Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26343.t1 | XP_013457002.1 | 99.6 | 248 | 1 | 0 | 1 | 248 | 1 | 248 | 1.20E-131 | 479.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26343.t1 | O48549 | 91.2 | 250 | 20 | 1 | 1 | 248 | 1 | 250 | 7.2e-122 | 438.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26343.t1 | I3S1W3 | 99.6 | 248 | 1 | 0 | 1 | 248 | 1 | 248 | 8.5e-132 | 479.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049387 | MS.gene26343 | 0.870212 | 1.73E-66 | -1.69E-46 |
| MS.gene050134 | MS.gene26343 | 0.84739 | 1.19E-59 | -1.69E-46 |
| MS.gene050252 | MS.gene26343 | 0.854521 | 1.16E-61 | -1.69E-46 |
| MS.gene050791 | MS.gene26343 | 0.861195 | 1.22E-63 | -1.69E-46 |
| MS.gene050912 | MS.gene26343 | 0.831604 | 1.52E-55 | -1.69E-46 |
| MS.gene051984 | MS.gene26343 | 0.800875 | 1.17E-48 | -1.69E-46 |
| MS.gene053224 | MS.gene26343 | 0.821236 | 4.49E-53 | -1.69E-46 |
| MS.gene054624 | MS.gene26343 | 0.838599 | 2.61E-57 | -1.69E-46 |
| MS.gene057272 | MS.gene26343 | 0.910402 | 1.95E-82 | -1.69E-46 |
| MS.gene057321 | MS.gene26343 | 0.823456 | 1.37E-53 | -1.69E-46 |
| MS.gene057643 | MS.gene26343 | 0.808916 | 2.45E-50 | -1.69E-46 |
| MS.gene059340 | MS.gene26343 | 0.847142 | 1.39E-59 | -1.69E-46 |
| MS.gene060483 | MS.gene26343 | 0.844211 | 8.70E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene31991 | MS.gene26343 | PPI |
| MS.gene051272 | MS.gene26343 | PPI |
| MS.gene33828 | MS.gene26343 | PPI |
| MS.gene26343 | MS.gene011048 | PPI |
| MS.gene01066 | MS.gene26343 | PPI |
| MS.gene002470 | MS.gene26343 | PPI |
| MS.gene09188 | MS.gene26343 | PPI |
| MS.gene09187 | MS.gene26343 | PPI |
| MS.gene39485 | MS.gene26343 | PPI |
| MS.gene01449 | MS.gene26343 | PPI |
| MS.gene26343 | MS.gene09046 | PPI |
| MS.gene08260 | MS.gene26343 | PPI |
| MS.gene023037 | MS.gene26343 | PPI |
| MS.gene08259 | MS.gene26343 | PPI |
| MS.gene027347 | MS.gene26343 | PPI |
| MS.gene023381 | MS.gene26343 | PPI |
| MS.gene26343 | MS.gene023037 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26343.t1 | MTR_4g088595 | 99.597 | 248 | 1 | 0 | 1 | 248 | 1 | 248 | 0.0 | 500 |
| MS.gene26343.t1 | MTR_7g053160 | 96.371 | 248 | 9 | 0 | 1 | 248 | 1 | 248 | 1.60e-176 | 485 |
| MS.gene26343.t1 | MTR_2g014030 | 96.371 | 248 | 9 | 0 | 1 | 248 | 1 | 248 | 7.14e-176 | 483 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26343.t1 | AT5G10360 | 91.566 | 249 | 19 | 1 | 1 | 247 | 1 | 249 | 2.59e-164 | 454 |
| MS.gene26343.t1 | AT4G31700 | 91.200 | 250 | 20 | 1 | 1 | 248 | 1 | 250 | 2.04e-157 | 437 |
| MS.gene26343.t1 | AT5G10360 | 73.494 | 249 | 12 | 2 | 1 | 247 | 1 | 197 | 1.02e-119 | 340 |
| MS.gene26343.t1 | AT4G31700 | 90.426 | 188 | 16 | 1 | 63 | 248 | 1 | 188 | 3.55e-109 | 312 |
Find 79 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATATTGCAGCCGTGCTTTC+TGG | 0.027256 | 4.1:+21373368 | MS.gene26343:intron |
| TTGCTCTCTGCAGGAGTTTA+AGG | 0.158668 | 4.1:+21373518 | MS.gene26343:intron |
| GTTGAACAGCTTACGGATTT+TGG | 0.198177 | 4.1:-21374372 | None:intergenic |
| CAATTCTTGCTCGCTTCCTT+TGG | 0.278485 | 4.1:-21374906 | None:intergenic |
| GTGACCAATCGTTGTATCTT+TGG | 0.296066 | 4.1:-21374871 | None:intergenic |
| GGAAGTTCTTGGTGATGCTT+TGG | 0.339745 | 4.1:+21373408 | MS.gene26343:CDS |
| ATATTGCAGCCGTGCTTTCT+GGG | 0.350681 | 4.1:+21373369 | MS.gene26343:intron |
| TTCCCTCTGCTCCTTCAATC+TGG | 0.366847 | 4.1:-21374995 | None:intergenic |
| CTCTTAGGACCTCTCATCCT+TGG | 0.367925 | 4.1:-21374344 | None:intergenic |
| AAAGGTGATAATGATCTTCC+AGG | 0.375447 | 4.1:+21374302 | MS.gene26343:CDS |
| GTCAACACTCCCTGCTTCAT+TGG | 0.384872 | 4.1:-21373585 | None:intergenic |
| TGTTGACCCCTGGCCGTGTT+AGG | 0.390290 | 4.1:+21373601 | MS.gene26343:CDS |
| GGCGCAATGGAGAGCGTAGA+AGG | 0.390771 | 4.1:+21374216 | MS.gene26343:CDS |
| TGCTCTCTGCAGGAGTTTAA+GGG | 0.392051 | 4.1:+21373519 | MS.gene26343:intron |
| AGGATCTCACAGGAAGTTCT+TGG | 0.420484 | 4.1:+21373397 | MS.gene26343:CDS |
| GAAGTTCTTGGTGATGCTTT+GGG | 0.420593 | 4.1:+21373409 | MS.gene26343:CDS |
| ACTCCTTGCTTCCAGATTGA+AGG | 0.422012 | 4.1:+21374984 | MS.gene26343:CDS |
| TGGCTTAGCACTGGATAGTC+TGG | 0.428627 | 4.1:-21375049 | None:intergenic |
| CGCTTCCTTTGGAGTGTCAA+AGG | 0.447165 | 4.1:-21374895 | None:intergenic |
| AACTTGGTTATTGTTAAGAA+AGG | 0.454665 | 4.1:+21374284 | MS.gene26343:CDS |
| TCAACACTCCCTGCTTCATT+GGG | 0.455023 | 4.1:-21373584 | None:intergenic |
| CTGACATCCAGTGGTTGGAT+TGG | 0.459762 | 4.1:-21372679 | None:intergenic |
| TTGTTTGATTGCAGGGAAGA+AGG | 0.460053 | 4.1:+21374837 | MS.gene26343:intron |
| TTGACAGGTTGAACAGCTTA+CGG | 0.462619 | 4.1:-21374379 | None:intergenic |
| AGCAAGAGCCTAACACGGCC+AGG | 0.463109 | 4.1:-21373609 | None:intergenic |
| ACAAGGATTCCCAATGAAGC+AGG | 0.478682 | 4.1:+21373575 | MS.gene26343:CDS |
| TTCTTCTGACATCCAGTGGT+TGG | 0.481727 | 4.1:-21372684 | None:intergenic |
| AAGTTCAAAACAGAGAGGTC+GGG | 0.481755 | 4.1:-21374266 | None:intergenic |
| GCTGCTTATGCTGTGGCAGA+TGG | 0.483327 | 4.1:-21375069 | None:intergenic |
| GCACATCATCATCCTTTGAC+AGG | 0.490483 | 4.1:-21374394 | None:intergenic |
| AATCAGAAACTTACCATCCT+TGG | 0.507683 | 4.1:-21374453 | None:intergenic |
| AACGTTGCCAATCCAACCAC+TGG | 0.507932 | 4.1:+21372672 | MS.gene26343:CDS |
| GCAAGAGCCTAACACGGCCA+GGG | 0.526221 | 4.1:-21373608 | None:intergenic |
| CAAGAATTGCAGACAAGAAG+AGG | 0.527902 | 4.1:+21374920 | MS.gene26343:CDS |
| GGTTATGTCTTCAAGATCAC+TGG | 0.529877 | 4.1:+21373540 | MS.gene26343:CDS |
| AAGCTTCTTCTGACATCCAG+TGG | 0.530433 | 4.1:-21372688 | None:intergenic |
| TATGTCTTCAAGATCACTGG+TGG | 0.541337 | 4.1:+21373543 | MS.gene26343:CDS |
| AAGCAGGGAGTGTTGACCCC+TGG | 0.544754 | 4.1:+21373591 | MS.gene26343:CDS |
| CTTCCGTGTCCACGGAAACA+AGG | 0.545510 | 4.1:-21374194 | None:intergenic |
| TTCTCAACATCAGTAAGCCC+TGG | 0.548857 | 4.1:-21374320 | None:intergenic |
| GCCGTGCTTTCTGGGACAAG+AGG | 0.553103 | 4.1:+21373377 | MS.gene26343:intron |
| CAAGTTCAAAACAGAGAGGT+CGG | 0.553854 | 4.1:-21374267 | None:intergenic |
| GGAACGCCGAAGTGAGAGCT+TGG | 0.554466 | 4.1:+21375014 | MS.gene26343:CDS |
| CTTGTTTCCGTGGACACGGA+AGG | 0.556226 | 4.1:+21374195 | MS.gene26343:CDS |
| CAGAAACTTACCATCCTTGG+TGG | 0.557776 | 4.1:-21374450 | None:intergenic |
| TCCTCTTGTCCCAGAAAGCA+CGG | 0.564472 | 4.1:-21373378 | None:intergenic |
| CGTGGACACGGAAGGCGCAA+TGG | 0.565614 | 4.1:+21374203 | MS.gene26343:CDS |
| ACTCCTTGTTTCCGTGGACA+CGG | 0.569669 | 4.1:+21374191 | MS.gene26343:CDS |
| AGCTCCAAAGATACAACGAT+TGG | 0.570130 | 4.1:+21374867 | MS.gene26343:CDS |
| GCAGGAACTCCTTGTTTCCG+TGG | 0.571103 | 4.1:+21374185 | MS.gene26343:intron |
| CGTAGAAGGAAGTCTGTTCG+TGG | 0.573391 | 4.1:+21374230 | MS.gene26343:CDS |
| GCTCCTTCAATCTGGAAGCA+AGG | 0.577913 | 4.1:-21374987 | None:intergenic |
| CCTTGGTGGTGAAAGTTCTA+CGG | 0.579080 | 4.1:-21374436 | None:intergenic |
| TTCCAGATTGAAGGAGCAGA+GGG | 0.584168 | 4.1:+21374993 | MS.gene26343:CDS |
| CAAGAAGAGGAGAATTGCTA+AGG | 0.587376 | 4.1:+21374933 | MS.gene26343:CDS |
| AGAACTTTCACCACCAAGGA+TGG | 0.589936 | 4.1:+21374440 | MS.gene26343:CDS |
| CATTGCGCCTTCCGTGTCCA+CGG | 0.591891 | 4.1:-21374202 | None:intergenic |
| CTGGGACAAGAGGATCTCAC+AGG | 0.592723 | 4.1:+21373387 | MS.gene26343:CDS |
| TAAGCTGTTCAACCTGTCAA+AGG | 0.594543 | 4.1:+21374382 | MS.gene26343:CDS |
| AGTTCAAAACAGAGAGGTCG+GGG | 0.595017 | 4.1:-21374265 | None:intergenic |
| TTACTGATGTTGAGAAGCCA+AGG | 0.596042 | 4.1:+21374327 | MS.gene26343:CDS |
| GTTGAGAAGCCAAGGATGAG+AGG | 0.601224 | 4.1:+21374335 | MS.gene26343:CDS |
| TGTGGCAGATGGCTTAGCAC+TGG | 0.603451 | 4.1:-21375058 | None:intergenic |
| AAGGTGATAATGATCTTCCA+GGG | 0.607328 | 4.1:+21374303 | MS.gene26343:CDS |
| GTTAGGCTCTTGCTCCATAG+AGG | 0.608724 | 4.1:+21373618 | MS.gene26343:CDS |
| TCACTCCTTTGACACTCCAA+AGG | 0.610174 | 4.1:+21374890 | MS.gene26343:CDS |
| TCTTAGCCAAGCTCTCACTT+CGG | 0.610174 | 4.1:-21375020 | None:intergenic |
| GTGAGAGCTTGGCTAAGAAG+AGG | 0.611225 | 4.1:+21375025 | MS.gene26343:CDS |
| CAAGAGCCTAACACGGCCAG+GGG | 0.618346 | 4.1:-21373607 | None:intergenic |
| CTTCCAGATTGAAGGAGCAG+AGG | 0.620391 | 4.1:+21374992 | MS.gene26343:CDS |
| ATGTCTTCAAGATCACTGGT+GGG | 0.622519 | 4.1:+21373544 | MS.gene26343:CDS |
| GGTGGTGAAAGTTCTACGGT+AGG | 0.627958 | 4.1:-21374432 | None:intergenic |
| CAAGGATTCCCAATGAAGCA+GGG | 0.635106 | 4.1:+21373576 | MS.gene26343:CDS |
| ACTGGTGGGTGTGACAAACA+AGG | 0.636404 | 4.1:+21373558 | MS.gene26343:CDS |
| AATTGCTAAGGCAAAATCAG+AGG | 0.653481 | 4.1:+21374945 | MS.gene26343:CDS |
| GCTGTAAGCTGCTTATGCTG+TGG | 0.655143 | 4.1:-21375076 | None:intergenic |
| CCGTAGAACTTTCACCACCA+AGG | 0.691015 | 4.1:+21374436 | MS.gene26343:CDS |
| TATGGAGCAAGAGCCTAACA+CGG | 0.710814 | 4.1:-21373614 | None:intergenic |
| TAACCAAGTTCAAAACAGAG+AGG | 0.738467 | 4.1:-21374271 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATATATCCTTATATTAA+GGG | + | chr4.1:21374498-21374517 | MS.gene26343:intron | 10.0% |
| !! | CTTTATATATCCTTATATTA+AGG | + | chr4.1:21374497-21374516 | MS.gene26343:intron | 15.0% |
| !! | TATAAGGATATATAAAGAAA+TGG | - | chr4.1:21374494-21374513 | None:intergenic | 15.0% |
| !! | AAGAATATTACTTTCATTGA+AGG | + | chr4.1:21374658-21374677 | MS.gene26343:intron | 20.0% |
| !! | ACATGAGATAAATAGTAAAA+TGG | - | chr4.1:21373787-21373806 | None:intergenic | 20.0% |
| !! | CAGAAAATTGAAAAGAATTT+CGG | - | chr4.1:21372866-21372885 | None:intergenic | 20.0% |
| !! | TAAATAGATTGAAGATTTGA+AGG | - | chr4.1:21373659-21373678 | None:intergenic | 20.0% |
| !! | TAGCTTATGAAAATAGTTTA+TGG | + | chr4.1:21373120-21373139 | MS.gene26343:intron | 20.0% |
| !!! | TTAAGTTGTTTATCAAAACA+AGG | + | chr4.1:21373253-21373272 | MS.gene26343:intron | 20.0% |
| !!! | TTTTTGTGAAGTTATTTATG+TGG | + | chr4.1:21373316-21373335 | MS.gene26343:intron | 20.0% |
| ! | AAAAAAAAATGCTACCTCTA+TGG | - | chr4.1:21373635-21373654 | None:intergenic | 25.0% |
| ! | AACAATAATCATTGTGATCA+TGG | - | chr4.1:21374055-21374074 | None:intergenic | 25.0% |
| ! | AACTTGGTTATTGTTAAGAA+AGG | + | chr4.1:21374284-21374303 | MS.gene26343:CDS | 25.0% |
| ! | AGAACAAAAATGAATACAAG+TGG | - | chr4.1:21374600-21374619 | None:intergenic | 25.0% |
| ! | ATATATCCTTATATTAAGGG+TGG | + | chr4.1:21374501-21374520 | MS.gene26343:intron | 25.0% |
| ! | CGTTCATAAATTTATAGTAG+TGG | + | chr4.1:21373738-21373757 | MS.gene26343:intron | 25.0% |
| ! | CTTAGTATTTCATTATTTGC+AGG | + | chr4.1:21374114-21374133 | MS.gene26343:intron | 25.0% |
| ! | GCAAATAATGAAATACTAAG+TGG | - | chr4.1:21374114-21374133 | None:intergenic | 25.0% |
| ! | GTAATGAATTGTAATCTTAG+TGG | + | chr4.1:21374811-21374830 | MS.gene26343:intron | 25.0% |
| ! | GTTATCTCTAATATTACATG+TGG | - | chr4.1:21373869-21373888 | None:intergenic | 25.0% |
| ! | TCATAAATTTATAGTAGTGG+AGG | + | chr4.1:21373741-21373760 | MS.gene26343:intron | 25.0% |
| ! | TCATCCAAAACTATTTAACT+AGG | - | chr4.1:21373949-21373968 | None:intergenic | 25.0% |
| ! | TCTTCAATCTATTTACCTTT+CGG | + | chr4.1:21373664-21373683 | MS.gene26343:intron | 25.0% |
| ! | TTACAATGCTCTACAAAATA+AGG | - | chr4.1:21373475-21373494 | None:intergenic | 25.0% |
| ! | TTCATTACAAATGTCTGTAT+TGG | - | chr4.1:21374799-21374818 | None:intergenic | 25.0% |
| !! | ACTATTTTCATAAGCTATCT+TGG | - | chr4.1:21373117-21373136 | None:intergenic | 25.0% |
| !! | AGTTCTTTTCATAAAGTTAG+TGG | - | chr4.1:21373917-21373936 | None:intergenic | 25.0% |
| !! | CATTGTCATTTATCTGAATT+TGG | + | chr4.1:21372980-21372999 | MS.gene26343:intron | 25.0% |
| !!! | ATTTGGTTTGAACTGATATT+TGG | + | chr4.1:21372997-21373016 | MS.gene26343:intron | 25.0% |
| !!! | TCAATATGTTTTGATATGCA+TGG | + | chr4.1:21372948-21372967 | MS.gene26343:intron | 25.0% |
| !!! | TTAAATAGTTTTGGATGAGT+GGG | + | chr4.1:21373951-21373970 | MS.gene26343:intron | 25.0% |
| !!! | TTTATTTTATCGTGTGTAGT+AGG | + | chr4.1:21373165-21373184 | MS.gene26343:intron | 25.0% |
| ACAAAAATGAATACAAGTGG+AGG | - | chr4.1:21374597-21374616 | None:intergenic | 30.0% | |
| ACAGTATACATTGTCTAGAT+TGG | + | chr4.1:21374693-21374712 | MS.gene26343:intron | 30.0% | |
| AGTATACATTGTCTAGATTG+GGG | + | chr4.1:21374695-21374714 | MS.gene26343:intron | 30.0% | |
| ATATGACTGTAGTGTAAATC+TGG | + | chr4.1:21372916-21372935 | MS.gene26343:intron | 30.0% | |
| CAGTATACATTGTCTAGATT+GGG | + | chr4.1:21374694-21374713 | MS.gene26343:intron | 30.0% | |
| CCAAAACTATTTAACTAGGA+GGG | - | chr4.1:21373945-21373964 | None:intergenic | 30.0% | |
| CCAACATAGATTTATGAACA+TGG | - | chr4.1:21372822-21372841 | None:intergenic | 30.0% | |
| CCATGTTCATAAATCTATGT+TGG | + | chr4.1:21372819-21372838 | MS.gene26343:intron | 30.0% | |
| GAAAATGAAGAGAGAGTAAA+TGG | - | chr4.1:21372745-21372764 | None:intergenic | 30.0% | |
| GTGAACTTGTAGAAATAAGT+TGG | - | chr4.1:21373095-21373114 | None:intergenic | 30.0% | |
| TCCAAAACTATTTAACTAGG+AGG | - | chr4.1:21373946-21373965 | None:intergenic | 30.0% | |
| TTGCCTCTTAGTATTACTAT+CGG | + | chr4.1:21373712-21373731 | MS.gene26343:intron | 30.0% | |
| ! | GCATATGTAGTTATTTCAGT+AGG | + | chr4.1:21373835-21373854 | MS.gene26343:intron | 30.0% |
| ! | GTGATTTTGCATTGGATTAT+TGG | + | chr4.1:21373805-21373824 | MS.gene26343:intron | 30.0% |
| ! | TATCTCATGTGATTTTGCAT+TGG | + | chr4.1:21373797-21373816 | MS.gene26343:intron | 30.0% |
| ! | TGTAGAAATAAGTTGGAAAC+AGG | - | chr4.1:21373088-21373107 | None:intergenic | 30.0% |
| ! | TTATGCATTTTGCATTTTGC+AGG | + | chr4.1:21374167-21374186 | MS.gene26343:intron | 30.0% |
| !! | CTGTATTGGTACAATTTTAC+CGG | - | chr4.1:21374785-21374804 | None:intergenic | 30.0% |
| !!! | GTTAAATAGTTTTGGATGAG+TGG | + | chr4.1:21373950-21373969 | MS.gene26343:intron | 30.0% |
| AAAAAATCCATGCCATAGTG+AGG | + | chr4.1:21373995-21374014 | MS.gene26343:intron | 35.0% | |
| AAAAATCCATGCCATAGTGA+GGG | + | chr4.1:21373996-21374015 | MS.gene26343:intron | 35.0% | |
| AAACAGTTGTCCAAACTACT+AGG | + | chr4.1:21374561-21374580 | MS.gene26343:intron | 35.0% | |
| AACAGTTGTCCAAACTACTA+GGG | + | chr4.1:21374562-21374581 | MS.gene26343:intron | 35.0% | |
| AATCAGAAACTTACCATCCT+TGG | - | chr4.1:21374456-21374475 | None:intergenic | 35.0% | |
| AATCGCAAATTGTGAGGAAA+CGG | - | chr4.1:21374747-21374766 | None:intergenic | 35.0% | |
| AATTGCTAAGGCAAAATCAG+AGG | + | chr4.1:21374945-21374964 | MS.gene26343:CDS | 35.0% | |
| AGAAATGGTTACGATATTCG+TGG | - | chr4.1:21374479-21374498 | None:intergenic | 35.0% | |
| ATCCTTATATTAAGGGTGGT+GGG | + | chr4.1:21374505-21374524 | MS.gene26343:intron | 35.0% | |
| CTAAACAAACCAATCCAAAC+AGG | - | chr4.1:21373025-21373044 | None:intergenic | 35.0% | |
| TAACCAAGTTCAAAACAGAG+AGG | - | chr4.1:21374274-21374293 | None:intergenic | 35.0% | |
| TATCCTTATATTAAGGGTGG+TGG | + | chr4.1:21374504-21374523 | MS.gene26343:intron | 35.0% | |
| TCTCCGATAGTAATACTAAG+AGG | - | chr4.1:21373718-21373737 | None:intergenic | 35.0% | |
| TGGGAAACATGCATATAGTA+TGG | + | chr4.1:21373970-21373989 | MS.gene26343:intron | 35.0% | |
| ! | AAAGGTGATAATGATCTTCC+AGG | + | chr4.1:21374302-21374321 | MS.gene26343:CDS | 35.0% |
| ! | AAGGTGATAATGATCTTCCA+GGG | + | chr4.1:21374303-21374322 | MS.gene26343:CDS | 35.0% |
| ! | CCCTCCTAGTTAAATAGTTT+TGG | + | chr4.1:21373942-21373961 | MS.gene26343:intron | 35.0% |
| ! | GAGTAAGCTTCTTTTCTACT+TGG | + | chr4.1:21374136-21374155 | MS.gene26343:intron | 35.0% |
| AAACGGCACTTCTTTCAAAC+GGG | - | chr4.1:21374730-21374749 | None:intergenic | 40.0% | |
| AAGGACAATCGCAAATTGTG+AGG | - | chr4.1:21374753-21374772 | None:intergenic | 40.0% | |
| AAGTTCAAAACAGAGAGGTC+GGG | - | chr4.1:21374269-21374288 | None:intergenic | 40.0% | |
| ACAGTTGTCCAAACTACTAG+GGG | + | chr4.1:21374563-21374582 | MS.gene26343:intron | 40.0% | |
| AGCTCCAAAGATACAACGAT+TGG | + | chr4.1:21374867-21374886 | MS.gene26343:CDS | 40.0% | |
| ATGTCTTCAAGATCACTGGT+GGG | + | chr4.1:21373544-21373563 | MS.gene26343:CDS | 40.0% | |
| CAAGAAGAGGAGAATTGCTA+AGG | + | chr4.1:21374933-21374952 | MS.gene26343:CDS | 40.0% | |
| CAAGAATTGCAGACAAGAAG+AGG | + | chr4.1:21374920-21374939 | MS.gene26343:CDS | 40.0% | |
| CAAGTTCAAAACAGAGAGGT+CGG | - | chr4.1:21374270-21374289 | None:intergenic | 40.0% | |
| GAAACGGCACTTCTTTCAAA+CGG | - | chr4.1:21374731-21374750 | None:intergenic | 40.0% | |
| GGTTATGTCTTCAAGATCAC+TGG | + | chr4.1:21373540-21373559 | MS.gene26343:CDS | 40.0% | |
| GTGACCAATCGTTGTATCTT+TGG | - | chr4.1:21374874-21374893 | None:intergenic | 40.0% | |
| TAAAGTTAGTGGAGACGTTG+AGG | - | chr4.1:21373906-21373925 | None:intergenic | 40.0% | |
| TAAGCTGTTCAACCTGTCAA+AGG | + | chr4.1:21374382-21374401 | MS.gene26343:CDS | 40.0% | |
| TATGTCTTCAAGATCACTGG+TGG | + | chr4.1:21373543-21373562 | MS.gene26343:CDS | 40.0% | |
| TCCTTATATTAAGGGTGGTG+GGG | + | chr4.1:21374506-21374525 | MS.gene26343:intron | 40.0% | |
| TTACTGATGTTGAGAAGCCA+AGG | + | chr4.1:21374327-21374346 | MS.gene26343:CDS | 40.0% | |
| TTGTTTGATTGCAGGGAAGA+AGG | + | chr4.1:21374837-21374856 | MS.gene26343:intron | 40.0% | |
| ! | ACTGATATTTGGAGCCTGTT+TGG | + | chr4.1:21373008-21373027 | MS.gene26343:intron | 40.0% |
| ! | ATTTTACCGGATGTCACTGA+AGG | - | chr4.1:21374772-21374791 | None:intergenic | 40.0% |
| ! | GTTGAACAGCTTACGGATTT+TGG | - | chr4.1:21374375-21374394 | None:intergenic | 40.0% |
| ! | TATTTGGAGCCTGTTTGGAT+TGG | + | chr4.1:21373013-21373032 | MS.gene26343:intron | 40.0% |
| ! | TTGACAGGTTGAACAGCTTA+CGG | - | chr4.1:21374382-21374401 | None:intergenic | 40.0% |
| !! | AGTGGTTGTTGTTTGATTGC+AGG | + | chr4.1:21374829-21374848 | MS.gene26343:intron | 40.0% |
| !! | GAAGTTCTTGGTGATGCTTT+GGG | + | chr4.1:21373409-21373428 | MS.gene26343:CDS | 40.0% |
| !! | GTGGTTGTTGTTTGATTGCA+GGG | + | chr4.1:21374830-21374849 | MS.gene26343:intron | 40.0% |
| AAGCTTCTTCTGACATCCAG+TGG | - | chr4.1:21372691-21372710 | None:intergenic | 45.0% | |
| ACAAGGATTCCCAATGAAGC+AGG | + | chr4.1:21373575-21373594 | MS.gene26343:CDS | 45.0% | |
| ACTCCTTGCTTCCAGATTGA+AGG | + | chr4.1:21374984-21375003 | MS.gene26343:CDS | 45.0% | |
| AGAACTTTCACCACCAAGGA+TGG | + | chr4.1:21374440-21374459 | MS.gene26343:CDS | 45.0% | |
| AGGATCTCACAGGAAGTTCT+TGG | + | chr4.1:21373397-21373416 | MS.gene26343:CDS | 45.0% | |
| AGTTCAAAACAGAGAGGTCG+GGG | - | chr4.1:21374268-21374287 | None:intergenic | 45.0% | |
| ATATTGCAGCCGTGCTTTCT+GGG | + | chr4.1:21373369-21373388 | MS.gene26343:intron | 45.0% | |
| CAAGGATTCCCAATGAAGCA+GGG | + | chr4.1:21373576-21373595 | MS.gene26343:CDS | 45.0% | |
| CAATTCTTGCTCGCTTCCTT+TGG | - | chr4.1:21374909-21374928 | None:intergenic | 45.0% | |
| CAGAAACTTACCATCCTTGG+TGG | - | chr4.1:21374453-21374472 | None:intergenic | 45.0% | |
| CTATGAAGCCCCTAGTAGTT+TGG | - | chr4.1:21374574-21374593 | None:intergenic | 45.0% | |
| GATTGTCCTTCAGTGACATC+CGG | + | chr4.1:21374763-21374782 | MS.gene26343:intron | 45.0% | |
| GCAACATACAGTATGCCGAA+AGG | - | chr4.1:21373682-21373701 | None:intergenic | 45.0% | |
| GCACATCATCATCCTTTGAC+AGG | - | chr4.1:21374397-21374416 | None:intergenic | 45.0% | |
| TATATTGCAGCCGTGCTTTC+TGG | + | chr4.1:21373368-21373387 | MS.gene26343:intron | 45.0% | |
| TATGGAGCAAGAGCCTAACA+CGG | - | chr4.1:21373617-21373636 | None:intergenic | 45.0% | |
| TCAACACTCCCTGCTTCATT+GGG | - | chr4.1:21373587-21373606 | None:intergenic | 45.0% | |
| TCACTCCTTTGACACTCCAA+AGG | + | chr4.1:21374890-21374909 | MS.gene26343:CDS | 45.0% | |
| TCTTAGCCAAGCTCTCACTT+CGG | - | chr4.1:21375023-21375042 | None:intergenic | 45.0% | |
| TGCTCTCTGCAGGAGTTTAA+GGG | + | chr4.1:21373519-21373538 | MS.gene26343:intron | 45.0% | |
| TTCCAGATTGAAGGAGCAGA+GGG | + | chr4.1:21374993-21375012 | MS.gene26343:CDS | 45.0% | |
| TTCTCAACATCAGTAAGCCC+TGG | - | chr4.1:21374323-21374342 | None:intergenic | 45.0% | |
| TTCTTCTGACATCCAGTGGT+TGG | - | chr4.1:21372687-21372706 | None:intergenic | 45.0% | |
| TTGCTCTCTGCAGGAGTTTA+AGG | + | chr4.1:21373518-21373537 | MS.gene26343:intron | 45.0% | |
| ! | CCTTATATTAAGGGTGGTGG+GGG | + | chr4.1:21374507-21374526 | MS.gene26343:intron | 45.0% |
| ! | CGGATTTTGGATGCTCTCTT+AGG | - | chr4.1:21374362-21374381 | None:intergenic | 45.0% |
| ! | GTTGTGATTTTGCTCTCTGC+AGG | + | chr4.1:21373509-21373528 | MS.gene26343:intron | 45.0% |
| ! | TGGAGACGTTGAGGTATTTG+TGG | - | chr4.1:21373897-21373916 | None:intergenic | 45.0% |
| !! | CCTTGGTGGTGAAAGTTCTA+CGG | - | chr4.1:21374439-21374458 | None:intergenic | 45.0% |
| !! | CGACCTCTCTGTTTTGAACT+TGG | + | chr4.1:21374268-21374287 | MS.gene26343:CDS | 45.0% |
| !! | GGAAGTTCTTGGTGATGCTT+TGG | + | chr4.1:21373408-21373427 | MS.gene26343:CDS | 45.0% |
| AACGTTGCCAATCCAACCAC+TGG | + | chr4.1:21372672-21372691 | MS.gene26343:CDS | 50.0% | |
| ATCATGGACAGCCCTACCTT+AGG | - | chr4.1:21374039-21374058 | None:intergenic | 50.0% | |
| CCCCCACCACCCTTAATATA+AGG | - | chr4.1:21374510-21374529 | None:intergenic | 50.0% | |
| CCGTAGAACTTTCACCACCA+AGG | + | chr4.1:21374436-21374455 | MS.gene26343:CDS | 50.0% | |
| CGTAGAAGGAAGTCTGTTCG+TGG | + | chr4.1:21374230-21374249 | MS.gene26343:CDS | 50.0% | |
| CTCTTAGGACCTCTCATCCT+TGG | - | chr4.1:21374347-21374366 | None:intergenic | 50.0% | |
| CTGACATCCAGTGGTTGGAT+TGG | - | chr4.1:21372682-21372701 | None:intergenic | 50.0% | |
| CTTCCAGATTGAAGGAGCAG+AGG | + | chr4.1:21374992-21375011 | MS.gene26343:CDS | 50.0% | |
| GCTCCTTCAATCTGGAAGCA+AGG | - | chr4.1:21374990-21375009 | None:intergenic | 50.0% | |
| GGTGGTGAAAGTTCTACGGT+AGG | - | chr4.1:21374435-21374454 | None:intergenic | 50.0% | |
| GTCAACACTCCCTGCTTCAT+TGG | - | chr4.1:21373588-21373607 | None:intergenic | 50.0% | |
| GTGAGAGCTTGGCTAAGAAG+AGG | + | chr4.1:21375025-21375044 | MS.gene26343:CDS | 50.0% | |
| GTTAGGCTCTTGCTCCATAG+AGG | + | chr4.1:21373618-21373637 | MS.gene26343:CDS | 50.0% | |
| GTTGAGAAGCCAAGGATGAG+AGG | + | chr4.1:21374335-21374354 | MS.gene26343:CDS | 50.0% | |
| TCATGGACAGCCCTACCTTA+GGG | - | chr4.1:21374038-21374057 | None:intergenic | 50.0% | |
| TCCTCTTGTCCCAGAAAGCA+CGG | - | chr4.1:21373381-21373400 | None:intergenic | 50.0% | |
| TTCCCTCTGCTCCTTCAATC+TGG | - | chr4.1:21374998-21375017 | None:intergenic | 50.0% | |
| ! | ACTCCTTGTTTCCGTGGACA+CGG | + | chr4.1:21374191-21374210 | MS.gene26343:CDS | 50.0% |
| ! | ACTGGTGGGTGTGACAAACA+AGG | + | chr4.1:21373558-21373577 | MS.gene26343:CDS | 50.0% |
| ! | TGGCTTAGCACTGGATAGTC+TGG | - | chr4.1:21375052-21375071 | None:intergenic | 50.0% |
| !! | CGCTTCCTTTGGAGTGTCAA+AGG | - | chr4.1:21374898-21374917 | None:intergenic | 50.0% |
| CATGGACAGCCCTACCTTAG+GGG | - | chr4.1:21374037-21374056 | None:intergenic | 55.0% | |
| CTGGGACAAGAGGATCTCAC+AGG | + | chr4.1:21373387-21373406 | MS.gene26343:CDS | 55.0% | |
| CTTCCGTGTCCACGGAAACA+AGG | - | chr4.1:21374197-21374216 | None:intergenic | 55.0% | |
| CTTGTTTCCGTGGACACGGA+AGG | + | chr4.1:21374195-21374214 | MS.gene26343:CDS | 55.0% | |
| TGTGGCAGATGGCTTAGCAC+TGG | - | chr4.1:21375061-21375080 | None:intergenic | 55.0% | |
| ! | GCAGGAACTCCTTGTTTCCG+TGG | + | chr4.1:21374185-21374204 | MS.gene26343:intron | 55.0% |
| AGCAAGAGCCTAACACGGCC+AGG | - | chr4.1:21373612-21373631 | None:intergenic | 60.0% | |
| CAAGAGCCTAACACGGCCAG+GGG | - | chr4.1:21373610-21373629 | None:intergenic | 60.0% | |
| CATTGCGCCTTCCGTGTCCA+CGG | - | chr4.1:21374205-21374224 | None:intergenic | 60.0% | |
| CCATGCCATAGTGAGGGCCA+AGG | + | chr4.1:21374002-21374021 | MS.gene26343:intron | 60.0% | |
| CCCACACCTCCCCTAAGGTA+GGG | + | chr4.1:21374025-21374044 | MS.gene26343:intron | 60.0% | |
| CCTTGGCCCTCACTATGGCA+TGG | - | chr4.1:21374005-21374024 | None:intergenic | 60.0% | |
| GCAAGAGCCTAACACGGCCA+GGG | - | chr4.1:21373611-21373630 | None:intergenic | 60.0% | |
| GGAACGCCGAAGTGAGAGCT+TGG | + | chr4.1:21375014-21375033 | MS.gene26343:CDS | 60.0% | |
| TGTTGACCCCTGGCCGTGTT+AGG | + | chr4.1:21373601-21373620 | MS.gene26343:CDS | 60.0% | |
| ! | CCCTACCTTAGGGGAGGTGT+GGG | - | chr4.1:21374028-21374047 | None:intergenic | 60.0% |
| ! | GGCGCAATGGAGAGCGTAGA+AGG | + | chr4.1:21374216-21374235 | MS.gene26343:CDS | 60.0% |
| !! | AAGCAGGGAGTGTTGACCCC+TGG | + | chr4.1:21373591-21373610 | MS.gene26343:CDS | 60.0% |
| !! | GCCGTGCTTTCTGGGACAAG+AGG | + | chr4.1:21373377-21373396 | MS.gene26343:intron | 60.0% |
| CAAGGCCCACACCTCCCCTA+AGG | + | chr4.1:21374020-21374039 | MS.gene26343:intron | 65.0% | |
| GCCCACACCTCCCCTAAGGT+AGG | + | chr4.1:21374024-21374043 | MS.gene26343:intron | 65.0% | |
| GCCCTACCTTAGGGGAGGTG+TGG | - | chr4.1:21374029-21374048 | None:intergenic | 65.0% | |
| GGACAGCCCTACCTTAGGGG+AGG | - | chr4.1:21374034-21374053 | None:intergenic | 65.0% | |
| GTGGGCCTTGGCCCTCACTA+TGG | - | chr4.1:21374010-21374029 | None:intergenic | 65.0% | |
| ! | CGTGGACACGGAAGGCGCAA+TGG | + | chr4.1:21374203-21374222 | MS.gene26343:CDS | 65.0% |
| ! | CTTAGGGGAGGTGTGGGCCT+TGG | - | chr4.1:21374022-21374041 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 21372573 | 21375086 | 21372573 | ID=MS.gene26343 |
| chr4.1 | mRNA | 21372573 | 21375086 | 21372573 | ID=MS.gene26343.t1;Parent=MS.gene26343 |
| chr4.1 | exon | 21372573 | 21372578 | 21372573 | ID=MS.gene26343.t1.exon1;Parent=MS.gene26343.t1 |
| chr4.1 | CDS | 21372573 | 21372578 | 21372573 | ID=cds.MS.gene26343.t1;Parent=MS.gene26343.t1 |
| chr4.1 | exon | 21372669 | 21372733 | 21372669 | ID=MS.gene26343.t1.exon2;Parent=MS.gene26343.t1 |
| chr4.1 | CDS | 21372669 | 21372733 | 21372669 | ID=cds.MS.gene26343.t1;Parent=MS.gene26343.t1 |
| chr4.1 | exon | 21373378 | 21373435 | 21373378 | ID=MS.gene26343.t1.exon3;Parent=MS.gene26343.t1 |
| chr4.1 | CDS | 21373378 | 21373435 | 21373378 | ID=cds.MS.gene26343.t1;Parent=MS.gene26343.t1 |
| chr4.1 | exon | 21373531 | 21373639 | 21373531 | ID=MS.gene26343.t1.exon4;Parent=MS.gene26343.t1 |
| chr4.1 | CDS | 21373531 | 21373639 | 21373531 | ID=cds.MS.gene26343.t1;Parent=MS.gene26343.t1 |
| chr4.1 | exon | 21374189 | 21374461 | 21374189 | ID=MS.gene26343.t1.exon5;Parent=MS.gene26343.t1 |
| chr4.1 | CDS | 21374189 | 21374461 | 21374189 | ID=cds.MS.gene26343.t1;Parent=MS.gene26343.t1 |
| chr4.1 | exon | 21374851 | 21375086 | 21374851 | ID=MS.gene26343.t1.exon6;Parent=MS.gene26343.t1 |
| chr4.1 | CDS | 21374851 | 21375086 | 21374851 | ID=cds.MS.gene26343.t1;Parent=MS.gene26343.t1 |
| Gene Sequence |
| Protein sequence |
