Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011048.t1 | XP_013448504.1 | 99.2 | 248 | 2 | 0 | 1 | 248 | 1 | 248 | 2.90E-130 | 474.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011048.t1 | P51430 | 91.1 | 248 | 22 | 0 | 1 | 248 | 1 | 248 | 7.2e-122 | 438.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011048.t1 | A0A072TZB9 | 99.2 | 248 | 2 | 0 | 1 | 248 | 1 | 248 | 2.1e-130 | 474.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene08260 | MS.gene011048 | PPI |
| MS.gene08259 | MS.gene011048 | PPI |
| MS.gene027347 | MS.gene011048 | PPI |
| MS.gene26343 | MS.gene011048 | PPI |
| MS.gene33828 | MS.gene011048 | PPI |
| MS.gene002470 | MS.gene011048 | PPI |
| MS.gene09188 | MS.gene011048 | PPI |
| MS.gene31991 | MS.gene011048 | PPI |
| MS.gene011048 | MS.gene09046 | PPI |
| MS.gene051272 | MS.gene011048 | PPI |
| MS.gene09187 | MS.gene011048 | PPI |
| MS.gene023037 | MS.gene011048 | PPI |
| MS.gene01066 | MS.gene011048 | PPI |
| MS.gene023381 | MS.gene011048 | PPI |
| MS.gene39485 | MS.gene011048 | PPI |
| MS.gene01449 | MS.gene011048 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011048.t1 | MTR_7g053160 | 99.194 | 248 | 2 | 0 | 1 | 248 | 1 | 248 | 0.0 | 497 |
| MS.gene011048.t1 | MTR_2g014030 | 96.371 | 248 | 9 | 0 | 1 | 248 | 1 | 248 | 2.78e-175 | 482 |
| MS.gene011048.t1 | MTR_4g088595 | 95.968 | 248 | 10 | 0 | 1 | 248 | 1 | 248 | 3.39e-175 | 482 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011048.t1 | AT5G10360 | 91.129 | 248 | 22 | 0 | 1 | 248 | 1 | 248 | 1.88e-165 | 457 |
| MS.gene011048.t1 | AT4G31700 | 90.800 | 250 | 21 | 1 | 1 | 248 | 1 | 250 | 2.57e-157 | 437 |
| MS.gene011048.t1 | AT5G10360 | 72.984 | 248 | 15 | 1 | 1 | 248 | 1 | 196 | 1.96e-120 | 341 |
| MS.gene011048.t1 | AT4G31700 | 89.362 | 188 | 18 | 1 | 63 | 248 | 1 | 188 | 1.46e-107 | 308 |
Find 74 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATCCTTGCTCTCTTTCTT+TGG | 0.173886 | 7.1:+49083963 | None:intergenic |
| GAATTTGCAGACGAGCATTT+TGG | 0.208379 | 7.1:-49085483 | MS.gene011048:intron |
| GGCGATTCTCTTCTTCTTAT+CGG | 0.223662 | 7.1:+49083940 | None:intergenic |
| ACCAGAAGCTTCTTGCTTCC+AGG | 0.274677 | 7.1:-49083892 | MS.gene011048:CDS |
| TTATTTGGTTGCAGGGAAAA+AGG | 0.319097 | 7.1:-49084032 | MS.gene011048:intron |
| TGGTGCTAACAGGAATTTAA+AGG | 0.325501 | 7.1:-49085335 | MS.gene011048:intron |
| AGTAACTAGTCTTTGTATCT+TGG | 0.331940 | 7.1:+49083997 | None:intergenic |
| CGGATCTTGGACGCTCTCTT+AGG | 0.339335 | 7.1:+49084754 | None:intergenic |
| GTTGAAAAGCTTACGGATCT+TGG | 0.369922 | 7.1:+49084741 | None:intergenic |
| CTCTTTCTTTGGAGTGTAAG+AGG | 0.370544 | 7.1:+49083974 | None:intergenic |
| GTGTTCGTCTGTTGCTTCAC+AGG | 0.378377 | 7.1:-49085238 | MS.gene011048:CDS |
| ACCTGGAAGCAAGAAGCTTC+TGG | 0.379692 | 7.1:+49083891 | None:intergenic |
| GTCAGGACTCCCTGCTTCAT+TGG | 0.387254 | 7.1:+49085269 | None:intergenic |
| GTAACTAGTCTTTGTATCTT+GGG | 0.392706 | 7.1:+49083998 | None:intergenic |
| CTCTTAGGACCTCTCATCCT+TGG | 0.398073 | 7.1:+49084769 | None:intergenic |
| GACGAACACGGCCAGGGGTC+AGG | 0.412360 | 7.1:+49085252 | None:intergenic |
| GGATTTCACAAGAGGTCAAT+GGG | 0.417305 | 7.1:-49085453 | MS.gene011048:CDS |
| GCTTCTTGCTTCCAGGTTGA+AGG | 0.423629 | 7.1:-49083885 | MS.gene011048:CDS |
| CTTGCTTTCGTGGGCATGGA+AGG | 0.423949 | 7.1:-49084918 | MS.gene011048:CDS |
| TCCTTGTTTGTCACAACCTC+CGG | 0.446389 | 7.1:+49085295 | None:intergenic |
| AGACCTATCTGTTCTGAACT+TGG | 0.452234 | 7.1:-49084845 | MS.gene011048:CDS |
| AAGTTCAGAACAGATAGGTC+TGG | 0.453108 | 7.1:+49084847 | None:intergenic |
| CTCTCTCTGCTCCTTCAACC+TGG | 0.453539 | 7.1:+49083874 | None:intergenic |
| TGTTCGTCTGTTGCTTCACA+GGG | 0.455437 | 7.1:-49085237 | MS.gene011048:CDS |
| TGCCTTAGCACCGGAAATCC+TGG | 0.457259 | 7.1:+49083820 | None:intergenic |
| AGCAACAGACGAACACGGCC+AGG | 0.465092 | 7.1:+49085245 | None:intergenic |
| ACTCCTTGCTTTCGTGGGCA+TGG | 0.465842 | 7.1:-49084922 | MS.gene011048:CDS |
| CTTCTCAACATCGGTCAGGC+CGG | 0.479719 | 7.1:+49084792 | None:intergenic |
| ACAAGGATTTCCAATGAAGC+AGG | 0.479949 | 7.1:-49085279 | MS.gene011048:CDS |
| GAACTTGGTAATTGTGAAGA+AGG | 0.488543 | 7.1:-49084830 | MS.gene011048:CDS |
| TAGACAGGTTGAAAAGCTTA+CGG | 0.491080 | 7.1:+49084734 | None:intergenic |
| ACAGGAACTCCTTGCTTTCG+TGG | 0.493316 | 7.1:-49084928 | MS.gene011048:intron |
| CGTGGGCATGGAAGGCGTAA+TGG | 0.499837 | 7.1:-49084910 | MS.gene011048:CDS |
| TTCTCAACATCGGTCAGGCC+GGG | 0.500903 | 7.1:+49084793 | None:intergenic |
| GAGGTCAATGGGGATGCTCT+TGG | 0.504931 | 7.1:-49085442 | MS.gene011048:CDS |
| TTGGCTTCTCAACATCGGTC+AGG | 0.507183 | 7.1:+49084788 | None:intergenic |
| AGGATTTCACAAGAGGTCAA+TGG | 0.507253 | 7.1:-49085454 | MS.gene011048:CDS |
| CGCAGGAGGAAGTCCGTTCG+TGG | 0.512082 | 7.1:-49084883 | MS.gene011048:CDS |
| TCACATCATCATCCTTAGAC+AGG | 0.513297 | 7.1:+49084719 | None:intergenic |
| ATCCAGGATTTCCGGTGCTA+AGG | 0.513872 | 7.1:-49083822 | MS.gene011048:CDS |
| TGTTGTAAATGTCCTACGGT+AGG | 0.539789 | 7.1:+49084681 | None:intergenic |
| AGGACATTTACAACAAAAGC+TGG | 0.541932 | 7.1:-49084673 | MS.gene011048:intron |
| AGTTCAGAACAGATAGGTCT+GGG | 0.542405 | 7.1:+49084848 | None:intergenic |
| AAGCAGGGAGTCCTGACCCC+TGG | 0.546007 | 7.1:-49085263 | MS.gene011048:CDS |
| GCTGACAATGCACCCACGAA+CGG | 0.547404 | 7.1:+49084870 | None:intergenic |
| GCAACAGACGAACACGGCCA+GGG | 0.547657 | 7.1:+49085246 | None:intergenic |
| CAGGAACTCCTTGCTTTCGT+GGG | 0.551855 | 7.1:-49084927 | MS.gene011048:CDS |
| CACTCCAAAGAAAGAGAGCA+AGG | 0.560832 | 7.1:-49083967 | MS.gene011048:CDS |
| AATGTTGCGAATCCCACCAC+TGG | 0.561300 | 7.1:-49086072 | MS.gene011048:CDS |
| TAAGGCAGCTGTCACCGCCT+AGG | 0.568165 | 7.1:-49083804 | None:intergenic |
| CTTCCATGCCCACGAAAGCA+AGG | 0.568809 | 7.1:+49084919 | None:intergenic |
| GGACAAGAGGATTTCACAAG+AGG | 0.571370 | 7.1:-49085461 | MS.gene011048:CDS |
| CAACAGACGAACACGGCCAG+GGG | 0.576712 | 7.1:+49085247 | None:intergenic |
| GGTGACAGCTGCCTTAGCAC+CGG | 0.587379 | 7.1:+49083811 | None:intergenic |
| TGACCGATGTTGAGAAGCCA+AGG | 0.592857 | 7.1:-49084786 | MS.gene011048:CDS |
| CATCCTTGGCTTCTCAACAT+CGG | 0.602359 | 7.1:+49084783 | None:intergenic |
| GTTGAGAAGCCAAGGATGAG+AGG | 0.608216 | 7.1:-49084778 | MS.gene011048:CDS |
| AATCGCCAAGGCAAAATCAG+AGG | 0.625414 | 7.1:-49083924 | MS.gene011048:CDS |
| CAAGGATTTCCAATGAAGCA+GGG | 0.632810 | 7.1:-49085278 | MS.gene011048:CDS |
| TTACCAAGTTCAGAACAGAT+AGG | 0.634384 | 7.1:+49084842 | None:intergenic |
| CAATGGGGATGCTCTTGGTG+AGG | 0.642872 | 7.1:-49085437 | MS.gene011048:intron |
| GCAGGAGGAAGTCCGTTCGT+GGG | 0.643708 | 7.1:-49084882 | MS.gene011048:CDS |
| GGCGTAATGGAGAACGCAGG+AGG | 0.652269 | 7.1:-49084897 | MS.gene011048:CDS |
| AACTTGGTAATTGTGAAGAA+GGG | 0.654902 | 7.1:-49084829 | MS.gene011048:CDS |
| TGTGAAGCAACAGACGAACA+CGG | 0.657981 | 7.1:+49085240 | None:intergenic |
| TAAGAAGAAGAGAATCGCCA+AGG | 0.666176 | 7.1:-49083936 | MS.gene011048:CDS |
| AAGGGTGAGAATGATTTACC+CGG | 0.666590 | 7.1:-49084811 | MS.gene011048:CDS |
| ACCGGAGGTTGTGACAAACA+AGG | 0.687549 | 7.1:-49085296 | MS.gene011048:CDS |
| AGTATGTCAACACCTACCGT+AGG | 0.700274 | 7.1:-49084693 | MS.gene011048:CDS |
| GTTCGTCTGTTGCTTCACAG+GGG | 0.715022 | 7.1:-49085236 | MS.gene011048:intron |
| GAAGGCGTAATGGAGAACGC+AGG | 0.718249 | 7.1:-49084900 | MS.gene011048:CDS |
| GATTTCACAAGAGGTCAATG+GGG | 0.738312 | 7.1:-49085452 | MS.gene011048:CDS |
| TGTCTAAGGATGATGATGTG+AGG | 0.746514 | 7.1:-49084717 | MS.gene011048:CDS |
| TGGTATGACAGCAACCTAGG+CGG | 0.774656 | 7.1:+49083790 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAATTTATCATCAAAT+AGG | + | chr7.1:49084906-49084925 | None:intergenic | 10.0% |
| !! | CATTCTATTAAATATAAATA+AGG | + | chr7.1:49085592-49085611 | None:intergenic | 10.0% |
| !! | TTAAAATAAACAAGTAAAAT+GGG | + | chr7.1:49084018-49084037 | None:intergenic | 10.0% |
| !!! | ATTTTGATATATATTCTAAA+TGG | - | chr7.1:49085952-49085971 | MS.gene011048:intron | 10.0% |
| !!! | TACAAATTTAAAATCTTTTT+GGG | + | chr7.1:49084107-49084126 | None:intergenic | 10.0% |
| !!! | TTTAAAATAAACAAGTAAAA+TGG | + | chr7.1:49084019-49084038 | None:intergenic | 10.0% |
| !! | TTTATTAAAATATCAATCTG+TGG | - | chr7.1:49085414-49085433 | MS.gene011048:intron | 15.0% |
| !!! | ATTTTTAATAGAAATAGGTA+GGG | + | chr7.1:49085007-49085026 | None:intergenic | 15.0% |
| !!! | GATTGATATTTTAATAAACA+AGG | + | chr7.1:49085412-49085431 | None:intergenic | 15.0% |
| !!! | GTACAAATTTAAAATCTTTT+TGG | + | chr7.1:49084108-49084127 | None:intergenic | 15.0% |
| !!! | GTTTGATGATATATTAATAT+TGG | - | chr7.1:49084461-49084480 | MS.gene011048:intron | 15.0% |
| !!! | TATTTTTAATAGAAATAGGT+AGG | + | chr7.1:49085008-49085027 | None:intergenic | 15.0% |
| !!! | TTGTTTTTTGTGATATATAT+TGG | - | chr7.1:49084433-49084452 | MS.gene011048:intron | 15.0% |
| !! | AAAAAAAACAACGAGAATTA+TGG | + | chr7.1:49083831-49083850 | None:intergenic | 20.0% |
| !! | ATATATATTCTAAATGGTAC+TGG | - | chr7.1:49085958-49085977 | MS.gene011048:intron | 20.0% |
| !! | ATTGATTAGTATAAGAGTTA+AGG | - | chr7.1:49084140-49084159 | MS.gene011048:intron | 20.0% |
| !! | CAACTAATAGAAAAATTACA+AGG | + | chr7.1:49085378-49085397 | None:intergenic | 20.0% |
| !! | GATGATATATTAATATTGGT+TGG | - | chr7.1:49084465-49084484 | MS.gene011048:intron | 20.0% |
| !! | TAATAGAAAAATTACAAGGA+TGG | + | chr7.1:49085374-49085393 | None:intergenic | 20.0% |
| !! | TTAATATACTATATCCTGTA+TGG | - | chr7.1:49085777-49085796 | MS.gene011048:intron | 20.0% |
| !! | TTGATTAGTATAAGAGTTAA+GGG | - | chr7.1:49084141-49084160 | MS.gene011048:intron | 20.0% |
| ! | ACAGGATATAGTATATTAAC+AGG | + | chr7.1:49085776-49085795 | None:intergenic | 25.0% |
| ! | ATCAGTCCAAATTATTTCAA+TGG | + | chr7.1:49085924-49085943 | None:intergenic | 25.0% |
| ! | TGATTCATTTATTCATTAGC+AGG | - | chr7.1:49085566-49085585 | MS.gene011048:intron | 25.0% |
| ! | TGTAAACAACTTAGATTGTT+TGG | - | chr7.1:49084196-49084215 | MS.gene011048:intron | 25.0% |
| !! | TATTTCTATGAATCTGAACA+TGG | + | chr7.1:49084497-49084516 | None:intergenic | 25.0% |
| !! | TTTTCTATTAGTTGTGTCAT+TGG | - | chr7.1:49085384-49085403 | MS.gene011048:intron | 25.0% |
| !!! | ACTTATAGACTCTTTTGAAA+TGG | - | chr7.1:49085711-49085730 | MS.gene011048:intron | 25.0% |
| !!! | TACTACTATATCTTTTGAGT+CGG | - | chr7.1:49084968-49084987 | MS.gene011048:intron | 25.0% |
| !!! | TTTGTGTTAGTTTTGTTGAT+TGG | - | chr7.1:49085670-49085689 | MS.gene011048:intron | 25.0% |
| AACTAACACAAACTTTCTGA+TGG | + | chr7.1:49085662-49085681 | None:intergenic | 30.0% | |
| ATAATGTTTGATGTCAGTGT+AGG | + | chr7.1:49084234-49084253 | None:intergenic | 30.0% | |
| ATCCTAAAAATTACACTGAC+AGG | + | chr7.1:49084819-49084838 | None:intergenic | 30.0% | |
| CTTAAATTATACACTACTCG+TGG | + | chr7.1:49085825-49085844 | None:intergenic | 30.0% | |
| GACTAAAATCAATGTTACAC+AGG | + | chr7.1:49085876-49085895 | None:intergenic | 30.0% | |
| TCACATAACTCATAACAGAA+GGG | + | chr7.1:49085525-49085544 | None:intergenic | 30.0% | |
| TGGTGTCTATCTAACATTAA+GGG | + | chr7.1:49085741-49085760 | None:intergenic | 30.0% | |
| TTCACATAACTCATAACAGA+AGG | + | chr7.1:49085526-49085545 | None:intergenic | 30.0% | |
| TTCAGGCCATTGAAATAATT+TGG | - | chr7.1:49085915-49085934 | MS.gene011048:intron | 30.0% | |
| ! | AACTGTATATTGTTGACTGT+AGG | - | chr7.1:49084852-49084871 | MS.gene011048:CDS | 30.0% |
| ! | AACTTGGTAATTGTGAAGAA+GGG | - | chr7.1:49085184-49085203 | MS.gene011048:intron | 30.0% |
| ! | TTGGTGTCTATCTAACATTA+AGG | + | chr7.1:49085742-49085761 | None:intergenic | 30.0% |
| ! | TTTTCATTGTTCACATGAAC+AGG | - | chr7.1:49085067-49085086 | MS.gene011048:intron | 30.0% |
| !! | AGTAACTAGTCTTTGTATCT+TGG | + | chr7.1:49086019-49086038 | None:intergenic | 30.0% |
| !! | ATTGATTTTAGTCAATGCTC+TGG | - | chr7.1:49085883-49085902 | MS.gene011048:intron | 30.0% |
| !! | CTTTTGTTGTAAATGTCCTA+CGG | + | chr7.1:49085339-49085358 | None:intergenic | 30.0% |
| !! | GTAACTAGTCTTTGTATCTT+GGG | + | chr7.1:49086018-49086037 | None:intergenic | 30.0% |
| !! | TCTAAATGGTACTGGTTATT+TGG | - | chr7.1:49085966-49085985 | MS.gene011048:intron | 30.0% |
| !!! | GGATACGTTTTTAAAATCAC+CGG | - | chr7.1:49084699-49084718 | MS.gene011048:CDS | 30.0% |
| !!! | TGTTGATTGGTTTTAGTACT+TGG | - | chr7.1:49085683-49085702 | MS.gene011048:intron | 30.0% |
| !!! | TGTTTTGAGAAAGTGAAATG+TGG | - | chr7.1:49084170-49084189 | MS.gene011048:intron | 30.0% |
| AAAAAGAGATCCAGGATTTC+CGG | - | chr7.1:49086183-49086202 | MS.gene011048:intron | 35.0% | |
| AACGAGAATTATGGTTACAG+TGG | + | chr7.1:49083822-49083841 | None:intergenic | 35.0% | |
| ACATAACTCATAACAGAAGG+GGG | + | chr7.1:49085523-49085542 | None:intergenic | 35.0% | |
| AGGACATTTACAACAAAAGC+TGG | - | chr7.1:49085340-49085359 | MS.gene011048:intron | 35.0% | |
| CACATAACTCATAACAGAAG+GGG | + | chr7.1:49085524-49085543 | None:intergenic | 35.0% | |
| GTTTAGCAAAAAAGAGATCC+AGG | - | chr7.1:49086175-49086194 | MS.gene011048:intron | 35.0% | |
| TCAACTTAACGTGTTAGTGT+CGG | + | chr7.1:49084258-49084277 | None:intergenic | 35.0% | |
| TTACCAAGTTCAGAACAGAT+AGG | + | chr7.1:49085174-49085193 | None:intergenic | 35.0% | |
| TTATTTGGTTGCAGGGAAAA+AGG | - | chr7.1:49085981-49086000 | MS.gene011048:intron | 35.0% | |
| TTGATTGTAATCACATGTGC+TGG | - | chr7.1:49084308-49084327 | MS.gene011048:intron | 35.0% | |
| ! | AATTTGCAGACGAGCATTTT+GGG | - | chr7.1:49084531-49084550 | MS.gene011048:intron | 35.0% |
| ! | AGCCTGTCAGTGTAATTTTT+AGG | - | chr7.1:49084814-49084833 | MS.gene011048:CDS | 35.0% |
| ! | GAACTTGGTAATTGTGAAGA+AGG | - | chr7.1:49085183-49085202 | MS.gene011048:intron | 35.0% |
| ! | TAAGCTTTTCAACCTGTCTA+AGG | - | chr7.1:49085282-49085301 | MS.gene011048:CDS | 35.0% |
| ! | TAGACAGGTTGAAAAGCTTA+CGG | + | chr7.1:49085282-49085301 | None:intergenic | 35.0% |
| ! | TGGTGCTAACAGGAATTTAA+AGG | - | chr7.1:49084678-49084697 | MS.gene011048:CDS | 35.0% |
| ! | TGTATATTGTTGACTGTAGG+TGG | - | chr7.1:49084855-49084874 | MS.gene011048:CDS | 35.0% |
| ! | TTTCCTAGAGTAGTGTCATT+TGG | - | chr7.1:49085615-49085634 | MS.gene011048:intron | 35.0% |
| !! | TTTAGTCAATGCTCTGGTTT+TGG | - | chr7.1:49085889-49085908 | MS.gene011048:intron | 35.0% |
| !!! | TACGTTTTTAAAATCACCGG+AGG | - | chr7.1:49084702-49084721 | MS.gene011048:CDS | 35.0% |
| AAGGGTGAGAATGATTTACC+CGG | - | chr7.1:49085202-49085221 | MS.gene011048:intron | 40.0% | |
| AAGTTCAGAACAGATAGGTC+TGG | + | chr7.1:49085169-49085188 | None:intergenic | 40.0% | |
| ACAAGGATTTCCAATGAAGC+AGG | - | chr7.1:49084734-49084753 | MS.gene011048:CDS | 40.0% | |
| AGGATTTCACAAGAGGTCAA+TGG | - | chr7.1:49084559-49084578 | MS.gene011048:intron | 40.0% | |
| AGTTCAGAACAGATAGGTCT+GGG | + | chr7.1:49085168-49085187 | None:intergenic | 40.0% | |
| CAAGGATTTCCAATGAAGCA+GGG | - | chr7.1:49084735-49084754 | MS.gene011048:CDS | 40.0% | |
| CAATCCTTGCTCTCTTTCTT+TGG | + | chr7.1:49086053-49086072 | None:intergenic | 40.0% | |
| GAACCAAATGACACTACTCT+AGG | + | chr7.1:49085621-49085640 | None:intergenic | 40.0% | |
| GACATTTGCCATTATATCGC+TGG | - | chr7.1:49084658-49084677 | MS.gene011048:intron | 40.0% | |
| GATTTCACAAGAGGTCAATG+GGG | - | chr7.1:49084561-49084580 | MS.gene011048:intron | 40.0% | |
| GGATTTCACAAGAGGTCAAT+GGG | - | chr7.1:49084560-49084579 | MS.gene011048:intron | 40.0% | |
| GGCGATTCTCTTCTTCTTAT+CGG | + | chr7.1:49086076-49086095 | None:intergenic | 40.0% | |
| GTTGAAAAGCTTACGGATCT+TGG | + | chr7.1:49085275-49085294 | None:intergenic | 40.0% | |
| TAAGAAGAAGAGAATCGCCA+AGG | - | chr7.1:49086077-49086096 | MS.gene011048:CDS | 40.0% | |
| TCACATCATCATCCTTAGAC+AGG | + | chr7.1:49085297-49085316 | None:intergenic | 40.0% | |
| TGTTAGCACCAGCGATATAA+TGG | + | chr7.1:49084669-49084688 | None:intergenic | 40.0% | |
| TGTTGTAAATGTCCTACGGT+AGG | + | chr7.1:49085335-49085354 | None:intergenic | 40.0% | |
| TTAACAGGCATGCTTCAGTT+TGG | + | chr7.1:49085761-49085780 | None:intergenic | 40.0% | |
| ! | AGACCTATCTGTTCTGAACT+TGG | - | chr7.1:49085168-49085187 | MS.gene011048:intron | 40.0% |
| ! | ATTATATCGCTGGTGCTAAC+AGG | - | chr7.1:49084668-49084687 | MS.gene011048:intron | 40.0% |
| ! | GAATTTGCAGACGAGCATTT+TGG | - | chr7.1:49084530-49084549 | MS.gene011048:intron | 40.0% |
| ! | TGATGGACGGTGACAAATAT+TGG | - | chr7.1:49084331-49084350 | MS.gene011048:intron | 40.0% |
| ! | TGTCTAAGGATGATGATGTG+AGG | - | chr7.1:49085296-49085315 | MS.gene011048:CDS | 40.0% |
| !! | CTCTTTCTTTGGAGTGTAAG+AGG | + | chr7.1:49086042-49086061 | None:intergenic | 40.0% |
| !! | GTACTGGTTATTTGGTTGCA+GGG | - | chr7.1:49085974-49085993 | MS.gene011048:intron | 40.0% |
| !! | GTAGTGTCATTTGGTTCATG+TGG | - | chr7.1:49085624-49085643 | MS.gene011048:intron | 40.0% |
| !!! | TGCTCTGGTTTTGGTTATTC+AGG | - | chr7.1:49085898-49085917 | MS.gene011048:intron | 40.0% |
| AATCGCCAAGGCAAAATCAG+AGG | - | chr7.1:49086089-49086108 | MS.gene011048:intron | 45.0% | |
| AGTATGTCAACACCTACCGT+AGG | - | chr7.1:49085320-49085339 | MS.gene011048:CDS | 45.0% | |
| CAAACTTTCTGATGGCACCT+TGG | + | chr7.1:49085654-49085673 | None:intergenic | 45.0% | |
| CACTCCAAAGAAAGAGAGCA+AGG | - | chr7.1:49086046-49086065 | MS.gene011048:CDS | 45.0% | |
| CATCCTTGGCTTCTCAACAT+CGG | + | chr7.1:49085233-49085252 | None:intergenic | 45.0% | |
| GGACAAGAGGATTTCACAAG+AGG | - | chr7.1:49084552-49084571 | MS.gene011048:intron | 45.0% | |
| TGCTAGACAGTGACACATGT+GGG | - | chr7.1:49084358-49084377 | MS.gene011048:intron | 45.0% | |
| TGTGAAGCAACAGACGAACA+CGG | + | chr7.1:49084776-49084795 | None:intergenic | 45.0% | |
| TTGGTTCATGTGGCTTACCA+AGG | - | chr7.1:49085634-49085653 | MS.gene011048:intron | 45.0% | |
| ! | ATGTTGACTGAGCACCATAC+AGG | + | chr7.1:49085794-49085813 | None:intergenic | 45.0% |
| ! | GTAATCACATGTGCTGGTGA+TGG | - | chr7.1:49084314-49084333 | MS.gene011048:intron | 45.0% |
| ! | TCCTTGTTTGTCACAACCTC+CGG | + | chr7.1:49084721-49084740 | None:intergenic | 45.0% |
| ! | TGTTCGTCTGTTGCTTCACA+GGG | - | chr7.1:49084776-49084795 | MS.gene011048:CDS | 45.0% |
| !! | AAGCTTTTTCTGGCATCCAG+TGG | + | chr7.1:49083960-49083979 | None:intergenic | 45.0% |
| !! | CGTCGATCTCAAGCTTTTTC+TGG | + | chr7.1:49083970-49083989 | None:intergenic | 45.0% |
| !! | GGTACTGGTTATTTGGTTGC+AGG | - | chr7.1:49085973-49085992 | MS.gene011048:intron | 45.0% |
| !! | TTTTTCTGGCATCCAGTGGT+GGG | + | chr7.1:49083956-49083975 | None:intergenic | 45.0% |
| !! | ACAAAATATTAAAATTATTT+AGG | + | chr7.1:49084084-49084103 | None:intergenic | 5.0% |
| !!! | AATTTATTTTTAATAGAAAT+AGG | + | chr7.1:49085012-49085031 | None:intergenic | 5.0% |
| AATGTTGCGAATCCCACCAC+TGG | - | chr7.1:49083941-49083960 | MS.gene011048:CDS | 50.0% | |
| ACACTGACAGGCTACGCAAA+AGG | + | chr7.1:49084807-49084826 | None:intergenic | 50.0% | |
| ACAGGAACTCCTTGCTTTCG+TGG | - | chr7.1:49085085-49085104 | MS.gene011048:intron | 50.0% | |
| ACCAGAAGCTTCTTGCTTCC+AGG | - | chr7.1:49086121-49086140 | MS.gene011048:intron | 50.0% | |
| ACCGGAGGTTGTGACAAACA+AGG | - | chr7.1:49084717-49084736 | MS.gene011048:CDS | 50.0% | |
| ACCTGGAAGCAAGAAGCTTC+TGG | + | chr7.1:49086125-49086144 | None:intergenic | 50.0% | |
| CAGGAACTCCTTGCTTTCGT+GGG | - | chr7.1:49085086-49085105 | MS.gene011048:intron | 50.0% | |
| CTCTTAGGACCTCTCATCCT+TGG | + | chr7.1:49085247-49085266 | None:intergenic | 50.0% | |
| GTGCTAGACAGTGACACATG+TGG | - | chr7.1:49084357-49084376 | MS.gene011048:intron | 50.0% | |
| GTTGAGAAGCCAAGGATGAG+AGG | - | chr7.1:49085235-49085254 | MS.gene011048:intron | 50.0% | |
| TGACCGATGTTGAGAAGCCA+AGG | - | chr7.1:49085227-49085246 | MS.gene011048:intron | 50.0% | |
| TTGGCTTCTCAACATCGGTC+AGG | + | chr7.1:49085228-49085247 | None:intergenic | 50.0% | |
| ! | AGCTGCCTCTGATTTTGCCT+TGG | + | chr7.1:49086097-49086116 | None:intergenic | 50.0% |
| ! | ATCCAGGATTTCCGGTGCTA+AGG | - | chr7.1:49086191-49086210 | MS.gene011048:intron | 50.0% |
| ! | GCTTCTTGCTTCCAGGTTGA+AGG | - | chr7.1:49086128-49086147 | MS.gene011048:intron | 50.0% |
| ! | GTGTTCGTCTGTTGCTTCAC+AGG | - | chr7.1:49084775-49084794 | MS.gene011048:CDS | 50.0% |
| ! | GTTCGTCTGTTGCTTCACAG+GGG | - | chr7.1:49084777-49084796 | MS.gene011048:CDS | 50.0% |
| !! | CTTTTTCTGGCATCCAGTGG+TGG | + | chr7.1:49083957-49083976 | None:intergenic | 50.0% |
| !! | TCACATGTGCTGGTGATGGA+CGG | - | chr7.1:49084318-49084337 | MS.gene011048:intron | 50.0% |
| !!! | GACGAGCATTTTGGGACAAG+AGG | - | chr7.1:49084539-49084558 | MS.gene011048:intron | 50.0% |
| ACTCCTTGCTTTCGTGGGCA+TGG | - | chr7.1:49085091-49085110 | MS.gene011048:intron | 55.0% | |
| CAATGGGGATGCTCTTGGTG+AGG | - | chr7.1:49084576-49084595 | MS.gene011048:intron | 55.0% | |
| CGGATCTTGGACGCTCTCTT+AGG | + | chr7.1:49085262-49085281 | None:intergenic | 55.0% | |
| CTCTCTCTGCTCCTTCAACC+TGG | + | chr7.1:49086142-49086161 | None:intergenic | 55.0% | |
| CTTCCATGCCCACGAAAGCA+AGG | + | chr7.1:49085097-49085116 | None:intergenic | 55.0% | |
| CTTCTCAACATCGGTCAGGC+CGG | + | chr7.1:49085224-49085243 | None:intergenic | 55.0% | |
| CTTGCTTTCGTGGGCATGGA+AGG | - | chr7.1:49085095-49085114 | MS.gene011048:intron | 55.0% | |
| GAGGTCAATGGGGATGCTCT+TGG | - | chr7.1:49084571-49084590 | MS.gene011048:intron | 55.0% | |
| GCTGACAATGCACCCACGAA+CGG | + | chr7.1:49085146-49085165 | None:intergenic | 55.0% | |
| GTCAGGACTCCCTGCTTCAT+TGG | + | chr7.1:49084747-49084766 | None:intergenic | 55.0% | |
| TTCTCAACATCGGTCAGGCC+GGG | + | chr7.1:49085223-49085242 | None:intergenic | 55.0% | |
| ! | GAAGGCGTAATGGAGAACGC+AGG | - | chr7.1:49085113-49085132 | MS.gene011048:intron | 55.0% |
| ! | TGCCTTAGCACCGGAAATCC+TGG | + | chr7.1:49086196-49086215 | None:intergenic | 55.0% |
| AGCAACAGACGAACACGGCC+AGG | + | chr7.1:49084771-49084790 | None:intergenic | 60.0% | |
| CAACAGACGAACACGGCCAG+GGG | + | chr7.1:49084769-49084788 | None:intergenic | 60.0% | |
| GCAACAGACGAACACGGCCA+GGG | + | chr7.1:49084770-49084789 | None:intergenic | 60.0% | |
| GCAGGAGGAAGTCCGTTCGT+GGG | - | chr7.1:49085131-49085150 | MS.gene011048:intron | 60.0% | |
| GGTGACAGCTGCCTTAGCAC+CGG | + | chr7.1:49086205-49086224 | None:intergenic | 60.0% | |
| ! | CGTGGGCATGGAAGGCGTAA+TGG | - | chr7.1:49085103-49085122 | MS.gene011048:intron | 60.0% |
| ! | GGCGTAATGGAGAACGCAGG+AGG | - | chr7.1:49085116-49085135 | MS.gene011048:intron | 60.0% |
| AAGCAGGGAGTCCTGACCCC+TGG | - | chr7.1:49084750-49084769 | MS.gene011048:CDS | 65.0% | |
| CGCAGGAGGAAGTCCGTTCG+TGG | - | chr7.1:49085130-49085149 | MS.gene011048:intron | 65.0% | |
| GACGAACACGGCCAGGGGTC+AGG | + | chr7.1:49084764-49084783 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 49083805 | 49086230 | 49083805 | ID=MS.gene011048 |
| chr7.1 | mRNA | 49083805 | 49086230 | 49083805 | ID=MS.gene011048.t1;Parent=MS.gene011048 |
| chr7.1 | exon | 49086225 | 49086230 | 49086225 | ID=MS.gene011048.t1.exon1;Parent=MS.gene011048.t1 |
| chr7.1 | CDS | 49086225 | 49086230 | 49086225 | ID=cds.MS.gene011048.t1;Parent=MS.gene011048.t1 |
| chr7.1 | exon | 49086033 | 49086097 | 49086033 | ID=MS.gene011048.t1.exon2;Parent=MS.gene011048.t1 |
| chr7.1 | CDS | 49086033 | 49086097 | 49086033 | ID=cds.MS.gene011048.t1;Parent=MS.gene011048.t1 |
| chr7.1 | exon | 49085438 | 49085495 | 49085438 | ID=MS.gene011048.t1.exon3;Parent=MS.gene011048.t1 |
| chr7.1 | CDS | 49085438 | 49085495 | 49085438 | ID=cds.MS.gene011048.t1;Parent=MS.gene011048.t1 |
| chr7.1 | exon | 49085237 | 49085345 | 49085237 | ID=MS.gene011048.t1.exon4;Parent=MS.gene011048.t1 |
| chr7.1 | CDS | 49085237 | 49085345 | 49085237 | ID=cds.MS.gene011048.t1;Parent=MS.gene011048.t1 |
| chr7.1 | exon | 49084674 | 49084946 | 49084674 | ID=MS.gene011048.t1.exon5;Parent=MS.gene011048.t1 |
| chr7.1 | CDS | 49084674 | 49084946 | 49084674 | ID=cds.MS.gene011048.t1;Parent=MS.gene011048.t1 |
| chr7.1 | exon | 49083805 | 49084040 | 49083805 | ID=MS.gene011048.t1.exon6;Parent=MS.gene011048.t1 |
| chr7.1 | CDS | 49083805 | 49084040 | 49083805 | ID=cds.MS.gene011048.t1;Parent=MS.gene011048.t1 |
| Gene Sequence |
| Protein sequence |
