AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051272

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051272.t1 MTR_7g053160 99.597 248 1 0 1 248 1 248 0.0 499
MS.gene051272.t1 MTR_4g088595 96.371 248 9 0 1 248 1 248 4.86e-176 484
MS.gene051272.t1 MTR_2g014030 96.371 248 9 0 1 248 1 248 5.54e-176 484
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051272.t1 AT5G10360 91.532 248 21 0 1 248 1 248 3.04e-166 459
MS.gene051272.t1 AT4G31700 91.200 250 20 1 1 248 1 250 5.13e-158 438
MS.gene051272.t1 AT5G10360 73.387 248 14 1 1 248 1 196 2.64e-121 343
MS.gene051272.t1 AT4G31700 89.894 188 17 1 63 248 1 188 3.47e-108 310

Find 74 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCCTTGCTCTCTTTCTT+TGG 0.173886 7.3:+50933901 None:intergenic
GAATTTGCAGACGAGCATTT+TGG 0.208379 7.3:-50935350 MS.gene051272:intron
GGCGATTCTCTTCTTCTTAT+CGG 0.223662 7.3:+50933878 None:intergenic
ACCAGAAGCTTCTTGCTTCC+AGG 0.274677 7.3:-50933830 MS.gene051272:CDS
TTATTTCGTTGCAGGGAAAA+AGG 0.317717 7.3:-50933970 MS.gene051272:intron
TGGTACTAACAGGAATTTAA+AGG 0.323051 7.3:-50935202 MS.gene051272:intron
AGTAACTAGTCTTTGTATCT+TGG 0.331940 7.3:+50933935 None:intergenic
CGGATCTTGGACGCTCTCTT+AGG 0.339335 7.3:+50934615 None:intergenic
GTTGAAAAGCTTACGGATCT+TGG 0.369922 7.3:+50934602 None:intergenic
CTCTTTCTTTGGAGTGTAAG+AGG 0.370544 7.3:+50933912 None:intergenic
GTTAGGACTCCCTGCTTCAT+TGG 0.374604 7.3:+50935136 None:intergenic
GTGTTCGTCTGTTGCTTCAC+AGG 0.378377 7.3:-50935105 MS.gene051272:CDS
ACCTGGAAGCAAGAAGCTTC+TGG 0.379692 7.3:+50933829 None:intergenic
AGACCTTTCTGTTCTGAACT+TGG 0.382910 7.3:-50934706 MS.gene051272:CDS
GTAACTAGTCTTTGTATCTT+GGG 0.392706 7.3:+50933936 None:intergenic
CTCTTAGGACCTCTCATCCT+TGG 0.398073 7.3:+50934630 None:intergenic
GGATTTCACAAGAGGTCAAT+GGG 0.417305 7.3:-50935320 MS.gene051272:CDS
TGCCTTAGCACTGGAAATCC+TGG 0.423380 7.3:+50933758 None:intergenic
GCTTCTTGCTTCCAGGTTGA+AGG 0.423629 7.3:-50933823 MS.gene051272:CDS
CTTGCTTTCGTGGGCATGGA+AGG 0.423949 7.3:-50934779 MS.gene051272:CDS
TCCTTGTTTGTCACAACCTC+CGG 0.446389 7.3:+50935162 None:intergenic
AAGTTCAGAACAGAAAGGTC+TGG 0.453108 7.3:+50934708 None:intergenic
CTCTCTCTGCTCCTTCAACC+TGG 0.453539 7.3:+50933812 None:intergenic
TGTTCGTCTGTTGCTTCACA+GGG 0.455437 7.3:-50935104 MS.gene051272:CDS
GACGAACACGGCCAGGGGTT+AGG 0.458847 7.3:+50935119 None:intergenic
AGCAACAGACGAACACGGCC+AGG 0.465092 7.3:+50935112 None:intergenic
ACTCCTTGCTTTCGTGGGCA+TGG 0.465842 7.3:-50934783 MS.gene051272:CDS
CTTCTCAACATCGGTCAGGC+CGG 0.479719 7.3:+50934653 None:intergenic
ACAAGGATTTCCAATGAAGC+AGG 0.479949 7.3:-50935146 MS.gene051272:CDS
GAACTTGGTAATTGTGAAGA+AGG 0.488543 7.3:-50934691 MS.gene051272:CDS
TAGACAGGTTGAAAAGCTTA+CGG 0.491080 7.3:+50934595 None:intergenic
ACAGGAACTCCTTGCTTTCG+TGG 0.493316 7.3:-50934789 MS.gene051272:intron
CGCAGGAGGAAGTCCGTTCG+TGG 0.499221 7.3:-50934744 MS.gene051272:CDS
CGTGGGCATGGAAGGCGTAA+TGG 0.499837 7.3:-50934771 MS.gene051272:CDS
TTCTCAACATCGGTCAGGCC+GGG 0.500903 7.3:+50934654 None:intergenic
GAGGTCAATGGGGATGCTCT+TGG 0.504931 7.3:-50935309 MS.gene051272:CDS
TTGGCTTCTCAACATCGGTC+AGG 0.507183 7.3:+50934649 None:intergenic
AGGATTTCACAAGAGGTCAA+TGG 0.507253 7.3:-50935321 MS.gene051272:CDS
ATCCAGGATTTCCAGTGCTA+AGG 0.509483 7.3:-50933760 MS.gene051272:CDS
TCACATCATCATCCTTAGAC+AGG 0.513297 7.3:+50934580 None:intergenic
AGTTCAGAACAGAAAGGTCT+GGG 0.537667 7.3:+50934709 None:intergenic
TGTTGTAAATGTCCTACGGT+AGG 0.539789 7.3:+50934542 None:intergenic
AGGACATTTACAACAAAAGC+TGG 0.541932 7.3:-50934534 MS.gene051272:intron
GCTGACAATGCACCCACGAA+CGG 0.547404 7.3:+50934731 None:intergenic
GCAACAGACGAACACGGCCA+GGG 0.547657 7.3:+50935113 None:intergenic
CAGGAACTCCTTGCTTTCGT+GGG 0.551855 7.3:-50934788 MS.gene051272:CDS
GGCGTAATGGAGAGCGCAGG+AGG 0.556424 7.3:-50934758 MS.gene051272:CDS
CACTCCAAAGAAAGAGAGCA+AGG 0.560832 7.3:-50933905 MS.gene051272:CDS
AATGTTGCGAATCCCACCAC+TGG 0.561300 7.3:-50935939 MS.gene051272:CDS
TAAGGCAGCTGTCACCGCCT+AGG 0.568165 7.3:-50933742 None:intergenic
CTTCCATGCCCACGAAAGCA+AGG 0.568809 7.3:+50934780 None:intergenic
GGACAAGAGGATTTCACAAG+AGG 0.571370 7.3:-50935328 MS.gene051272:CDS
AAGCAGGGAGTCCTAACCCC+TGG 0.578908 7.3:-50935130 MS.gene051272:CDS
TGACCGATGTTGAGAAGCCA+AGG 0.592857 7.3:-50934647 MS.gene051272:CDS
GGTGACAGCTGCCTTAGCAC+TGG 0.594937 7.3:+50933749 None:intergenic
CATCCTTGGCTTCTCAACAT+CGG 0.602359 7.3:+50934644 None:intergenic
GTTGAGAAGCCAAGGATGAG+AGG 0.608216 7.3:-50934639 MS.gene051272:CDS
AATCGCCAAGGCAAAATCAG+AGG 0.625414 7.3:-50933862 MS.gene051272:CDS
GCAGGAGGAAGTCCGTTCGT+GGG 0.626781 7.3:-50934743 MS.gene051272:CDS
CAAGGATTTCCAATGAAGCA+GGG 0.632810 7.3:-50935145 MS.gene051272:CDS
GAAGGCGTAATGGAGAGCGC+AGG 0.640543 7.3:-50934761 MS.gene051272:CDS
CAATGGGGATGCTCTTGGTG+AGG 0.642872 7.3:-50935304 MS.gene051272:intron
AACTTGGTAATTGTGAAGAA+GGG 0.654902 7.3:-50934690 MS.gene051272:CDS
TGTGAAGCAACAGACGAACA+CGG 0.657981 7.3:+50935107 None:intergenic
CAACAGACGAACACGGCCAG+GGG 0.659590 7.3:+50935114 None:intergenic
TAAGAAGAAGAGAATCGCCA+AGG 0.666176 7.3:-50933874 MS.gene051272:CDS
AAGGGTGAGAATGATTTACC+CGG 0.666590 7.3:-50934672 MS.gene051272:CDS
TTACCAAGTTCAGAACAGAA+AGG 0.669660 7.3:+50934703 None:intergenic
ACCGGAGGTTGTGACAAACA+AGG 0.687549 7.3:-50935163 MS.gene051272:CDS
AGTATGTCAACACCTACCGT+AGG 0.700274 7.3:-50934554 MS.gene051272:CDS
GTTCGTCTGTTGCTTCACAG+GGG 0.715022 7.3:-50935103 MS.gene051272:intron
GATTTCACAAGAGGTCAATG+GGG 0.738312 7.3:-50935319 MS.gene051272:CDS
TGTCTAAGGATGATGATGTG+AGG 0.746514 7.3:-50934578 MS.gene051272:CDS
TGGTATGACAGCAACCTAGG+CGG 0.774656 7.3:+50933728 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAGAGAATTA+TGG + chr7.3:50933769-50933788 None:intergenic 10.0%
!! CATTCTATTAAATATAAATA+AGG + chr7.3:50935471-50935490 None:intergenic 10.0%
!! TTAAAATAAACAAGTAAAAT+GGG + chr7.3:50933957-50933976 None:intergenic 10.0%
!!! ATTTTGATATATATTCTAAA+TGG - chr7.3:50935820-50935839 MS.gene051272:intron 10.0%
!!! TACAAATTTAAAATCTTTTT+GGG + chr7.3:50934046-50934065 None:intergenic 10.0%
!!! TTTAAAATAAACAAGTAAAA+TGG + chr7.3:50933958-50933977 None:intergenic 10.0%
!! ATAACAATTTATCATCAAAT+AGG + chr7.3:50934845-50934864 None:intergenic 15.0%
!!! AGATTGATATTTTAATAAAC+AGG + chr7.3:50935359-50935378 None:intergenic 15.0%
!!! ATTTTTAATAGAAATAGGTA+GGG + chr7.3:50934952-50934971 None:intergenic 15.0%
!!! GTACAAATTTAAAATCTTTT+TGG + chr7.3:50934047-50934066 None:intergenic 15.0%
!!! TATTTTTAATAGAAATAGGT+AGG + chr7.3:50934953-50934972 None:intergenic 15.0%
!!! TTGTTTTTTGTGATATATAT+TGG - chr7.3:50934372-50934391 MS.gene051272:intron 15.0%
!! AATAGAAAAATTACAAGGAT+AGG + chr7.3:50935319-50935338 None:intergenic 20.0%
!! ATATATATTCTAAATGGTAC+TGG - chr7.3:50935826-50935845 MS.gene051272:intron 20.0%
!! ATTGATTAGTATAAGAGTTA+AGG - chr7.3:50934079-50934098 MS.gene051272:intron 20.0%
!! GATGATATATTAATATTGGT+TGG - chr7.3:50934404-50934423 MS.gene051272:intron 20.0%
!! GTGTGATGATATATTAATAT+TGG - chr7.3:50934400-50934419 MS.gene051272:intron 20.0%
!! TTAATATACTATATCCTGTA+TGG - chr7.3:50935656-50935675 MS.gene051272:intron 20.0%
!! TTGATTAGTATAAGAGTTAA+GGG - chr7.3:50934080-50934099 MS.gene051272:intron 20.0%
!! TTTAAACAACTTAGATTGTT+TGG - chr7.3:50934135-50934154 MS.gene051272:intron 20.0%
!!! TACTATTATATCTTTTGAGT+CGG - chr7.3:50934913-50934932 MS.gene051272:intron 20.0%
! ACAGGATATAGTATATTAAC+AGG + chr7.3:50935655-50935674 None:intergenic 25.0%
! ATCAGTCCAAATTATTTCAA+TGG + chr7.3:50935792-50935811 None:intergenic 25.0%
! CGACTAATAGAAAAATTACA+AGG + chr7.3:50935324-50935343 None:intergenic 25.0%
!! TATTTCTATGAATCTGAACA+TGG + chr7.3:50934436-50934455 None:intergenic 25.0%
!!! ACTTATAGACTCTTTTGAAA+TGG - chr7.3:50935590-50935609 MS.gene051272:intron 25.0%
!!! ATTGATTTTAGTCAATACTC+TGG - chr7.3:50935751-50935770 MS.gene051272:intron 25.0%
!!! CTAAAATCAATTTGTTACAC+AGG + chr7.3:50935742-50935761 None:intergenic 25.0%
AAAGAGAATTATGGTTACAG+TGG + chr7.3:50933760-50933779 None:intergenic 30.0%
ATAATGTTTGATGTCAGTGT+AGG + chr7.3:50934173-50934192 None:intergenic 30.0%
ATAGCATATATATCTACTCG+TGG + chr7.3:50935704-50935723 None:intergenic 30.0%
ATCCTAAAAATTACACTGAC+AGG + chr7.3:50934758-50934777 None:intergenic 30.0%
TCACATAACTCATAACAGAA+GGG + chr7.3:50935404-50935423 None:intergenic 30.0%
TGGTACTAACAGGAATTTAA+AGG - chr7.3:50934617-50934636 MS.gene051272:CDS 30.0%
TGGTGTCTATCTAACATTAA+GGG + chr7.3:50935620-50935639 None:intergenic 30.0%
TTCACATAACTCATAACAGA+AGG + chr7.3:50935405-50935424 None:intergenic 30.0%
TTCAGGCCATTGAAATAATT+TGG - chr7.3:50935783-50935802 MS.gene051272:intron 30.0%
! AACTTGGTAATTGTGAAGAA+GGG - chr7.3:50935129-50935148 MS.gene051272:CDS 30.0%
! AGTATATTGTTGACTGTAGA+TGG - chr7.3:50934794-50934813 MS.gene051272:intron 30.0%
! TTGGTGTCTATCTAACATTA+AGG + chr7.3:50935621-50935640 None:intergenic 30.0%
! TTTTCATTGTTCACATGAAC+AGG - chr7.3:50935012-50935031 MS.gene051272:intron 30.0%
! TTTTCTATTAGTCGTGTCAT+TGG - chr7.3:50935330-50935349 MS.gene051272:CDS 30.0%
!! AGTAACTAGTCTTTGTATCT+TGG + chr7.3:50935887-50935906 None:intergenic 30.0%
!! CTTTTGTTGTAAATGTCCTA+CGG + chr7.3:50935284-50935303 None:intergenic 30.0%
!! GTAACTAGTCTTTGTATCTT+GGG + chr7.3:50935886-50935905 None:intergenic 30.0%
!! TTTAGTCAATACTCTGGTTT+TGG - chr7.3:50935757-50935776 MS.gene051272:intron 30.0%
!!! GGATACGTTTTTAAAATCAC+CGG - chr7.3:50934638-50934657 MS.gene051272:CDS 30.0%
!!! TGTTGATTGGTTTTAGTACT+TGG - chr7.3:50935562-50935581 MS.gene051272:intron 30.0%
!!! TGTTTTGAGAAAGTGAAATG+TGG - chr7.3:50934109-50934128 MS.gene051272:intron 30.0%
!!! TTTGTGCTAGTTTTGTTGAT+TGG - chr7.3:50935549-50935568 MS.gene051272:intron 30.0%
AACTAGCACAAACTTTCTGA+TGG + chr7.3:50935541-50935560 None:intergenic 35.0%
AGGACATTTACAACAAAAGC+TGG - chr7.3:50935285-50935304 MS.gene051272:intron 35.0%
ATTATATCGCTGGTACTAAC+AGG - chr7.3:50934607-50934626 MS.gene051272:CDS 35.0%
CACATAACTCATAACAGAAG+GGG + chr7.3:50935403-50935422 None:intergenic 35.0%
GTTTAGCAAAAAAGAGATCC+AGG - chr7.3:50936043-50936062 MS.gene051272:intron 35.0%
TCAACTTAACGTGTTAGTGT+CGG + chr7.3:50934197-50934216 None:intergenic 35.0%
TGTTAGTACCAGCGATATAA+TGG + chr7.3:50934608-50934627 None:intergenic 35.0%
TTACCAAGTTCAGAACAGAA+AGG + chr7.3:50935119-50935138 None:intergenic 35.0%
TTATTTCGTTGCAGGGAAAA+AGG - chr7.3:50935849-50935868 MS.gene051272:intron 35.0%
TTGATTGTAATCACATGTGC+TGG - chr7.3:50934247-50934266 MS.gene051272:intron 35.0%
! AATTTGCAGACGAGCATTTT+GGG - chr7.3:50934470-50934489 MS.gene051272:intron 35.0%
! AGCCTGTCAGTGTAATTTTT+AGG - chr7.3:50934753-50934772 MS.gene051272:CDS 35.0%
! GAACTTGGTAATTGTGAAGA+AGG - chr7.3:50935128-50935147 MS.gene051272:CDS 35.0%
! TAAGCTTTTCAACCTGTCTA+AGG - chr7.3:50935227-50935246 MS.gene051272:intron 35.0%
! TAGACAGGTTGAAAAGCTTA+CGG + chr7.3:50935227-50935246 None:intergenic 35.0%
! TTTCCTAGAGTTGTGTCATT+TGG - chr7.3:50935494-50935513 MS.gene051272:intron 35.0%
!!! TACGTTTTTAAAATCACCGG+AGG - chr7.3:50934641-50934660 MS.gene051272:CDS 35.0%
!!! TACTCTGGTTTTGGTTATTC+AGG - chr7.3:50935766-50935785 MS.gene051272:intron 35.0%
AAGGGTGAGAATGATTTACC+CGG - chr7.3:50935147-50935166 MS.gene051272:CDS 40.0%
AAGTTCAGAACAGAAAGGTC+TGG + chr7.3:50935114-50935133 None:intergenic 40.0%
ACAAGGATTTCCAATGAAGC+AGG - chr7.3:50934673-50934692 MS.gene051272:CDS 40.0%
AGGATTTCACAAGAGGTCAA+TGG - chr7.3:50934498-50934517 MS.gene051272:intron 40.0%
AGTTCAGAACAGAAAGGTCT+GGG + chr7.3:50935113-50935132 None:intergenic 40.0%
CAAGGATTTCCAATGAAGCA+GGG - chr7.3:50934674-50934693 MS.gene051272:CDS 40.0%
CAATCCTTGCTCTCTTTCTT+TGG + chr7.3:50935921-50935940 None:intergenic 40.0%
GAACCAAATGACACAACTCT+AGG + chr7.3:50935500-50935519 None:intergenic 40.0%
GACATTTGCCATTATATCGC+TGG - chr7.3:50934597-50934616 MS.gene051272:CDS 40.0%
GATTTCACAAGAGGTCAATG+GGG - chr7.3:50934500-50934519 MS.gene051272:intron 40.0%
GGATTTCACAAGAGGTCAAT+GGG - chr7.3:50934499-50934518 MS.gene051272:intron 40.0%
GGCGATTCTCTTCTTCTTAT+CGG + chr7.3:50935944-50935963 None:intergenic 40.0%
GTTGAAAAGCTTACGGATCT+TGG + chr7.3:50935220-50935239 None:intergenic 40.0%
TAAGAAGAAGAGAATCGCCA+AGG - chr7.3:50935945-50935964 MS.gene051272:CDS 40.0%
TCACATCATCATCCTTAGAC+AGG + chr7.3:50935242-50935261 None:intergenic 40.0%
TGCTAGATAGTGACACATGA+GGG - chr7.3:50934297-50934316 MS.gene051272:intron 40.0%
TGTTGTAAATGTCCTACGGT+AGG + chr7.3:50935280-50935299 None:intergenic 40.0%
TTAACAGGCATGCTTCAGTT+TGG + chr7.3:50935640-50935659 None:intergenic 40.0%
! AGACCTTTCTGTTCTGAACT+TGG - chr7.3:50935113-50935132 MS.gene051272:CDS 40.0%
! GAATTTGCAGACGAGCATTT+TGG - chr7.3:50934469-50934488 MS.gene051272:intron 40.0%
! TGATGGACGGTGACAAATAT+TGG - chr7.3:50934270-50934289 MS.gene051272:intron 40.0%
! TGTCTAAGGATGATGATGTG+AGG - chr7.3:50935241-50935260 MS.gene051272:intron 40.0%
!! CTCTTTCTTTGGAGTGTAAG+AGG + chr7.3:50935910-50935929 None:intergenic 40.0%
!! GTACTGGTTATTTCGTTGCA+GGG - chr7.3:50935842-50935861 MS.gene051272:intron 40.0%
!! GTTGTGTCATTTGGTTCATG+TGG - chr7.3:50935503-50935522 MS.gene051272:intron 40.0%
AATCGCCAAGGCAAAATCAG+AGG - chr7.3:50935957-50935976 MS.gene051272:intron 45.0%
ACACTGACAGGCTACACAAA+AGG + chr7.3:50934746-50934765 None:intergenic 45.0%
AGATAGTGACACATGAGGGA+CGG - chr7.3:50934301-50934320 MS.gene051272:intron 45.0%
AGTATGTCAACACCTACCGT+AGG - chr7.3:50935265-50935284 MS.gene051272:intron 45.0%
ATCCAGGATTTCCAGTGCTA+AGG - chr7.3:50936059-50936078 MS.gene051272:intron 45.0%
CAAACTTTCTGATGGCACCT+TGG + chr7.3:50935533-50935552 None:intergenic 45.0%
CACTCCAAAGAAAGAGAGCA+AGG - chr7.3:50935914-50935933 MS.gene051272:CDS 45.0%
CATCCTTGGCTTCTCAACAT+CGG + chr7.3:50935178-50935197 None:intergenic 45.0%
CTCGTCTGCAAATTCAAGTC+AGG + chr7.3:50934464-50934483 None:intergenic 45.0%
GGACAAGAGGATTTCACAAG+AGG - chr7.3:50934491-50934510 MS.gene051272:intron 45.0%
GTGCTAGATAGTGACACATG+AGG - chr7.3:50934296-50934315 MS.gene051272:intron 45.0%
TGTGAAGCAACAGACGAACA+CGG + chr7.3:50934715-50934734 None:intergenic 45.0%
TTGGTTCATGTGGCTTACCA+AGG - chr7.3:50935513-50935532 MS.gene051272:intron 45.0%
! ATGTTGACTGAGCACCATAC+AGG + chr7.3:50935673-50935692 None:intergenic 45.0%
! GTAATCACATGTGCTGGTGA+TGG - chr7.3:50934253-50934272 MS.gene051272:intron 45.0%
! TCCTTGTTTGTCACAACCTC+CGG + chr7.3:50934660-50934679 None:intergenic 45.0%
! TGTTCGTCTGTTGCTTCACA+GGG - chr7.3:50934715-50934734 MS.gene051272:CDS 45.0%
!! AAGCTTTTTCTGGCATCCAG+TGG + chr7.3:50933899-50933918 None:intergenic 45.0%
!! CGTCGATCTCAAGCTTTTTC+TGG + chr7.3:50933909-50933928 None:intergenic 45.0%
!! GGTACTGGTTATTTCGTTGC+AGG - chr7.3:50935841-50935860 MS.gene051272:intron 45.0%
!! TTTTTCTGGCATCCAGTGGT+GGG + chr7.3:50933895-50933914 None:intergenic 45.0%
!! ACAAAATATTAAAATTATTT+AGG + chr7.3:50934023-50934042 None:intergenic 5.0%
!!! AATTTATTTTTAATAGAAAT+AGG + chr7.3:50934957-50934976 None:intergenic 5.0%
AATGTTGCGAATCCCACCAC+TGG - chr7.3:50933880-50933899 MS.gene051272:CDS 50.0%
ACAGGAACTCCTTGCTTTCG+TGG - chr7.3:50935030-50935049 MS.gene051272:intron 50.0%
ACCAGAAGCTTCTTGCTTCC+AGG - chr7.3:50935989-50936008 MS.gene051272:intron 50.0%
ACCGGAGGTTGTGACAAACA+AGG - chr7.3:50934656-50934675 MS.gene051272:CDS 50.0%
ACCTGGAAGCAAGAAGCTTC+TGG + chr7.3:50935993-50936012 None:intergenic 50.0%
CAGGAACTCCTTGCTTTCGT+GGG - chr7.3:50935031-50935050 MS.gene051272:intron 50.0%
CTCTTAGGACCTCTCATCCT+TGG + chr7.3:50935192-50935211 None:intergenic 50.0%
GTTAGGACTCCCTGCTTCAT+TGG + chr7.3:50934686-50934705 None:intergenic 50.0%
GTTGAGAAGCCAAGGATGAG+AGG - chr7.3:50935180-50935199 MS.gene051272:CDS 50.0%
TGACCGATGTTGAGAAGCCA+AGG - chr7.3:50935172-50935191 MS.gene051272:CDS 50.0%
TTGGCTTCTCAACATCGGTC+AGG + chr7.3:50935173-50935192 None:intergenic 50.0%
! AGCTGCCTCTGATTTTGCCT+TGG + chr7.3:50935965-50935984 None:intergenic 50.0%
! GCTTCTTGCTTCCAGGTTGA+AGG - chr7.3:50935996-50936015 MS.gene051272:intron 50.0%
! GTGTTCGTCTGTTGCTTCAC+AGG - chr7.3:50934714-50934733 MS.gene051272:CDS 50.0%
! GTTCGTCTGTTGCTTCACAG+GGG - chr7.3:50934716-50934735 MS.gene051272:CDS 50.0%
! TGCCTTAGCACTGGAAATCC+TGG + chr7.3:50936064-50936083 None:intergenic 50.0%
!! CTTTTTCTGGCATCCAGTGG+TGG + chr7.3:50933896-50933915 None:intergenic 50.0%
!! TCACATGTGCTGGTGATGGA+CGG - chr7.3:50934257-50934276 MS.gene051272:intron 50.0%
!!! GACGAGCATTTTGGGACAAG+AGG - chr7.3:50934478-50934497 MS.gene051272:intron 50.0%
ACTCCTTGCTTTCGTGGGCA+TGG - chr7.3:50935036-50935055 MS.gene051272:intron 55.0%
CAATGGGGATGCTCTTGGTG+AGG - chr7.3:50934515-50934534 MS.gene051272:intron 55.0%
CGGATCTTGGACGCTCTCTT+AGG + chr7.3:50935207-50935226 None:intergenic 55.0%
CTCTCTCTGCTCCTTCAACC+TGG + chr7.3:50936010-50936029 None:intergenic 55.0%
CTTCCATGCCCACGAAAGCA+AGG + chr7.3:50935042-50935061 None:intergenic 55.0%
CTTCTCAACATCGGTCAGGC+CGG + chr7.3:50935169-50935188 None:intergenic 55.0%
CTTGCTTTCGTGGGCATGGA+AGG - chr7.3:50935040-50935059 MS.gene051272:intron 55.0%
GAGGTCAATGGGGATGCTCT+TGG - chr7.3:50934510-50934529 MS.gene051272:intron 55.0%
GCTGACAATGCACCCACGAA+CGG + chr7.3:50935091-50935110 None:intergenic 55.0%
TTCTCAACATCGGTCAGGCC+GGG + chr7.3:50935168-50935187 None:intergenic 55.0%
AAGCAGGGAGTCCTAACCCC+TGG - chr7.3:50934689-50934708 MS.gene051272:CDS 60.0%
AGCAACAGACGAACACGGCC+AGG + chr7.3:50934710-50934729 None:intergenic 60.0%
CAACAGACGAACACGGCCAG+GGG + chr7.3:50934708-50934727 None:intergenic 60.0%
GCAACAGACGAACACGGCCA+GGG + chr7.3:50934709-50934728 None:intergenic 60.0%
GCAGGAGGAAGTCCGTTCGT+GGG - chr7.3:50935076-50935095 MS.gene051272:intron 60.0%
GGTGACAGCTGCCTTAGCAC+TGG + chr7.3:50936073-50936092 None:intergenic 60.0%
! CGTGGGCATGGAAGGCGTAA+TGG - chr7.3:50935048-50935067 MS.gene051272:intron 60.0%
! GAAGGCGTAATGGAGAGCGC+AGG - chr7.3:50935058-50935077 MS.gene051272:intron 60.0%
CGCAGGAGGAAGTCCGTTCG+TGG - chr7.3:50935075-50935094 MS.gene051272:intron 65.0%
GACGAACACGGCCAGGGGTT+AGG + chr7.3:50934703-50934722 None:intergenic 65.0%
! GGCGTAATGGAGAGCGCAGG+AGG - chr7.3:50935061-50935080 MS.gene051272:intron 65.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 50933743 50936098 50933743 ID=MS.gene051272
chr7.3 mRNA 50933743 50936098 50933743 ID=MS.gene051272.t1;Parent=MS.gene051272
chr7.3 exon 50936093 50936098 50936093 ID=MS.gene051272.t1.exon1;Parent=MS.gene051272.t1
chr7.3 CDS 50936093 50936098 50936093 ID=cds.MS.gene051272.t1;Parent=MS.gene051272.t1
chr7.3 exon 50935900 50935964 50935900 ID=MS.gene051272.t1.exon2;Parent=MS.gene051272.t1
chr7.3 CDS 50935900 50935964 50935900 ID=cds.MS.gene051272.t1;Parent=MS.gene051272.t1
chr7.3 exon 50935305 50935362 50935305 ID=MS.gene051272.t1.exon3;Parent=MS.gene051272.t1
chr7.3 CDS 50935305 50935362 50935305 ID=cds.MS.gene051272.t1;Parent=MS.gene051272.t1
chr7.3 exon 50935104 50935212 50935104 ID=MS.gene051272.t1.exon4;Parent=MS.gene051272.t1
chr7.3 CDS 50935104 50935212 50935104 ID=cds.MS.gene051272.t1;Parent=MS.gene051272.t1
chr7.3 exon 50934535 50934807 50934535 ID=MS.gene051272.t1.exon5;Parent=MS.gene051272.t1
chr7.3 CDS 50934535 50934807 50934535 ID=cds.MS.gene051272.t1;Parent=MS.gene051272.t1
chr7.3 exon 50933743 50933978 50933743 ID=MS.gene051272.t1.exon6;Parent=MS.gene051272.t1
chr7.3 CDS 50933743 50933978 50933743 ID=cds.MS.gene051272.t1;Parent=MS.gene051272.t1
Gene Sequence

>MS.gene051272

ATGAAGGTTCGCTTCCACTGTAACCATAATTCTCTTTTTTTTTTTTTTTGTACTCGCTTATTTGCGATTTCTTTTTCTTTTTTTCTGTGTTCGTTTCTGAATTTTTGTTTACAACTATTTTGTGATTTTTTCAGTTCAATGTTGCGAATCCCACCACTGGATGCCAGAAAAAGCTTGAGATCGACGATGATCAGAAACTGTAATTTCTTCACCCATTTTACTTGTTTATTTTAAATCATTGTTCATTTTCACTGCATTTTCGTCGAATTTTGTTGAACCTAAATAATTTTAATATTTTGTCCCAAAAAGATTTTAAATTTGTACTTTAACATCATAATTGATTAGTATAAGAGTTAAGGGTGTGCTTGTTTTGAGAAAGTGAAATGTGGAAATTTAAACAACTTAGATTGTTTGGATTTACTAAGCACCTACACTGACATCAAACATTATACCGACACTAACACGTTAAGTTGATATCGATAATAATTCTAGAAAATGAATTAATTGATTGTAATCACATGTGCTGGTGATGGACGGTGACAAATATTGGATAGTGCTAGATAGTGACACATGAGGGACGGTGCTACAGAGCTGAATAGCAAGTTGAATCTTACAAACACATTACAAAATTGTTTTTTGTGATATATATTGGTTATTGTGTGATGATATATTAATATTGGTTGGATTGCACCATGTTCAGATTCATAGAAATAATATTCCTGACTTGAATTTGCAGACGAGCATTTTGGGACAAGAGGATTTCACAAGAGGTCAATGGGGATGCTCTTGGTGAGGTATGCTCGTTAGCTCGAAACTTCAAATGTCTGCTTTGAATTTGTGCAGAATATATGATTGACATTTGCCATTATATCGCTGGTACTAACAGGAATTTAAAGGATACGTTTTTAAAATCACCGGAGGTTGTGACAAACAAGGATTTCCAATGAAGCAGGGAGTCCTAACCCCTGGCCGTGTTCGTCTGTTGCTTCACAGGGGTAAGCCTTTTGTGTAGCCTGTCAGTGTAATTTTTAGGATTGCTTAAATTTTTAACAGTATATTGTTGACTGTAGATGGTGTAAATTATTATGTACATAGATTGCCTATTTGATGATAAATTGTTATTATTATTATTACTACTACTACTACTACTACTACTACTACTACTACTACTACTATTATATCTTTTGAGTCGGTTTCAATTTTATACCCTACCTATTTCTATTAAAAATAAATTCAGTGTTATTTATATGTTGTCTTTGTCTTGTGTGTTTTTCATTGTTCACATGAACAGGAACTCCTTGCTTTCGTGGGCATGGAAGGCGTAATGGAGAGCGCAGGAGGAAGTCCGTTCGTGGGTGCATTGTCAGCCCAGACCTTTCTGTTCTGAACTTGGTAATTGTGAAGAAGGGTGAGAATGATTTACCCGGCCTGACCGATGTTGAGAAGCCAAGGATGAGAGGTCCTAAGAGAGCGTCCAAGATCCGTAAGCTTTTCAACCTGTCTAAGGATGATGATGTGAGGAAGTATGTCAACACCTACCGTAGGACATTTACAACAAAAGCTGGTAAAATCTCCTATCCTTGTAATTTTTCTATTAGTCGTGTCATTGGCTGCCTGTTTATTAAAATATCAATCTGTAGATGTGATATGATTTTTTCCCCTTCTGTTATGAGTTATGTGAACAATTTGTTTTTTACTTTATTGATTCATTTATTCATTAGAAGACCTTATTTATATTTAATAGAATGTCTTTTCCTAGAGTTGTGTCATTTGGTTCATGTGGCTTACCAAGGTGCCATCAGAAAGTTTGTGCTAGTTTTGTTGATTGGTTTTAGTACTTGGAAAGTACTTATAGACTCTTTTGAAATGGTGCACCCTTAATGTTAGATAGACACCAAACTGAAGCATGCCTGTTAATATACTATATCCTGTATGGTGCTCAGTCAACATAATGAAAACCACGAGTAGATATATATGCTATCGTAATCTGAAAGATCCTGTGTAACAAATTGATTTTAGTCAATACTCTGGTTTTGGTTATTCAGGCCATTGAAATAATTTGGACTGATACAGTCATATTTTGATATATATTCTAAATGGTACTGGTTATTTCGTTGCAGGGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTAGTTACTCCTCTTACACTCCAAAGAAAGAGAGCAAGGATTGCCGATAAGAAGAAGAGAATCGCCAAGGCAAAATCAGAGGCAGCTGAGTACCAGAAGCTTCTTGCTTCCAGGTTGAAGGAGCAGAGAGAGCGTCGCAGTGAAAGTTTAGCAAAAAAGAGATCCAGGATTTCCAGTGCTAAGGCAGCTGTCACCGCCTAG
Protein sequence

>MS.gene051272.t1

MKFNVANPTTGCQKKLEIDDDQKLRAFWDKRISQEVNGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKAGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKKRSRISSAKAAVTA