGG | - | chr2.4:70796118-70796137 | MS.gene01066:intron | 30.0% | |
| TTAGTTAGTTAACATTGGGA+AGG | - | chr2.4:70797407-70797426 | MS.gene01066:intron | 30.0% | |
| TTTGACTCTTCAAAGAAAGA+GGG | - | chr2.4:70797989-70798008 | MS.gene01066:intron | 30.0% | |
| ! | AAATTGTAGTCGTGCATTTT+GGG | - | chr2.4:70795562-70795581 | MS.gene01066:intron | 30.0% |
| ! | TAAATTGTAGTCGTGCATTT+TGG | - | chr2.4:70795561-70795580 | MS.gene01066:intron | 30.0% |
| ! | TCTAAAATAGAGGGTTAAAC+CGG | + | chr2.4:70796157-70796176 | None:intergenic | 30.0% |
| ! | TTTGTTGTGGTTAGAAGTAT+AGG | - | chr2.4:70797349-70797368 | MS.gene01066:intron | 30.0% |
| !! | CTGTTGATAATACATAGCTT+TGG | - | chr2.4:70796954-70796973 | MS.gene01066:intron | 30.0% |
| !!! | TTGGTTTTGAAAAATGGTCT+TGG | - | chr2.4:70796973-70796992 | MS.gene01066:intron | 30.0% |
| AAGACAATTATTACAGCGGT+CGG | - | chr2.4:70797738-70797757 | MS.gene01066:CDS | 35.0% | |
| AAGGAACCCAAATAAAAGAG+CGG | + | chr2.4:70797775-70797794 | None:intergenic | 35.0% | |
| AATTGCCAAAGCAAAATCAG+AGG | - | chr2.4:70798037-70798056 | MS.gene01066:CDS | 35.0% | |
| ACAAGAACTGAATTGCAACA+GGG | - | chr2.4:70797591-70797610 | MS.gene01066:intron | 35.0% | |
| AGTAGGAAATTAGTTGAGAG+TGG | + | chr2.4:70797706-70797725 | None:intergenic | 35.0% | |
| ATGTTGAAAAGCCAAGAATG+AGG | - | chr2.4:70796804-70796823 | MS.gene01066:CDS | 35.0% | |
| CAAAGGAACAAGGGAAATTA+CGG | + | chr2.4:70795346-70795365 | None:intergenic | 35.0% | |
| CCACAAACTCATCTATACAA+TGG | + | chr2.4:70797185-70797204 | None:intergenic | 35.0% | |
| CCATTGTATAGATGAGTTTG+TGG | - | chr2.4:70797182-70797201 | MS.gene01066:intron | 35.0% | |
| CTAGTTCCTATTAACAGCAA+CGG | + | chr2.4:70797556-70797575 | None:intergenic | 35.0% | |
| CTGAATTAGCCCATCTAAAT+TGG | + | chr2.4:70796002-70796021 | None:intergenic | 35.0% | |
| CTTTGACTCTTCAAAGAAAG+AGG | - | chr2.4:70797988-70798007 | MS.gene01066:intron | 35.0% | |
| GAACTTGGTTATTGTGAAGA+AGG | - | chr2.4:70796754-70796773 | MS.gene01066:CDS | 35.0% | |
| GCAATGAAATCAAAGGAACA+AGG | + | chr2.4:70795356-70795375 | None:intergenic | 35.0% | |
| GGAAAGTAGTTTAGTAATCG+CGG | - | chr2.4:70797435-70797454 | MS.gene01066:intron | 35.0% | |
| GGATATGTCTTCAAAATCAC+TGG | - | chr2.4:70795728-70795747 | MS.gene01066:intron | 35.0% | |
| TAAGCTCTTCAATCTTTCCA+AGG | - | chr2.4:70796853-70796872 | MS.gene01066:intron | 35.0% | |
| TAATATTAGAGACGGCAAAG+TGG | + | chr2.4:70796562-70796581 | None:intergenic | 35.0% | |
| TAGTTCCTATTAACAGCAAC+GGG | + | chr2.4:70797555-70797574 | None:intergenic | 35.0% | |
| TATGTCTTCAAAATCACTGG+TGG | - | chr2.4:70795731-70795750 | MS.gene01066:intron | 35.0% | |
| TGGAAAGATTGAAGAGCTTA+CGG | + | chr2.4:70796853-70796872 | None:intergenic | 35.0% | |
| TGTTGAAAAGCCAAGAATGA+GGG | - | chr2.4:70796805-70796824 | MS.gene01066:CDS | 35.0% | |
| TTGCCGTCTCTAATATTAGA+TGG | - | chr2.4:70796564-70796583 | MS.gene01066:intron | 35.0% | |
| ! | ATATTCCCGTTGCTGTTAAT+AGG | - | chr2.4:70797547-70797566 | MS.gene01066:intron | 35.0% |
| ! | ATCTAGAGGCAAGAAGTTTT+TGG | + | chr2.4:70798073-70798092 | None:intergenic | 35.0% |
| ! | ATTGAAGAGCTTACGGATTT+TGG | + | chr2.4:70796846-70796865 | None:intergenic | 35.0% |
| ! | CTCTTTCTTTGAAGAGTCAA+AGG | + | chr2.4:70797990-70798009 | None:intergenic | 35.0% |
| ! | GGAAGAAATTTTACCTGCTT+TGG | + | chr2.4:70796927-70796946 | None:intergenic | 35.0% |
| ! | TTTTCAACATCAGTCAAACC+AGG | + | chr2.4:70796794-70796813 | None:intergenic | 35.0% |
| ! | TTTTGGCAGCTGACAAATTT+GGG | + | chr2.4:70796385-70796404 | None:intergenic | 35.0% |
| !! | ATTTTGGCAGCTGACAAATT+TGG | + | chr2.4:70796386-70796405 | None:intergenic | 35.0% |
| !! | TTTTCAAGGATTGATGGGAA+GGG | + | chr2.4:70797239-70797258 | None:intergenic | 35.0% |
| !!! | AGGTTTTAAGTTTAGTGGGA+AGG | + | chr2.4:70797307-70797326 | None:intergenic | 35.0% |
| !!! | GGTTTTAAGTTTAGTGGGAA+GGG | + | chr2.4:70797306-70797325 | None:intergenic | 35.0% |
| !!! | TGTTTTGAGAGGAAGATTTC+AGG | - | chr2.4:70797482-70797501 | MS.gene01066:intron | 35.0% |
| !!! | TTTTTCAAGGATTGATGGGA+AGG | + | chr2.4:70797240-70797259 | None:intergenic | 35.0% |
| !!! | TTTTTTATAATACCAGCGGC+TGG | - | chr2.4:70796467-70796486 | MS.gene01066:intron | 35.0% |
| AACACGTATCTGATTGTGCA+GGG | - | chr2.4:70797922-70797941 | MS.gene01066:intron | 40.0% | |
| AAGCCATCACCAACACAAAT+GGG | + | chr2.4:70795929-70795948 | None:intergenic | 40.0% | |
| ACAAGGATTTCCAATGAAGC+AGG | - | chr2.4:70795763-70795782 | MS.gene01066:intron | 40.0% | |
| ACTTCTTGCCTCTAGATTGA+AGG | - | chr2.4:70798076-70798095 | MS.gene01066:intron | 40.0% | |
| AGCAATTAACACGTCAAAGG+AGG | + | chr2.4:70796532-70796551 | None:intergenic | 40.0% | |
| ATCATGCAAGTCCATGAAAG+CGG | + | chr2.4:70797800-70797819 | None:intergenic | 40.0% | |
| CAAGGATTTCCAATGAAGCA+GGG | - | chr2.4:70795764-70795783 | MS.gene01066:intron | 40.0% | |
| CAATTAACACGTCAAAGGAG+GGG | + | chr2.4:70796530-70796549 | None:intergenic | 40.0% | |
| CACAAGAACTGAATTGCAAC+AGG | - | chr2.4:70797590-70797609 | MS.gene01066:intron | 40.0% | |
| CTTTCATGGACTTGCATGAT+AGG | - | chr2.4:70797800-70797819 | MS.gene01066:intron | 40.0% | |
| GCAATTAACACGTCAAAGGA+GGG | + | chr2.4:70796531-70796550 | None:intergenic | 40.0% | |
| GTAGAAAGGTTATACCTCTG+TGG | + | chr2.4:70795823-70795842 | None:intergenic | 40.0% | |
| GTCAGCAATTAACACGTCAA+AGG | + | chr2.4:70796535-70796554 | None:intergenic | 40.0% | |
| GTTAACATTGGGAAGGTAGT+TGG | - | chr2.4:70797414-70797433 | MS.gene01066:intron | 40.0% | |
| GTTGAAAAGCCAAGAATGAG+GGG | - | chr2.4:70796806-70796825 | MS.gene01066:CDS | 40.0% | |
| GTTTGGCTAAGAAGAGATCA+AGG | - | chr2.4:70798123-70798142 | MS.gene01066:intron | 40.0% | |
| TAACACGTATCTGATTGTGC+AGG | - | chr2.4:70797921-70797940 | MS.gene01066:intron | 40.0% | |
| TAACCAAGTTCAGAACAGAG+AGG | + | chr2.4:70796745-70796764 | None:intergenic | 40.0% | |
| TAATATAGGGTGAGTCTGGT+TGG | - | chr2.4:70797079-70797098 | MS.gene01066:intron | 40.0% | |
| TAGCCCATCTAAATTGGAAC+CGG | + | chr2.4:70795996-70796015 | None:intergenic | 40.0% | |
| TCTCCGGTTCCAATTTAGAT+GGG | - | chr2.4:70795990-70796009 | MS.gene01066:intron | 40.0% | |
| TCTTAGCCAAACTCTCACTA+CGG | + | chr2.4:70798115-70798134 | None:intergenic | 40.0% | |
| TGCTACTCGCAGGAATTTAA+GGG | - | chr2.4:70795707-70795726 | MS.gene01066:intron | 40.0% | |
| TTGCTACTCGCAGGAATTTA+AGG | - | chr2.4:70795706-70795725 | MS.gene01066:intron | 40.0% | |
| TTTGGCAGCTGACAAATTTG+GGG | + | chr2.4:70796384-70796403 | None:intergenic | 40.0% | |
| ! | AAACCCATTTGTGTTGGTGA+TGG | - | chr2.4:70795923-70795942 | MS.gene01066:intron | 40.0% |
| ! | AAGGGTGAAAATGATTTGCC+TGG | - | chr2.4:70796773-70796792 | MS.gene01066:CDS | 40.0% |
| ! | AGGATCTCACAAGAGGTTTT+GGG | - | chr2.4:70795590-70795609 | MS.gene01066:intron | 40.0% |
| ! | TTTCCAAGGATGATGATGTC+AGG | - | chr2.4:70796867-70796886 | MS.gene01066:intron | 40.0% |
| !! | AGGTTGACTTGTTCTATCTG+AGG | - | chr2.4:70797823-70797842 | MS.gene01066:intron | 40.0% |
| !! | CATCGATTTCAAGCTTCTTC+TGG | + | chr2.4:70795443-70795462 | None:intergenic | 40.0% |
| AACGTTGCAAATCCAACCAC+TGG | - | chr2.4:70795414-70795433 | MS.gene01066:CDS | 45.0% | |
| AAGTTCAGAACAGAGAGGTC+TGG | + | chr2.4:70796740-70796759 | None:intergenic | 45.0% | |
| AGATTCAAACCGAAACCTCG+AGG | + | chr2.4:70795971-70795990 | None:intergenic | 45.0% | |
| AGTATGTCAACACCTACCGT+CGG | - | chr2.4:70796891-70796910 | MS.gene01066:intron | 45.0% | |
| AGTTCAGAACAGAGAGGTCT+GGG | + | chr2.4:70796739-70796758 | None:intergenic | 45.0% | |
| CAAGCCATCACCAACACAAA+TGG | + | chr2.4:70795930-70795949 | None:intergenic | 45.0% | |
| CACTTATACGAGACCCAAAC+TGG | - | chr2.4:70796186-70796205 | MS.gene01066:intron | 45.0% | |
| CTCTAGATTGAAGGAGCAGA+GGG | - | chr2.4:70798085-70798104 | MS.gene01066:intron | 45.0% | |
| CTCTCCGGTTCCAATTTAGA+TGG | - | chr2.4:70795989-70796008 | MS.gene01066:intron | 45.0% | |
| CTTCCTGACATCATCATCCT+TGG | + | chr2.4:70796873-70796892 | None:intergenic | 45.0% | |
| CTTTGGTTGTGAAAGTCCGA+CGG | + | chr2.4:70796910-70796929 | None:intergenic | 45.0% | |
| GAAGAAGGAAGTCTGTTCGT+GGG | - | chr2.4:70796702-70796721 | MS.gene01066:CDS | 45.0% | |
| GTCTTAAGTTAGCTGGCAGT+AGG | + | chr2.4:70797723-70797742 | None:intergenic | 45.0% | |
| GTTAACACACCCTGCTTCAT+TGG | + | chr2.4:70795776-70795795 | None:intergenic | 45.0% | |
| TAGTGGGAAGGGATAGAAGT+CGG | + | chr2.4:70797295-70797314 | None:intergenic | 45.0% | |
| TCATGCAAGTCCATGAAAGC+GGG | + | chr2.4:70797799-70797818 | None:intergenic | 45.0% | |
| TCATGGACTTGCATGATAGG+AGG | - | chr2.4:70797803-70797822 | MS.gene01066:intron | 45.0% | |
| TGACGTGTTAATTGCTGACC+TGG | - | chr2.4:70796536-70796555 | MS.gene01066:intron | 45.0% | |
| TTATACCTCTGTGGAGCAAG+AGG | + | chr2.4:70795814-70795833 | None:intergenic | 45.0% | |
| TTGGCAGCTGACAAATTTGG+GGG | + | chr2.4:70796383-70796402 | None:intergenic | 45.0% | |
| ! | ACTGGTGGATGTGACAAACA+AGG | - | chr2.4:70795746-70795765 | MS.gene01066:intron | 45.0% |
| ! | AGACCTCTCTGTTCTGAACT+TGG | - | chr2.4:70796739-70796758 | MS.gene01066:CDS | 45.0% |
| ! | GAGGATCTCACAAGAGGTTT+TGG | - | chr2.4:70795589-70795608 | MS.gene01066:intron | 45.0% |
| ! | GGTTTCGGTTTGAATCTCTC+CGG | - | chr2.4:70795974-70795993 | MS.gene01066:intron | 45.0% |
| ! | GTGGAGCAAGACTGTACTTT+TGG | - | chr2.4:70797201-70797220 | MS.gene01066:intron | 45.0% |
| ! | TATTCGTTTCCTGGTTCGCT+GGG | - | chr2.4:70796127-70796146 | MS.gene01066:intron | 45.0% |
| ! | TGCTGCCTCTGATTTTGCTT+TGG | + | chr2.4:70798045-70798064 | None:intergenic | 45.0% |
| ! | TTATTCGTTTCCTGGTTCGC+TGG | - | chr2.4:70796126-70796145 | MS.gene01066:intron | 45.0% |
| !! | CGGATTTTGGAAGCTCTCTT+AGG | + | chr2.4:70796833-70796852 | None:intergenic | 45.0% |
| !!! | GAGGTTTTGGGTGATGCTTT+AGG | - | chr2.4:70795602-70795621 | MS.gene01066:intron | 45.0% |
| !!! | ATATATATATGTATAAATTT+TGG | + | chr2.4:70796402-70796421 | None:intergenic | 5.0% |
| AAGCTTCTTCTGGCAACCAG+TGG | + | chr2.4:70795433-70795452 | None:intergenic | 50.0% | |
| CAAGTCCATGAAAGCGGGAA+AGG | + | chr2.4:70797794-70797813 | None:intergenic | 50.0% | |
| CCTCTAGATTGAAGGAGCAG+AGG | - | chr2.4:70798084-70798103 | MS.gene01066:intron | 50.0% | |
| CCTCTGCTCCTTCAATCTAG+AGG | + | chr2.4:70798087-70798106 | None:intergenic | 50.0% | |
| CGAAGAAGGAAGTCTGTTCG+TGG | - | chr2.4:70796701-70796720 | MS.gene01066:CDS | 50.0% | |
| CGCTGAAACACCTTGCTTAG+CGG | + | chr2.4:70798156-70798175 | None:intergenic | 50.0% | |
| CGGACTTTCACAACCAAAGC+AGG | - | chr2.4:70796911-70796930 | MS.gene01066:intron | 50.0% | |
| CTCTTAGGACCCCTCATTCT+TGG | + | chr2.4:70796818-70796837 | None:intergenic | 50.0% | |
| GAAGAGTCAAAGGAGTGACC+AGG | + | chr2.4:70797980-70797999 | None:intergenic | 50.0% | |
| GGACAAGAGGATCTCACAAG+AGG | - | chr2.4:70795583-70795602 | MS.gene01066:intron | 50.0% | |
| TGAAACACCTTGCTTAGCGG+TGG | + | chr2.4:70798153-70798172 | None:intergenic | 50.0% | |
| TTCAAACCGAAACCTCGAGG+AGG | + | chr2.4:70795968-70795987 | None:intergenic | 50.0% | |
| TTCTTCTGGCAACCAGTGGT+TGG | + | chr2.4:70795429-70795448 | None:intergenic | 50.0% | |
| ! | ACTCCTTGTTTCCGAGGACA+CGG | - | chr2.4:70796662-70796681 | MS.gene01066:CDS | 50.0% |
| ! | TGACCAGGCGCTGTATCTTT+GGG | + | chr2.4:70797965-70797984 | None:intergenic | 50.0% |
| ! | TGCGTGATTTTGCTACTCGC+AGG | - | chr2.4:70795697-70795716 | MS.gene01066:intron | 50.0% |
| !! | TGTTGGTGATGGCTTGACCT+TGG | - | chr2.4:70795934-70795953 | MS.gene01066:intron | 50.0% |
| !!! | GTCGTGCATTTTGGGACAAG+AGG | - | chr2.4:70795570-70795589 | MS.gene01066:intron | 50.0% |
| AACACGTCAAAGGAGGGGAG+TGG | + | chr2.4:70796525-70796544 | None:intergenic | 55.0% | |
| AAGCAGGGTGTGTTAACCCC+TGG | - | chr2.4:70795779-70795798 | MS.gene01066:intron | 55.0% | |
| AGTGCTCCTCCTCGAGGTTT+CGG | - | chr2.4:70795959-70795978 | MS.gene01066:intron | 55.0% | |
| CTCAAATAGTCACCAGCCGC+TGG | + | chr2.4:70796482-70796501 | None:intergenic | 55.0% | |
| CTTCCGTGTCCTCGGAAACA+AGG | + | chr2.4:70796668-70796687 | None:intergenic | 55.0% | |
| CTTGTTTCCGAGGACACGGA+AGG | - | chr2.4:70796666-70796685 | MS.gene01066:CDS | 55.0% | |
| GGAACGCCGTAGTGAGAGTT+TGG | - | chr2.4:70798106-70798125 | MS.gene01066:intron | 55.0% | |
| GGGTTCCTTTCCCGCTTTCA+TGG | - | chr2.4:70797786-70797805 | MS.gene01066:intron | 55.0% | |
| GGTTGTGAAAGTCCGACGGT+AGG | + | chr2.4:70796906-70796925 | None:intergenic | 55.0% | |
| TTAGAGACGGCAAAGTGGCC+AGG | + | chr2.4:70796557-70796576 | None:intergenic | 55.0% | |
| ! | GACCAGGCGCTGTATCTTTG+GGG | + | chr2.4:70797964-70797983 | None:intergenic | 55.0% |
| ! | GCAGGTACTCCTTGTTTCCG+AGG | - | chr2.4:70796656-70796675 | MS.gene01066:CDS | 55.0% |
| ! | GTGACCAGGCGCTGTATCTT+TGG | + | chr2.4:70797966-70797985 | None:intergenic | 55.0% |
| AGCAAGAGGCGAACACGACC+AGG | + | chr2.4:70795800-70795819 | None:intergenic | 60.0% | |
| AGCCCCAAAGATACAGCGCC+TGG | - | chr2.4:70797959-70797978 | MS.gene01066:intron | 60.0% | |
| AGGCTCTCCACCGCTAAGCA+AGG | - | chr2.4:70798143-70798162 | MS.gene01066:intron | 60.0% | |
| CAAGAGGCGAACACGACCAG+GGG | + | chr2.4:70795798-70795817 | None:intergenic | 60.0% | |
| CATTGCGCCTTCCGTGTCCT+CGG | + | chr2.4:70796676-70796695 | None:intergenic | 60.0% | |
| GCAAGAGGCGAACACGACCA+GGG | + | chr2.4:70795799-70795818 | None:intergenic | 60.0% | |
| GGCGCAATGGAGAGCGAAGA+AGG | - | chr2.4:70796687-70796706 | MS.gene01066:CDS | 60.0% | |
| GTCAAAGGAGGGGAGTGGCA+GGG | + | chr2.4:70796520-70796539 | None:intergenic | 60.0% | |
| GTTCGCCTCTTGCTCCACAG+AGG | - | chr2.4:70795806-70795825 | MS.gene01066:intron | 60.0% | |
| !! | TCGAGGAGGAGCACTCTCCA+AGG | + | chr2.4:70795954-70795973 | None:intergenic | 60.0% |
| !! | TTGGAGAGTGCTCCTCCTCG+AGG | - | chr2.4:70795953-70795972 | MS.gene01066:intron | 60.0% |
| AGTGGCAGGGCAACGTGAGG+CGG | + | chr2.4:70796507-70796526 | None:intergenic | 65.0% | |
| CGTCAAAGGAGGGGAGTGGC+AGG | + | chr2.4:70796521-70796540 | None:intergenic | 65.0% | |
| ! | CGAGGACACGGAAGGCGCAA+TGG | - | chr2.4:70796674-70796693 | MS.gene01066:CDS | 65.0% |
| ! | TCCTGGTTCGCTGGGCTGTC+CGG | - | chr2.4:70796135-70796154 | MS.gene01066:intron | 65.0% |
| ACCGGACAGCCCAGCGAACC+AGG | + | chr2.4:70796139-70796158 | None:intergenic | 70.0% | |
| GGGAGTGGCAGGGCAACGTG+AGG | + | chr2.4:70796510-70796529 | None:intergenic | 70.0% | |
| GTGGCAGGGCAACGTGAGGC+GGG | + | chr2.4:70796506-70796525 | None:intergenic | 70.0% | |
| TGGCAGGGCAACGTGAGGCG+GGG | + | chr2.4:70796505-70796524 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 70795323 | 70798178 | 70795323 | ID=MS.gene01066 |
| chr2.4 | mRNA | 70795323 | 70798178 | 70795323 | ID=MS.gene01066.t1;Parent=MS.gene01066 |
| chr2.4 | exon | 70798173 | 70798178 | 70798173 | ID=MS.gene01066.t1.exon1;Parent=MS.gene01066.t1 |
| chr2.4 | CDS | 70798173 | 70798178 | 70798173 | ID=cds.MS.gene01066.t1;Parent=MS.gene01066.t1 |
| chr2.4 | exon | 70798026 | 70798090 | 70798026 | ID=MS.gene01066.t1.exon2;Parent=MS.gene01066.t1 |
| chr2.4 | CDS | 70798026 | 70798090 | 70798026 | ID=cds.MS.gene01066.t1;Parent=MS.gene01066.t1 |
| chr2.4 | exon | 70797873 | 70797930 | 70797873 | ID=MS.gene01066.t1.exon3;Parent=MS.gene01066.t1 |
| chr2.4 | CDS | 70797873 | 70797930 | 70797873 | ID=cds.MS.gene01066.t1;Parent=MS.gene01066.t1 |
| chr2.4 | exon | 70797674 | 70797782 | 70797674 | ID=MS.gene01066.t1.exon4;Parent=MS.gene01066.t1 |
| chr2.4 | CDS | 70797674 | 70797782 | 70797674 | ID=cds.MS.gene01066.t1;Parent=MS.gene01066.t1 |
| chr2.4 | exon | 70796569 | 70796841 | 70796569 | ID=MS.gene01066.t1.exon5;Parent=MS.gene01066.t1 |
| chr2.4 | CDS | 70796569 | 70796841 | 70796569 | ID=cds.MS.gene01066.t1;Parent=MS.gene01066.t1 |
| chr2.4 | exon | 70795323 | 70795558 | 70795323 | ID=MS.gene01066.t1.exon6;Parent=MS.gene01066.t1 |
| chr2.4 | CDS | 70795323 | 70795558 | 70795323 | ID=cds.MS.gene01066.t1;Parent=MS.gene01066.t1 |
| Gene Sequence |
| Protein sequence |
