Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31991.t1 | XP_013457002.1 | 100 | 248 | 0 | 0 | 1 | 248 | 1 | 248 | 5.30E-132 | 480.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31991.t1 | O48549 | 91.6 | 250 | 19 | 1 | 1 | 248 | 1 | 250 | 3.3e-122 | 439.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31991.t1 | I3S1W3 | 100.0 | 248 | 0 | 0 | 1 | 248 | 1 | 248 | 3.8e-132 | 480.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050134 | MS.gene31991 | 0.824235 | 9.01E-54 | -1.69E-46 |
| MS.gene050252 | MS.gene31991 | 0.821797 | 3.34E-53 | -1.69E-46 |
| MS.gene050290 | MS.gene31991 | 0.837132 | 6.22E-57 | -1.69E-46 |
| MS.gene050791 | MS.gene31991 | 0.893878 | 4.17E-75 | -1.69E-46 |
| MS.gene050912 | MS.gene31991 | 0.831552 | 1.57E-55 | -1.69E-46 |
| MS.gene051963 | MS.gene31991 | 0.814862 | 1.24E-51 | -1.69E-46 |
| MS.gene051984 | MS.gene31991 | 0.812259 | 4.64E-51 | -1.69E-46 |
| MS.gene052412 | MS.gene31991 | 0.818909 | 1.53E-52 | -1.69E-46 |
| MS.gene053224 | MS.gene31991 | 0.839767 | 1.30E-57 | -1.69E-46 |
| MS.gene054937 | MS.gene31991 | 0.815235 | 1.03E-51 | -1.69E-46 |
| MS.gene056257 | MS.gene31991 | 0.805073 | 1.59E-49 | -1.69E-46 |
| MS.gene056917 | MS.gene31991 | 0.849802 | 2.56E-60 | -1.69E-46 |
| MS.gene057052 | MS.gene31991 | 0.802229 | 6.20E-49 | -1.69E-46 |
| MS.gene057092 | MS.gene31991 | 0.836825 | 7.46E-57 | -1.69E-46 |
| MS.gene057165 | MS.gene31991 | 0.802992 | 4.31E-49 | -1.69E-46 |
| MS.gene057272 | MS.gene31991 | 0.863836 | 1.87E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene31991 | MS.gene023381 | PPI |
| MS.gene31991 | MS.gene01449 | PPI |
| MS.gene31991 | MS.gene26343 | PPI |
| MS.gene31991 | MS.gene051272 | PPI |
| MS.gene31991 | MS.gene023037 | PPI |
| MS.gene31991 | MS.gene01066 | PPI |
| MS.gene31991 | MS.gene08259 | PPI |
| MS.gene01066 | MS.gene31991 | PPI |
| MS.gene31991 | MS.gene09188 | PPI |
| MS.gene31991 | MS.gene002470 | PPI |
| MS.gene31991 | MS.gene08260 | PPI |
| MS.gene31991 | MS.gene027347 | PPI |
| MS.gene31991 | MS.gene011048 | PPI |
| MS.gene31991 | MS.gene39485 | PPI |
| MS.gene31991 | MS.gene09046 | PPI |
| MS.gene31991 | MS.gene09187 | PPI |
| MS.gene31991 | MS.gene33828 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31991.t1 | MTR_4g088595 | 100.000 | 248 | 0 | 0 | 1 | 248 | 1 | 248 | 0.0 | 501 |
| MS.gene31991.t1 | MTR_7g053160 | 96.774 | 248 | 8 | 0 | 1 | 248 | 1 | 248 | 4.65e-177 | 486 |
| MS.gene31991.t1 | MTR_2g014030 | 96.774 | 248 | 8 | 0 | 1 | 248 | 1 | 248 | 2.02e-176 | 485 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31991.t1 | AT5G10360 | 91.968 | 249 | 18 | 1 | 1 | 247 | 1 | 249 | 7.41e-165 | 456 |
| MS.gene31991.t1 | AT4G31700 | 91.600 | 250 | 19 | 1 | 1 | 248 | 1 | 250 | 1.33e-157 | 437 |
| MS.gene31991.t1 | AT5G10360 | 73.896 | 249 | 11 | 2 | 1 | 247 | 1 | 197 | 4.09e-120 | 340 |
| MS.gene31991.t1 | AT4G31700 | 90.957 | 188 | 15 | 1 | 63 | 248 | 1 | 188 | 2.59e-109 | 313 |
Find 80 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATATTGCAGCCGTGCTTTC+TGG | 0.027256 | 4.3:+24641858 | MS.gene31991:intron |
| TTGCTCTCTGCAGGAGTTTA+AGG | 0.158668 | 4.3:+24642008 | MS.gene31991:intron |
| GTTGAACAGCTTACGGATTT+TGG | 0.198177 | 4.3:-24642856 | None:intergenic |
| CAATTCTTGCTCGCTTCCTT+TGG | 0.278075 | 4.3:-24643391 | None:intergenic |
| GTGACCAATCGTTGTATCTT+TGG | 0.296066 | 4.3:-24643356 | None:intergenic |
| GGAAGTTCTTGGTGATGCTT+TGG | 0.339745 | 4.3:+24641898 | MS.gene31991:CDS |
| ATATTGCAGCCGTGCTTTCT+GGG | 0.350681 | 4.3:+24641859 | MS.gene31991:intron |
| TTCCCTCTGCTCCTTCAATC+TGG | 0.366847 | 4.3:-24643480 | None:intergenic |
| CTCTTAGGACCTCTCATCCT+TGG | 0.367925 | 4.3:-24642828 | None:intergenic |
| AAAGGTGATAATGATCTTCC+AGG | 0.375447 | 4.3:+24642786 | MS.gene31991:CDS |
| GTCAACACTCCCTGCTTCAT+TGG | 0.384872 | 4.3:-24642075 | None:intergenic |
| TGTTGACCCCTGGCCGTGTT+AGG | 0.390290 | 4.3:+24642091 | MS.gene31991:CDS |
| GGCGCAATGGAGAGCGTAGA+AGG | 0.390771 | 4.3:+24642700 | MS.gene31991:CDS |
| TGCTCTCTGCAGGAGTTTAA+GGG | 0.392051 | 4.3:+24642009 | MS.gene31991:intron |
| AGGATCTCACAGGAAGTTCT+TGG | 0.420484 | 4.3:+24641887 | MS.gene31991:CDS |
| GAAGTTCTTGGTGATGCTTT+GGG | 0.420593 | 4.3:+24641899 | MS.gene31991:CDS |
| ACTCCTTGCTTCCAGATTGA+AGG | 0.422012 | 4.3:+24643469 | MS.gene31991:CDS |
| TGGCTTAGCACTGGATAGTC+TGG | 0.428627 | 4.3:-24643534 | None:intergenic |
| TTCTTGCTCGCTTCCTTTGG+AGG | 0.436168 | 4.3:-24643388 | None:intergenic |
| CGCTTCCTTTGGAGGGTCAA+AGG | 0.448439 | 4.3:-24643380 | None:intergenic |
| TCAACACTCCCTGCTTCATT+GGG | 0.455023 | 4.3:-24642074 | None:intergenic |
| CTGACATCCAGTGGTTGGAT+TGG | 0.459762 | 4.3:-24641171 | None:intergenic |
| TTGTTTGATTGCAGGGAAGA+AGG | 0.460053 | 4.3:+24643322 | MS.gene31991:intron |
| TTGACAGGTTGAACAGCTTA+CGG | 0.462619 | 4.3:-24642863 | None:intergenic |
| AGCAAGAGCCTAACACGGCC+AGG | 0.463109 | 4.3:-24642099 | None:intergenic |
| ACAAGGATTCCCAATGAAGC+AGG | 0.478682 | 4.3:+24642065 | MS.gene31991:CDS |
| TTCTTCTGACATCCAGTGGT+TGG | 0.481727 | 4.3:-24641176 | None:intergenic |
| AAGTTCAAAACAGAGAGGTC+GGG | 0.481755 | 4.3:-24642750 | None:intergenic |
| GCTGCTTATGCTGTGGCAGA+TGG | 0.483327 | 4.3:-24643554 | None:intergenic |
| GCACATCATCATCCTTTGAC+AGG | 0.490483 | 4.3:-24642878 | None:intergenic |
| AACTTGGTTATTGTGAAGAA+AGG | 0.498754 | 4.3:+24642768 | MS.gene31991:CDS |
| AATCAGAAACTTACCATCCT+TGG | 0.507683 | 4.3:-24642937 | None:intergenic |
| AACGTTGCCAATCCAACCAC+TGG | 0.507932 | 4.3:+24641164 | MS.gene31991:CDS |
| TCTTGCTCGCTTCCTTTGGA+GGG | 0.509236 | 4.3:-24643387 | None:intergenic |
| GCAAGAGCCTAACACGGCCA+GGG | 0.526221 | 4.3:-24642098 | None:intergenic |
| GGTTATGTCTTCAAGATCAC+TGG | 0.529877 | 4.3:+24642030 | MS.gene31991:CDS |
| AAGCTTCTTCTGACATCCAG+TGG | 0.530433 | 4.3:-24641180 | None:intergenic |
| TATGTCTTCAAGATCACTGG+TGG | 0.541337 | 4.3:+24642033 | MS.gene31991:CDS |
| AAGCAGGGAGTGTTGACCCC+TGG | 0.544754 | 4.3:+24642081 | MS.gene31991:CDS |
| CTTCCGTGTCCACGGAAACA+AGG | 0.545510 | 4.3:-24642678 | None:intergenic |
| TTCTCAACATCAGTAAGCCC+TGG | 0.548857 | 4.3:-24642804 | None:intergenic |
| GCCGTGCTTTCTGGGACAAG+AGG | 0.553103 | 4.3:+24641867 | MS.gene31991:intron |
| CAAGTTCAAAACAGAGAGGT+CGG | 0.553854 | 4.3:-24642751 | None:intergenic |
| GGAACGCCGAAGTGAGAGCT+TGG | 0.554466 | 4.3:+24643499 | MS.gene31991:CDS |
| CTTGTTTCCGTGGACACGGA+AGG | 0.556226 | 4.3:+24642679 | MS.gene31991:CDS |
| GCAGGAACTCCTTGTTTCCG+TGG | 0.557291 | 4.3:+24642669 | MS.gene31991:intron |
| CAGAAACTTACCATCCTTGG+TGG | 0.557776 | 4.3:-24642934 | None:intergenic |
| CAAGAAGAAGAGAATTGCTA+AGG | 0.559648 | 4.3:+24643418 | MS.gene31991:CDS |
| TCCTCTTGTCCCAGAAAGCA+CGG | 0.564472 | 4.3:-24641868 | None:intergenic |
| CGTGGACACGGAAGGCGCAA+TGG | 0.565614 | 4.3:+24642687 | MS.gene31991:CDS |
| ACTCCTTGTTTCCGTGGACA+CGG | 0.569669 | 4.3:+24642675 | MS.gene31991:CDS |
| AGCTCCAAAGATACAACGAT+TGG | 0.570130 | 4.3:+24643352 | MS.gene31991:CDS |
| TCACTCCTTTGACCCTCCAA+AGG | 0.572684 | 4.3:+24643375 | MS.gene31991:CDS |
| CGTAGAAGGAAGTCTGTTCG+TGG | 0.573391 | 4.3:+24642714 | MS.gene31991:CDS |
| GCTCCTTCAATCTGGAAGCA+AGG | 0.577913 | 4.3:-24643472 | None:intergenic |
| CCTTGGTGGTGAAAGTTCTA+CGG | 0.579080 | 4.3:-24642920 | None:intergenic |
| TTCCAGATTGAAGGAGCAGA+GGG | 0.584168 | 4.3:+24643478 | MS.gene31991:CDS |
| AGAACTTTCACCACCAAGGA+TGG | 0.589936 | 4.3:+24642924 | MS.gene31991:CDS |
| CATTGCGCCTTCCGTGTCCA+CGG | 0.591891 | 4.3:-24642686 | None:intergenic |
| CTGGGACAAGAGGATCTCAC+AGG | 0.592723 | 4.3:+24641877 | MS.gene31991:CDS |
| TAAGCTGTTCAACCTGTCAA+AGG | 0.594543 | 4.3:+24642866 | MS.gene31991:CDS |
| AGTTCAAAACAGAGAGGTCG+GGG | 0.595017 | 4.3:-24642749 | None:intergenic |
| TTACTGATGTTGAGAAGCCA+AGG | 0.596042 | 4.3:+24642811 | MS.gene31991:CDS |
| GTTGAGAAGCCAAGGATGAG+AGG | 0.601224 | 4.3:+24642819 | MS.gene31991:CDS |
| TGTGGCAGATGGCTTAGCAC+TGG | 0.603451 | 4.3:-24643543 | None:intergenic |
| AAGGTGATAATGATCTTCCA+GGG | 0.607328 | 4.3:+24642787 | MS.gene31991:CDS |
| GTTAGGCTCTTGCTCCATAG+AGG | 0.608724 | 4.3:+24642108 | MS.gene31991:CDS |
| TCTTAGCCAAGCTCTCACTT+CGG | 0.610174 | 4.3:-24643505 | None:intergenic |
| GTGAGAGCTTGGCTAAGAAG+AGG | 0.611225 | 4.3:+24643510 | MS.gene31991:CDS |
| CAAGAGCCTAACACGGCCAG+GGG | 0.618346 | 4.3:-24642097 | None:intergenic |
| CTTCCAGATTGAAGGAGCAG+AGG | 0.620391 | 4.3:+24643477 | MS.gene31991:CDS |
| ATGTCTTCAAGATCACTGGT+GGG | 0.622519 | 4.3:+24642034 | MS.gene31991:CDS |
| AATTGCTAAGGCAAAATCAG+AGG | 0.627856 | 4.3:+24643430 | MS.gene31991:CDS |
| GGTGGTGAAAGTTCTACGGT+AGG | 0.627958 | 4.3:-24642916 | None:intergenic |
| CAAGGATTCCCAATGAAGCA+GGG | 0.635106 | 4.3:+24642066 | MS.gene31991:CDS |
| ACTGGTGGGTGTGACAAACA+AGG | 0.636404 | 4.3:+24642048 | MS.gene31991:CDS |
| GCTGTAAGCTGCTTATGCTG+TGG | 0.655143 | 4.3:-24643561 | None:intergenic |
| CCGTAGAACTTTCACCACCA+AGG | 0.691015 | 4.3:+24642920 | MS.gene31991:CDS |
| TATGGAGCAAGAGCCTAACA+CGG | 0.710814 | 4.3:-24642104 | None:intergenic |
| TAACCAAGTTCAAAACAGAG+AGG | 0.738467 | 4.3:-24642755 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATATATCCTTATATTAA+GGG | + | chr4.3:24642982-24643001 | MS.gene31991:intron | 10.0% |
| !! | CTTTATATATCCTTATATTA+AGG | + | chr4.3:24642981-24643000 | MS.gene31991:intron | 15.0% |
| !! | TATAAGGATATATAAAGAAA+TGG | - | chr4.3:24642978-24642997 | None:intergenic | 15.0% |
| !! | AAATAATGAAATACTAAGTG+GGG | - | chr4.3:24642603-24642622 | None:intergenic | 20.0% |
| !! | ACATGAGATAAATAGTAAAA+TGG | - | chr4.3:24642277-24642296 | None:intergenic | 20.0% |
| !! | CAAATAATGAAATACTAAGT+GGG | - | chr4.3:24642604-24642623 | None:intergenic | 20.0% |
| !! | CAGAAAATTGAAAAGAATTT+CGG | - | chr4.3:24641358-24641377 | None:intergenic | 20.0% |
| !! | TAAATAGATTGAAGATTTGA+AGG | - | chr4.3:24642149-24642168 | None:intergenic | 20.0% |
| !! | TAGCTTATGAAAATAGTTTA+TGG | + | chr4.3:24641610-24641629 | MS.gene31991:intron | 20.0% |
| !!! | TCATTTGAAGTATTTTTCTT+AGG | + | chr4.3:24641264-24641283 | MS.gene31991:intron | 20.0% |
| !!! | TTAAGTTGTTTATCAAAACA+AGG | + | chr4.3:24641743-24641762 | MS.gene31991:intron | 20.0% |
| !!! | TTTTTGTGAAGTTATTTATG+TGG | + | chr4.3:24641806-24641825 | MS.gene31991:intron | 20.0% |
| ! | AAAAAAAAATGCTACCTCTA+TGG | - | chr4.3:24642125-24642144 | None:intergenic | 25.0% |
| ! | AACAATAATCATTGTGATCA+TGG | - | chr4.3:24642546-24642565 | None:intergenic | 25.0% |
| ! | AAGAATATTACTCTCATTGA+AGG | + | chr4.3:24643142-24643161 | MS.gene31991:intron | 25.0% |
| ! | ACATCCAAAACTATTTAACT+AGG | - | chr4.3:24642439-24642458 | None:intergenic | 25.0% |
| ! | AGAACAAAAATGAATACAAG+TGG | - | chr4.3:24643084-24643103 | None:intergenic | 25.0% |
| ! | CGTTCATAAATTTATAGTAG+TGG | + | chr4.3:24642228-24642247 | MS.gene31991:intron | 25.0% |
| ! | CTTAGTATTTCATTATTTGC+AGG | + | chr4.3:24642605-24642624 | MS.gene31991:intron | 25.0% |
| ! | GCAAATAATGAAATACTAAG+TGG | - | chr4.3:24642605-24642624 | None:intergenic | 25.0% |
| ! | GTAATGAATTGTAATCTTAG+TGG | + | chr4.3:24643296-24643315 | MS.gene31991:intron | 25.0% |
| ! | GTTATCTCTAATATTACATG+TGG | - | chr4.3:24642359-24642378 | None:intergenic | 25.0% |
| ! | TCATAAATTTATAGTAGTGG+AGG | + | chr4.3:24642231-24642250 | MS.gene31991:intron | 25.0% |
| ! | TCTTCAATCTATTTACCTTT+CGG | + | chr4.3:24642154-24642173 | MS.gene31991:intron | 25.0% |
| ! | TTACAATGCTCTACAAAATA+AGG | - | chr4.3:24641965-24641984 | None:intergenic | 25.0% |
| ! | TTCATTACAAATGTCTGTAT+TGG | - | chr4.3:24643284-24643303 | None:intergenic | 25.0% |
| !! | ACTATTTTCATAAGCTATCT+TGG | - | chr4.3:24641607-24641626 | None:intergenic | 25.0% |
| !! | AGTTCTTTTCATAAAGTTAG+TGG | - | chr4.3:24642407-24642426 | None:intergenic | 25.0% |
| !! | CATTGTCATTTATCTGAATT+TGG | + | chr4.3:24641470-24641489 | MS.gene31991:intron | 25.0% |
| !!! | ATTTGGTTTGAACTGATATT+TGG | + | chr4.3:24641487-24641506 | MS.gene31991:intron | 25.0% |
| !!! | TAATTTTTTATGCACTTTGC+AGG | + | chr4.3:24642651-24642670 | MS.gene31991:intron | 25.0% |
| !!! | TCAATATGTTTTGATATGCA+TGG | + | chr4.3:24641438-24641457 | MS.gene31991:intron | 25.0% |
| !!! | TTAAATAGTTTTGGATGTGT+GGG | + | chr4.3:24642441-24642460 | MS.gene31991:intron | 25.0% |
| !!! | TTTATTTTATCGTGTGTAGT+AGG | + | chr4.3:24641655-24641674 | MS.gene31991:intron | 25.0% |
| AACTTGGTTATTGTGAAGAA+AGG | + | chr4.3:24642768-24642787 | MS.gene31991:CDS | 30.0% | |
| ACAAAAATGAATACAAGTGG+AGG | - | chr4.3:24643081-24643100 | None:intergenic | 30.0% | |
| ATATGACTGTAGTGTAAATC+TGG | + | chr4.3:24641406-24641425 | MS.gene31991:intron | 30.0% | |
| ATCCTTATATTAAGGGTAGT+GGG | + | chr4.3:24642989-24643008 | MS.gene31991:intron | 30.0% | |
| CCAAAACTATTTAACTAGGA+GGG | - | chr4.3:24642435-24642454 | None:intergenic | 30.0% | |
| CCAACATAGATTTATGAACA+TGG | - | chr4.3:24641314-24641333 | None:intergenic | 30.0% | |
| CCATGTTCATAAATCTATGT+TGG | + | chr4.3:24641311-24641330 | MS.gene31991:intron | 30.0% | |
| GAAAATGAAGAGAGAGTAAA+TGG | - | chr4.3:24641237-24641256 | None:intergenic | 30.0% | |
| GTGAACTTGTAGAAATAAGT+TGG | - | chr4.3:24641585-24641604 | None:intergenic | 30.0% | |
| TATCCTTATATTAAGGGTAG+TGG | + | chr4.3:24642988-24643007 | MS.gene31991:intron | 30.0% | |
| TCCAAAACTATTTAACTAGG+AGG | - | chr4.3:24642436-24642455 | None:intergenic | 30.0% | |
| TTGCCTCTTAGTATTACTAT+CGG | + | chr4.3:24642202-24642221 | MS.gene31991:intron | 30.0% | |
| ! | GCATATGTAGTTATTTCAGT+AGG | + | chr4.3:24642325-24642344 | MS.gene31991:intron | 30.0% |
| ! | GTGATTTTGCATTGGATTAT+TGG | + | chr4.3:24642295-24642314 | MS.gene31991:intron | 30.0% |
| ! | TATCTCATGTGATTTTGCAT+TGG | + | chr4.3:24642287-24642306 | MS.gene31991:intron | 30.0% |
| ! | TGTAGAAATAAGTTGGAAAC+AGG | - | chr4.3:24641578-24641597 | None:intergenic | 30.0% |
| !! | CTGTATTGGTACAATTTTAC+CGG | - | chr4.3:24643270-24643289 | None:intergenic | 30.0% |
| !!! | GTTAAATAGTTTTGGATGTG+TGG | + | chr4.3:24642440-24642459 | MS.gene31991:intron | 30.0% |
| AAAAAATCCATGCCATAGTG+AGG | + | chr4.3:24642485-24642504 | MS.gene31991:intron | 35.0% | |
| AAAAATCCATGCCATAGTGA+GGG | + | chr4.3:24642486-24642505 | MS.gene31991:intron | 35.0% | |
| AAAACGGCACTTCTTTCAAA+CGG | - | chr4.3:24643215-24643234 | None:intergenic | 35.0% | |
| AAACAGTTGTCCAAACTACT+AGG | + | chr4.3:24643045-24643064 | MS.gene31991:intron | 35.0% | |
| AACAGTTGTCCAAACTACTA+GGG | + | chr4.3:24643046-24643065 | MS.gene31991:intron | 35.0% | |
| AATCAGAAACTTACCATCCT+TGG | - | chr4.3:24642940-24642959 | None:intergenic | 35.0% | |
| AATTGCTAAGGCAAAATCAG+AGG | + | chr4.3:24643430-24643449 | MS.gene31991:CDS | 35.0% | |
| ACAGTATGCATTGTCTAGAT+TGG | + | chr4.3:24643177-24643196 | MS.gene31991:intron | 35.0% | |
| AGAAATGGTTACGATATTCG+TGG | - | chr4.3:24642963-24642982 | None:intergenic | 35.0% | |
| AGTATGCATTGTCTAGATTG+GGG | + | chr4.3:24643179-24643198 | MS.gene31991:intron | 35.0% | |
| ATCGCAAATTGTGAGGAAAA+CGG | - | chr4.3:24643231-24643250 | None:intergenic | 35.0% | |
| CAAGAAGAAGAGAATTGCTA+AGG | + | chr4.3:24643418-24643437 | MS.gene31991:CDS | 35.0% | |
| CAGTATGCATTGTCTAGATT+GGG | + | chr4.3:24643178-24643197 | MS.gene31991:intron | 35.0% | |
| TAACCAAGTTCAAAACAGAG+AGG | - | chr4.3:24642758-24642777 | None:intergenic | 35.0% | |
| TAATCATTGTGATCATGGAC+AGG | - | chr4.3:24642541-24642560 | None:intergenic | 35.0% | |
| TCCTTATATTAAGGGTAGTG+GGG | + | chr4.3:24642990-24643009 | MS.gene31991:intron | 35.0% | |
| TCTCCGATAGTAATACTAAG+AGG | - | chr4.3:24642208-24642227 | None:intergenic | 35.0% | |
| TGGGAAACATGCATATAGTA+TGG | + | chr4.3:24642460-24642479 | MS.gene31991:intron | 35.0% | |
| ! | AAAGGTGATAATGATCTTCC+AGG | + | chr4.3:24642786-24642805 | MS.gene31991:CDS | 35.0% |
| ! | AAGGTGATAATGATCTTCCA+GGG | + | chr4.3:24642787-24642806 | MS.gene31991:CDS | 35.0% |
| ! | CCCTCCTAGTTAAATAGTTT+TGG | + | chr4.3:24642432-24642451 | MS.gene31991:intron | 35.0% |
| ! | GAGTAAGCTTCTTTTCTACT+TGG | + | chr4.3:24642627-24642646 | MS.gene31991:intron | 35.0% |
| AAACGGCACTTCTTTCAAAC+GGG | - | chr4.3:24643214-24643233 | None:intergenic | 40.0% | |
| AAGGACAATCGCAAATTGTG+AGG | - | chr4.3:24643238-24643257 | None:intergenic | 40.0% | |
| AAGTTCAAAACAGAGAGGTC+GGG | - | chr4.3:24642753-24642772 | None:intergenic | 40.0% | |
| ACAGTTGTCCAAACTACTAG+GGG | + | chr4.3:24643047-24643066 | MS.gene31991:intron | 40.0% | |
| AGCTCCAAAGATACAACGAT+TGG | + | chr4.3:24643352-24643371 | MS.gene31991:CDS | 40.0% | |
| ATGTCTTCAAGATCACTGGT+GGG | + | chr4.3:24642034-24642053 | MS.gene31991:CDS | 40.0% | |
| CAAGTTCAAAACAGAGAGGT+CGG | - | chr4.3:24642754-24642773 | None:intergenic | 40.0% | |
| CTAAGCAAACCAATCCAAAC+AGG | - | chr4.3:24641515-24641534 | None:intergenic | 40.0% | |
| GGTTATGTCTTCAAGATCAC+TGG | + | chr4.3:24642030-24642049 | MS.gene31991:CDS | 40.0% | |
| GTGACCAATCGTTGTATCTT+TGG | - | chr4.3:24643359-24643378 | None:intergenic | 40.0% | |
| TAAAGTTAGTGGAGACGTTG+AGG | - | chr4.3:24642396-24642415 | None:intergenic | 40.0% | |
| TAAGCTGTTCAACCTGTCAA+AGG | + | chr4.3:24642866-24642885 | MS.gene31991:CDS | 40.0% | |
| TATGTCTTCAAGATCACTGG+TGG | + | chr4.3:24642033-24642052 | MS.gene31991:CDS | 40.0% | |
| TTACTGATGTTGAGAAGCCA+AGG | + | chr4.3:24642811-24642830 | MS.gene31991:CDS | 40.0% | |
| TTGTTTGATTGCAGGGAAGA+AGG | + | chr4.3:24643322-24643341 | MS.gene31991:intron | 40.0% | |
| ! | ACTGATATTTGGAGCCTGTT+TGG | + | chr4.3:24641498-24641517 | MS.gene31991:intron | 40.0% |
| ! | ATTTTACCGGATGTCACTGA+AGG | - | chr4.3:24643257-24643276 | None:intergenic | 40.0% |
| ! | CCTTATATTAAGGGTAGTGG+GGG | + | chr4.3:24642991-24643010 | MS.gene31991:intron | 40.0% |
| ! | GTTGAACAGCTTACGGATTT+TGG | - | chr4.3:24642859-24642878 | None:intergenic | 40.0% |
| ! | TATTTGGAGCCTGTTTGGAT+TGG | + | chr4.3:24641503-24641522 | MS.gene31991:intron | 40.0% |
| ! | TTGACAGGTTGAACAGCTTA+CGG | - | chr4.3:24642866-24642885 | None:intergenic | 40.0% |
| !! | AGTGGTTGTTGTTTGATTGC+AGG | + | chr4.3:24643314-24643333 | MS.gene31991:intron | 40.0% |
| !! | GAAGTTCTTGGTGATGCTTT+GGG | + | chr4.3:24641899-24641918 | MS.gene31991:CDS | 40.0% |
| !! | GTGGTTGTTGTTTGATTGCA+GGG | + | chr4.3:24643315-24643334 | MS.gene31991:intron | 40.0% |
| AAGCTTCTTCTGACATCCAG+TGG | - | chr4.3:24641183-24641202 | None:intergenic | 45.0% | |
| ACAAGGATTCCCAATGAAGC+AGG | + | chr4.3:24642065-24642084 | MS.gene31991:CDS | 45.0% | |
| ACTCCTTGCTTCCAGATTGA+AGG | + | chr4.3:24643469-24643488 | MS.gene31991:CDS | 45.0% | |
| AGAACTTTCACCACCAAGGA+TGG | + | chr4.3:24642924-24642943 | MS.gene31991:CDS | 45.0% | |
| AGGATCTCACAGGAAGTTCT+TGG | + | chr4.3:24641887-24641906 | MS.gene31991:CDS | 45.0% | |
| AGTTCAAAACAGAGAGGTCG+GGG | - | chr4.3:24642752-24642771 | None:intergenic | 45.0% | |
| ATATTGCAGCCGTGCTTTCT+GGG | + | chr4.3:24641859-24641878 | MS.gene31991:intron | 45.0% | |
| CAAGGATTCCCAATGAAGCA+GGG | + | chr4.3:24642066-24642085 | MS.gene31991:CDS | 45.0% | |
| CAATTCTTGCTCGCTTCCTT+TGG | - | chr4.3:24643394-24643413 | None:intergenic | 45.0% | |
| CAGAAACTTACCATCCTTGG+TGG | - | chr4.3:24642937-24642956 | None:intergenic | 45.0% | |
| CCCCCACTACCCTTAATATA+AGG | - | chr4.3:24642994-24643013 | None:intergenic | 45.0% | |
| CTATGAAGCCCCTAGTAGTT+TGG | - | chr4.3:24643058-24643077 | None:intergenic | 45.0% | |
| GATTGTCCTTCAGTGACATC+CGG | + | chr4.3:24643248-24643267 | MS.gene31991:intron | 45.0% | |
| GCAACATACAGTATGCCGAA+AGG | - | chr4.3:24642172-24642191 | None:intergenic | 45.0% | |
| GCACATCATCATCCTTTGAC+AGG | - | chr4.3:24642881-24642900 | None:intergenic | 45.0% | |
| TATATTGCAGCCGTGCTTTC+TGG | + | chr4.3:24641858-24641877 | MS.gene31991:intron | 45.0% | |
| TATGGAGCAAGAGCCTAACA+CGG | - | chr4.3:24642107-24642126 | None:intergenic | 45.0% | |
| TCAACACTCCCTGCTTCATT+GGG | - | chr4.3:24642077-24642096 | None:intergenic | 45.0% | |
| TCTTAGCCAAGCTCTCACTT+CGG | - | chr4.3:24643508-24643527 | None:intergenic | 45.0% | |
| TGCTCTCTGCAGGAGTTTAA+GGG | + | chr4.3:24642009-24642028 | MS.gene31991:intron | 45.0% | |
| TTCCAGATTGAAGGAGCAGA+GGG | + | chr4.3:24643478-24643497 | MS.gene31991:CDS | 45.0% | |
| TTCTCAACATCAGTAAGCCC+TGG | - | chr4.3:24642807-24642826 | None:intergenic | 45.0% | |
| TTCTTCTGACATCCAGTGGT+TGG | - | chr4.3:24641179-24641198 | None:intergenic | 45.0% | |
| TTGCTCTCTGCAGGAGTTTA+AGG | + | chr4.3:24642008-24642027 | MS.gene31991:intron | 45.0% | |
| ! | CGGATTTTGGATGCTCTCTT+AGG | - | chr4.3:24642846-24642865 | None:intergenic | 45.0% |
| ! | GTTGTGATTTTGCTCTCTGC+AGG | + | chr4.3:24641999-24642018 | MS.gene31991:intron | 45.0% |
| ! | TGGAGACGTTGAGGTATTTG+TGG | - | chr4.3:24642387-24642406 | None:intergenic | 45.0% |
| !! | CCTTGGTGGTGAAAGTTCTA+CGG | - | chr4.3:24642923-24642942 | None:intergenic | 45.0% |
| !! | CGACCTCTCTGTTTTGAACT+TGG | + | chr4.3:24642752-24642771 | MS.gene31991:CDS | 45.0% |
| !! | GGAAGTTCTTGGTGATGCTT+TGG | + | chr4.3:24641898-24641917 | MS.gene31991:CDS | 45.0% |
| AACGTTGCCAATCCAACCAC+TGG | + | chr4.3:24641164-24641183 | MS.gene31991:CDS | 50.0% | |
| CCGTAGAACTTTCACCACCA+AGG | + | chr4.3:24642920-24642939 | MS.gene31991:CDS | 50.0% | |
| CGTAGAAGGAAGTCTGTTCG+TGG | + | chr4.3:24642714-24642733 | MS.gene31991:CDS | 50.0% | |
| CTCTTAGGACCTCTCATCCT+TGG | - | chr4.3:24642831-24642850 | None:intergenic | 50.0% | |
| CTGACATCCAGTGGTTGGAT+TGG | - | chr4.3:24641174-24641193 | None:intergenic | 50.0% | |
| CTTCCAGATTGAAGGAGCAG+AGG | + | chr4.3:24643477-24643496 | MS.gene31991:CDS | 50.0% | |
| GCTCCTTCAATCTGGAAGCA+AGG | - | chr4.3:24643475-24643494 | None:intergenic | 50.0% | |
| GGTGGTGAAAGTTCTACGGT+AGG | - | chr4.3:24642919-24642938 | None:intergenic | 50.0% | |
| GTCAACACTCCCTGCTTCAT+TGG | - | chr4.3:24642078-24642097 | None:intergenic | 50.0% | |
| GTGAGAGCTTGGCTAAGAAG+AGG | + | chr4.3:24643510-24643529 | MS.gene31991:CDS | 50.0% | |
| GTTAGGCTCTTGCTCCATAG+AGG | + | chr4.3:24642108-24642127 | MS.gene31991:CDS | 50.0% | |
| GTTGAGAAGCCAAGGATGAG+AGG | + | chr4.3:24642819-24642838 | MS.gene31991:CDS | 50.0% | |
| TCACTCCTTTGACCCTCCAA+AGG | + | chr4.3:24643375-24643394 | MS.gene31991:CDS | 50.0% | |
| TCCTCTTGTCCCAGAAAGCA+CGG | - | chr4.3:24641871-24641890 | None:intergenic | 50.0% | |
| TCTTGCTCGCTTCCTTTGGA+GGG | - | chr4.3:24643390-24643409 | None:intergenic | 50.0% | |
| TTCCCTCTGCTCCTTCAATC+TGG | - | chr4.3:24643483-24643502 | None:intergenic | 50.0% | |
| TTCTTGCTCGCTTCCTTTGG+AGG | - | chr4.3:24643391-24643410 | None:intergenic | 50.0% | |
| ! | ACTCCTTGTTTCCGTGGACA+CGG | + | chr4.3:24642675-24642694 | MS.gene31991:CDS | 50.0% |
| ! | ACTGGTGGGTGTGACAAACA+AGG | + | chr4.3:24642048-24642067 | MS.gene31991:CDS | 50.0% |
| ! | TGGCTTAGCACTGGATAGTC+TGG | - | chr4.3:24643537-24643556 | None:intergenic | 50.0% |
| ATGGACAGGCCCTACCTTAG+GGG | - | chr4.3:24642527-24642546 | None:intergenic | 55.0% | |
| CATGGACAGGCCCTACCTTA+GGG | - | chr4.3:24642528-24642547 | None:intergenic | 55.0% | |
| CCCACACATCCCCTAAGGTA+GGG | + | chr4.3:24642515-24642534 | MS.gene31991:intron | 55.0% | |
| CCCTACCTTAGGGGATGTGT+GGG | - | chr4.3:24642518-24642537 | None:intergenic | 55.0% | |
| CTGGGACAAGAGGATCTCAC+AGG | + | chr4.3:24641877-24641896 | MS.gene31991:CDS | 55.0% | |
| CTTCCGTGTCCACGGAAACA+AGG | - | chr4.3:24642681-24642700 | None:intergenic | 55.0% | |
| CTTGTTTCCGTGGACACGGA+AGG | + | chr4.3:24642679-24642698 | MS.gene31991:CDS | 55.0% | |
| TCATGGACAGGCCCTACCTT+AGG | - | chr4.3:24642529-24642548 | None:intergenic | 55.0% | |
| TGTGGCAGATGGCTTAGCAC+TGG | - | chr4.3:24643546-24643565 | None:intergenic | 55.0% | |
| ! | CGCTTCCTTTGGAGGGTCAA+AGG | - | chr4.3:24643383-24643402 | None:intergenic | 55.0% |
| ! | GCAGGAACTCCTTGTTTCCG+TGG | + | chr4.3:24642669-24642688 | MS.gene31991:intron | 55.0% |
| AGCAAGAGCCTAACACGGCC+AGG | - | chr4.3:24642102-24642121 | None:intergenic | 60.0% | |
| CAAGAGCCTAACACGGCCAG+GGG | - | chr4.3:24642100-24642119 | None:intergenic | 60.0% | |
| CAAGGCCCACACATCCCCTA+AGG | + | chr4.3:24642510-24642529 | MS.gene31991:intron | 60.0% | |
| CATTGCGCCTTCCGTGTCCA+CGG | - | chr4.3:24642689-24642708 | None:intergenic | 60.0% | |
| CCATGCCATAGTGAGGGCCA+AGG | + | chr4.3:24642492-24642511 | MS.gene31991:intron | 60.0% | |
| CCTTGGCCCTCACTATGGCA+TGG | - | chr4.3:24642495-24642514 | None:intergenic | 60.0% | |
| CTTAGGGGATGTGTGGGCCT+TGG | - | chr4.3:24642512-24642531 | None:intergenic | 60.0% | |
| GCAAGAGCCTAACACGGCCA+GGG | - | chr4.3:24642101-24642120 | None:intergenic | 60.0% | |
| GCCCACACATCCCCTAAGGT+AGG | + | chr4.3:24642514-24642533 | MS.gene31991:intron | 60.0% | |
| GCCCTACCTTAGGGGATGTG+TGG | - | chr4.3:24642519-24642538 | None:intergenic | 60.0% | |
| GGAACGCCGAAGTGAGAGCT+TGG | + | chr4.3:24643499-24643518 | MS.gene31991:CDS | 60.0% | |
| TGTTGACCCCTGGCCGTGTT+AGG | + | chr4.3:24642091-24642110 | MS.gene31991:CDS | 60.0% | |
| ! | GGCGCAATGGAGAGCGTAGA+AGG | + | chr4.3:24642700-24642719 | MS.gene31991:CDS | 60.0% |
| !! | AAGCAGGGAGTGTTGACCCC+TGG | + | chr4.3:24642081-24642100 | MS.gene31991:CDS | 60.0% |
| !! | GCCGTGCTTTCTGGGACAAG+AGG | + | chr4.3:24641867-24641886 | MS.gene31991:intron | 60.0% |
| GTGGGCCTTGGCCCTCACTA+TGG | - | chr4.3:24642500-24642519 | None:intergenic | 65.0% | |
| ! | CGTGGACACGGAAGGCGCAA+TGG | + | chr4.3:24642687-24642706 | MS.gene31991:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 24641065 | 24643571 | 24641065 | ID=MS.gene31991 |
| chr4.3 | mRNA | 24641065 | 24643571 | 24641065 | ID=MS.gene31991.t1;Parent=MS.gene31991 |
| chr4.3 | exon | 24641065 | 24641070 | 24641065 | ID=MS.gene31991.t1.exon1;Parent=MS.gene31991.t1 |
| chr4.3 | CDS | 24641065 | 24641070 | 24641065 | ID=cds.MS.gene31991.t1;Parent=MS.gene31991.t1 |
| chr4.3 | exon | 24641161 | 24641225 | 24641161 | ID=MS.gene31991.t1.exon2;Parent=MS.gene31991.t1 |
| chr4.3 | CDS | 24641161 | 24641225 | 24641161 | ID=cds.MS.gene31991.t1;Parent=MS.gene31991.t1 |
| chr4.3 | exon | 24641868 | 24641925 | 24641868 | ID=MS.gene31991.t1.exon3;Parent=MS.gene31991.t1 |
| chr4.3 | CDS | 24641868 | 24641925 | 24641868 | ID=cds.MS.gene31991.t1;Parent=MS.gene31991.t1 |
| chr4.3 | exon | 24642021 | 24642129 | 24642021 | ID=MS.gene31991.t1.exon4;Parent=MS.gene31991.t1 |
| chr4.3 | CDS | 24642021 | 24642129 | 24642021 | ID=cds.MS.gene31991.t1;Parent=MS.gene31991.t1 |
| chr4.3 | exon | 24642673 | 24642945 | 24642673 | ID=MS.gene31991.t1.exon5;Parent=MS.gene31991.t1 |
| chr4.3 | CDS | 24642673 | 24642945 | 24642673 | ID=cds.MS.gene31991.t1;Parent=MS.gene31991.t1 |
| chr4.3 | exon | 24643336 | 24643571 | 24643336 | ID=MS.gene31991.t1.exon6;Parent=MS.gene31991.t1 |
| chr4.3 | CDS | 24643336 | 24643571 | 24643336 | ID=cds.MS.gene31991.t1;Parent=MS.gene31991.t1 |
| Gene Sequence |
| Protein sequence |
