Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027347.t1 | XP_013448504.1 | 99.6 | 248 | 1 | 0 | 1 | 248 | 1 | 248 | 2.20E-130 | 474.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027347.t1 | P51430 | 91.5 | 248 | 21 | 0 | 1 | 248 | 1 | 248 | 5.5e-122 | 438.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027347.t1 | A0A072TZB9 | 99.6 | 248 | 1 | 0 | 1 | 248 | 1 | 248 | 1.6e-130 | 474.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene023381 | MS.gene027347 | PPI |
| MS.gene027347 | MS.gene011048 | PPI |
| MS.gene027347 | MS.gene39485 | PPI |
| MS.gene002470 | MS.gene027347 | PPI |
| MS.gene31991 | MS.gene027347 | PPI |
| MS.gene051272 | MS.gene027347 | PPI |
| MS.gene09187 | MS.gene027347 | PPI |
| MS.gene027347 | MS.gene09046 | PPI |
| MS.gene027347 | MS.gene26343 | PPI |
| MS.gene33828 | MS.gene027347 | PPI |
| MS.gene01066 | MS.gene027347 | PPI |
| MS.gene09188 | MS.gene027347 | PPI |
| MS.gene027347 | MS.gene023037 | PPI |
| MS.gene027347 | MS.gene08259 | PPI |
| MS.gene01449 | MS.gene027347 | PPI |
| MS.gene08260 | MS.gene027347 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027347.t1 | MTR_7g053160 | 99.597 | 248 | 1 | 0 | 1 | 248 | 1 | 248 | 0.0 | 499 |
| MS.gene027347.t1 | MTR_4g088595 | 96.371 | 248 | 9 | 0 | 1 | 248 | 1 | 248 | 4.86e-176 | 484 |
| MS.gene027347.t1 | MTR_2g014030 | 96.371 | 248 | 9 | 0 | 1 | 248 | 1 | 248 | 5.54e-176 | 484 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027347.t1 | AT5G10360 | 91.532 | 248 | 21 | 0 | 1 | 248 | 1 | 248 | 3.04e-166 | 459 |
| MS.gene027347.t1 | AT4G31700 | 91.200 | 250 | 20 | 1 | 1 | 248 | 1 | 250 | 5.13e-158 | 438 |
| MS.gene027347.t1 | AT5G10360 | 73.387 | 248 | 14 | 1 | 1 | 248 | 1 | 196 | 2.64e-121 | 343 |
| MS.gene027347.t1 | AT4G31700 | 89.894 | 188 | 17 | 1 | 63 | 248 | 1 | 188 | 3.47e-108 | 310 |
Find 73 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATCCTTGCTCTCTTTCTT+TGG | 0.173886 | 7.4:+50046095 | None:intergenic |
| GAATTTACAGACGAGCATTT+TGG | 0.200392 | 7.4:-50048230 | MS.gene027347:intron |
| GGCGATTCTCTTCTTCTTAT+CGG | 0.223662 | 7.4:+50046072 | None:intergenic |
| ACCAGAAGCTTCTTGCTTCC+AGG | 0.274677 | 7.4:-50046024 | MS.gene027347:CDS |
| TTATTTGGTTGCAGGGAAAA+AGG | 0.319097 | 7.4:-50046164 | MS.gene027347:intron |
| TGGTGCTAACAGGAATTTAA+AGG | 0.325501 | 7.4:-50048082 | MS.gene027347:intron |
| AGTAACTAGTCTTTGTATCT+TGG | 0.331940 | 7.4:+50046129 | None:intergenic |
| CGGATCTTGGACGCTCTCTT+AGG | 0.339335 | 7.4:+50047510 | None:intergenic |
| GTTGAAAAGCTTACGGATCT+TGG | 0.369922 | 7.4:+50047497 | None:intergenic |
| CTCTTTCTTTGGAGTGTAAG+AGG | 0.370544 | 7.4:+50046106 | None:intergenic |
| GTGTTCGTCTGTTGCTTCAC+AGG | 0.378377 | 7.4:-50047985 | MS.gene027347:CDS |
| ACCTGGAAGCAAGAAGCTTC+TGG | 0.379692 | 7.4:+50046023 | None:intergenic |
| AGACCTTTCTGTTCTGAACT+TGG | 0.382910 | 7.4:-50047601 | MS.gene027347:CDS |
| GTCAGGACTCCCTGCTTCAT+TGG | 0.387254 | 7.4:+50048016 | None:intergenic |
| GTAACTAGTCTTTGTATCTT+GGG | 0.392706 | 7.4:+50046130 | None:intergenic |
| CTCTTAGGACCTCTCATCCT+TGG | 0.398073 | 7.4:+50047525 | None:intergenic |
| GACGAACACGGCCAGGGGTC+AGG | 0.412360 | 7.4:+50047999 | None:intergenic |
| GGATTTCACAAGAGGTCAAT+GGG | 0.417305 | 7.4:-50048200 | MS.gene027347:CDS |
| TGCCTTAGCACTGGAAATCC+TGG | 0.423380 | 7.4:+50045952 | None:intergenic |
| GCTTCTTGCTTCCAGGTTGA+AGG | 0.423629 | 7.4:-50046017 | MS.gene027347:CDS |
| CTTGCTTTCGTGGGCATGGA+AGG | 0.423949 | 7.4:-50047674 | MS.gene027347:CDS |
| TCCTTGTTTGTCACAACCTC+CGG | 0.446389 | 7.4:+50048042 | None:intergenic |
| AAGTTCAGAACAGAAAGGTC+TGG | 0.453108 | 7.4:+50047603 | None:intergenic |
| CTCTCTCTGCTCCTTCAACC+TGG | 0.453539 | 7.4:+50046006 | None:intergenic |
| TGTTCGTCTGTTGCTTCACA+GGG | 0.455437 | 7.4:-50047984 | MS.gene027347:CDS |
| AGCAACAGACGAACACGGCC+AGG | 0.465092 | 7.4:+50047992 | None:intergenic |
| ACTCCTTGCTTTCGTGGGCA+TGG | 0.465842 | 7.4:-50047678 | MS.gene027347:CDS |
| ACAAGGATTTCCAATGAAGC+AGG | 0.479949 | 7.4:-50048026 | MS.gene027347:CDS |
| GAACTTGGTAATTGTGAAGA+AGG | 0.488543 | 7.4:-50047586 | MS.gene027347:CDS |
| TAGACAGGTTGAAAAGCTTA+CGG | 0.491080 | 7.4:+50047490 | None:intergenic |
| ACAGGAACTCCTTGCTTTCG+TGG | 0.493316 | 7.4:-50047684 | MS.gene027347:intron |
| CGCAGGAGGAAGTCCGTTCG+TGG | 0.499221 | 7.4:-50047639 | MS.gene027347:CDS |
| CGTGGGCATGGAAGGCGTAA+TGG | 0.499837 | 7.4:-50047666 | MS.gene027347:CDS |
| GAGGTCAATGGGGATGCTCT+TGG | 0.500199 | 7.4:-50048189 | MS.gene027347:CDS |
| AGGATTTCACAAGAGGTCAA+TGG | 0.507253 | 7.4:-50048201 | MS.gene027347:CDS |
| ATCCAGGATTTCCAGTGCTA+AGG | 0.509483 | 7.4:-50045954 | MS.gene027347:CDS |
| TCACATCATCATCCTTAGAC+AGG | 0.513297 | 7.4:+50047475 | None:intergenic |
| TTGGCTTCTCAACATCAGTC+AGG | 0.524142 | 7.4:+50047544 | None:intergenic |
| CTTCTCAACATCAGTCAGGC+CGG | 0.528672 | 7.4:+50047548 | None:intergenic |
| AGTTCAGAACAGAAAGGTCT+GGG | 0.537667 | 7.4:+50047604 | None:intergenic |
| TGTTGTAAATGTCCTACGGT+AGG | 0.539789 | 7.4:+50047437 | None:intergenic |
| AGGACATTTACAACAAAAGC+TGG | 0.541932 | 7.4:-50047429 | MS.gene027347:intron |
| TTCTCAACATCAGTCAGGCC+GGG | 0.544381 | 7.4:+50047549 | None:intergenic |
| AAGCAGGGAGTCCTGACCCC+TGG | 0.546007 | 7.4:-50048010 | MS.gene027347:CDS |
| GCTGACAATGCACCCACGAA+CGG | 0.547404 | 7.4:+50047626 | None:intergenic |
| GCAACAGACGAACACGGCCA+GGG | 0.547657 | 7.4:+50047993 | None:intergenic |
| CAGGAACTCCTTGCTTTCGT+GGG | 0.551855 | 7.4:-50047683 | MS.gene027347:CDS |
| GGCGTAATGGAGAGCGCAGG+AGG | 0.556424 | 7.4:-50047653 | MS.gene027347:CDS |
| CACTCCAAAGAAAGAGAGCA+AGG | 0.560832 | 7.4:-50046099 | MS.gene027347:CDS |
| AATGTTGCGAATCCCACCAC+TGG | 0.561300 | 7.4:-50048820 | MS.gene027347:CDS |
| TAAGGCAGCTGTCACCGCCT+AGG | 0.568165 | 7.4:-50045936 | None:intergenic |
| CTTCCATGCCCACGAAAGCA+AGG | 0.568809 | 7.4:+50047675 | None:intergenic |
| GGACAAGAGGATTTCACAAG+AGG | 0.571370 | 7.4:-50048208 | MS.gene027347:CDS |
| CAACAGACGAACACGGCCAG+GGG | 0.576712 | 7.4:+50047994 | None:intergenic |
| GGTGACAGCTGCCTTAGCAC+TGG | 0.594937 | 7.4:+50045943 | None:intergenic |
| GTTGAGAAGCCAAGGATGAG+AGG | 0.601224 | 7.4:-50047534 | MS.gene027347:CDS |
| AATCGCCAAGGCAAAATCAG+AGG | 0.625414 | 7.4:-50046056 | MS.gene027347:CDS |
| GCAGGAGGAAGTCCGTTCGT+GGG | 0.626781 | 7.4:-50047638 | MS.gene027347:CDS |
| CAAGGATTTCCAATGAAGCA+GGG | 0.632810 | 7.4:-50048025 | MS.gene027347:CDS |
| TGACTGATGTTGAGAAGCCA+AGG | 0.640224 | 7.4:-50047542 | MS.gene027347:CDS |
| GAAGGCGTAATGGAGAGCGC+AGG | 0.640543 | 7.4:-50047656 | MS.gene027347:CDS |
| CAATGGGGATGCTCTTGGCG+AGG | 0.648289 | 7.4:-50048184 | MS.gene027347:intron |
| AACTTGGTAATTGTGAAGAA+GGG | 0.654902 | 7.4:-50047585 | MS.gene027347:CDS |
| TGTGAAGCAACAGACGAACA+CGG | 0.657981 | 7.4:+50047987 | None:intergenic |
| TAAGAAGAAGAGAATCGCCA+AGG | 0.666176 | 7.4:-50046068 | MS.gene027347:CDS |
| AAGGGTGAGAATGATTTACC+CGG | 0.666590 | 7.4:-50047567 | MS.gene027347:CDS |
| TTACCAAGTTCAGAACAGAA+AGG | 0.669660 | 7.4:+50047598 | None:intergenic |
| ACCGGAGGTTGTGACAAACA+AGG | 0.687549 | 7.4:-50048043 | MS.gene027347:CDS |
| AGTATGTCAACACCTACCGT+AGG | 0.700274 | 7.4:-50047449 | MS.gene027347:CDS |
| GTTCGTCTGTTGCTTCACAG+GGG | 0.715022 | 7.4:-50047983 | MS.gene027347:intron |
| GATTTCACAAGAGGTCAATG+GGG | 0.738312 | 7.4:-50048199 | MS.gene027347:CDS |
| TGTCTAAGGATGATGATGTG+AGG | 0.746514 | 7.4:-50047473 | MS.gene027347:CDS |
| TGGTATGACAGCAACCTAGG+CGG | 0.774656 | 7.4:+50045922 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAATTTATCATCAAAT+AGG | + | chr7.4:50047042-50047061 | None:intergenic | 10.0% |
| !! | CATTCTATTAAATATAAATA+AGG | + | chr7.4:50048341-50048360 | None:intergenic | 10.0% |
| !! | TTAAAATAAACAAGTAAAAT+GGG | + | chr7.4:50046153-50046172 | None:intergenic | 10.0% |
| !!! | TACAAATTTAAAATCTTTTT+GGG | + | chr7.4:50046242-50046261 | None:intergenic | 10.0% |
| !!! | TTTAAAATAAACAAGTAAAA+TGG | + | chr7.4:50046154-50046173 | None:intergenic | 10.0% |
| !! | ATATATATTCTAAATAGTAC+TGG | - | chr7.4:50048709-50048728 | MS.gene027347:intron | 15.0% |
| !! | TTTAACCTTATTATATCAAT+CGG | - | chr7.4:50048089-50048108 | MS.gene027347:intron | 15.0% |
| !! | TTTATTAAAATATCAATCTG+TGG | - | chr7.4:50047543-50047562 | MS.gene027347:CDS | 15.0% |
| !!! | ATTTTTAATAGAAATAGGTA+GGG | + | chr7.4:50047134-50047153 | None:intergenic | 15.0% |
| !!! | GATTGATATTTTAATAAACA+AGG | + | chr7.4:50047541-50047560 | None:intergenic | 15.0% |
| !!! | GTACAAATTTAAAATCTTTT+TGG | + | chr7.4:50046243-50046262 | None:intergenic | 15.0% |
| !!! | TATTTTTAATAGAAATAGGT+AGG | + | chr7.4:50047135-50047154 | None:intergenic | 15.0% |
| !!! | TTGTTTTTTGTGATATATAT+TGG | - | chr7.4:50046569-50046588 | MS.gene027347:intron | 15.0% |
| !! | AAAAAAAACAACGAGAATTA+TGG | + | chr7.4:50045963-50045982 | None:intergenic | 20.0% |
| !! | AATAGAAAAATTACAAGGAT+GGG | + | chr7.4:50047501-50047520 | None:intergenic | 20.0% |
| !! | ATTGATTAGTATAAGAGTTA+AGG | - | chr7.4:50046275-50046294 | MS.gene027347:intron | 20.0% |
| !! | CAACTAATAGAAAAATTACA+AGG | + | chr7.4:50047506-50047525 | None:intergenic | 20.0% |
| !! | GATGATATATTAATATTGGT+TGG | - | chr7.4:50046601-50046620 | MS.gene027347:intron | 20.0% |
| !! | GTGTGATGATATATTAATAT+TGG | - | chr7.4:50046597-50046616 | MS.gene027347:intron | 20.0% |
| !! | TAATAGAAAAATTACAAGGA+TGG | + | chr7.4:50047502-50047521 | None:intergenic | 20.0% |
| !! | TTAATATACTATATCCTGTA+TGG | - | chr7.4:50048526-50048545 | MS.gene027347:intron | 20.0% |
| !! | TTGATTAGTATAAGAGTTAA+GGG | - | chr7.4:50046276-50046295 | MS.gene027347:intron | 20.0% |
| !!! | TACTATTATATCTTTTGAGT+CGG | - | chr7.4:50047095-50047114 | MS.gene027347:intron | 20.0% |
| !!! | TATATTAATATTGGTTGGAT+TGG | - | chr7.4:50046606-50046625 | MS.gene027347:intron | 20.0% |
| ! | AAAGTTTAACCATTTGATAC+AGG | + | chr7.4:50047654-50047673 | None:intergenic | 25.0% |
| ! | ACAGGATATAGTATATTAAC+AGG | + | chr7.4:50048525-50048544 | None:intergenic | 25.0% |
| ! | AGTGAAGTAAATGAATAAAG+CGG | - | chr7.4:50047853-50047872 | MS.gene027347:intron | 25.0% |
| ! | ATAGTTGTTAGCATAGAAAT+AGG | + | chr7.4:50047774-50047793 | None:intergenic | 25.0% |
| ! | ATCAAAATCAAGAAGGATAT+TGG | + | chr7.4:50047748-50047767 | None:intergenic | 25.0% |
| ! | ATCAGTCCAAATTATTTCAA+TGG | + | chr7.4:50048675-50048694 | None:intergenic | 25.0% |
| ! | CAAACTGTAACTGAATTATA+GGG | + | chr7.4:50048192-50048211 | None:intergenic | 25.0% |
| ! | CTATGTATCTTTGTAAAATC+TGG | - | chr7.4:50047910-50047929 | MS.gene027347:intron | 25.0% |
| ! | GTAAACAACTTAAGATTGTT+TGG | - | chr7.4:50046332-50046351 | MS.gene027347:intron | 25.0% |
| ! | TAGGTTTATCAAAATCAAGA+AGG | + | chr7.4:50047755-50047774 | None:intergenic | 25.0% |
| ! | TCTTAAAGCTGTATTATTCA+CGG | + | chr7.4:50047948-50047967 | None:intergenic | 25.0% |
| ! | TGATTCATTTATTCGTTAGA+AGG | - | chr7.4:50048315-50048334 | MS.gene027347:intron | 25.0% |
| ! | TGTAACCGATTGATATAATA+AGG | + | chr7.4:50048097-50048116 | None:intergenic | 25.0% |
| ! | TTAAAAAGAGGTCCATATTA+GGG | + | chr7.4:50047591-50047610 | None:intergenic | 25.0% |
| ! | TTTAAAAAGAGGTCCATATT+AGG | + | chr7.4:50047592-50047611 | None:intergenic | 25.0% |
| !! | AAAAGTATATTGTTGACTGT+AGG | - | chr7.4:50046988-50047007 | MS.gene027347:intron | 25.0% |
| !! | AACTAACACAAATTTTCTGA+TGG | + | chr7.4:50048411-50048430 | None:intergenic | 25.0% |
| !! | AATATGCACCCTTTAAAAAA+TGG | + | chr7.4:50048162-50048181 | None:intergenic | 25.0% |
| !! | AATATGGACCTCTTTTTAAA+GGG | - | chr7.4:50047592-50047611 | MS.gene027347:CDS | 25.0% |
| !! | TAATATGGACCTCTTTTTAA+AGG | - | chr7.4:50047591-50047610 | MS.gene027347:CDS | 25.0% |
| !! | TTTCTATTAGTTGTGTCATT+TGG | - | chr7.4:50047513-50047532 | MS.gene027347:CDS | 25.0% |
| !!! | ACTTATAGACTCTTTTGAAA+TGG | - | chr7.4:50048460-50048479 | MS.gene027347:intron | 25.0% |
| !!! | ATTGATTTTAGTCAATACTC+TGG | - | chr7.4:50048634-50048653 | MS.gene027347:intron | 25.0% |
| !!! | CTAAAATCAATTTGTTACAC+AGG | + | chr7.4:50048625-50048644 | None:intergenic | 25.0% |
| !!! | TCTAAATAGTACTGGTTATT+TGG | - | chr7.4:50048717-50048736 | MS.gene027347:intron | 25.0% |
| !!! | TTTGTGTTAGTTTTGTTGAT+TGG | - | chr7.4:50048419-50048438 | MS.gene027347:intron | 25.0% |
| !!! | TTTTTAAAGGGTGCATATTA+GGG | - | chr7.4:50048163-50048182 | MS.gene027347:intron | 25.0% |
| !!! | TTTTTTAAAGGGTGCATATT+AGG | - | chr7.4:50048162-50048181 | MS.gene027347:intron | 25.0% |
| AACTTAACAAACATGTGTGT+TGG | - | chr7.4:50047973-50047992 | MS.gene027347:intron | 30.0% | |
| ATAATGTTTGATGTCAGTGT+AGG | + | chr7.4:50046370-50046389 | None:intergenic | 30.0% | |
| ATCCTAAAAATTACACTGAC+AGG | + | chr7.4:50046955-50046974 | None:intergenic | 30.0% | |
| CTTAAATTATACACTACTCG+TGG | + | chr7.4:50048574-50048593 | None:intergenic | 30.0% | |
| GCAAACTGTAACTGAATTAT+AGG | + | chr7.4:50048193-50048212 | None:intergenic | 30.0% | |
| TCACATAACTCATAACAGAA+GGG | + | chr7.4:50048274-50048293 | None:intergenic | 30.0% | |
| TGGTGTCTATCTAACATTAA+GGG | + | chr7.4:50048490-50048509 | None:intergenic | 30.0% | |
| TGTGGATGTGATATAATTCA+GGG | - | chr7.4:50047561-50047580 | MS.gene027347:CDS | 30.0% | |
| TTCACATAACTCATAACAGA+AGG | + | chr7.4:50048275-50048294 | None:intergenic | 30.0% | |
| TTCAGGCCATTGAAATAATT+TGG | - | chr7.4:50048666-50048685 | MS.gene027347:intron | 30.0% | |
| TTTAAAAAATGGTCCAACCA+TGG | + | chr7.4:50048151-50048170 | None:intergenic | 30.0% | |
| ! | AACTTGGTAATTGTGAAGAA+GGG | - | chr7.4:50047311-50047330 | MS.gene027347:intron | 30.0% |
| ! | AATTTACAGACGAGCATTTT+GGG | - | chr7.4:50046667-50046686 | MS.gene027347:intron | 30.0% |
| ! | TATTTCTATGAATCCAAGCA+TGG | + | chr7.4:50046633-50046652 | None:intergenic | 30.0% |
| ! | TTGGTGTCTATCTAACATTA+AGG | + | chr7.4:50048491-50048510 | None:intergenic | 30.0% |
| ! | TTTTCATTGTTCACATGAAC+AGG | - | chr7.4:50047194-50047213 | MS.gene027347:intron | 30.0% |
| !! | AGTAACTAGTCTTTGTATCT+TGG | + | chr7.4:50048770-50048789 | None:intergenic | 30.0% |
| !! | CTTTTGTTGTAAATGTCCTA+CGG | + | chr7.4:50047466-50047485 | None:intergenic | 30.0% |
| !! | GTAACTAGTCTTTGTATCTT+GGG | + | chr7.4:50048769-50048788 | None:intergenic | 30.0% |
| !! | TTCCATCAAGCTTTAAAACT+TGG | - | chr7.4:50047826-50047845 | MS.gene027347:intron | 30.0% |
| !! | TTTAGTCAATACTCTGGTTT+TGG | - | chr7.4:50048640-50048659 | MS.gene027347:intron | 30.0% |
| !! | TTTTAAAGGGTGCATATTAG+GGG | - | chr7.4:50048164-50048183 | MS.gene027347:intron | 30.0% |
| !! | TTTTTAAAGGGTCCAAACAT+GGG | - | chr7.4:50047604-50047623 | MS.gene027347:CDS | 30.0% |
| !!! | ATGGTTGGACCATTTTTTAA+AGG | - | chr7.4:50048150-50048169 | MS.gene027347:intron | 30.0% |
| !!! | GGATACGTTTTTAAAATCAC+CGG | - | chr7.4:50046835-50046854 | MS.gene027347:intron | 30.0% |
| !!! | TGGTTGGACCATTTTTTAAA+GGG | - | chr7.4:50048151-50048170 | MS.gene027347:intron | 30.0% |
| !!! | TGTTGATTGGTTTTAGTACT+TGG | - | chr7.4:50048432-50048451 | MS.gene027347:intron | 30.0% |
| !!! | TGTTTTGAGAAAGTGAAATG+TGG | - | chr7.4:50046305-50046324 | MS.gene027347:intron | 30.0% |
| !!! | TTCCAAGTTTTAAAGCTTGA+TGG | + | chr7.4:50047831-50047850 | None:intergenic | 30.0% |
| AACGAGAATTATGGTTACAG+TGG | + | chr7.4:50045954-50045973 | None:intergenic | 35.0% | |
| AATCAAGAAGGATATTGGAC+TGG | + | chr7.4:50047743-50047762 | None:intergenic | 35.0% | |
| AGGACATTTACAACAAAAGC+TGG | - | chr7.4:50047467-50047486 | MS.gene027347:CDS | 35.0% | |
| ATCAAGAAGGATATTGGACT+GGG | + | chr7.4:50047742-50047761 | None:intergenic | 35.0% | |
| CACATAACTCATAACAGAAG+GGG | + | chr7.4:50048273-50048292 | None:intergenic | 35.0% | |
| CTCGTCTGTAAATTCAAGTA+GGG | + | chr7.4:50046661-50046680 | None:intergenic | 35.0% | |
| CTGTGGATGTGATATAATTC+AGG | - | chr7.4:50047560-50047579 | MS.gene027347:CDS | 35.0% | |
| GTGGATGTGATATAATTCAG+GGG | - | chr7.4:50047562-50047581 | MS.gene027347:CDS | 35.0% | |
| GTTTAGCAAAAAAGAGATCC+AGG | - | chr7.4:50048926-50048945 | MS.gene027347:intron | 35.0% | |
| TATCAATCGGTTACATTACC+TGG | - | chr7.4:50048102-50048121 | MS.gene027347:intron | 35.0% | |
| TCAACTTAACGTGTTAGTGT+CGG | + | chr7.4:50046394-50046413 | None:intergenic | 35.0% | |
| TGTTATTCTGCTCAACTTGT+CGG | - | chr7.4:50047679-50047698 | MS.gene027347:CDS | 35.0% | |
| TTAACAAACATGTGTGTTGG+AGG | - | chr7.4:50047976-50047995 | MS.gene027347:intron | 35.0% | |
| TTACCAAGTTCAGAACAGAA+AGG | + | chr7.4:50047301-50047320 | None:intergenic | 35.0% | |
| TTATTTGGTTGCAGGGAAAA+AGG | - | chr7.4:50048732-50048751 | MS.gene027347:intron | 35.0% | |
| TTGATTGTAATCACATGTGC+TGG | - | chr7.4:50046444-50046463 | MS.gene027347:intron | 35.0% | |
| ! | AGCCTGTCAGTGTAATTTTT+AGG | - | chr7.4:50046950-50046969 | MS.gene027347:intron | 35.0% |
| ! | AGTATATTGTTGACTGTAGG+TGG | - | chr7.4:50046991-50047010 | MS.gene027347:intron | 35.0% |
| ! | GAACTTGGTAATTGTGAAGA+AGG | - | chr7.4:50047310-50047329 | MS.gene027347:intron | 35.0% |
| ! | GAATTTACAGACGAGCATTT+TGG | - | chr7.4:50046666-50046685 | MS.gene027347:intron | 35.0% |
| ! | TAAGCTTTTCAACCTGTCTA+AGG | - | chr7.4:50047409-50047428 | MS.gene027347:intron | 35.0% |
| ! | TAGACAGGTTGAAAAGCTTA+CGG | + | chr7.4:50047409-50047428 | None:intergenic | 35.0% |
| ! | TGGTGCTAACAGGAATTTAA+AGG | - | chr7.4:50046814-50046833 | MS.gene027347:intron | 35.0% |
| ! | TGTTTGGACCCTTTAAAAAG+AGG | + | chr7.4:50047603-50047622 | None:intergenic | 35.0% |
| ! | TTTCCTAGAGTAGTGTCATT+TGG | - | chr7.4:50048364-50048383 | MS.gene027347:intron | 35.0% |
| !! | CTTTTTAAAGGGTCCAAACA+TGG | - | chr7.4:50047603-50047622 | MS.gene027347:CDS | 35.0% |
| !!! | TACGTTTTTAAAATCACCGG+AGG | - | chr7.4:50046838-50046857 | MS.gene027347:intron | 35.0% |
| !!! | TACTCTGGTTTTGGTTATTC+AGG | - | chr7.4:50048649-50048668 | MS.gene027347:intron | 35.0% |
| AAGGGTGAGAATGATTTACC+CGG | - | chr7.4:50047329-50047348 | MS.gene027347:intron | 40.0% | |
| AAGTTCAGAACAGAAAGGTC+TGG | + | chr7.4:50047296-50047315 | None:intergenic | 40.0% | |
| ACAAGGATTTCCAATGAAGC+AGG | - | chr7.4:50046870-50046889 | MS.gene027347:intron | 40.0% | |
| AGATAGAGGCAGCAATAAAG+GGG | - | chr7.4:50048036-50048055 | MS.gene027347:CDS | 40.0% | |
| AGGATTTCACAAGAGGTCAA+TGG | - | chr7.4:50046695-50046714 | MS.gene027347:intron | 40.0% | |
| AGTTCAGAACAGAAAGGTCT+GGG | + | chr7.4:50047295-50047314 | None:intergenic | 40.0% | |
| ATTCAGGGGTAACCCTAATA+TGG | - | chr7.4:50047576-50047595 | MS.gene027347:CDS | 40.0% | |
| CAAGGATTTCCAATGAAGCA+GGG | - | chr7.4:50046871-50046890 | MS.gene027347:intron | 40.0% | |
| CAATCCTTGCTCTCTTTCTT+TGG | + | chr7.4:50048804-50048823 | None:intergenic | 40.0% | |
| CATTTGATACAGGCAATAGC+CGG | + | chr7.4:50047644-50047663 | None:intergenic | 40.0% | |
| GAACCAAATGACACTACTCT+AGG | + | chr7.4:50048370-50048389 | None:intergenic | 40.0% | |
| GACATTTGCCATTATATCGC+TGG | - | chr7.4:50046794-50046813 | MS.gene027347:intron | 40.0% | |
| GAGATAGAGGCAGCAATAAA+GGG | - | chr7.4:50048035-50048054 | MS.gene027347:CDS | 40.0% | |
| GATTTCACAAGAGGTCAATG+GGG | - | chr7.4:50046697-50046716 | MS.gene027347:intron | 40.0% | |
| GCTCGTCTGTAAATTCAAGT+AGG | + | chr7.4:50046662-50046681 | None:intergenic | 40.0% | |
| GGATTTCACAAGAGGTCAAT+GGG | - | chr7.4:50046696-50046715 | MS.gene027347:intron | 40.0% | |
| GGCGATTCTCTTCTTCTTAT+CGG | + | chr7.4:50048827-50048846 | None:intergenic | 40.0% | |
| GTTGAAAAGCTTACGGATCT+TGG | + | chr7.4:50047402-50047421 | None:intergenic | 40.0% | |
| TAAGAAGAAGAGAATCGCCA+AGG | - | chr7.4:50048828-50048847 | MS.gene027347:intron | 40.0% | |
| TACAACACTCCTTACCAAGT+AGG | + | chr7.4:50047886-50047905 | None:intergenic | 40.0% | |
| TATCTCCAAGTCCAATTCCA+TGG | + | chr7.4:50048021-50048040 | None:intergenic | 40.0% | |
| TCAAGAAGGATATTGGACTG+GGG | + | chr7.4:50047741-50047760 | None:intergenic | 40.0% | |
| TCACATCATCATCCTTAGAC+AGG | + | chr7.4:50047424-50047443 | None:intergenic | 40.0% | |
| TGTTAGCACCAGCGATATAA+TGG | + | chr7.4:50046805-50046824 | None:intergenic | 40.0% | |
| TGTTGTAAATGTCCTACGGT+AGG | + | chr7.4:50047462-50047481 | None:intergenic | 40.0% | |
| TTAACAGGCATGCTTCAGTT+TGG | + | chr7.4:50048510-50048529 | None:intergenic | 40.0% | |
| ! | AGACCTTTCTGTTCTGAACT+TGG | - | chr7.4:50047295-50047314 | MS.gene027347:intron | 40.0% |
| ! | ATTATATCGCTGGTGCTAAC+AGG | - | chr7.4:50046804-50046823 | MS.gene027347:intron | 40.0% |
| ! | CAAATTTTCTGATGGCACCT+TGG | + | chr7.4:50048403-50048422 | None:intergenic | 40.0% |
| ! | TGATGGACGGTGACAAATAT+TGG | - | chr7.4:50046467-50046486 | MS.gene027347:intron | 40.0% |
| ! | TGTCTAAGGATGATGATGTG+AGG | - | chr7.4:50047423-50047442 | MS.gene027347:intron | 40.0% |
| !! | AATAGCCGGTTAAGTTGAAG+AGG | + | chr7.4:50047630-50047649 | None:intergenic | 40.0% |
| !! | AGTACTGGTTATTTGGTTGC+AGG | - | chr7.4:50048724-50048743 | MS.gene027347:intron | 40.0% |
| !! | CTCTTTCTTTGGAGTGTAAG+AGG | + | chr7.4:50048793-50048812 | None:intergenic | 40.0% |
| !! | GTACTGGTTATTTGGTTGCA+GGG | - | chr7.4:50048725-50048744 | MS.gene027347:intron | 40.0% |
| !! | GTAGTGTCATTTGGTTCATG+TGG | - | chr7.4:50048373-50048392 | MS.gene027347:intron | 40.0% |
| AAAGCGGAAACAGTCCTACT+TGG | - | chr7.4:50047869-50047888 | MS.gene027347:intron | 45.0% | |
| AAGTTGAAGAGGCCCATGTT+TGG | + | chr7.4:50047619-50047638 | None:intergenic | 45.0% | |
| AATCGCCAAGGCAAAATCAG+AGG | - | chr7.4:50048840-50048859 | MS.gene027347:intron | 45.0% | |
| ACACTGACAGGCTACGAAAA+AGG | + | chr7.4:50046943-50046962 | None:intergenic | 45.0% | |
| AGGTTGAACTAAGAGGTCCA+TGG | - | chr7.4:50048131-50048150 | MS.gene027347:intron | 45.0% | |
| AGTATGTCAACACCTACCGT+AGG | - | chr7.4:50047447-50047466 | MS.gene027347:CDS | 45.0% | |
| AGTGACCATGGAATTGGACT+TGG | - | chr7.4:50048013-50048032 | MS.gene027347:CDS | 45.0% | |
| ATCCAGGATTTCCAGTGCTA+AGG | - | chr7.4:50048942-50048961 | MS.gene027347:intron | 45.0% | |
| ATGGGCCTCTTCAACTTAAC+CGG | - | chr7.4:50047622-50047641 | MS.gene027347:CDS | 45.0% | |
| CACTCCAAAGAAAGAGAGCA+AGG | - | chr7.4:50048797-50048816 | MS.gene027347:CDS | 45.0% | |
| CGGCTATTGCCTGTATCAAA+TGG | - | chr7.4:50047642-50047661 | MS.gene027347:CDS | 45.0% | |
| GGAAACAGTCCTACTTGGTA+AGG | - | chr7.4:50047874-50047893 | MS.gene027347:intron | 45.0% | |
| GGAATTGGACTTGGAGATAG+AGG | - | chr7.4:50048022-50048041 | MS.gene027347:CDS | 45.0% | |
| GGACAAGAGGATTTCACAAG+AGG | - | chr7.4:50046688-50046707 | MS.gene027347:intron | 45.0% | |
| GGAGATAGAGGCAGCAATAA+AGG | - | chr7.4:50048034-50048053 | MS.gene027347:CDS | 45.0% | |
| GTGTTGGAGGAATGACAAAG+TGG | - | chr7.4:50047989-50048008 | MS.gene027347:CDS | 45.0% | |
| TGAACTAAGAGGTCCATGGT+TGG | - | chr7.4:50048135-50048154 | MS.gene027347:intron | 45.0% | |
| TGACTGATGTTGAGAAGCCA+AGG | - | chr7.4:50047354-50047373 | MS.gene027347:intron | 45.0% | |
| TGCTAGACAGTGACACATGT+GGG | - | chr7.4:50046494-50046513 | MS.gene027347:intron | 45.0% | |
| TGTGAAGCAACAGACGAACA+CGG | + | chr7.4:50046912-50046931 | None:intergenic | 45.0% | |
| TTGGCTTCTCAACATCAGTC+AGG | + | chr7.4:50047355-50047374 | None:intergenic | 45.0% | |
| TTGGTTCATGTGGCTTACCA+AGG | - | chr7.4:50048383-50048402 | MS.gene027347:intron | 45.0% | |
| ! | AGTGGTAGTGACCATGGAAT+TGG | - | chr7.4:50048007-50048026 | MS.gene027347:CDS | 45.0% |
| ! | ATGTTGACTGAGCACCATAC+AGG | + | chr7.4:50048543-50048562 | None:intergenic | 45.0% |
| ! | GTAATCACATGTGCTGGTGA+TGG | - | chr7.4:50046450-50046469 | MS.gene027347:intron | 45.0% |
| ! | TCCTTGTTTGTCACAACCTC+CGG | + | chr7.4:50046857-50046876 | None:intergenic | 45.0% |
| ! | TGACAAAGTGGTAGTGACCA+TGG | - | chr7.4:50048001-50048020 | MS.gene027347:CDS | 45.0% |
| ! | TGTTCGTCTGTTGCTTCACA+GGG | - | chr7.4:50046912-50046931 | MS.gene027347:intron | 45.0% |
| !! | AAGCTTTTTCTGGCATCCAG+TGG | + | chr7.4:50046095-50046114 | None:intergenic | 45.0% |
| !! | CGTCGATCTCAAGCTTTTTC+TGG | + | chr7.4:50046105-50046124 | None:intergenic | 45.0% |
| !! | TTTTTCTGGCATCCAGTGGT+GGG | + | chr7.4:50046091-50046110 | None:intergenic | 45.0% |
| !! | ACAAAATATTAAAATTATTT+AGG | + | chr7.4:50046219-50046238 | None:intergenic | 5.0% |
| !!! | AATTTATTTTTAATAGAAAT+AGG | + | chr7.4:50047139-50047158 | None:intergenic | 5.0% |
| AATGTTGCGAATCCCACCAC+TGG | - | chr7.4:50046076-50046095 | MS.gene027347:CDS | 50.0% | |
| ACAGGAACTCCTTGCTTTCG+TGG | - | chr7.4:50047212-50047231 | MS.gene027347:intron | 50.0% | |
| ACCAGAAGCTTCTTGCTTCC+AGG | - | chr7.4:50048872-50048891 | MS.gene027347:intron | 50.0% | |
| ACCGGAGGTTGTGACAAACA+AGG | - | chr7.4:50046853-50046872 | MS.gene027347:intron | 50.0% | |
| ACCTGGAAGCAAGAAGCTTC+TGG | + | chr7.4:50048876-50048895 | None:intergenic | 50.0% | |
| CAGGAACTCCTTGCTTTCGT+GGG | - | chr7.4:50047213-50047232 | MS.gene027347:intron | 50.0% | |
| CTCTTAGGACCTCTCATCCT+TGG | + | chr7.4:50047374-50047393 | None:intergenic | 50.0% | |
| CTTCTCAACATCAGTCAGGC+CGG | + | chr7.4:50047351-50047370 | None:intergenic | 50.0% | |
| GTGCTAGACAGTGACACATG+TGG | - | chr7.4:50046493-50046512 | MS.gene027347:intron | 50.0% | |
| GTTACATTACCTGGTGCAGC+AGG | - | chr7.4:50048111-50048130 | MS.gene027347:intron | 50.0% | |
| GTTGAGAAGCCAAGGATGAG+AGG | - | chr7.4:50047362-50047381 | MS.gene027347:intron | 50.0% | |
| TTAGTTCAACCTGCTGCACC+AGG | + | chr7.4:50048123-50048142 | None:intergenic | 50.0% | |
| TTCTCAACATCAGTCAGGCC+GGG | + | chr7.4:50047350-50047369 | None:intergenic | 50.0% | |
| ! | AGCTGCCTCTGATTTTGCCT+TGG | + | chr7.4:50048848-50048867 | None:intergenic | 50.0% |
| ! | GCTTCTTGCTTCCAGGTTGA+AGG | - | chr7.4:50048879-50048898 | MS.gene027347:intron | 50.0% |
| ! | GTGCAGCAGGTTGAACTAAG+AGG | - | chr7.4:50048124-50048143 | MS.gene027347:intron | 50.0% |
| ! | GTGTTCGTCTGTTGCTTCAC+AGG | - | chr7.4:50046911-50046930 | MS.gene027347:intron | 50.0% |
| ! | GTTCGTCTGTTGCTTCACAG+GGG | - | chr7.4:50046913-50046932 | MS.gene027347:intron | 50.0% |
| ! | TGCCTTAGCACTGGAAATCC+TGG | + | chr7.4:50048947-50048966 | None:intergenic | 50.0% |
| ! | TGGTTGGATTGGACCATGCT+TGG | - | chr7.4:50046617-50046636 | MS.gene027347:intron | 50.0% |
| !! | CTTTTTCTGGCATCCAGTGG+TGG | + | chr7.4:50046092-50046111 | None:intergenic | 50.0% |
| !! | TCACATGTGCTGGTGATGGA+CGG | - | chr7.4:50046454-50046473 | MS.gene027347:intron | 50.0% |
| !!! | GACGAGCATTTTGGGACAAG+AGG | - | chr7.4:50046675-50046694 | MS.gene027347:intron | 50.0% |
| ACTCCTTGCTTTCGTGGGCA+TGG | - | chr7.4:50047218-50047237 | MS.gene027347:intron | 55.0% | |
| CGGATCTTGGACGCTCTCTT+AGG | + | chr7.4:50047389-50047408 | None:intergenic | 55.0% | |
| CTCTCTCTGCTCCTTCAACC+TGG | + | chr7.4:50048893-50048912 | None:intergenic | 55.0% | |
| CTTCCATGCCCACGAAAGCA+AGG | + | chr7.4:50047224-50047243 | None:intergenic | 55.0% | |
| CTTGCTTTCGTGGGCATGGA+AGG | - | chr7.4:50047222-50047241 | MS.gene027347:intron | 55.0% | |
| GAGGTCAATGGGGATGCTCT+TGG | - | chr7.4:50046707-50046726 | MS.gene027347:intron | 55.0% | |
| GCTGACAATGCACCCACGAA+CGG | + | chr7.4:50047273-50047292 | None:intergenic | 55.0% | |
| GTCAGGACTCCCTGCTTCAT+TGG | + | chr7.4:50046883-50046902 | None:intergenic | 55.0% | |
| AGCAACAGACGAACACGGCC+AGG | + | chr7.4:50046907-50046926 | None:intergenic | 60.0% | |
| CAACAGACGAACACGGCCAG+GGG | + | chr7.4:50046905-50046924 | None:intergenic | 60.0% | |
| CAATGGGGATGCTCTTGGCG+AGG | - | chr7.4:50046712-50046731 | MS.gene027347:intron | 60.0% | |
| GCAACAGACGAACACGGCCA+GGG | + | chr7.4:50046906-50046925 | None:intergenic | 60.0% | |
| GCAGGAGGAAGTCCGTTCGT+GGG | - | chr7.4:50047258-50047277 | MS.gene027347:intron | 60.0% | |
| GGTGACAGCTGCCTTAGCAC+TGG | + | chr7.4:50048956-50048975 | None:intergenic | 60.0% | |
| ! | CGTGGGCATGGAAGGCGTAA+TGG | - | chr7.4:50047230-50047249 | MS.gene027347:intron | 60.0% |
| ! | GAAGGCGTAATGGAGAGCGC+AGG | - | chr7.4:50047240-50047259 | MS.gene027347:intron | 60.0% |
| AAGCAGGGAGTCCTGACCCC+TGG | - | chr7.4:50046886-50046905 | MS.gene027347:intron | 65.0% | |
| CGCAGGAGGAAGTCCGTTCG+TGG | - | chr7.4:50047257-50047276 | MS.gene027347:intron | 65.0% | |
| ! | GGCGTAATGGAGAGCGCAGG+AGG | - | chr7.4:50047243-50047262 | MS.gene027347:intron | 65.0% |
| GACGAACACGGCCAGGGGTC+AGG | + | chr7.4:50046900-50046919 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 50045937 | 50048981 | 50045937 | ID=MS.gene027347 |
| chr7.4 | mRNA | 50045937 | 50048981 | 50045937 | ID=MS.gene027347.t1;Parent=MS.gene027347 |
| chr7.4 | exon | 50048976 | 50048981 | 50048976 | ID=MS.gene027347.t1.exon1;Parent=MS.gene027347.t1 |
| chr7.4 | CDS | 50048976 | 50048981 | 50048976 | ID=cds.MS.gene027347.t1;Parent=MS.gene027347.t1 |
| chr7.4 | exon | 50048781 | 50048845 | 50048781 | ID=MS.gene027347.t1.exon2;Parent=MS.gene027347.t1 |
| chr7.4 | CDS | 50048781 | 50048845 | 50048781 | ID=cds.MS.gene027347.t1;Parent=MS.gene027347.t1 |
| chr7.4 | exon | 50048185 | 50048242 | 50048185 | ID=MS.gene027347.t1.exon3;Parent=MS.gene027347.t1 |
| chr7.4 | CDS | 50048185 | 50048242 | 50048185 | ID=cds.MS.gene027347.t1;Parent=MS.gene027347.t1 |
| chr7.4 | exon | 50047984 | 50048092 | 50047984 | ID=MS.gene027347.t1.exon4;Parent=MS.gene027347.t1 |
| chr7.4 | CDS | 50047984 | 50048092 | 50047984 | ID=cds.MS.gene027347.t1;Parent=MS.gene027347.t1 |
| chr7.4 | exon | 50047430 | 50047702 | 50047430 | ID=MS.gene027347.t1.exon5;Parent=MS.gene027347.t1 |
| chr7.4 | CDS | 50047430 | 50047702 | 50047430 | ID=cds.MS.gene027347.t1;Parent=MS.gene027347.t1 |
| chr7.4 | exon | 50045937 | 50046172 | 50045937 | ID=MS.gene027347.t1.exon6;Parent=MS.gene027347.t1 |
| chr7.4 | CDS | 50045937 | 50046172 | 50045937 | ID=cds.MS.gene027347.t1;Parent=MS.gene027347.t1 |
| Gene Sequence |
| Protein sequence |
