Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023381.t1 | KEH20553.1 | 96 | 353 | 11 | 1 | 3 | 355 | 4 | 353 | 3.50E-193 | 684.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023381.t1 | Q8VYP6 | 55.9 | 347 | 145 | 4 | 12 | 355 | 10 | 351 | 2.1e-106 | 387.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023381.t1 | A0A072TUM8 | 96.0 | 353 | 11 | 1 | 3 | 355 | 4 | 353 | 2.5e-193 | 684.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023381.t1 | MTR_8g080150 | 95.787 | 356 | 11 | 2 | 1 | 355 | 1 | 353 | 0.0 | 692 |
| MS.gene023381.t1 | MTR_8g080140 | 68.661 | 351 | 102 | 4 | 9 | 355 | 7 | 353 | 3.21e-170 | 479 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023381.t1 | AT5G11010 | 55.908 | 347 | 145 | 4 | 12 | 355 | 10 | 351 | 2.67e-136 | 392 |
| MS.gene023381.t1 | AT5G11010 | 55.908 | 347 | 145 | 4 | 12 | 355 | 10 | 351 | 2.67e-136 | 392 |
| MS.gene023381.t1 | AT5G11010 | 55.908 | 347 | 145 | 4 | 12 | 355 | 10 | 351 | 2.67e-136 | 392 |
| MS.gene023381.t1 | AT5G11010 | 54.426 | 305 | 131 | 4 | 12 | 313 | 10 | 309 | 1.84e-115 | 338 |
Find 79 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAATAAACTTGTAGGAATT+TGG | 0.140890 | 4.4:-16421533 | None:intergenic |
| AATACCTCTGGCTGGGTTAA+AGG | 0.251617 | 4.4:+16419794 | MS.gene023381:CDS |
| CTTACCTGCAATAAACTTGT+AGG | 0.273363 | 4.4:-16421540 | None:intergenic |
| CATTTCAGGTGATGGTTATA+AGG | 0.285128 | 4.4:+16419921 | MS.gene023381:intron |
| AAAAGTCAATCTCTTGCTTC+AGG | 0.287578 | 4.4:+16421503 | MS.gene023381:CDS |
| AATTTACCTGTTGGAAAGTT+CGG | 0.321432 | 4.4:+16420015 | MS.gene023381:CDS |
| AGCCTGAATGCTAGTATTGT+TGG | 0.330336 | 4.4:+16420517 | MS.gene023381:CDS |
| CTTGCGATGGGAACATTATA+AGG | 0.336390 | 4.4:-16420354 | None:intergenic |
| CTGATTACACCTGTGCCATT+TGG | 0.342406 | 4.4:+16421471 | MS.gene023381:CDS |
| CTCGGTCGCATCTAGTTAAT+AGG | 0.357472 | 4.4:-16418429 | None:intergenic |
| CTGGAGAGTATTTCAGAGAT+TGG | 0.360131 | 4.4:-16420496 | None:intergenic |
| CCTCCCATCACATTTGTTTG+TGG | 0.372621 | 4.4:+16418358 | MS.gene023381:CDS |
| AATTCCTACAAGTTTATTGC+AGG | 0.374142 | 4.4:+16421536 | MS.gene023381:CDS |
| CAACCTGAGTTTACTCCTCC+TGG | 0.374377 | 4.4:+16418478 | MS.gene023381:CDS |
| ATTTACCTGTTGGAAAGTTC+GGG | 0.375937 | 4.4:+16420016 | MS.gene023381:CDS |
| CCCCAGGGTGCCTGCTCAAA+AGG | 0.383947 | 4.4:+16420218 | MS.gene023381:intron |
| AGGGGCATTGACACAGTTAA+AGG | 0.386318 | 4.4:+16421438 | MS.gene023381:CDS |
| GAAAGAGCAATGGGTTCATC+TGG | 0.388190 | 4.4:+16418262 | None:intergenic |
| TTACCCTGGTGCCTTGGTCT+TGG | 0.389061 | 4.4:+16420571 | MS.gene023381:CDS |
| AGCCAACAATACTAGCATTC+AGG | 0.390103 | 4.4:-16420519 | None:intergenic |
| GTTGGAAAGTTCGGGTCAAA+TGG | 0.391820 | 4.4:+16420024 | MS.gene023381:CDS |
| TTGTAGTGAATACCTCTGGC+TGG | 0.403286 | 4.4:+16419786 | MS.gene023381:CDS |
| GTGAACATGCTAAAATATAT+TGG | 0.405008 | 4.4:+16419949 | MS.gene023381:CDS |
| TATTTATGATTATTATCATA+AGG | 0.411756 | 4.4:+16419712 | MS.gene023381:CDS |
| TTTCATAGTTTATACCTCTC+TGG | 0.415607 | 4.4:-16418993 | None:intergenic |
| TTCAGATATTTCAACAATCA+AGG | 0.444136 | 4.4:+16420302 | MS.gene023381:CDS |
| TGGAGAGTATTTCAGAGATT+GGG | 0.453316 | 4.4:-16420495 | None:intergenic |
| CCCACTCATATAGTTAAGAT+AGG | 0.455843 | 4.4:+16419973 | MS.gene023381:CDS |
| TGAGATATATCCAGCTCGTC+AGG | 0.461392 | 4.4:+16420074 | MS.gene023381:CDS |
| TTTAATGAGTCCTGACGAGC+TGG | 0.479415 | 4.4:-16420084 | None:intergenic |
| CAGCTTGTGACCATTGTTGT+GGG | 0.481609 | 4.4:-16418309 | None:intergenic |
| AGGAGTTGGACTGGATGTAA+TGG | 0.489408 | 4.4:-16418338 | None:intergenic |
| AAAGTCAATCTCTTGCTTCA+GGG | 0.496620 | 4.4:+16421504 | MS.gene023381:CDS |
| ACAAATGTGATGGGAGGAGT+TGG | 0.500253 | 4.4:-16418352 | None:intergenic |
| TTTGACCCGAACTTTCCAAC+AGG | 0.502390 | 4.4:-16420021 | None:intergenic |
| GCAGCTTGTGACCATTGTTG+TGG | 0.508024 | 4.4:-16418310 | None:intergenic |
| TGTTGTGGGATGTAAATGTC+TGG | 0.513328 | 4.4:-16418295 | None:intergenic |
| CCTCTTGTAGTGAATACCTC+TGG | 0.514438 | 4.4:+16419782 | MS.gene023381:CDS |
| TTCAGAGAACCAAATGGCAC+AGG | 0.515584 | 4.4:-16421480 | None:intergenic |
| TTGTGATTCAGGTATTGTGA+GGG | 0.527148 | 4.4:+16421419 | MS.gene023381:intron |
| CCTACCAAGACCAAGGCACC+AGG | 0.529524 | 4.4:-16420575 | None:intergenic |
| TCGAATCTTTATGCTTGCGA+TGG | 0.529810 | 4.4:-16420367 | None:intergenic |
| GCTTATCTTGAAACTGATGT+TGG | 0.537454 | 4.4:+16418454 | MS.gene023381:CDS |
| TGTAGTGAATACCTCTGGCT+GGG | 0.538425 | 4.4:+16419787 | MS.gene023381:CDS |
| TGCTCCACAAACAAATGTGA+TGG | 0.541521 | 4.4:-16418362 | None:intergenic |
| TTGGAAAGTTCGGGTCAAAT+GGG | 0.542587 | 4.4:+16420025 | MS.gene023381:CDS |
| ATTGTTAATAAAGTTACTCC+AGG | 0.544370 | 4.4:+16418517 | MS.gene023381:CDS |
| AACAATACTAGCATTCAGGC+TGG | 0.547070 | 4.4:-16420515 | None:intergenic |
| CTTGTGATTCAGGTATTGTG+AGG | 0.553596 | 4.4:+16421418 | MS.gene023381:intron |
| GATCTGAAGAATTTACCTGT+TGG | 0.554922 | 4.4:+16420006 | MS.gene023381:CDS |
| CGAATCTTTATGCTTGCGAT+GGG | 0.557731 | 4.4:-16420366 | None:intergenic |
| GGCTTAGCAGTTGAATCTGA+AGG | 0.565104 | 4.4:+16420538 | MS.gene023381:CDS |
| ATAAGGACAGTGAGAGGTCA+AGG | 0.568437 | 4.4:-16420337 | None:intergenic |
| ATTGAGGAGATTTCGCGAGA+AGG | 0.573264 | 4.4:-16418404 | None:intergenic |
| TGTGATTCAGGTATTGTGAG+GGG | 0.578885 | 4.4:+16421420 | MS.gene023381:intron |
| TGGAGTAACTTTATTAACAA+TGG | 0.579021 | 4.4:-16418515 | None:intergenic |
| AGGTAAATTCTTCAGATCAG+TGG | 0.580946 | 4.4:-16420001 | None:intergenic |
| GCCTATCTTAACTATATGAG+TGG | 0.583863 | 4.4:-16419974 | None:intergenic |
| TGTGATGGGAGGAGTTGGAC+TGG | 0.596371 | 4.4:-16418347 | None:intergenic |
| CCAGAGGTATTCACTACAAG+AGG | 0.598694 | 4.4:-16419782 | None:intergenic |
| CAGGAGGAGTAAACTCAGGT+TGG | 0.603274 | 4.4:-16418477 | None:intergenic |
| ATGGTAAGAGAGATAAAACC+AGG | 0.613877 | 4.4:-16418496 | None:intergenic |
| GCTCCACAAACAAATGTGAT+GGG | 0.614241 | 4.4:-16418361 | None:intergenic |
| ATCTAGTTAATAGGACATTG+AGG | 0.620697 | 4.4:-16418420 | None:intergenic |
| CAGTTTCAAGATAAGCAACT+CGG | 0.625840 | 4.4:-16418447 | None:intergenic |
| CCTATCTTAACTATATGAGT+GGG | 0.628881 | 4.4:-16419973 | None:intergenic |
| GTTGAAATATCTGAATCACT+AGG | 0.636570 | 4.4:-16420294 | None:intergenic |
| TTTACCTTTAACCCAGCCAG+AGG | 0.641811 | 4.4:-16419798 | None:intergenic |
| AAACCAGGAGGAGTAAACTC+AGG | 0.646510 | 4.4:-16418481 | None:intergenic |
| AACATTATAAGGACAGTGAG+AGG | 0.648592 | 4.4:-16420343 | None:intergenic |
| GATTCGACGTGTTCTTCACG+AGG | 0.658346 | 4.4:+16420383 | MS.gene023381:CDS |
| GTGGGATGTAAATGTCTGGA+AGG | 0.660248 | 4.4:-16418291 | None:intergenic |
| ACATTTACATCCCACAACAA+TGG | 0.661470 | 4.4:+16418299 | MS.gene023381:CDS |
| CCACAAACAAATGTGATGGG+AGG | 0.666150 | 4.4:-16418358 | None:intergenic |
| GTTTGTGGAGCAAGTAACTG+CGG | 0.670641 | 4.4:+16418373 | MS.gene023381:CDS |
| CAAGTTACCTACCAAGACCA+AGG | 0.684244 | 4.4:-16420582 | None:intergenic |
| CTACCAAGACCAAGGCACCA+GGG | 0.712305 | 4.4:-16420574 | None:intergenic |
| GTAAGAGAGATAAAACCAGG+AGG | 0.735353 | 4.4:-16418493 | None:intergenic |
| CATGCCTGAAAACACCAGAG+AGG | 0.772404 | 4.4:+16418979 | MS.gene023381:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTGATATATTGTTAT+TGG | - | chr4.4:16419872-16419891 | None:intergenic | 10.0% |
| !! | TATTTATGATTATTATCATA+AGG | + | chr4.4:16419712-16419731 | MS.gene023381:CDS | 10.0% |
| !! | ATTATTGAATCAATGAATAT+AGG | - | chr4.4:16418883-16418902 | None:intergenic | 15.0% |
| !! | TGAATAAAGTTACAAAATAA+AGG | + | chr4.4:16420823-16420842 | MS.gene023381:intron | 15.0% |
| !! | TTATTGAATCAATGAATATA+GGG | - | chr4.4:16418882-16418901 | None:intergenic | 15.0% |
| !! | TTCTATAAAAATGTTCATTA+TGG | + | chr4.4:16418904-16418923 | MS.gene023381:intron | 15.0% |
| !! | ATATCTCATCTCAATAATTT+GGG | + | chr4.4:16419390-16419409 | MS.gene023381:intron | 20.0% |
| !! | TGTAAACAAAAAACAACATT+TGG | + | chr4.4:16421050-16421069 | MS.gene023381:intron | 20.0% |
| !! | TTAACAAGATACAATAGTTA+AGG | - | chr4.4:16419140-16419159 | None:intergenic | 20.0% |
| !! | TTACATGTAAATGTTAGAAT+AGG | - | chr4.4:16418561-16418580 | None:intergenic | 20.0% |
| !!! | AAATGTTGTTTTTTGTTTAC+AGG | - | chr4.4:16421051-16421070 | None:intergenic | 20.0% |
| !!! | ATATTTGATTCTTTTAGTGT+CGG | + | chr4.4:16419541-16419560 | MS.gene023381:intron | 20.0% |
| !!! | ATGTATTTTAAGTATGTTGA+CGG | - | chr4.4:16419686-16419705 | None:intergenic | 20.0% |
| !!! | ATTATATCTCATATTTCTGT+TGG | + | chr4.4:16421175-16421194 | MS.gene023381:intron | 20.0% |
| !!! | TGACTTATGAATATTTTTGT+AGG | + | chr4.4:16420471-16420490 | MS.gene023381:intron | 20.0% |
| !!! | TTCTTTATCTTTTCTATTTG+TGG | - | chr4.4:16421269-16421288 | None:intergenic | 20.0% |
| ! | AAGAAACATCACCAAAAAAA+AGG | - | chr4.4:16419652-16419671 | None:intergenic | 25.0% |
| ! | AGAAACATCACCAAAAAAAA+GGG | - | chr4.4:16419651-16419670 | None:intergenic | 25.0% |
| ! | AGAATAAATTCATATTCCTC+TGG | + | chr4.4:16421285-16421304 | MS.gene023381:intron | 25.0% |
| ! | ATTCATAGAGTTGAATCATT+TGG | - | chr4.4:16420808-16420827 | None:intergenic | 25.0% |
| ! | ATTGTTAATAAAGTTACTCC+AGG | + | chr4.4:16418517-16418536 | MS.gene023381:CDS | 25.0% |
| ! | CTTGATATCATTCAAACTTA+TGG | + | chr4.4:16421105-16421124 | MS.gene023381:intron | 25.0% |
| ! | GATATCTCATCTCAATAATT+TGG | + | chr4.4:16419389-16419408 | MS.gene023381:intron | 25.0% |
| ! | GGATGTTTGATACATTAAAA+AGG | - | chr4.4:16421248-16421267 | None:intergenic | 25.0% |
| ! | GTGAACATGCTAAAATATAT+TGG | + | chr4.4:16419949-16419968 | MS.gene023381:CDS | 25.0% |
| ! | TAAAAGGAATTTGCATTTGT+AGG | + | chr4.4:16421144-16421163 | MS.gene023381:intron | 25.0% |
| ! | TGGAGTAACTTTATTAACAA+TGG | - | chr4.4:16418518-16418537 | None:intergenic | 25.0% |
| ! | TTAATGACATTGATACAAAC+TGG | - | chr4.4:16419349-16419368 | None:intergenic | 25.0% |
| ! | TTCAGATATTTCAACAATCA+AGG | + | chr4.4:16420302-16420321 | MS.gene023381:CDS | 25.0% |
| ! | TTCTTAATAGCATAGATTTG+AGG | + | chr4.4:16419222-16419241 | MS.gene023381:intron | 25.0% |
| !! | AATTCTTTTATCTTTGTGAG+TGG | - | chr4.4:16419254-16419273 | None:intergenic | 25.0% |
| !! | ACGAGATTTGATAATTATGT+TGG | + | chr4.4:16418838-16418857 | MS.gene023381:intron | 25.0% |
| !! | AGAATTTTGTCTCTTATCAA+AGG | - | chr4.4:16419747-16419766 | None:intergenic | 25.0% |
| !! | CGAGATTTGATAATTATGTT+GGG | + | chr4.4:16418839-16418858 | MS.gene023381:intron | 25.0% |
| !!! | AAACTTGTCACTTTTTTCAT+GGG | + | chr4.4:16418807-16418826 | MS.gene023381:intron | 25.0% |
| !!! | TATTTGTTGCTTTGAATTTG+AGG | + | chr4.4:16419438-16419457 | MS.gene023381:intron | 25.0% |
| AATACCTATTAATCAGCTTG+AGG | - | chr4.4:16420907-16420926 | None:intergenic | 30.0% | |
| AATTTACCTGTTGGAAAGTT+CGG | + | chr4.4:16420015-16420034 | MS.gene023381:CDS | 30.0% | |
| ACTAAACTATCAGCTGAAAA+TGG | - | chr4.4:16420139-16420158 | None:intergenic | 30.0% | |
| AGATACAATAGTTAAGGTTG+AGG | - | chr4.4:16419134-16419153 | None:intergenic | 30.0% | |
| AGGATATTAGTTACATACAC+AGG | + | chr4.4:16420843-16420862 | MS.gene023381:intron | 30.0% | |
| ATACCTATTAATCAGCTTGA+GGG | - | chr4.4:16420906-16420925 | None:intergenic | 30.0% | |
| ATCTAGTTAATAGGACATTG+AGG | - | chr4.4:16418423-16418442 | None:intergenic | 30.0% | |
| ATGTCATTAACATGTGATAC+TGG | + | chr4.4:16419359-16419378 | MS.gene023381:intron | 30.0% | |
| CACGTAGTAAAACTAAATGT+GGG | - | chr4.4:16418683-16418702 | None:intergenic | 30.0% | |
| CAGAATATTGTATACAAGCT+GGG | - | chr4.4:16420937-16420956 | None:intergenic | 30.0% | |
| CATTCAAATAAGACATGGAT+TGG | - | chr4.4:16419567-16419586 | None:intergenic | 30.0% | |
| CCTATCTTAACTATATGAGT+GGG | - | chr4.4:16419976-16419995 | None:intergenic | 30.0% | |
| CTTAGCATCATTACTGTTAA+AGG | + | chr4.4:16421384-16421403 | MS.gene023381:intron | 30.0% | |
| GAGAAAAGCAGTAGTTTATT+TGG | - | chr4.4:16419847-16419866 | None:intergenic | 30.0% | |
| GCAATAAACTTGTAGGAATT+TGG | - | chr4.4:16421536-16421555 | None:intergenic | 30.0% | |
| GCATAACAATGTGACAAAAT+AGG | - | chr4.4:16419465-16419484 | None:intergenic | 30.0% | |
| GCATTCATTCAAATAAGACA+TGG | - | chr4.4:16419572-16419591 | None:intergenic | 30.0% | |
| GTTGAAATATCTGAATCACT+AGG | - | chr4.4:16420297-16420316 | None:intergenic | 30.0% | |
| TATATGTTAGAAAACCTACC+TGG | - | chr4.4:16418538-16418557 | None:intergenic | 30.0% | |
| TTAATAAAGTTACTCCAGGT+AGG | + | chr4.4:16418521-16418540 | MS.gene023381:intron | 30.0% | |
| TTTCATAGTTTATACCTCTC+TGG | - | chr4.4:16418996-16419015 | None:intergenic | 30.0% | |
| ! | TTTGTCTGTTTGTAGTTTGT+AGG | + | chr4.4:16419516-16419535 | MS.gene023381:intron | 30.0% |
| !! | GTATACAATATTCTGGAACA+TGG | + | chr4.4:16420942-16420961 | MS.gene023381:intron | 30.0% |
| !! | GTTTAAAATTTTCAAGCACG+TGG | - | chr4.4:16418781-16418800 | None:intergenic | 30.0% |
| !! | TTCTGATCGAAAGTATCTTA+AGG | - | chr4.4:16419293-16419312 | None:intergenic | 30.0% |
| !!! | ACTTTTTTCAGAGAACCAAA+TGG | - | chr4.4:16421489-16421508 | None:intergenic | 30.0% |
| !!! | CAAACTTGTCACTTTTTTCA+TGG | + | chr4.4:16418806-16418825 | MS.gene023381:intron | 30.0% |
| !!! | GTTTTGATTTCTTGTGATTC+AGG | + | chr4.4:16421408-16421427 | MS.gene023381:intron | 30.0% |
| AAAAGTCAATCTCTTGCTTC+AGG | + | chr4.4:16421503-16421522 | MS.gene023381:CDS | 35.0% | |
| AAAGTCAATCTCTTGCTTCA+GGG | + | chr4.4:16421504-16421523 | MS.gene023381:CDS | 35.0% | |
| AACATTATAAGGACAGTGAG+AGG | - | chr4.4:16420346-16420365 | None:intergenic | 35.0% | |
| ACATTTACATCCCACAACAA+TGG | + | chr4.4:16418299-16418318 | MS.gene023381:CDS | 35.0% | |
| AGGTAAATTCTTCAGATCAG+TGG | - | chr4.4:16420004-16420023 | None:intergenic | 35.0% | |
| ATGACAGCCAGAAAATTAGA+TGG | - | chr4.4:16421350-16421369 | None:intergenic | 35.0% | |
| ATGGTAAGAGAGATAAAACC+AGG | - | chr4.4:16418499-16418518 | None:intergenic | 35.0% | |
| ATTCCAAAATGTCTCGTCAT+AGG | + | chr4.4:16420617-16420636 | MS.gene023381:intron | 35.0% | |
| ATTTACCTGTTGGAAAGTTC+GGG | + | chr4.4:16420016-16420035 | MS.gene023381:CDS | 35.0% | |
| CAGTTTCAAGATAAGCAACT+CGG | - | chr4.4:16418450-16418469 | None:intergenic | 35.0% | |
| CATAGAGTTGAATCATTTGG+AGG | - | chr4.4:16420805-16420824 | None:intergenic | 35.0% | |
| CATAGTTTATACATCTCTCG+TGG | - | chr4.4:16419098-16419117 | None:intergenic | 35.0% | |
| CATGTACATAGAACACTCAT+TGG | - | chr4.4:16420698-16420717 | None:intergenic | 35.0% | |
| CCAGAATATTGTATACAAGC+TGG | - | chr4.4:16420938-16420957 | None:intergenic | 35.0% | |
| CCAGCTTGTATACAATATTC+TGG | + | chr4.4:16420935-16420954 | MS.gene023381:intron | 35.0% | |
| CCCACTCATATAGTTAAGAT+AGG | + | chr4.4:16419973-16419992 | MS.gene023381:CDS | 35.0% | |
| GATCTGAAGAATTTACCTGT+TGG | + | chr4.4:16420006-16420025 | MS.gene023381:CDS | 35.0% | |
| GCACGTAGTAAAACTAAATG+TGG | - | chr4.4:16418684-16418703 | None:intergenic | 35.0% | |
| GCCTATCTTAACTATATGAG+TGG | - | chr4.4:16419977-16419996 | None:intergenic | 35.0% | |
| GCTTATCTTGAAACTGATGT+TGG | + | chr4.4:16418454-16418473 | MS.gene023381:CDS | 35.0% | |
| TAATGTGGTCAACTAGTTGA+AGG | + | chr4.4:16420986-16421005 | MS.gene023381:intron | 35.0% | |
| TACCTATTAATCAGCTTGAG+GGG | - | chr4.4:16420905-16420924 | None:intergenic | 35.0% | |
| TAGGGAATCTCAAACATCAT+CGG | - | chr4.4:16420768-16420787 | None:intergenic | 35.0% | |
| TAGTTTCTTGTTCTGCCTTA+GGG | - | chr4.4:16420724-16420743 | None:intergenic | 35.0% | |
| TGAGTTGCAACACATCTTAA+TGG | + | chr4.4:16421215-16421234 | MS.gene023381:intron | 35.0% | |
| TTAGTTTCTTGTTCTGCCTT+AGG | - | chr4.4:16420725-16420744 | None:intergenic | 35.0% | |
| ! | ATATTTCTGTTGGCTGTAAC+AGG | + | chr4.4:16421185-16421204 | MS.gene023381:intron | 35.0% |
| ! | ATGCTACTTATCATCTCTTC+TGG | + | chr4.4:16420415-16420434 | MS.gene023381:intron | 35.0% |
| ! | CATACAGCCATCTAATTTTC+TGG | + | chr4.4:16421340-16421359 | MS.gene023381:intron | 35.0% |
| ! | CATTTCAGGTGATGGTTATA+AGG | + | chr4.4:16419921-16419940 | MS.gene023381:intron | 35.0% |
| ! | TCAATTCTTGACTTGACCAA+TGG | + | chr4.4:16419164-16419183 | MS.gene023381:intron | 35.0% |
| ! | TGTGTTTTGTCTTGCATTTC+AGG | + | chr4.4:16419907-16419926 | MS.gene023381:intron | 35.0% |
| ! | TTGTGATTCAGGTATTGTGA+GGG | + | chr4.4:16421419-16421438 | MS.gene023381:intron | 35.0% |
| !! | TGGAGAGTATTTCAGAGATT+GGG | - | chr4.4:16420498-16420517 | None:intergenic | 35.0% |
| !!! | CACTCATTGGTGTTTTGTTT+AGG | - | chr4.4:16420685-16420704 | None:intergenic | 35.0% |
| !!! | CGTAACAGATCCCTTTTTTT+TGG | + | chr4.4:16419638-16419657 | MS.gene023381:intron | 35.0% |
| !!! | TGACGAGACATTTTGGAATT+TGG | - | chr4.4:16420616-16420635 | None:intergenic | 35.0% |
| AACAATACTAGCATTCAGGC+TGG | - | chr4.4:16420518-16420537 | None:intergenic | 40.0% | |
| AAGGACCTAAAAAGTTACCC+TGG | + | chr4.4:16420557-16420576 | MS.gene023381:CDS | 40.0% | |
| ACCTATTAATCAGCTTGAGG+GGG | - | chr4.4:16420904-16420923 | None:intergenic | 40.0% | |
| AGCCAACAATACTAGCATTC+AGG | - | chr4.4:16420522-16420541 | None:intergenic | 40.0% | |
| AGCCTGAATGCTAGTATTGT+TGG | + | chr4.4:16420517-16420536 | MS.gene023381:CDS | 40.0% | |
| ATATCCCTATTTGTTTCCCC+AGG | + | chr4.4:16420202-16420221 | MS.gene023381:intron | 40.0% | |
| ATCTTGTAATGACGAGCACA+TGG | + | chr4.4:16421315-16421334 | MS.gene023381:intron | 40.0% | |
| ATGAATGCGCTCACTTGTAA+TGG | + | chr4.4:16419584-16419603 | MS.gene023381:intron | 40.0% | |
| CGAATCTTTATGCTTGCGAT+GGG | - | chr4.4:16420369-16420388 | None:intergenic | 40.0% | |
| CTTGCGATGGGAACATTATA+AGG | - | chr4.4:16420357-16420376 | None:intergenic | 40.0% | |
| GCTCCACAAACAAATGTGAT+GGG | - | chr4.4:16418364-16418383 | None:intergenic | 40.0% | |
| GTAAGAGAGATAAAACCAGG+AGG | - | chr4.4:16418496-16418515 | None:intergenic | 40.0% | |
| GTCTTCTACAAACAGTGAGT+TGG | + | chr4.4:16419486-16419505 | MS.gene023381:intron | 40.0% | |
| TAGCAGTGAGGTACACTAAA+AGG | + | chr4.4:16421128-16421147 | MS.gene023381:intron | 40.0% | |
| TATCCCTATTTGTTTCCCCA+GGG | + | chr4.4:16420203-16420222 | MS.gene023381:intron | 40.0% | |
| TCAAACTTATGGTAGCAGTG+AGG | + | chr4.4:16421116-16421135 | MS.gene023381:intron | 40.0% | |
| TCGAATCTTTATGCTTGCGA+TGG | - | chr4.4:16420370-16420389 | None:intergenic | 40.0% | |
| TCTATGTACATGAGACCCTA+AGG | + | chr4.4:16420706-16420725 | MS.gene023381:intron | 40.0% | |
| TGCTCCACAAACAAATGTGA+TGG | - | chr4.4:16418365-16418384 | None:intergenic | 40.0% | |
| TGTTGTGGGATGTAAATGTC+TGG | - | chr4.4:16418298-16418317 | None:intergenic | 40.0% | |
| TTACAAGATCAGAAGACCAG+AGG | - | chr4.4:16421304-16421323 | None:intergenic | 40.0% | |
| TTGACCACATTACTGCCAAA+GGG | - | chr4.4:16420978-16420997 | None:intergenic | 40.0% | |
| TTGGAAAGTTCGGGTCAAAT+GGG | + | chr4.4:16420025-16420044 | MS.gene023381:CDS | 40.0% | |
| ! | ATTTGAAGCCTTCTACACGA+AGG | - | chr4.4:16421027-16421046 | None:intergenic | 40.0% |
| ! | CAACCTATGACGAGACATTT+TGG | - | chr4.4:16420623-16420642 | None:intergenic | 40.0% |
| ! | CTTGTGATTCAGGTATTGTG+AGG | + | chr4.4:16421418-16421437 | MS.gene023381:intron | 40.0% |
| ! | GTAATTGAGTCTGAGACCAT+TGG | - | chr4.4:16419183-16419202 | None:intergenic | 40.0% |
| ! | TATACCTCTCTGGTGTTTTC+AGG | - | chr4.4:16418986-16419005 | None:intergenic | 40.0% |
| ! | TGTGATTCAGGTATTGTGAG+GGG | + | chr4.4:16421420-16421439 | MS.gene023381:intron | 40.0% |
| ! | TTGTCTTGCATTTCAGGTGA+TGG | + | chr4.4:16419913-16419932 | MS.gene023381:intron | 40.0% |
| !! | CTGGAGAGTATTTCAGAGAT+TGG | - | chr4.4:16420499-16420518 | None:intergenic | 40.0% |
| !!! | CTTGTCACTTTTTTCATGGG+AGG | + | chr4.4:16418810-16418829 | MS.gene023381:intron | 40.0% |
| AAAAAGTTACCCTGGTGCCT+TGG | + | chr4.4:16420565-16420584 | MS.gene023381:CDS | 45.0% | |
| AAACCAGGAGGAGTAAACTC+AGG | - | chr4.4:16418484-16418503 | None:intergenic | 45.0% | |
| AATACCTCTGGCTGGGTTAA+AGG | + | chr4.4:16419794-16419813 | MS.gene023381:CDS | 45.0% | |
| ATAAGGACAGTGAGAGGTCA+AGG | - | chr4.4:16420340-16420359 | None:intergenic | 45.0% | |
| ATTGAGGAGATTTCGCGAGA+AGG | - | chr4.4:16418407-16418426 | None:intergenic | 45.0% | |
| CAAGTTACCTACCAAGACCA+AGG | - | chr4.4:16420585-16420604 | None:intergenic | 45.0% | |
| CAGCTTGTGACCATTGTTGT+GGG | - | chr4.4:16418312-16418331 | None:intergenic | 45.0% | |
| CCTCCCATCACATTTGTTTG+TGG | + | chr4.4:16418358-16418377 | MS.gene023381:CDS | 45.0% | |
| CCTCTTGTAGTGAATACCTC+TGG | + | chr4.4:16419782-16419801 | MS.gene023381:CDS | 45.0% | |
| CTCGGTCGCATCTAGTTAAT+AGG | - | chr4.4:16418432-16418451 | None:intergenic | 45.0% | |
| GGCTTAGCAGTTGAATCTGA+AGG | + | chr4.4:16420538-16420557 | MS.gene023381:CDS | 45.0% | |
| GTGGGATGTAAATGTCTGGA+AGG | - | chr4.4:16418294-16418313 | None:intergenic | 45.0% | |
| GTTGACCACATTACTGCCAA+AGG | - | chr4.4:16420979-16420998 | None:intergenic | 45.0% | |
| GTTGGAAAGTTCGGGTCAAA+TGG | + | chr4.4:16420024-16420043 | MS.gene023381:CDS | 45.0% | |
| GTTTGTGGAGCAAGTAACTG+CGG | + | chr4.4:16418373-16418392 | MS.gene023381:CDS | 45.0% | |
| TACACGAAGGCCGCAAAATA+GGG | - | chr4.4:16421014-16421033 | None:intergenic | 45.0% | |
| TCATTTGGAGGACTCGTTAG+TGG | - | chr4.4:16420793-16420812 | None:intergenic | 45.0% | |
| TCCCCCTCAAGCTGATTAAT+AGG | + | chr4.4:16420900-16420919 | MS.gene023381:intron | 45.0% | |
| TGAGATATATCCAGCTCGTC+AGG | + | chr4.4:16420074-16420093 | MS.gene023381:CDS | 45.0% | |
| TGTAGTGAATACCTCTGGCT+GGG | + | chr4.4:16419787-16419806 | MS.gene023381:CDS | 45.0% | |
| TTCAGAGAACCAAATGGCAC+AGG | - | chr4.4:16421483-16421502 | None:intergenic | 45.0% | |
| TTGTAGTGAATACCTCTGGC+TGG | + | chr4.4:16419786-16419805 | MS.gene023381:CDS | 45.0% | |
| TTTAATGAGTCCTGACGAGC+TGG | - | chr4.4:16420087-16420106 | None:intergenic | 45.0% | |
| TTTACCTTTAACCCAGCCAG+AGG | - | chr4.4:16419801-16419820 | None:intergenic | 45.0% | |
| TTTGACCCGAACTTTCCAAC+AGG | - | chr4.4:16420024-16420043 | None:intergenic | 45.0% | |
| ! | ACAAATGTGATGGGAGGAGT+TGG | - | chr4.4:16418355-16418374 | None:intergenic | 45.0% |
| ! | AGGAGTTGGACTGGATGTAA+TGG | - | chr4.4:16418341-16418360 | None:intergenic | 45.0% |
| ! | AGGCACCAGGGTAACTTTTT+AGG | - | chr4.4:16420565-16420584 | None:intergenic | 45.0% |
| ! | CCACAAACAAATGTGATGGG+AGG | - | chr4.4:16418361-16418380 | None:intergenic | 45.0% |
| ! | CTGATTACACCTGTGCCATT+TGG | + | chr4.4:16421471-16421490 | MS.gene023381:CDS | 45.0% |
| ! | GGGAACTGAGACTGTCTTTT+TGG | + | chr4.4:16419410-16419429 | MS.gene023381:intron | 45.0% |
| !! | AGGGGCATTGACACAGTTAA+AGG | + | chr4.4:16421438-16421457 | MS.gene023381:CDS | 45.0% |
| !! | CCAGAGGTATTCACTACAAG+AGG | - | chr4.4:16419785-16419804 | None:intergenic | 45.0% |
| !! | CTTGGTCTTGGTAGGTAACT+TGG | + | chr4.4:16420583-16420602 | MS.gene023381:intron | 45.0% |
| !!! | TTTTTAAATTTAAAAGTTTA+AGG | + | chr4.4:16418719-16418738 | MS.gene023381:intron | 5.0% |
| ACACGAAGGCCGCAAAATAG+GGG | - | chr4.4:16421013-16421032 | None:intergenic | 50.0% | |
| CAACCTGAGTTTACTCCTCC+TGG | + | chr4.4:16418478-16418497 | MS.gene023381:CDS | 50.0% | |
| CAGGAGGAGTAAACTCAGGT+TGG | - | chr4.4:16418480-16418499 | None:intergenic | 50.0% | |
| CATGCCTGAAAACACCAGAG+AGG | + | chr4.4:16418979-16418998 | MS.gene023381:CDS | 50.0% | |
| CTACACGAAGGCCGCAAAAT+AGG | - | chr4.4:16421015-16421034 | None:intergenic | 50.0% | |
| GAGGACTCGTTAGTGGCTTA+GGG | - | chr4.4:16420786-16420805 | None:intergenic | 50.0% | |
| GATTCGACGTGTTCTTCACG+AGG | + | chr4.4:16420383-16420402 | MS.gene023381:CDS | 50.0% | |
| GCACCCTGGGGAAACAAATA+GGG | - | chr4.4:16420209-16420228 | None:intergenic | 50.0% | |
| GCAGCTTGTGACCATTGTTG+TGG | - | chr4.4:16418313-16418332 | None:intergenic | 50.0% | |
| TTGGCCCTTTGGCAGTAATG+TGG | + | chr4.4:16420971-16420990 | MS.gene023381:intron | 50.0% | |
| ! | AGACGAGCATCCTTTTGAGC+AGG | - | chr4.4:16420231-16420250 | None:intergenic | 50.0% |
| ! | GTTGAAGGCCCCCTATTTTG+CGG | + | chr4.4:16421001-16421020 | MS.gene023381:intron | 50.0% |
| ! | TTTTGCGGCCTTCGTGTAGA+AGG | + | chr4.4:16421016-16421035 | MS.gene023381:intron | 50.0% |
| !! | CTCTCTGGTGTTTTCAGGCA+TGG | - | chr4.4:16418981-16419000 | None:intergenic | 50.0% |
| !! | TTCTGGAACATGGTCCTGCT+TGG | + | chr4.4:16420952-16420971 | MS.gene023381:intron | 50.0% |
| CACGAAGGCCGCAAAATAGG+GGG | - | chr4.4:16421012-16421031 | None:intergenic | 55.0% | |
| GGAGGACTCGTTAGTGGCTT+AGG | - | chr4.4:16420787-16420806 | None:intergenic | 55.0% | |
| GGCACCCTGGGGAAACAAAT+AGG | - | chr4.4:16420210-16420229 | None:intergenic | 55.0% | |
| TTACCCTGGTGCCTTGGTCT+TGG | + | chr4.4:16420571-16420590 | MS.gene023381:CDS | 55.0% | |
| TTACTGCCAAAGGGCCAAGC+AGG | - | chr4.4:16420969-16420988 | None:intergenic | 55.0% | |
| ! | ATCCTTTTGAGCAGGCACCC+TGG | - | chr4.4:16420223-16420242 | None:intergenic | 55.0% |
| ! | CTACCAAGACCAAGGCACCA+GGG | - | chr4.4:16420577-16420596 | None:intergenic | 55.0% |
| ! | TCCTTTTGAGCAGGCACCCT+GGG | - | chr4.4:16420222-16420241 | None:intergenic | 55.0% |
| ! | TGTGATGGGAGGAGTTGGAC+TGG | - | chr4.4:16418350-16418369 | None:intergenic | 55.0% |
| CATGGTCCTGCTTGGCCCTT+TGG | + | chr4.4:16420960-16420979 | MS.gene023381:intron | 60.0% | |
| ! | CCTACCAAGACCAAGGCACC+AGG | - | chr4.4:16420578-16420597 | None:intergenic | 60.0% |
| ! | CCTTTTGAGCAGGCACCCTG+GGG | - | chr4.4:16420221-16420240 | None:intergenic | 60.0% |
| !! | CCTGGTGCCTTGGTCTTGGT+AGG | + | chr4.4:16420575-16420594 | MS.gene023381:intron | 60.0% |
| ! | CCCCAGGGTGCCTGCTCAAA+AGG | + | chr4.4:16420218-16420237 | MS.gene023381:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 16418271 | 16421557 | 16418271 | ID=MS.gene023381 |
| chr4.4 | mRNA | 16418271 | 16421557 | 16418271 | ID=MS.gene023381.t1;Parent=MS.gene023381 |
| chr4.4 | exon | 16418271 | 16418538 | 16418271 | ID=MS.gene023381.t1.exon1;Parent=MS.gene023381.t1 |
| chr4.4 | CDS | 16418271 | 16418538 | 16418271 | ID=cds.MS.gene023381.t1;Parent=MS.gene023381.t1 |
| chr4.4 | exon | 16418967 | 16419000 | 16418967 | ID=MS.gene023381.t1.exon2;Parent=MS.gene023381.t1 |
| chr4.4 | CDS | 16418967 | 16419000 | 16418967 | ID=cds.MS.gene023381.t1;Parent=MS.gene023381.t1 |
| chr4.4 | exon | 16419646 | 16419815 | 16419646 | ID=MS.gene023381.t1.exon3;Parent=MS.gene023381.t1 |
| chr4.4 | CDS | 16419646 | 16419815 | 16419646 | ID=cds.MS.gene023381.t1;Parent=MS.gene023381.t1 |
| chr4.4 | exon | 16419929 | 16420112 | 16419929 | ID=MS.gene023381.t1.exon4;Parent=MS.gene023381.t1 |
| chr4.4 | CDS | 16419929 | 16420112 | 16419929 | ID=cds.MS.gene023381.t1;Parent=MS.gene023381.t1 |
| chr4.4 | exon | 16420224 | 16420404 | 16420224 | ID=MS.gene023381.t1.exon5;Parent=MS.gene023381.t1 |
| chr4.4 | CDS | 16420224 | 16420404 | 16420224 | ID=cds.MS.gene023381.t1;Parent=MS.gene023381.t1 |
| chr4.4 | exon | 16420493 | 16420592 | 16420493 | ID=MS.gene023381.t1.exon6;Parent=MS.gene023381.t1 |
| chr4.4 | CDS | 16420493 | 16420592 | 16420493 | ID=cds.MS.gene023381.t1;Parent=MS.gene023381.t1 |
| chr4.4 | exon | 16421430 | 16421557 | 16421430 | ID=MS.gene023381.t1.exon7;Parent=MS.gene023381.t1 |
| chr4.4 | CDS | 16421430 | 16421557 | 16421430 | ID=cds.MS.gene023381.t1;Parent=MS.gene023381.t1 |
| Gene Sequence |
| Protein sequence |
