Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011512.t1 | XP_013457621.1 | 98.3 | 770 | 13 | 0 | 1 | 770 | 1 | 770 | 0.00E+00 | 1509.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011512.t1 | Q940Y1 | 68.1 | 772 | 186 | 12 | 1 | 765 | 1 | 719 | 4.3e-298 | 1025.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011512.t1 | A0A072UPM8 | 98.3 | 770 | 13 | 0 | 1 | 770 | 1 | 770 | 0.0e+00 | 1509.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene070492 | MS.gene011512 | PPI |
| MS.gene016742 | MS.gene011512 | PPI |
| MS.gene070510 | MS.gene011512 | PPI |
| MS.gene81622 | MS.gene011512 | PPI |
| MS.gene67840 | MS.gene011512 | PPI |
| MS.gene016743 | MS.gene011512 | PPI |
| MS.gene81617 | MS.gene011512 | PPI |
| MS.gene37911 | MS.gene011512 | PPI |
| MS.gene057884 | MS.gene011512 | PPI |
| MS.gene057883 | MS.gene011512 | PPI |
| MS.gene016758 | MS.gene011512 | PPI |
| MS.gene81620 | MS.gene011512 | PPI |
| MS.gene070505 | MS.gene011512 | PPI |
| MS.gene057886 | MS.gene011512 | PPI |
| MS.gene070509 | MS.gene011512 | PPI |
| MS.gene070503 | MS.gene011512 | PPI |
| MS.gene070507 | MS.gene011512 | PPI |
| MS.gene070511 | MS.gene011512 | PPI |
| MS.gene81615 | MS.gene011512 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011512.t1 | MTR_4g101410 | 98.312 | 770 | 13 | 0 | 1 | 770 | 1 | 770 | 0.0 | 1579 |
| MS.gene011512.t1 | MTR_4g101410 | 98.516 | 539 | 8 | 0 | 232 | 770 | 1 | 539 | 0.0 | 1119 |
| MS.gene011512.t1 | MTR_3g073040 | 54.419 | 792 | 303 | 12 | 6 | 759 | 1 | 772 | 0.0 | 841 |
| MS.gene011512.t1 | MTR_3g073040 | 54.293 | 792 | 303 | 13 | 6 | 759 | 1 | 771 | 0.0 | 835 |
| MS.gene011512.t1 | MTR_5g459350 | 57.462 | 717 | 284 | 10 | 55 | 765 | 52 | 753 | 0.0 | 793 |
| MS.gene011512.t1 | MTR_3g086340 | 54.698 | 713 | 306 | 9 | 58 | 758 | 95 | 802 | 0.0 | 778 |
| MS.gene011512.t1 | MTR_3g097270 | 54.357 | 723 | 282 | 12 | 55 | 766 | 73 | 758 | 0.0 | 774 |
| MS.gene011512.t1 | MTR_3g073040 | 51.501 | 633 | 250 | 11 | 6 | 601 | 1 | 613 | 0.0 | 620 |
| MS.gene011512.t1 | MTR_3g086340 | 53.176 | 551 | 245 | 5 | 58 | 598 | 95 | 642 | 0.0 | 582 |
| MS.gene011512.t1 | MTR_4g064110 | 32.626 | 377 | 229 | 12 | 393 | 754 | 71 | 437 | 3.30e-45 | 169 |
| MS.gene011512.t1 | MTR_7g061830 | 33.245 | 376 | 228 | 11 | 391 | 752 | 73 | 439 | 1.11e-43 | 164 |
| MS.gene011512.t1 | MTR_4g115490 | 54.000 | 100 | 21 | 4 | 379 | 476 | 74 | 150 | 1.13e-18 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011512.t1 | AT4G22540 | 68.912 | 772 | 180 | 12 | 1 | 765 | 1 | 719 | 0.0 | 1078 |
| MS.gene011512.t1 | AT4G22540 | 68.912 | 772 | 180 | 12 | 1 | 765 | 1 | 719 | 0.0 | 1078 |
| MS.gene011512.t1 | AT4G12460 | 66.532 | 741 | 190 | 9 | 31 | 765 | 3 | 691 | 0.0 | 1011 |
| MS.gene011512.t1 | AT4G12460 | 66.532 | 741 | 190 | 9 | 31 | 765 | 3 | 691 | 0.0 | 1011 |
| MS.gene011512.t1 | AT4G12460 | 66.442 | 742 | 190 | 10 | 31 | 765 | 3 | 692 | 0.0 | 1008 |
| MS.gene011512.t1 | AT4G12460 | 65.331 | 649 | 167 | 9 | 31 | 673 | 3 | 599 | 0.0 | 858 |
| MS.gene011512.t1 | AT4G12460 | 65.231 | 650 | 167 | 10 | 31 | 673 | 3 | 600 | 0.0 | 853 |
| MS.gene011512.t1 | AT4G08180 | 58.815 | 709 | 280 | 6 | 55 | 759 | 106 | 806 | 0.0 | 843 |
| MS.gene011512.t1 | AT4G08180 | 58.815 | 709 | 280 | 6 | 55 | 759 | 106 | 806 | 0.0 | 843 |
| MS.gene011512.t1 | AT4G08180 | 58.815 | 709 | 279 | 7 | 55 | 759 | 106 | 805 | 0.0 | 838 |
| MS.gene011512.t1 | AT4G08180 | 58.533 | 709 | 281 | 7 | 55 | 759 | 106 | 805 | 0.0 | 833 |
| MS.gene011512.t1 | AT2G31020 | 52.651 | 811 | 297 | 14 | 6 | 763 | 1 | 777 | 0.0 | 810 |
| MS.gene011512.t1 | AT4G22540 | 70.513 | 546 | 121 | 5 | 221 | 765 | 2 | 508 | 0.0 | 809 |
| MS.gene011512.t1 | AT4G22540 | 70.513 | 546 | 121 | 5 | 221 | 765 | 2 | 508 | 0.0 | 809 |
| MS.gene011512.t1 | AT4G22540 | 70.513 | 546 | 121 | 5 | 221 | 765 | 2 | 508 | 0.0 | 809 |
| MS.gene011512.t1 | AT4G22540 | 70.513 | 546 | 121 | 5 | 221 | 765 | 2 | 508 | 0.0 | 809 |
| MS.gene011512.t1 | AT4G12460 | 68.440 | 545 | 129 | 4 | 221 | 765 | 2 | 503 | 0.0 | 788 |
| MS.gene011512.t1 | AT4G12460 | 68.440 | 545 | 129 | 4 | 221 | 765 | 2 | 503 | 0.0 | 788 |
| MS.gene011512.t1 | AT4G12460 | 68.440 | 545 | 129 | 4 | 221 | 765 | 2 | 503 | 0.0 | 788 |
| MS.gene011512.t1 | AT1G13170 | 54.420 | 724 | 308 | 9 | 50 | 761 | 90 | 803 | 0.0 | 788 |
| MS.gene011512.t1 | AT1G13170 | 52.886 | 745 | 308 | 10 | 50 | 761 | 90 | 824 | 0.0 | 774 |
| MS.gene011512.t1 | AT4G12460 | 78.706 | 371 | 71 | 2 | 395 | 765 | 1 | 363 | 0.0 | 640 |
| MS.gene011512.t1 | AT2G31030 | 68.613 | 411 | 123 | 1 | 350 | 760 | 85 | 489 | 0.0 | 610 |
| MS.gene011512.t1 | AT3G09300 | 34.232 | 371 | 217 | 13 | 393 | 747 | 75 | 434 | 1.28e-47 | 176 |
| MS.gene011512.t1 | AT5G02100 | 33.065 | 372 | 220 | 12 | 393 | 747 | 43 | 402 | 2.68e-46 | 171 |
| MS.gene011512.t1 | AT5G02100 | 33.065 | 372 | 220 | 12 | 393 | 747 | 70 | 429 | 3.58e-46 | 171 |
| MS.gene011512.t1 | AT5G59420 | 32.880 | 368 | 224 | 11 | 391 | 744 | 68 | 426 | 2.45e-43 | 163 |
| MS.gene011512.t1 | AT1G77730 | 35.242 | 227 | 136 | 4 | 48 | 272 | 47 | 264 | 5.94e-41 | 151 |
| MS.gene011512.t1 | AT5G02100 | 33.333 | 243 | 154 | 6 | 393 | 632 | 70 | 307 | 6.84e-32 | 127 |
Find 202 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGCTGCCTTTGCTGTTTC+TGG | 0.052254 | 8.2:+21945025 | MS.gene011512:CDS |
| AAAATCCATTCTTTGTTAAT+TGG | 0.181482 | 8.2:-21942919 | None:intergenic |
| TGAAATTCACCAAATATATC+TGG | 0.207215 | 8.2:-21948741 | None:intergenic |
| TTCCCCTAACAAGGGATTAA+AGG | 0.210036 | 8.2:-21945080 | None:intergenic |
| TTCGATATACTGGTGGATAT+TGG | 0.234820 | 8.2:+21948685 | MS.gene011512:CDS |
| CTGACGGCGAAGAGCGTTTC+CGG | 0.254872 | 8.2:-21939512 | None:intergenic |
| AAGGTAGAGGATGGAGGTTT+TGG | 0.259692 | 8.2:+21945898 | MS.gene011512:CDS |
| GTAACATTCATTCAAAGTTT+TGG | 0.260982 | 8.2:+21945928 | MS.gene011512:CDS |
| AAGCCCTTTAATCCCTTGTT+AGG | 0.261850 | 8.2:+21945076 | MS.gene011512:CDS |
| TTTGACGAAGTGTAATCTTT+AGG | 0.279881 | 8.2:-21947331 | None:intergenic |
| AGCATATGAGCATGGGAAAA+AGG | 0.309220 | 8.2:+21944346 | MS.gene011512:CDS |
| GGAATTTGAGAAGGCAAATA+TGG | 0.309519 | 8.2:+21947670 | MS.gene011512:CDS |
| CTTTACAAATGGACTAATTA+CGG | 0.310331 | 8.2:+21939331 | MS.gene011512:CDS |
| AGCTTCCACCCACGGATTCC+AGG | 0.322458 | 8.2:+21947615 | MS.gene011512:CDS |
| ACAATGATGTATGATGATTA+TGG | 0.323008 | 8.2:+21944128 | MS.gene011512:CDS |
| GGATCAGAAGCCACGGTTGC+CGG | 0.323208 | 8.2:+21939304 | MS.gene011512:CDS |
| TTGTGATCATCATGGGAATA+TGG | 0.330778 | 8.2:+21946163 | MS.gene011512:CDS |
| TCCGGCGTCTCTATCCATTC+TGG | 0.334542 | 8.2:-21939494 | None:intergenic |
| AGGAGAAGGGCGTTAGTCTT+TGG | 0.335192 | 8.2:+21944198 | MS.gene011512:CDS |
| CTCCTACCTGGCGAGGATTT+CGG | 0.339067 | 8.2:-21946247 | None:intergenic |
| TCGATATACTGGTGGATATT+GGG | 0.340088 | 8.2:+21948686 | MS.gene011512:CDS |
| CATTTCTGAAGGGATGATAT+TGG | 0.340358 | 8.2:-21944287 | None:intergenic |
| TCAAGGAAAATGCAAGAAAA+TGG | 0.353504 | 8.2:+21948618 | MS.gene011512:CDS |
| TCCCCTAACAAGGGATTAAA+GGG | 0.357578 | 8.2:-21945079 | None:intergenic |
| CTGGTTTGTTTGATACCATT+AGG | 0.365540 | 8.2:+21941356 | MS.gene011512:CDS |
| ATCGACGACGTACGCTTAAT+CGG | 0.368584 | 8.2:+21939448 | MS.gene011512:CDS |
| TTTGGAGTACTCCTATCTTC+TGG | 0.377023 | 8.2:+21944319 | MS.gene011512:CDS |
| GATAGATGATGACAGTTTAG+TGG | 0.378128 | 8.2:-21941175 | None:intergenic |
| TGATACCATTAGGCAATTAG+AGG | 0.378401 | 8.2:+21941366 | MS.gene011512:CDS |
| TTCAGGGAAACAGTCTCCTT+CGG | 0.379577 | 8.2:+21944993 | MS.gene011512:intron |
| AATATAATTTGCCAAGGATA+AGG | 0.381936 | 8.2:-21946142 | None:intergenic |
| ATTGGCTCATTAAAGTATAC+TGG | 0.382729 | 8.2:-21944269 | None:intergenic |
| GATGGATGCCCAGATATATT+TGG | 0.388595 | 8.2:+21948732 | MS.gene011512:CDS |
| TTCGAGGGCGAGGAGTTTAC+CGG | 0.392882 | 8.2:+21939249 | MS.gene011512:CDS |
| TTCTCTAAGTGCCGTTGATC+AGG | 0.393417 | 8.2:-21947644 | None:intergenic |
| TCAGGGAAACAGTCTCCTTC+GGG | 0.396439 | 8.2:+21944994 | MS.gene011512:intron |
| TCCTTCAGTTGTTCATCTAA+AGG | 0.398048 | 8.2:+21939564 | MS.gene011512:CDS |
| TTCATTTGAGAACTGATTCA+AGG | 0.398225 | 8.2:+21941101 | MS.gene011512:CDS |
| ACTTGAGCCTGCAGGAATAC+TGG | 0.404656 | 8.2:-21946202 | None:intergenic |
| AATGGAACGTTTCGATATAC+TGG | 0.407910 | 8.2:+21948675 | MS.gene011512:CDS |
| TTTCGCAAAGAAGGTGAAAA+TGG | 0.411519 | 8.2:+21948657 | MS.gene011512:CDS |
| ATGGAACATTGTTGTGGAAA+AGG | 0.414030 | 8.2:+21947353 | MS.gene011512:CDS |
| TTGCCGGAGTTCTTTACAAA+TGG | 0.416794 | 8.2:+21939320 | MS.gene011512:CDS |
| AAAGATTACACTTCGTCAAA+TGG | 0.418594 | 8.2:+21947334 | MS.gene011512:CDS |
| CCTCATTATACCTTTAGTCC+TGG | 0.419213 | 8.2:-21947445 | None:intergenic |
| CTCTTTGAACTTGAGCCTGC+AGG | 0.419501 | 8.2:-21946210 | None:intergenic |
| AGTTGATACAGATATATGAT+AGG | 0.421055 | 8.2:-21941206 | None:intergenic |
| TTCTCCTTCTCAACAGGATC+CGG | 0.423276 | 8.2:-21944182 | None:intergenic |
| CGCGAATCGTCTCGCCAGAA+TGG | 0.431637 | 8.2:+21939480 | MS.gene011512:CDS |
| CCAATGAGATGCAGCACAAC+GGG | 0.432925 | 8.2:-21939177 | None:intergenic |
| TCTAGGGTCAGAACTCCAAC+TGG | 0.434657 | 8.2:-21945972 | None:intergenic |
| CTTTCTTCTAATTAGGTGAC+TGG | 0.437943 | 8.2:+21947214 | MS.gene011512:intron |
| ATTCTCCGGTGAACGGATCT+TGG | 0.438401 | 8.2:-21939407 | None:intergenic |
| CTCATTATACCTTTAGTCCT+GGG | 0.439634 | 8.2:-21947444 | None:intergenic |
| TGTTAGTCAAGGCATTGATA+TGG | 0.441535 | 8.2:+21944088 | MS.gene011512:CDS |
| ACGCCCTTCTCCTTCTCAAC+AGG | 0.442450 | 8.2:-21944188 | None:intergenic |
| AATTACCTCTAATTGCCTAA+TGG | 0.446236 | 8.2:-21941371 | None:intergenic |
| ATCAACGGCACTTAGAGAAT+GGG | 0.452974 | 8.2:+21947648 | MS.gene011512:CDS |
| AAGTTGTACCGAGTCAGATT+TGG | 0.457713 | 8.2:-21947388 | None:intergenic |
| CAATGATGTATGATGATTAT+GGG | 0.458008 | 8.2:+21944129 | MS.gene011512:CDS |
| TTTCACCATCATCAAACTCT+AGG | 0.460599 | 8.2:-21945989 | None:intergenic |
| GGAAAATGCAAGAAAATGGC+TGG | 0.461061 | 8.2:+21948622 | MS.gene011512:CDS |
| AAGCAGATCCCTCGGGTTCA+AGG | 0.463930 | 8.2:-21942880 | None:intergenic |
| TCCTCTACCTTCACAATGGC+AGG | 0.464356 | 8.2:-21945886 | None:intergenic |
| AAGCAAGAGCTGTAGGATCA+TGG | 0.469213 | 8.2:+21948709 | MS.gene011512:CDS |
| ATATGCTCTATCCAGAAGAT+AGG | 0.472527 | 8.2:-21944330 | None:intergenic |
| CATTGATATGGAAAATAGTC+AGG | 0.474331 | 8.2:+21944100 | MS.gene011512:CDS |
| TGTAGCGTGGATACAAGCTT+TGG | 0.474954 | 8.2:+21941132 | MS.gene011512:CDS |
| AAGAAGCGAACTCCTTTGTC+AGG | 0.476918 | 8.2:-21945121 | None:intergenic |
| AGCCCTTTAATCCCTTGTTA+GGG | 0.477745 | 8.2:+21945077 | MS.gene011512:CDS |
| ACAATATATAACCTTATCCT+TGG | 0.478634 | 8.2:+21946131 | MS.gene011512:CDS |
| GATCAACGGCACTTAGAGAA+TGG | 0.479149 | 8.2:+21947647 | MS.gene011512:CDS |
| AAAGTACGCCATTGCGGAGG+AGG | 0.479447 | 8.2:-21939378 | None:intergenic |
| CATTGTTGTGGAAAAGGACT+AGG | 0.483064 | 8.2:+21947359 | MS.gene011512:CDS |
| ATTCTTTGTCAAGAACGATC+TGG | 0.485342 | 8.2:+21941337 | MS.gene011512:CDS |
| AAATTATATTGTGATCATCA+TGG | 0.485557 | 8.2:+21946155 | MS.gene011512:CDS |
| CCCGTTGTGCTGCATCTCAT+TGG | 0.486703 | 8.2:+21939177 | MS.gene011512:CDS |
| GTCGTGCAAAGCAGATCCCT+CGG | 0.495137 | 8.2:-21942888 | None:intergenic |
| CCTAGGTGGTTTCGCAAAGA+AGG | 0.495193 | 8.2:+21948648 | MS.gene011512:CDS |
| TGCATCTCATTGGAGAGTCC+AGG | 0.495599 | 8.2:+21939187 | MS.gene011512:CDS |
| GAGAACAGATTGAGATTCTC+CGG | 0.501584 | 8.2:-21939421 | None:intergenic |
| GGTGAATTACTTCCGATCCC+TGG | 0.503690 | 8.2:-21939205 | None:intergenic |
| GAATACCAATTAACAAAGAA+TGG | 0.504184 | 8.2:+21942914 | MS.gene011512:CDS |
| CATACACGGCTGCACTTTCG+AGG | 0.505626 | 8.2:+21939233 | MS.gene011512:CDS |
| CATTCTGGCGAGACGATTCG+CGG | 0.507691 | 8.2:-21939479 | None:intergenic |
| GGATTTGTTGAAGATACAAT+GGG | 0.510337 | 8.2:+21947235 | MS.gene011512:CDS |
| TGAGCTTACCCCAGGACTAA+AGG | 0.510721 | 8.2:+21947435 | MS.gene011512:CDS |
| AACTCCTTTGTCAGGAAAGT+CGG | 0.512877 | 8.2:-21945113 | None:intergenic |
| TTCGTAAGTTTCCCCTAACA+AGG | 0.521697 | 8.2:-21945089 | None:intergenic |
| TTGTACCGAGTCAGATTTGG+TGG | 0.524448 | 8.2:-21947385 | None:intergenic |
| ATTGCGGAGGAGGAACCATC+GGG | 0.525539 | 8.2:-21939368 | None:intergenic |
| GAAGGAGAAGAAGATGAAGA+AGG | 0.525636 | 8.2:-21939547 | None:intergenic |
| AAGAAAATGGCTGGGAACCT+AGG | 0.525750 | 8.2:+21948631 | MS.gene011512:CDS |
| AATCCTCAAAACATTTCTGA+AGG | 0.528626 | 8.2:-21944298 | None:intergenic |
| AGGTCTCAGCCTGGAATCCG+TGG | 0.532533 | 8.2:-21947624 | None:intergenic |
| GAAATTCACCAAATATATCT+GGG | 0.536305 | 8.2:-21948740 | None:intergenic |
| TAAGAAACGTTTGCTTGAAG+AGG | 0.539228 | 8.2:+21941237 | MS.gene011512:CDS |
| CATTGCGGAGGAGGAACCAT+CGG | 0.540290 | 8.2:-21939369 | None:intergenic |
| CCGTTGATCAGGTCTCAGCC+TGG | 0.541115 | 8.2:-21947633 | None:intergenic |
| AATTATATTGTGATCATCAT+GGG | 0.542313 | 8.2:+21946156 | MS.gene011512:CDS |
| AGCAAGAGCTGTAGGATCAT+GGG | 0.544115 | 8.2:+21948710 | MS.gene011512:CDS |
| TTACTCCAAGATCCGTTCAC+CGG | 0.545478 | 8.2:+21939402 | MS.gene011512:CDS |
| CTAGGGCGTGGAAAATATAG+TGG | 0.547554 | 8.2:+21942947 | MS.gene011512:CDS |
| CGGCTGCACTTTCGAGGGCG+AGG | 0.549758 | 8.2:+21939239 | MS.gene011512:CDS |
| ACCTTTAGATGAACAACTGA+AGG | 0.550447 | 8.2:-21939565 | None:intergenic |
| CGTCAAATGGAACATTGTTG+TGG | 0.552399 | 8.2:+21947347 | MS.gene011512:CDS |
| AGTCCATTTGTAAAGAACTC+CGG | 0.552798 | 8.2:-21939323 | None:intergenic |
| GGACTAATTACGGCAAAGGA+TGG | 0.555562 | 8.2:+21939341 | MS.gene011512:CDS |
| AAGAAACGTTTGCTTGAAGA+GGG | 0.556527 | 8.2:+21941238 | MS.gene011512:CDS |
| GTTGATACAGATATATGATA+GGG | 0.559476 | 8.2:-21941205 | None:intergenic |
| CTGGATAGAGCATATGAGCA+TGG | 0.561758 | 8.2:+21944338 | MS.gene011512:CDS |
| CAGCCACATTATTTGGCAAG+TGG | 0.563225 | 8.2:+21947266 | MS.gene011512:CDS |
| TCTTGACCGAAATCCTCGCC+AGG | 0.567709 | 8.2:+21946241 | MS.gene011512:CDS |
| TACCGAGTCAGATTTGGTGG+TGG | 0.569125 | 8.2:-21947382 | None:intergenic |
| TCGTGCAAAGCAGATCCCTC+GGG | 0.569487 | 8.2:-21942887 | None:intergenic |
| AAAGGAGAAGCTTCCACCCA+CGG | 0.570119 | 8.2:+21947607 | MS.gene011512:intron |
| GACTGCATTGTTCGCCGTGG+AGG | 0.570257 | 8.2:+21939283 | MS.gene011512:CDS |
| GTTGGAAAAGAGACAAAGAA+TGG | 0.571522 | 8.2:+21947703 | MS.gene011512:CDS |
| TTCACCATCATCAAACTCTA+GGG | 0.571647 | 8.2:-21945988 | None:intergenic |
| CGATGGTTCCTCCTCCGCAA+TGG | 0.572855 | 8.2:+21939370 | MS.gene011512:CDS |
| TATTGGGAAGCAAGAGCTGT+AGG | 0.573587 | 8.2:+21948702 | MS.gene011512:CDS |
| AGAGAATGGGGAATTTGAGA+AGG | 0.574961 | 8.2:+21947661 | MS.gene011512:CDS |
| AGCCACATTATTTGGCAAGT+GGG | 0.575209 | 8.2:+21947267 | MS.gene011512:CDS |
| CAATGGCAGGCAACCACAGT+TGG | 0.575286 | 8.2:-21945873 | None:intergenic |
| TCAATTCAACTTGACCCAGT+TGG | 0.576089 | 8.2:+21945957 | MS.gene011512:CDS |
| GCCCTTTAATCCCTTGTTAG+GGG | 0.581179 | 8.2:+21945078 | MS.gene011512:CDS |
| GCATCTCATTGGAGAGTCCA+GGG | 0.581823 | 8.2:+21939188 | MS.gene011512:CDS |
| TGGATTTGTTGAAGATACAA+TGG | 0.582114 | 8.2:+21947234 | MS.gene011512:CDS |
| ACACTGAATGAGCTTACCCC+AGG | 0.584389 | 8.2:+21947427 | MS.gene011512:CDS |
| TGGATAGAGCATATGAGCAT+GGG | 0.584720 | 8.2:+21944339 | MS.gene011512:CDS |
| GCCAGAATGGATAGAGACGC+CGG | 0.586219 | 8.2:+21939493 | MS.gene011512:CDS |
| GCCATTGTGAAGGTAGAGGA+TGG | 0.586276 | 8.2:+21945889 | MS.gene011512:CDS |
| CTGACCCTAGAGTTTGATGA+TGG | 0.588643 | 8.2:+21945984 | MS.gene011512:CDS |
| GTAATCGCCAGTATTCCTGC+AGG | 0.591049 | 8.2:+21946195 | MS.gene011512:CDS |
| GTCAATGATCAAAGACAATG+TGG | 0.591275 | 8.2:+21944220 | MS.gene011512:CDS |
| AAATATGGAGAAACAAAGGT+TGG | 0.591541 | 8.2:+21947685 | MS.gene011512:CDS |
| GGCAGGCAACCACAGTTGGA+TGG | 0.595585 | 8.2:-21945869 | None:intergenic |
| AAATGGACTAATTACGGCAA+AGG | 0.595813 | 8.2:+21939337 | MS.gene011512:CDS |
| AAGGTTTATGACTCTTCTGA+CGG | 0.598402 | 8.2:-21939528 | None:intergenic |
| GCCTGCCATTGTGAAGGTAG+AGG | 0.598638 | 8.2:+21945885 | MS.gene011512:CDS |
| CCTTCTTTGCGAAACCACCT+AGG | 0.602307 | 8.2:-21948648 | None:intergenic |
| GGAACGTTTCGATATACTGG+TGG | 0.603452 | 8.2:+21948678 | MS.gene011512:CDS |
| GCTTCCGGATCCTGTTGAGA+AGG | 0.604677 | 8.2:+21944178 | MS.gene011512:CDS |
| TCATTGGAGAGTCCAGGGAT+CGG | 0.605015 | 8.2:+21939193 | MS.gene011512:CDS |
| AGTGCAGCCGTGTATGACTC+CGG | 0.606485 | 8.2:-21939226 | None:intergenic |
| GGTAAGCTCATTCAGTGTGA+TGG | 0.607115 | 8.2:-21947422 | None:intergenic |
| GATTGAGATTCTCCGGTGAA+CGG | 0.609231 | 8.2:-21939414 | None:intergenic |
| GGTATCCTCAAATAGTAAGA+CGG | 0.610160 | 8.2:+21944150 | MS.gene011512:CDS |
| GAAAATGCAAGAAAATGGCT+GGG | 0.611031 | 8.2:+21948623 | MS.gene011512:CDS |
| GATCACAATATAATTTGCCA+AGG | 0.612712 | 8.2:-21946148 | None:intergenic |
| TGAAATATTTCAGTGGAGCA+AGG | 0.613705 | 8.2:+21946007 | MS.gene011512:CDS |
| ATCCTCAAAACATTTCTGAA+GGG | 0.613815 | 8.2:-21944297 | None:intergenic |
| GCGAGGAGTTTACCGGCGAG+TGG | 0.614782 | 8.2:+21939256 | MS.gene011512:CDS |
| GGATCCTGTTGAGAAGGAGA+AGG | 0.614967 | 8.2:+21944184 | MS.gene011512:CDS |
| AGGGATCGGAAGTAATTCAC+CGG | 0.615080 | 8.2:+21939207 | MS.gene011512:CDS |
| AAGCTTGTATCCACGCTACA+CGG | 0.615200 | 8.2:-21941129 | None:intergenic |
| GCTCATTAAAGTATACTGGA+AGG | 0.617576 | 8.2:-21944265 | None:intergenic |
| TCTGGATATGCATCATCAGA+AGG | 0.618172 | 8.2:+21945043 | MS.gene011512:CDS |
| TCATTATACCTTTAGTCCTG+GGG | 0.620951 | 8.2:-21947443 | None:intergenic |
| GTAAAGAACTCCGGCAACCG+TGG | 0.621812 | 8.2:-21939314 | None:intergenic |
| GATCCTGTTGAGAAGGAGAA+GGG | 0.622608 | 8.2:+21944185 | MS.gene011512:CDS |
| GGCAGCTAACCTTGAACCCG+AGG | 0.623759 | 8.2:+21942871 | MS.gene011512:intron |
| GGCCACCACCAAATCTGACT+CGG | 0.623879 | 8.2:+21947380 | MS.gene011512:CDS |
| TCCAATGAGATGCAGCACAA+CGG | 0.624692 | 8.2:-21939178 | None:intergenic |
| GGTCTCAGCCTGGAATCCGT+GGG | 0.626857 | 8.2:-21947623 | None:intergenic |
| AGGCAAATATGGAGAAACAA+AGG | 0.630247 | 8.2:+21947681 | MS.gene011512:CDS |
| CAAGGAAAGACCGTGTAGCG+TGG | 0.631619 | 8.2:+21941119 | MS.gene011512:CDS |
| CCGTGGAGGATCAGAAGCCA+CGG | 0.633089 | 8.2:+21939297 | MS.gene011512:CDS |
| CTCAGCCTGGAATCCGTGGG+TGG | 0.633274 | 8.2:-21947620 | None:intergenic |
| TAGCAGTGAAAATCTTGTGA+AGG | 0.636958 | 8.2:+21941261 | MS.gene011512:CDS |
| TCTGCGGAAGCTGTTAGTCA+AGG | 0.641099 | 8.2:+21944077 | MS.gene011512:CDS |
| TCGTAAGTTTCCCCTAACAA+GGG | 0.642972 | 8.2:-21945088 | None:intergenic |
| AGGAATACTGGCGATTACCA+CGG | 0.645278 | 8.2:-21946190 | None:intergenic |
| ATGCAGTCAGATCCACTCGC+CGG | 0.646020 | 8.2:-21939268 | None:intergenic |
| GTGGTTGCCTGCCATTGTGA+AGG | 0.649232 | 8.2:+21945879 | MS.gene011512:CDS |
| TAATTCACCGGAGTCATACA+CGG | 0.650053 | 8.2:+21939219 | MS.gene011512:CDS |
| ATGATGGTGAAATATTTCAG+TGG | 0.650358 | 8.2:+21946000 | MS.gene011512:CDS |
| CATGGGAATATGGAAATCCG+TGG | 0.651698 | 8.2:+21946173 | MS.gene011512:CDS |
| GTAGAACCTCCTACCTGGCG+AGG | 0.655780 | 8.2:-21946254 | None:intergenic |
| CTAGGGTCAGAACTCCAACT+GGG | 0.658230 | 8.2:-21945971 | None:intergenic |
| AGTAAGAAAGTACGCCATTG+CGG | 0.662553 | 8.2:-21939384 | None:intergenic |
| CCAGGCTGAGACCTGATCAA+CGG | 0.663381 | 8.2:+21947633 | MS.gene011512:CDS |
| TGCATATCCAGAAACAGCAA+AGG | 0.663498 | 8.2:-21945032 | None:intergenic |
| GCAAAGGATGGAGATCCCGA+TGG | 0.666798 | 8.2:+21939353 | MS.gene011512:CDS |
| TCAACGGCACTTAGAGAATG+GGG | 0.669553 | 8.2:+21947649 | MS.gene011512:CDS |
| CAGCAACGTTCAATGCCCGA+AGG | 0.671551 | 8.2:-21945009 | None:intergenic |
| AAAATGGCTGGGAACCTAGG+TGG | 0.671755 | 8.2:+21948634 | MS.gene011512:CDS |
| AAGAAAGTACGCCATTGCGG+AGG | 0.672163 | 8.2:-21939381 | None:intergenic |
| ATCCCACTTGCCAAATAATG+TGG | 0.674658 | 8.2:-21947269 | None:intergenic |
| ATACACGGCTGCACTTTCGA+GGG | 0.677693 | 8.2:+21939234 | MS.gene011512:CDS |
| CCGTGGCTTCTGATCCTCCA+CGG | 0.679159 | 8.2:-21939297 | None:intergenic |
| ATATATCTGTATCAACTGAG+AGG | 0.679661 | 8.2:+21941212 | MS.gene011512:CDS |
| ATTGTGAAGGTAGAGGATGG+AGG | 0.682063 | 8.2:+21945892 | MS.gene011512:CDS |
| AGAGCTGTAGGATCATGGGA+TGG | 0.683308 | 8.2:+21948714 | MS.gene011512:CDS |
| TCTGACTGCATTGTTCGCCG+TGG | 0.685403 | 8.2:+21939280 | MS.gene011512:CDS |
| GCAGCTAACCTTGAACCCGA+GGG | 0.688367 | 8.2:+21942872 | MS.gene011512:CDS |
| TCCATCCTCTACCTTCACAA+TGG | 0.688384 | 8.2:-21945890 | None:intergenic |
| GCTATCAGAATGCAGTACAA+CGG | 0.696464 | 8.2:+21943914 | MS.gene011512:intron |
| TCAATGATCAAAGACAATGT+GGG | 0.707465 | 8.2:+21944221 | MS.gene011512:CDS |
| GAAGCCGACTTTCCTGACAA+AGG | 0.708212 | 8.2:+21945109 | MS.gene011512:CDS |
| GGTTAGTCACCATCCAACTG+TGG | 0.711984 | 8.2:+21945860 | MS.gene011512:intron |
| AAATCGAGTGAACATGTCTG+CGG | 0.724062 | 8.2:+21944061 | MS.gene011512:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 21939157 | 21948797 | 21939157 | ID=MS.gene011512 |
| chr8.2 | mRNA | 21939157 | 21948797 | 21939157 | ID=MS.gene011512.t1;Parent=MS.gene011512 |
| chr8.2 | exon | 21939157 | 21939585 | 21939157 | ID=MS.gene011512.t1.exon1;Parent=MS.gene011512.t1 |
| chr8.2 | CDS | 21939157 | 21939585 | 21939157 | ID=cds.MS.gene011512.t1;Parent=MS.gene011512.t1 |
| chr8.2 | exon | 21941034 | 21941387 | 21941034 | ID=MS.gene011512.t1.exon2;Parent=MS.gene011512.t1 |
| chr8.2 | CDS | 21941034 | 21941387 | 21941034 | ID=cds.MS.gene011512.t1;Parent=MS.gene011512.t1 |
| chr8.2 | exon | 21942872 | 21942968 | 21942872 | ID=MS.gene011512.t1.exon3;Parent=MS.gene011512.t1 |
| chr8.2 | CDS | 21942872 | 21942968 | 21942872 | ID=cds.MS.gene011512.t1;Parent=MS.gene011512.t1 |
| chr8.2 | exon | 21943922 | 21944367 | 21943922 | ID=MS.gene011512.t1.exon4;Parent=MS.gene011512.t1 |
| chr8.2 | CDS | 21943922 | 21944367 | 21943922 | ID=cds.MS.gene011512.t1;Parent=MS.gene011512.t1 |
| chr8.2 | exon | 21944998 | 21945153 | 21944998 | ID=MS.gene011512.t1.exon5;Parent=MS.gene011512.t1 |
| chr8.2 | CDS | 21944998 | 21945153 | 21944998 | ID=cds.MS.gene011512.t1;Parent=MS.gene011512.t1 |
| chr8.2 | exon | 21945861 | 21946028 | 21945861 | ID=MS.gene011512.t1.exon6;Parent=MS.gene011512.t1 |
| chr8.2 | CDS | 21945861 | 21946028 | 21945861 | ID=cds.MS.gene011512.t1;Parent=MS.gene011512.t1 |
| chr8.2 | exon | 21946122 | 21946262 | 21946122 | ID=MS.gene011512.t1.exon7;Parent=MS.gene011512.t1 |
| chr8.2 | CDS | 21946122 | 21946262 | 21946122 | ID=cds.MS.gene011512.t1;Parent=MS.gene011512.t1 |
| chr8.2 | exon | 21947229 | 21947456 | 21947229 | ID=MS.gene011512.t1.exon8;Parent=MS.gene011512.t1 |
| chr8.2 | CDS | 21947229 | 21947456 | 21947229 | ID=cds.MS.gene011512.t1;Parent=MS.gene011512.t1 |
| chr8.2 | exon | 21947611 | 21947724 | 21947611 | ID=MS.gene011512.t1.exon9;Parent=MS.gene011512.t1 |
| chr8.2 | CDS | 21947611 | 21947724 | 21947611 | ID=cds.MS.gene011512.t1;Parent=MS.gene011512.t1 |
| chr8.2 | exon | 21948618 | 21948797 | 21948618 | ID=MS.gene011512.t1.exon10;Parent=MS.gene011512.t1 |
| chr8.2 | CDS | 21948618 | 21948797 | 21948618 | ID=cds.MS.gene011512.t1;Parent=MS.gene011512.t1 |
| Gene Sequence |
| Protein sequence |
