Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023037.t1 | XP_013448504.1 | 99.6 | 248 | 1 | 0 | 1 | 248 | 1 | 248 | 2.20E-130 | 474.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023037.t1 | P51430 | 91.5 | 248 | 21 | 0 | 1 | 248 | 1 | 248 | 5.5e-122 | 438.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023037.t1 | A0A072TZB9 | 99.6 | 248 | 1 | 0 | 1 | 248 | 1 | 248 | 1.6e-130 | 474.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene002470 | MS.gene023037 | PPI |
| MS.gene31991 | MS.gene023037 | PPI |
| MS.gene051272 | MS.gene023037 | PPI |
| MS.gene023037 | MS.gene09046 | PPI |
| MS.gene09187 | MS.gene023037 | PPI |
| MS.gene33828 | MS.gene023037 | PPI |
| MS.gene01066 | MS.gene023037 | PPI |
| MS.gene09188 | MS.gene023037 | PPI |
| MS.gene023037 | MS.gene26343 | PPI |
| MS.gene39485 | MS.gene023037 | PPI |
| MS.gene01449 | MS.gene023037 | PPI |
| MS.gene08260 | MS.gene023037 | PPI |
| MS.gene08259 | MS.gene023037 | PPI |
| MS.gene027347 | MS.gene023037 | PPI |
| MS.gene023037 | MS.gene011048 | PPI |
| MS.gene023381 | MS.gene023037 | PPI |
| MS.gene26343 | MS.gene023037 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023037.t1 | MTR_7g053160 | 99.597 | 248 | 1 | 0 | 1 | 248 | 1 | 248 | 0.0 | 499 |
| MS.gene023037.t1 | MTR_4g088595 | 96.371 | 248 | 9 | 0 | 1 | 248 | 1 | 248 | 4.86e-176 | 484 |
| MS.gene023037.t1 | MTR_2g014030 | 96.371 | 248 | 9 | 0 | 1 | 248 | 1 | 248 | 5.54e-176 | 484 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023037.t1 | AT5G10360 | 91.532 | 248 | 21 | 0 | 1 | 248 | 1 | 248 | 3.04e-166 | 459 |
| MS.gene023037.t1 | AT4G31700 | 91.200 | 250 | 20 | 1 | 1 | 248 | 1 | 250 | 5.13e-158 | 438 |
| MS.gene023037.t1 | AT5G10360 | 73.387 | 248 | 14 | 1 | 1 | 248 | 1 | 196 | 2.64e-121 | 343 |
| MS.gene023037.t1 | AT4G31700 | 89.894 | 188 | 17 | 1 | 63 | 248 | 1 | 188 | 3.47e-108 | 310 |
Find 74 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATCCTTGCTCTCTTTCTT+TGG | 0.173886 | 7.2:+50216753 | None:intergenic |
| GAATTTGCAGACGAGCATTT+TGG | 0.208379 | 7.2:-50218944 | MS.gene023037:intron |
| GGCGATTCTCTTCTTCTTAT+CGG | 0.223662 | 7.2:+50216730 | None:intergenic |
| ACCAGAAGCTTCTTGCTTCC+AGG | 0.274677 | 7.2:-50216682 | MS.gene023037:CDS |
| TTATTTGGTTGCAGGGAAAA+AGG | 0.319097 | 7.2:-50216822 | MS.gene023037:intron |
| TGGTGCTAACAGGAATTTAA+AGG | 0.325501 | 7.2:-50218796 | MS.gene023037:intron |
| AGTAACTAGTCTTTGTATCT+TGG | 0.331940 | 7.2:+50216787 | None:intergenic |
| CGGATCTTGGACGCTCTCTT+AGG | 0.339335 | 7.2:+50218160 | None:intergenic |
| GTTGAAAAGCTTACGGATCT+TGG | 0.369922 | 7.2:+50218147 | None:intergenic |
| CTCTTTCTTTGGAGTGTAAG+AGG | 0.370544 | 7.2:+50216764 | None:intergenic |
| GTGTTCGTCTGTTGCTTCAC+AGG | 0.378377 | 7.2:-50218699 | MS.gene023037:CDS |
| ACCTGGAAGCAAGAAGCTTC+TGG | 0.379692 | 7.2:+50216681 | None:intergenic |
| AGACCTTTCTGTTCTGAACT+TGG | 0.382910 | 7.2:-50218251 | MS.gene023037:CDS |
| GTCAGGACTCCCTGCTTCAT+TGG | 0.387254 | 7.2:+50218730 | None:intergenic |
| GTAACTAGTCTTTGTATCTT+GGG | 0.392706 | 7.2:+50216788 | None:intergenic |
| CTCTTAGGACCTCTCATCCT+TGG | 0.398073 | 7.2:+50218175 | None:intergenic |
| GACGAACACGGCCAGGGGTC+AGG | 0.412360 | 7.2:+50218713 | None:intergenic |
| GGATTTCACAAGAGGTCAAT+GGG | 0.417305 | 7.2:-50218914 | MS.gene023037:CDS |
| TGCCTTAGCACTGGAAATCC+TGG | 0.423380 | 7.2:+50216610 | None:intergenic |
| GCTTCTTGCTTCCAGGTTGA+AGG | 0.423629 | 7.2:-50216675 | MS.gene023037:CDS |
| CTTGCTTTCGTGGGCATGGA+AGG | 0.423949 | 7.2:-50218324 | MS.gene023037:CDS |
| TCCTTGTTTGTCACAACCTC+CGG | 0.446389 | 7.2:+50218756 | None:intergenic |
| AAGTTCAGAACAGAAAGGTC+TGG | 0.453108 | 7.2:+50218253 | None:intergenic |
| CTCTCTCTGCTCCTTCAACC+TGG | 0.453539 | 7.2:+50216664 | None:intergenic |
| TGTTCGTCTGTTGCTTCACA+GGG | 0.455437 | 7.2:-50218698 | MS.gene023037:CDS |
| AGCAACAGACGAACACGGCC+AGG | 0.465092 | 7.2:+50218706 | None:intergenic |
| ACTCCTTGCTTTCGTGGGCA+TGG | 0.465842 | 7.2:-50218328 | MS.gene023037:CDS |
| CTTCTCAACATCGGTCAGGC+CGG | 0.479719 | 7.2:+50218198 | None:intergenic |
| ACAAGGATTTCCAATGAAGC+AGG | 0.479949 | 7.2:-50218740 | MS.gene023037:CDS |
| GAACTTGGTAATTGTGAAGA+AGG | 0.488543 | 7.2:-50218236 | MS.gene023037:CDS |
| TAGACAGGTTGAAAAGCTTA+CGG | 0.491080 | 7.2:+50218140 | None:intergenic |
| ACAGGAACTCCTTGCTTTCG+TGG | 0.493316 | 7.2:-50218334 | MS.gene023037:intron |
| CGCAGGAGGAAGTCCGTTCG+TGG | 0.499221 | 7.2:-50218289 | MS.gene023037:CDS |
| CGTGGGCATGGAAGGCGTAA+TGG | 0.499837 | 7.2:-50218316 | MS.gene023037:CDS |
| TTCTCAACATCGGTCAGGCC+GGG | 0.500903 | 7.2:+50218199 | None:intergenic |
| GAGGTCAATGGGGATGCTCT+TGG | 0.504931 | 7.2:-50218903 | MS.gene023037:CDS |
| TTGGCTTCTCAACATCGGTC+AGG | 0.507183 | 7.2:+50218194 | None:intergenic |
| AGGATTTCACAAGAGGTCAA+TGG | 0.507253 | 7.2:-50218915 | MS.gene023037:CDS |
| ATCCAGGATTTCCAGTGCTA+AGG | 0.509483 | 7.2:-50216612 | MS.gene023037:CDS |
| TCACATCATCATCCTTAGAC+AGG | 0.513297 | 7.2:+50218125 | None:intergenic |
| AGTTCAGAACAGAAAGGTCT+GGG | 0.537667 | 7.2:+50218254 | None:intergenic |
| TGTTGTAAATGTCCTACGGT+AGG | 0.539789 | 7.2:+50218087 | None:intergenic |
| AGGACATTTACAACAAAAGC+TGG | 0.541932 | 7.2:-50218079 | MS.gene023037:intron |
| AAGCAGGGAGTCCTGACCCC+TGG | 0.546007 | 7.2:-50218724 | MS.gene023037:CDS |
| GCTGACAATGCACCCACGAA+CGG | 0.547404 | 7.2:+50218276 | None:intergenic |
| GCAACAGACGAACACGGCCA+GGG | 0.547657 | 7.2:+50218707 | None:intergenic |
| CAGGAACTCCTTGCTTTCGT+GGG | 0.551855 | 7.2:-50218333 | MS.gene023037:CDS |
| GGCGTAATGGAGAGCGCAGG+AGG | 0.556424 | 7.2:-50218303 | MS.gene023037:CDS |
| CACTCCAAAGAAAGAGAGCA+AGG | 0.560832 | 7.2:-50216757 | MS.gene023037:CDS |
| AATGTTGCGAATCCCACCAC+TGG | 0.561300 | 7.2:-50219522 | MS.gene023037:CDS |
| TAAGGCAGCTGTCACCGCCT+AGG | 0.568165 | 7.2:-50216594 | None:intergenic |
| CTTCCATGCCCACGAAAGCA+AGG | 0.568809 | 7.2:+50218325 | None:intergenic |
| GGACAAGAGGATTTCACAAG+AGG | 0.571370 | 7.2:-50218922 | MS.gene023037:CDS |
| CAACAGACGAACACGGCCAG+GGG | 0.576712 | 7.2:+50218708 | None:intergenic |
| TGACCGATGTTGAGAAGCCA+AGG | 0.592857 | 7.2:-50218192 | MS.gene023037:CDS |
| GGTGACAGCTGCCTTAGCAC+TGG | 0.594937 | 7.2:+50216601 | None:intergenic |
| CATCCTTGGCTTCTCAACAT+CGG | 0.602359 | 7.2:+50218189 | None:intergenic |
| GTTGAGAAGCCAAGGATGAG+AGG | 0.608216 | 7.2:-50218184 | MS.gene023037:CDS |
| AATCGCCAAGGCAAAATCAG+AGG | 0.625414 | 7.2:-50216714 | MS.gene023037:CDS |
| GCAGGAGGAAGTCCGTTCGT+GGG | 0.626781 | 7.2:-50218288 | MS.gene023037:CDS |
| CAAGGATTTCCAATGAAGCA+GGG | 0.632810 | 7.2:-50218739 | MS.gene023037:CDS |
| GAAGGCGTAATGGAGAGCGC+AGG | 0.640543 | 7.2:-50218306 | MS.gene023037:CDS |
| CAATGGGGATGCTCTTGGTG+AGG | 0.642872 | 7.2:-50218898 | MS.gene023037:intron |
| AACTTGGTAATTGTGAAGAA+GGG | 0.654902 | 7.2:-50218235 | MS.gene023037:CDS |
| TGTGAAGCAACAGACGAACA+CGG | 0.657981 | 7.2:+50218701 | None:intergenic |
| TAAGAAGAAGAGAATCGCCA+AGG | 0.666176 | 7.2:-50216726 | MS.gene023037:CDS |
| AAGGGTGAGAATGATTTACC+CGG | 0.666590 | 7.2:-50218217 | MS.gene023037:CDS |
| TTACCAAGTTCAGAACAGAA+AGG | 0.669660 | 7.2:+50218248 | None:intergenic |
| ACCGGAGGTTGTGACAAACA+AGG | 0.687549 | 7.2:-50218757 | MS.gene023037:CDS |
| AGTATGTCAACACCTACCGT+AGG | 0.700274 | 7.2:-50218099 | MS.gene023037:CDS |
| GTTCGTCTGTTGCTTCACAG+GGG | 0.715022 | 7.2:-50218697 | MS.gene023037:intron |
| GATTTCACAAGAGGTCAATG+GGG | 0.738312 | 7.2:-50218913 | MS.gene023037:CDS |
| TGTCTAAGGATGATGATGTG+AGG | 0.746514 | 7.2:-50218123 | MS.gene023037:CDS |
| TGGTATGACAGCAACCTAGG+CGG | 0.774656 | 7.2:+50216580 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAATTTATCATCAAAT+AGG | + | chr7.2:50217686-50217705 | None:intergenic | 10.0% |
| !! | CATTCTATTAAATATAAATA+AGG | + | chr7.2:50219044-50219063 | None:intergenic | 10.0% |
| !! | TTAAAATAAACAAGTAAAAT+GGG | + | chr7.2:50216809-50216828 | None:intergenic | 10.0% |
| !!! | ATTTTGATATATATTCTAAA+TGG | - | chr7.2:50219403-50219422 | MS.gene023037:intron | 10.0% |
| !!! | TACAAATTTAAAATCTTTTT+GGG | + | chr7.2:50216887-50216906 | None:intergenic | 10.0% |
| !!! | TTTAAAATAAACAAGTAAAA+TGG | + | chr7.2:50216810-50216829 | None:intergenic | 10.0% |
| !! | TTTAACCTTATTATATCAAT+CGG | - | chr7.2:50218797-50218816 | MS.gene023037:intron | 15.0% |
| !! | TTTATTAAAATATCAATCTG+TGG | - | chr7.2:50218251-50218270 | MS.gene023037:CDS | 15.0% |
| !!! | ATTTTTAATAGAAATAGGTA+GGG | + | chr7.2:50217841-50217860 | None:intergenic | 15.0% |
| !!! | GATTGATATTTTAATAAACA+AGG | + | chr7.2:50218249-50218268 | None:intergenic | 15.0% |
| !!! | GTACAAATTTAAAATCTTTT+TGG | + | chr7.2:50216888-50216907 | None:intergenic | 15.0% |
| !!! | TATTTTTAATAGAAATAGGT+AGG | + | chr7.2:50217842-50217861 | None:intergenic | 15.0% |
| !!! | TTGTTTTTTGTGATATATAT+TGG | - | chr7.2:50217213-50217232 | MS.gene023037:intron | 15.0% |
| !! | AAAAAAAACAACGAGAATTA+TGG | + | chr7.2:50216621-50216640 | None:intergenic | 20.0% |
| !! | AAAGTTTAACAATTTGATAC+AGG | + | chr7.2:50218362-50218381 | None:intergenic | 20.0% |
| !! | AATAGAAAAATTACAAGGAT+GGG | + | chr7.2:50218209-50218228 | None:intergenic | 20.0% |
| !! | ACATGATATAGTATATTAAC+AGG | + | chr7.2:50219227-50219246 | None:intergenic | 20.0% |
| !! | ATATATATTCTAAATGGTAC+TGG | - | chr7.2:50219409-50219428 | MS.gene023037:intron | 20.0% |
| !! | ATTGATTAGTATAAGAGTTA+AGG | - | chr7.2:50216920-50216939 | MS.gene023037:intron | 20.0% |
| !! | GATGATATATTAATATTGGT+TGG | - | chr7.2:50217245-50217264 | MS.gene023037:intron | 20.0% |
| !! | GTGTGATGATATATTAATAT+TGG | - | chr7.2:50217241-50217260 | MS.gene023037:intron | 20.0% |
| !! | TGATTCATTTATTCATTAGA+AGG | - | chr7.2:50219018-50219037 | MS.gene023037:intron | 20.0% |
| !! | TTGATTAGTATAAGAGTTAA+GGG | - | chr7.2:50216921-50216940 | MS.gene023037:intron | 20.0% |
| !!! | ACTTATAGACTCTTTTAAAA+TGG | - | chr7.2:50219162-50219181 | MS.gene023037:intron | 20.0% |
| !!! | TACTATTATATCTTTTGAGT+CGG | - | chr7.2:50217802-50217821 | MS.gene023037:intron | 20.0% |
| ! | AGTGAAGTAAATGAATAAAG+CGG | - | chr7.2:50218561-50218580 | MS.gene023037:intron | 25.0% |
| ! | ATAGTTGTTAGCATAGAAAT+AGG | + | chr7.2:50218482-50218501 | None:intergenic | 25.0% |
| ! | ATCAAAATCAAGAAGGATAT+TGG | + | chr7.2:50218456-50218475 | None:intergenic | 25.0% |
| ! | ATCAGTCCAAATTATTTCAA+TGG | + | chr7.2:50219377-50219396 | None:intergenic | 25.0% |
| ! | CAAACTGTAACTGAATTATA+GGG | + | chr7.2:50218891-50218910 | None:intergenic | 25.0% |
| ! | CAACGAATAGAAAAATTACA+AGG | + | chr7.2:50218214-50218233 | None:intergenic | 25.0% |
| ! | CTATGTATCTTTGTAAAATC+TGG | - | chr7.2:50218618-50218637 | MS.gene023037:intron | 25.0% |
| ! | GAATAGAAAAATTACAAGGA+TGG | + | chr7.2:50218210-50218229 | None:intergenic | 25.0% |
| ! | TAGGTTTATCAAAATCAAGA+AGG | + | chr7.2:50218463-50218482 | None:intergenic | 25.0% |
| ! | TCTTAAAGCTGTATTATTCA+CGG | + | chr7.2:50218656-50218675 | None:intergenic | 25.0% |
| ! | TGTAAACAACTTAGATTGTT+TGG | - | chr7.2:50216976-50216995 | MS.gene023037:intron | 25.0% |
| ! | TGTAACCGATTGATATAATA+AGG | + | chr7.2:50218805-50218824 | None:intergenic | 25.0% |
| ! | TTAAAAAGAGGTCCATATTA+GGG | + | chr7.2:50218299-50218318 | None:intergenic | 25.0% |
| ! | TTTAAAAAGAGGTCCATATT+AGG | + | chr7.2:50218300-50218319 | None:intergenic | 25.0% |
| !! | AATATGCACCCTTTAAAAAA+TGG | + | chr7.2:50218861-50218880 | None:intergenic | 25.0% |
| !! | AATATGGACCTCTTTTTAAA+GGG | - | chr7.2:50218300-50218319 | MS.gene023037:CDS | 25.0% |
| !! | TAATATGGACCTCTTTTTAA+AGG | - | chr7.2:50218299-50218318 | MS.gene023037:CDS | 25.0% |
| !! | TATTTCTATGAATCTGAACA+TGG | + | chr7.2:50217277-50217296 | None:intergenic | 25.0% |
| !!! | ATTGATTTTAGTCAATACTC+TGG | - | chr7.2:50219336-50219355 | MS.gene023037:intron | 25.0% |
| !!! | CTAAAATCAATTTGTTACAC+AGG | + | chr7.2:50219327-50219346 | None:intergenic | 25.0% |
| !!! | TTTTTAAAGGGTGCATATTA+GGG | - | chr7.2:50218862-50218881 | MS.gene023037:intron | 25.0% |
| !!! | TTTTTTAAAGGGTGCATATT+AGG | - | chr7.2:50218861-50218880 | MS.gene023037:intron | 25.0% |
| AAACTACACAAACTTTCTGA+TGG | + | chr7.2:50219114-50219133 | None:intergenic | 30.0% | |
| AACTTAACAAACATGTGTGT+TGG | - | chr7.2:50218681-50218700 | MS.gene023037:intron | 30.0% | |
| ATAATGTTTGATGTCAGTGT+AGG | + | chr7.2:50217014-50217033 | None:intergenic | 30.0% | |
| ATCCTAAAAATTACACTGAC+AGG | + | chr7.2:50217599-50217618 | None:intergenic | 30.0% | |
| CTTAAATTATACACTACTCG+TGG | + | chr7.2:50219276-50219295 | None:intergenic | 30.0% | |
| GCAAACTGTAACTGAATTAT+AGG | + | chr7.2:50218892-50218911 | None:intergenic | 30.0% | |
| TCACATAACTCATAACAGAA+GGG | + | chr7.2:50218977-50218996 | None:intergenic | 30.0% | |
| TGGTGTCTATCTAACATTAA+GGG | + | chr7.2:50219192-50219211 | None:intergenic | 30.0% | |
| TGTGGATGTGATATAATTCA+GGG | - | chr7.2:50218269-50218288 | MS.gene023037:CDS | 30.0% | |
| TGTTATTCTGCTCAACTTAT+CGG | - | chr7.2:50218387-50218406 | MS.gene023037:intron | 30.0% | |
| TTCACATAACTCATAACAGA+AGG | + | chr7.2:50218978-50218997 | None:intergenic | 30.0% | |
| TTCAGGCCATTGAAATAATT+TGG | - | chr7.2:50219368-50219387 | MS.gene023037:intron | 30.0% | |
| ! | AACAGTATATTGTTGACTGT+AGG | - | chr7.2:50217632-50217651 | MS.gene023037:intron | 30.0% |
| ! | AACTTGGTAATTGTGAAGAA+GGG | - | chr7.2:50218019-50218038 | MS.gene023037:intron | 30.0% |
| ! | TTGGTGTCTATCTAACATTA+AGG | + | chr7.2:50219193-50219212 | None:intergenic | 30.0% |
| ! | TTTCTATTCGTTGTGTCATT+TGG | - | chr7.2:50218221-50218240 | MS.gene023037:CDS | 30.0% |
| ! | TTTTCATTGTTCACATGAAC+AGG | - | chr7.2:50217902-50217921 | MS.gene023037:intron | 30.0% |
| !! | AGTAACTAGTCTTTGTATCT+TGG | + | chr7.2:50219470-50219489 | None:intergenic | 30.0% |
| !! | CTTTTGTTGTAAATGTCCTA+CGG | + | chr7.2:50218174-50218193 | None:intergenic | 30.0% |
| !! | GTAACTAGTCTTTGTATCTT+GGG | + | chr7.2:50219469-50219488 | None:intergenic | 30.0% |
| !! | TCTAAATGGTACTGGTTATT+TGG | - | chr7.2:50219417-50219436 | MS.gene023037:intron | 30.0% |
| !! | TTCCATCAAGCTTTAAAACT+TGG | - | chr7.2:50218534-50218553 | MS.gene023037:intron | 30.0% |
| !! | TTTAGTCAATACTCTGGTTT+TGG | - | chr7.2:50219342-50219361 | MS.gene023037:intron | 30.0% |
| !! | TTTTAAAGGGTGCATATTAG+GGG | - | chr7.2:50218863-50218882 | MS.gene023037:intron | 30.0% |
| !! | TTTTTAAAGGGTCCAAACAT+GGG | - | chr7.2:50218312-50218331 | MS.gene023037:CDS | 30.0% |
| !!! | ATGGTTGGACCATTTTTTAA+AGG | - | chr7.2:50218849-50218868 | MS.gene023037:intron | 30.0% |
| !!! | GGATACGTTTTTAAAATCAC+CGG | - | chr7.2:50217479-50217498 | MS.gene023037:intron | 30.0% |
| !!! | GTTTGTGTAGTTTTGTTGAT+TGG | - | chr7.2:50219121-50219140 | MS.gene023037:intron | 30.0% |
| !!! | TGGTTGGACCATTTTTTAAA+GGG | - | chr7.2:50218850-50218869 | MS.gene023037:intron | 30.0% |
| !!! | TGTTGATTGGTTTTAGTACT+TGG | - | chr7.2:50219134-50219153 | MS.gene023037:intron | 30.0% |
| !!! | TGTTTTGAGAAAGTGAAATG+TGG | - | chr7.2:50216950-50216969 | MS.gene023037:intron | 30.0% |
| !!! | TTCCAAGTTTTAAAGCTTGA+TGG | + | chr7.2:50218539-50218558 | None:intergenic | 30.0% |
| AACGAGAATTATGGTTACAG+TGG | + | chr7.2:50216612-50216631 | None:intergenic | 35.0% | |
| AATCAAGAAGGATATTGGAC+TGG | + | chr7.2:50218451-50218470 | None:intergenic | 35.0% | |
| AATTTGATACAGGCAATAGC+CGG | + | chr7.2:50218352-50218371 | None:intergenic | 35.0% | |
| AGGACATTTACAACAAAAGC+TGG | - | chr7.2:50218175-50218194 | MS.gene023037:CDS | 35.0% | |
| ATCAAGAAGGATATTGGACT+GGG | + | chr7.2:50218450-50218469 | None:intergenic | 35.0% | |
| CACATAACTCATAACAGAAG+GGG | + | chr7.2:50218976-50218995 | None:intergenic | 35.0% | |
| CTGTGGATGTGATATAATTC+AGG | - | chr7.2:50218268-50218287 | MS.gene023037:CDS | 35.0% | |
| GTGGATGTGATATAATTCAG+GGG | - | chr7.2:50218270-50218289 | MS.gene023037:CDS | 35.0% | |
| GTTTAGCAAAAAAGAGATCC+AGG | - | chr7.2:50219626-50219645 | MS.gene023037:intron | 35.0% | |
| TATCAATCGGTTACATTACC+TGG | - | chr7.2:50218810-50218829 | MS.gene023037:intron | 35.0% | |
| TCAACTTAACGTGTTAGTGT+CGG | + | chr7.2:50217038-50217057 | None:intergenic | 35.0% | |
| TTAACAAACATGTGTGTTGG+AGG | - | chr7.2:50218684-50218703 | MS.gene023037:intron | 35.0% | |
| TTACCAAGTTCAGAACAGAA+AGG | + | chr7.2:50218009-50218028 | None:intergenic | 35.0% | |
| TTATTTGGTTGCAGGGAAAA+AGG | - | chr7.2:50219432-50219451 | MS.gene023037:intron | 35.0% | |
| TTGATTGTAATCACATGTGC+TGG | - | chr7.2:50217088-50217107 | MS.gene023037:intron | 35.0% | |
| ! | AATTTGCAGACGAGCATTTT+GGG | - | chr7.2:50217311-50217330 | MS.gene023037:intron | 35.0% |
| ! | AGCCTGTCAGTGTAATTTTT+AGG | - | chr7.2:50217594-50217613 | MS.gene023037:intron | 35.0% |
| ! | AGTATATTGTTGACTGTAGG+TGG | - | chr7.2:50217635-50217654 | MS.gene023037:intron | 35.0% |
| ! | GAACTTGGTAATTGTGAAGA+AGG | - | chr7.2:50218018-50218037 | MS.gene023037:intron | 35.0% |
| ! | TAAGCTTTTCAACCTGTCTA+AGG | - | chr7.2:50218117-50218136 | MS.gene023037:CDS | 35.0% |
| ! | TAGACAGGTTGAAAAGCTTA+CGG | + | chr7.2:50218117-50218136 | None:intergenic | 35.0% |
| ! | TGGTGCTAACAGGAATTTAA+AGG | - | chr7.2:50217458-50217477 | MS.gene023037:intron | 35.0% |
| ! | TGTTTGGACCCTTTAAAAAG+AGG | + | chr7.2:50218311-50218330 | None:intergenic | 35.0% |
| ! | TTTCCTAGAGTAGTGTCATT+TGG | - | chr7.2:50219067-50219086 | MS.gene023037:intron | 35.0% |
| !! | CTTTTTAAAGGGTCCAAACA+TGG | - | chr7.2:50218311-50218330 | MS.gene023037:CDS | 35.0% |
| !!! | TACGTTTTTAAAATCACCGG+AGG | - | chr7.2:50217482-50217501 | MS.gene023037:intron | 35.0% |
| !!! | TACTCTGGTTTTGGTTATTC+AGG | - | chr7.2:50219351-50219370 | MS.gene023037:intron | 35.0% |
| AAGGGTGAGAATGATTTACC+CGG | - | chr7.2:50218037-50218056 | MS.gene023037:intron | 40.0% | |
| AAGTTCAGAACAGAAAGGTC+TGG | + | chr7.2:50218004-50218023 | None:intergenic | 40.0% | |
| ACAAGGATTTCCAATGAAGC+AGG | - | chr7.2:50217514-50217533 | MS.gene023037:intron | 40.0% | |
| AGATAGAGGCAGCAATAAAG+GGG | - | chr7.2:50218744-50218763 | MS.gene023037:CDS | 40.0% | |
| AGGATTTCACAAGAGGTCAA+TGG | - | chr7.2:50217339-50217358 | MS.gene023037:intron | 40.0% | |
| AGTTCAGAACAGAAAGGTCT+GGG | + | chr7.2:50218003-50218022 | None:intergenic | 40.0% | |
| ATTCAGGGGTAACCCTAATA+TGG | - | chr7.2:50218284-50218303 | MS.gene023037:CDS | 40.0% | |
| CAAGGATTTCCAATGAAGCA+GGG | - | chr7.2:50217515-50217534 | MS.gene023037:intron | 40.0% | |
| CAATCCTTGCTCTCTTTCTT+TGG | + | chr7.2:50219504-50219523 | None:intergenic | 40.0% | |
| GAACCAAATGACACTACTCT+AGG | + | chr7.2:50219073-50219092 | None:intergenic | 40.0% | |
| GAGATAGAGGCAGCAATAAA+GGG | - | chr7.2:50218743-50218762 | MS.gene023037:CDS | 40.0% | |
| GATTTCACAAGAGGTCAATG+GGG | - | chr7.2:50217341-50217360 | MS.gene023037:intron | 40.0% | |
| GGATTTCACAAGAGGTCAAT+GGG | - | chr7.2:50217340-50217359 | MS.gene023037:intron | 40.0% | |
| GGCGATTCTCTTCTTCTTAT+CGG | + | chr7.2:50219527-50219546 | None:intergenic | 40.0% | |
| GTTGAAAAGCTTACGGATCT+TGG | + | chr7.2:50218110-50218129 | None:intergenic | 40.0% | |
| TAAGAAGAAGAGAATCGCCA+AGG | - | chr7.2:50219528-50219547 | MS.gene023037:CDS | 40.0% | |
| TATCTCCAAGTCCAATTCCA+TGG | + | chr7.2:50218729-50218748 | None:intergenic | 40.0% | |
| TCAAGAAGGATATTGGACTG+GGG | + | chr7.2:50218449-50218468 | None:intergenic | 40.0% | |
| TCACATCATCATCCTTAGAC+AGG | + | chr7.2:50218132-50218151 | None:intergenic | 40.0% | |
| TGTGTTGGAGGAATGACAAA+GGG | - | chr7.2:50218696-50218715 | MS.gene023037:intron | 40.0% | |
| TGTTGTAAATGTCCTACGGT+AGG | + | chr7.2:50218170-50218189 | None:intergenic | 40.0% | |
| TTAACAGGCATGCTTCAGTT+TGG | + | chr7.2:50219212-50219231 | None:intergenic | 40.0% | |
| ! | AGACCTTTCTGTTCTGAACT+TGG | - | chr7.2:50218003-50218022 | MS.gene023037:intron | 40.0% |
| ! | GAATTTGCAGACGAGCATTT+TGG | - | chr7.2:50217310-50217329 | MS.gene023037:intron | 40.0% |
| ! | TGATGGACGGTGACAAATAT+TGG | - | chr7.2:50217111-50217130 | MS.gene023037:intron | 40.0% |
| ! | TGTCTAAGGATGATGATGTG+AGG | - | chr7.2:50218131-50218150 | MS.gene023037:CDS | 40.0% |
| !! | AATAGCCGGTTAAGTTGAAG+AGG | + | chr7.2:50218338-50218357 | None:intergenic | 40.0% |
| !! | CTCTTTCTTTGGAGTGTAAG+AGG | + | chr7.2:50219493-50219512 | None:intergenic | 40.0% |
| !! | GTACTGGTTATTTGGTTGCA+GGG | - | chr7.2:50219425-50219444 | MS.gene023037:intron | 40.0% |
| !! | GTAGTGTCATTTGGTTCATG+TGG | - | chr7.2:50219076-50219095 | MS.gene023037:intron | 40.0% |
| AAGTTGAAGAGGCCCATGTT+TGG | + | chr7.2:50218327-50218346 | None:intergenic | 45.0% | |
| AATCGCCAAGGCAAAATCAG+AGG | - | chr7.2:50219540-50219559 | MS.gene023037:intron | 45.0% | |
| AGTATGTCAACACCTACCGT+AGG | - | chr7.2:50218155-50218174 | MS.gene023037:CDS | 45.0% | |
| AGTGACCATGGAATTGGACT+TGG | - | chr7.2:50218721-50218740 | MS.gene023037:CDS | 45.0% | |
| ATCCAGGATTTCCAGTGCTA+AGG | - | chr7.2:50219642-50219661 | MS.gene023037:intron | 45.0% | |
| ATGGGCCTCTTCAACTTAAC+CGG | - | chr7.2:50218330-50218349 | MS.gene023037:CDS | 45.0% | |
| CAAACTTTCTGATGGCACCT+TGG | + | chr7.2:50219106-50219125 | None:intergenic | 45.0% | |
| CACTCCAAAGAAAGAGAGCA+AGG | - | chr7.2:50219497-50219516 | MS.gene023037:CDS | 45.0% | |
| CATCCTTGGCTTCTCAACAT+CGG | + | chr7.2:50218068-50218087 | None:intergenic | 45.0% | |
| CTCGTCTGCAAATTCAAGTC+AGG | + | chr7.2:50217305-50217324 | None:intergenic | 45.0% | |
| GACATTTGCCATTACATCGC+TGG | - | chr7.2:50217438-50217457 | MS.gene023037:intron | 45.0% | |
| GGAATTGGACTTGGAGATAG+AGG | - | chr7.2:50218730-50218749 | MS.gene023037:CDS | 45.0% | |
| GGACAAGAGGATTTCACAAG+AGG | - | chr7.2:50217332-50217351 | MS.gene023037:intron | 45.0% | |
| GGAGATAGAGGCAGCAATAA+AGG | - | chr7.2:50218742-50218761 | MS.gene023037:CDS | 45.0% | |
| GTGTGTTGGAGGAATGACAA+AGG | - | chr7.2:50218695-50218714 | MS.gene023037:intron | 45.0% | |
| GTGTTGGAGGAATGACAAAG+GGG | - | chr7.2:50218697-50218716 | MS.gene023037:intron | 45.0% | |
| TGCTAGACAGTGACACATGT+GGG | - | chr7.2:50217138-50217157 | MS.gene023037:intron | 45.0% | |
| TGTGAAGCAACAGACGAACA+CGG | + | chr7.2:50217556-50217575 | None:intergenic | 45.0% | |
| TGTTAGCACCAGCGATGTAA+TGG | + | chr7.2:50217449-50217468 | None:intergenic | 45.0% | |
| TTGATGTCAGTGTAGGTGCT+TGG | + | chr7.2:50217007-50217026 | None:intergenic | 45.0% | |
| TTGGTTCATGTGGCTTACCA+AGG | - | chr7.2:50219086-50219105 | MS.gene023037:intron | 45.0% | |
| ! | AAAGCGGAAACAGTGCTACT+TGG | - | chr7.2:50218577-50218596 | MS.gene023037:intron | 45.0% |
| ! | ATTACATCGCTGGTGCTAAC+AGG | - | chr7.2:50217448-50217467 | MS.gene023037:intron | 45.0% |
| ! | GTAATCACATGTGCTGGTGA+TGG | - | chr7.2:50217094-50217113 | MS.gene023037:intron | 45.0% |
| ! | TCCTTGTTTGTCACAACCTC+CGG | + | chr7.2:50217501-50217520 | None:intergenic | 45.0% |
| ! | TGTTCGTCTGTTGCTTCACA+GGG | - | chr7.2:50217556-50217575 | MS.gene023037:intron | 45.0% |
| !! | AAGCTTTTTCTGGCATCCAG+TGG | + | chr7.2:50216751-50216770 | None:intergenic | 45.0% |
| !! | CGTCGATCTCAAGCTTTTTC+TGG | + | chr7.2:50216761-50216780 | None:intergenic | 45.0% |
| !! | GGAAACAGTGCTACTTGGTA+AGG | - | chr7.2:50218582-50218601 | MS.gene023037:intron | 45.0% |
| !! | GGTACTGGTTATTTGGTTGC+AGG | - | chr7.2:50219424-50219443 | MS.gene023037:intron | 45.0% |
| !! | TTTTTCTGGCATCCAGTGGT+GGG | + | chr7.2:50216747-50216766 | None:intergenic | 45.0% |
| !! | ACAAAATATTAAAATTATTT+AGG | + | chr7.2:50216864-50216883 | None:intergenic | 5.0% |
| !!! | AATTTATTTTTAATAGAAAT+AGG | + | chr7.2:50217846-50217865 | None:intergenic | 5.0% |
| AATGTTGCGAATCCCACCAC+TGG | - | chr7.2:50216732-50216751 | MS.gene023037:CDS | 50.0% | |
| ACACTGACAGGCTACGCAAA+AGG | + | chr7.2:50217587-50217606 | None:intergenic | 50.0% | |
| ACAGGAACTCCTTGCTTTCG+TGG | - | chr7.2:50217920-50217939 | MS.gene023037:intron | 50.0% | |
| ACCAGAAGCTTCTTGCTTCC+AGG | - | chr7.2:50219572-50219591 | MS.gene023037:intron | 50.0% | |
| ACCGGAGGTTGTGACAAACA+AGG | - | chr7.2:50217497-50217516 | MS.gene023037:intron | 50.0% | |
| ACCTGGAAGCAAGAAGCTTC+TGG | + | chr7.2:50219576-50219595 | None:intergenic | 50.0% | |
| AGGGGTAGTGACCATGGAAT+TGG | - | chr7.2:50218715-50218734 | MS.gene023037:CDS | 50.0% | |
| ATAGTTCAACCTGCTGCACC+AGG | + | chr7.2:50218831-50218850 | None:intergenic | 50.0% | |
| CAGGAACTCCTTGCTTTCGT+GGG | - | chr7.2:50217921-50217940 | MS.gene023037:intron | 50.0% | |
| CTCTTAGGACCTCTCATCCT+TGG | + | chr7.2:50218082-50218101 | None:intergenic | 50.0% | |
| GTGCTAGACAGTGACACATG+TGG | - | chr7.2:50217137-50217156 | MS.gene023037:intron | 50.0% | |
| GTTACATTACCTGGTGCAGC+AGG | - | chr7.2:50218819-50218838 | MS.gene023037:intron | 50.0% | |
| GTTGAGAAGCCAAGGATGAG+AGG | - | chr7.2:50218070-50218089 | MS.gene023037:intron | 50.0% | |
| TGACAAAGGGGTAGTGACCA+TGG | - | chr7.2:50218709-50218728 | MS.gene023037:CDS | 50.0% | |
| TGACCGATGTTGAGAAGCCA+AGG | - | chr7.2:50218062-50218081 | MS.gene023037:intron | 50.0% | |
| TTGGCTTCTCAACATCGGTC+AGG | + | chr7.2:50218063-50218082 | None:intergenic | 50.0% | |
| ! | AGCTGCCTCTGATTTTGCCT+TGG | + | chr7.2:50219548-50219567 | None:intergenic | 50.0% |
| ! | GCAGCAGGTTGAACTATGGT+TGG | - | chr7.2:50218834-50218853 | MS.gene023037:intron | 50.0% |
| ! | GCTTCTTGCTTCCAGGTTGA+AGG | - | chr7.2:50219579-50219598 | MS.gene023037:intron | 50.0% |
| ! | GTGTTCGTCTGTTGCTTCAC+AGG | - | chr7.2:50217555-50217574 | MS.gene023037:intron | 50.0% |
| ! | GTTCGTCTGTTGCTTCACAG+GGG | - | chr7.2:50217557-50217576 | MS.gene023037:intron | 50.0% |
| ! | TGCCTTAGCACTGGAAATCC+TGG | + | chr7.2:50219647-50219666 | None:intergenic | 50.0% |
| ! | TGGTGCAGCAGGTTGAACTA+TGG | - | chr7.2:50218830-50218849 | MS.gene023037:intron | 50.0% |
| !! | CTTTTTCTGGCATCCAGTGG+TGG | + | chr7.2:50216748-50216767 | None:intergenic | 50.0% |
| !! | TCACATGTGCTGGTGATGGA+CGG | - | chr7.2:50217098-50217117 | MS.gene023037:intron | 50.0% |
| !!! | GACGAGCATTTTGGGACAAG+AGG | - | chr7.2:50217319-50217338 | MS.gene023037:intron | 50.0% |
| ACTCCTTGCTTTCGTGGGCA+TGG | - | chr7.2:50217926-50217945 | MS.gene023037:intron | 55.0% | |
| CAATGGGGATGCTCTTGGTG+AGG | - | chr7.2:50217356-50217375 | MS.gene023037:intron | 55.0% | |
| CGGATCTTGGACGCTCTCTT+AGG | + | chr7.2:50218097-50218116 | None:intergenic | 55.0% | |
| CTCTCTCTGCTCCTTCAACC+TGG | + | chr7.2:50219593-50219612 | None:intergenic | 55.0% | |
| CTTCCATGCCCACGAAAGCA+AGG | + | chr7.2:50217932-50217951 | None:intergenic | 55.0% | |
| CTTCTCAACATCGGTCAGGC+CGG | + | chr7.2:50218059-50218078 | None:intergenic | 55.0% | |
| CTTGCTTTCGTGGGCATGGA+AGG | - | chr7.2:50217930-50217949 | MS.gene023037:intron | 55.0% | |
| GAGGTCAATGGGGATGCTCT+TGG | - | chr7.2:50217351-50217370 | MS.gene023037:intron | 55.0% | |
| GCTGACAATGCACCCACGAA+CGG | + | chr7.2:50217981-50218000 | None:intergenic | 55.0% | |
| GTCAGGACTCCCTGCTTCAT+TGG | + | chr7.2:50217527-50217546 | None:intergenic | 55.0% | |
| TTCTCAACATCGGTCAGGCC+GGG | + | chr7.2:50218058-50218077 | None:intergenic | 55.0% | |
| AGCAACAGACGAACACGGCC+AGG | + | chr7.2:50217551-50217570 | None:intergenic | 60.0% | |
| CAACAGACGAACACGGCCAG+GGG | + | chr7.2:50217549-50217568 | None:intergenic | 60.0% | |
| GCAACAGACGAACACGGCCA+GGG | + | chr7.2:50217550-50217569 | None:intergenic | 60.0% | |
| GCAGGAGGAAGTCCGTTCGT+GGG | - | chr7.2:50217966-50217985 | MS.gene023037:intron | 60.0% | |
| GGTGACAGCTGCCTTAGCAC+TGG | + | chr7.2:50219656-50219675 | None:intergenic | 60.0% | |
| ! | CGTGGGCATGGAAGGCGTAA+TGG | - | chr7.2:50217938-50217957 | MS.gene023037:intron | 60.0% |
| ! | GAAGGCGTAATGGAGAGCGC+AGG | - | chr7.2:50217948-50217967 | MS.gene023037:intron | 60.0% |
| AAGCAGGGAGTCCTGACCCC+TGG | - | chr7.2:50217530-50217549 | MS.gene023037:intron | 65.0% | |
| CGCAGGAGGAAGTCCGTTCG+TGG | - | chr7.2:50217965-50217984 | MS.gene023037:intron | 65.0% | |
| ! | GGCGTAATGGAGAGCGCAGG+AGG | - | chr7.2:50217951-50217970 | MS.gene023037:intron | 65.0% |
| GACGAACACGGCCAGGGGTC+AGG | + | chr7.2:50217544-50217563 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 50216595 | 50219681 | 50216595 | ID=MS.gene023037 |
| chr7.2 | mRNA | 50216595 | 50219681 | 50216595 | ID=MS.gene023037.t1;Parent=MS.gene023037 |
| chr7.2 | exon | 50219676 | 50219681 | 50219676 | ID=MS.gene023037.t1.exon1;Parent=MS.gene023037.t1 |
| chr7.2 | CDS | 50219676 | 50219681 | 50219676 | ID=cds.MS.gene023037.t1;Parent=MS.gene023037.t1 |
| chr7.2 | exon | 50219483 | 50219547 | 50219483 | ID=MS.gene023037.t1.exon2;Parent=MS.gene023037.t1 |
| chr7.2 | CDS | 50219483 | 50219547 | 50219483 | ID=cds.MS.gene023037.t1;Parent=MS.gene023037.t1 |
| chr7.2 | exon | 50218899 | 50218956 | 50218899 | ID=MS.gene023037.t1.exon3;Parent=MS.gene023037.t1 |
| chr7.2 | CDS | 50218899 | 50218956 | 50218899 | ID=cds.MS.gene023037.t1;Parent=MS.gene023037.t1 |
| chr7.2 | exon | 50218698 | 50218806 | 50218698 | ID=MS.gene023037.t1.exon4;Parent=MS.gene023037.t1 |
| chr7.2 | CDS | 50218698 | 50218806 | 50218698 | ID=cds.MS.gene023037.t1;Parent=MS.gene023037.t1 |
| chr7.2 | exon | 50218080 | 50218352 | 50218080 | ID=MS.gene023037.t1.exon5;Parent=MS.gene023037.t1 |
| chr7.2 | CDS | 50218080 | 50218352 | 50218080 | ID=cds.MS.gene023037.t1;Parent=MS.gene023037.t1 |
| chr7.2 | exon | 50216595 | 50216830 | 50216595 | ID=MS.gene023037.t1.exon6;Parent=MS.gene023037.t1 |
| chr7.2 | CDS | 50216595 | 50216830 | 50216595 | ID=cds.MS.gene023037.t1;Parent=MS.gene023037.t1 |
| Gene Sequence |
| Protein sequence |
