Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81622.t1 | XP_027187513.1 | 63.2 | 711 | 208 | 8 | 5 | 712 | 6 | 665 | 1.40E-185 | 659.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81622.t1 | Q8LPS2 | 26.7 | 266 | 141 | 9 | 75 | 326 | 93 | 318 | 1.8e-08 | 62.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81622.t1 | A0A3Q7XLL0 | 63.2 | 711 | 208 | 8 | 5 | 712 | 6 | 665 | 1.0e-185 | 659.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81622.t1 | MTR_5g085480 | 68.227 | 705 | 203 | 8 | 28 | 716 | 2 | 701 | 0.0 | 887 |
MS.gene81622.t1 | MTR_5g085830 | 61.744 | 711 | 241 | 12 | 4 | 707 | 21 | 707 | 0.0 | 825 |
MS.gene81622.t1 | MTR_5g085810 | 59.580 | 715 | 236 | 11 | 27 | 705 | 36 | 733 | 0.0 | 772 |
MS.gene81622.t1 | MTR_5g085480 | 67.096 | 544 | 161 | 6 | 188 | 716 | 1 | 541 | 0.0 | 669 |
MS.gene81622.t1 | MTR_2g033050 | 81.818 | 396 | 68 | 3 | 75 | 467 | 1 | 395 | 0.0 | 665 |
MS.gene81622.t1 | MTR_5g085500 | 61.250 | 480 | 104 | 8 | 300 | 712 | 1 | 465 | 0.0 | 523 |
MS.gene81622.t1 | MTR_5g085490 | 72.727 | 286 | 74 | 3 | 2 | 285 | 9 | 292 | 1.15e-138 | 409 |
MS.gene81622.t1 | MTR_5g085440 | 59.544 | 351 | 76 | 7 | 368 | 716 | 79 | 365 | 2.80e-115 | 352 |
MS.gene81622.t1 | MTR_5g085440 | 82.911 | 158 | 27 | 0 | 2 | 159 | 3 | 160 | 2.12e-87 | 279 |
MS.gene81622.t1 | MTR_2g033045 | 76.754 | 228 | 27 | 3 | 484 | 711 | 23 | 224 | 3.09e-106 | 326 |
MS.gene81622.t1 | MTR_5g085520 | 70.707 | 198 | 56 | 2 | 82 | 277 | 1 | 198 | 2.19e-86 | 271 |
MS.gene81622.t1 | MTR_5g085530 | 78.082 | 73 | 15 | 1 | 279 | 350 | 1 | 73 | 9.27e-33 | 121 |
MS.gene81622.t1 | MTR_2g096190 | 26.915 | 457 | 277 | 15 | 235 | 671 | 63 | 482 | 2.18e-25 | 111 |
MS.gene81622.t1 | MTR_7g100390 | 28.442 | 443 | 266 | 12 | 235 | 657 | 46 | 457 | 3.89e-24 | 107 |
MS.gene81622.t1 | MTR_4g062100 | 26.126 | 444 | 277 | 13 | 235 | 657 | 67 | 480 | 3.69e-23 | 104 |
MS.gene81622.t1 | MTR_4g062100 | 24.695 | 328 | 193 | 9 | 114 | 439 | 28 | 303 | 9.17e-15 | 78.2 |
MS.gene81622.t1 | MTR_7g117620 | 25.957 | 470 | 291 | 15 | 227 | 677 | 67 | 498 | 6.53e-22 | 100 |
MS.gene81622.t1 | MTR_1g115575 | 24.516 | 465 | 312 | 14 | 235 | 690 | 128 | 562 | 9.03e-22 | 100 |
MS.gene81622.t1 | MTR_7g100430 | 22.843 | 591 | 341 | 18 | 114 | 690 | 65 | 554 | 3.65e-21 | 98.6 |
MS.gene81622.t1 | MTR_1g032100 | 25.000 | 508 | 318 | 18 | 228 | 716 | 47 | 510 | 5.45e-20 | 94.7 |
MS.gene81622.t1 | MTR_2g101310 | 23.094 | 446 | 264 | 14 | 277 | 659 | 145 | 574 | 8.89e-20 | 94.4 |
MS.gene81622.t1 | MTR_1g069110 | 25.130 | 386 | 247 | 9 | 286 | 648 | 30 | 396 | 2.66e-18 | 89.0 |
MS.gene81622.t1 | MTR_2g096760 | 34.132 | 167 | 98 | 5 | 277 | 434 | 18 | 181 | 1.26e-17 | 86.7 |
MS.gene81622.t1 | MTR_2g101320 | 23.222 | 478 | 292 | 14 | 234 | 650 | 100 | 563 | 1.79e-16 | 84.0 |
MS.gene81622.t1 | MTR_8g105260 | 22.970 | 431 | 252 | 13 | 242 | 657 | 102 | 467 | 3.75e-15 | 79.3 |
MS.gene81622.t1 | MTR_2g101310 | 24.561 | 285 | 191 | 9 | 277 | 553 | 145 | 413 | 3.16e-14 | 76.3 |
MS.gene81622.t1 | MTR_7g099580 | 29.101 | 189 | 122 | 6 | 242 | 420 | 12 | 198 | 1.69e-12 | 69.7 |
MS.gene81622.t1 | MTR_5g085560 | 40.496 | 121 | 46 | 5 | 473 | 573 | 2 | 116 | 5.06e-12 | 64.3 |
MS.gene81622.t1 | MTR_7g099570 | 24.756 | 307 | 209 | 9 | 242 | 537 | 9 | 304 | 1.14e-11 | 68.6 |
MS.gene81622.t1 | MTR_8g467780 | 29.189 | 185 | 109 | 5 | 289 | 455 | 62 | 242 | 8.19e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81622.t1 | AT4G03500 | 29.167 | 624 | 340 | 12 | 84 | 699 | 80 | 609 | 1.13e-64 | 226 |
MS.gene81622.t1 | AT4G03500 | 29.167 | 624 | 340 | 12 | 84 | 699 | 80 | 609 | 1.13e-64 | 226 |
MS.gene81622.t1 | AT4G03500 | 29.280 | 625 | 338 | 13 | 84 | 699 | 103 | 632 | 1.97e-64 | 226 |
MS.gene81622.t1 | AT1G03670 | 29.291 | 635 | 327 | 18 | 84 | 700 | 73 | 603 | 1.47e-62 | 220 |
MS.gene81622.t1 | AT4G03460 | 30.374 | 642 | 334 | 16 | 75 | 700 | 73 | 617 | 1.66e-60 | 215 |
MS.gene81622.t1 | AT4G03490 | 28.761 | 678 | 352 | 23 | 80 | 716 | 33 | 620 | 4.03e-58 | 208 |
MS.gene81622.t1 | AT4G03490 | 28.761 | 678 | 352 | 23 | 80 | 716 | 23 | 610 | 5.46e-58 | 207 |
MS.gene81622.t1 | AT4G03460 | 29.905 | 632 | 331 | 15 | 85 | 700 | 50 | 585 | 2.39e-57 | 205 |
MS.gene81622.t1 | AT4G03490 | 28.659 | 656 | 336 | 21 | 80 | 704 | 33 | 587 | 4.35e-56 | 204 |
MS.gene81622.t1 | AT4G03490 | 26.982 | 656 | 309 | 20 | 80 | 704 | 23 | 539 | 5.50e-48 | 180 |
MS.gene81622.t1 | AT4G03490 | 26.982 | 656 | 309 | 20 | 80 | 704 | 13 | 529 | 7.81e-48 | 180 |
MS.gene81622.t1 | AT4G03440 | 27.822 | 629 | 350 | 21 | 84 | 678 | 119 | 677 | 1.16e-41 | 162 |
MS.gene81622.t1 | AT4G03440 | 27.822 | 629 | 350 | 21 | 84 | 678 | 119 | 677 | 1.16e-41 | 162 |
MS.gene81622.t1 | AT4G03440 | 27.822 | 629 | 350 | 21 | 84 | 678 | 126 | 684 | 1.45e-41 | 162 |
MS.gene81622.t1 | AT4G03480 | 27.599 | 558 | 317 | 17 | 84 | 610 | 158 | 659 | 2.64e-37 | 149 |
MS.gene81622.t1 | AT4G03480 | 27.592 | 569 | 300 | 17 | 84 | 610 | 158 | 656 | 2.73e-37 | 149 |
MS.gene81622.t1 | AT4G03450 | 26.875 | 640 | 343 | 23 | 87 | 707 | 75 | 608 | 8.69e-36 | 144 |
MS.gene81622.t1 | AT4G14390 | 25.490 | 612 | 344 | 18 | 74 | 667 | 104 | 621 | 1.76e-35 | 143 |
MS.gene81622.t1 | AT4G14390 | 25.041 | 611 | 348 | 17 | 74 | 667 | 123 | 640 | 3.05e-35 | 143 |
MS.gene81622.t1 | AT4G14390 | 25.285 | 613 | 345 | 18 | 74 | 667 | 123 | 641 | 5.09e-35 | 142 |
MS.gene81622.t1 | AT4G03450 | 27.504 | 589 | 316 | 21 | 87 | 656 | 75 | 571 | 6.77e-35 | 141 |
MS.gene81622.t1 | AT4G03470 | 25.373 | 603 | 350 | 17 | 94 | 672 | 96 | 622 | 4.31e-30 | 127 |
MS.gene81622.t1 | AT4G05040 | 25.599 | 543 | 294 | 14 | 57 | 588 | 95 | 538 | 2.91e-27 | 117 |
MS.gene81622.t1 | AT4G05040 | 25.599 | 543 | 294 | 14 | 57 | 588 | 95 | 538 | 2.91e-27 | 117 |
MS.gene81622.t1 | AT4G05040 | 25.599 | 543 | 294 | 14 | 57 | 588 | 95 | 538 | 2.91e-27 | 117 |
MS.gene81622.t1 | AT4G05040 | 25.599 | 543 | 294 | 14 | 57 | 588 | 95 | 538 | 2.91e-27 | 117 |
MS.gene81622.t1 | AT4G05040 | 25.599 | 543 | 294 | 14 | 57 | 588 | 95 | 538 | 2.91e-27 | 117 |
MS.gene81622.t1 | AT4G05040 | 25.599 | 543 | 294 | 14 | 57 | 588 | 95 | 538 | 2.91e-27 | 117 |
MS.gene81622.t1 | AT4G05040 | 25.599 | 543 | 294 | 14 | 57 | 588 | 95 | 538 | 2.91e-27 | 117 |
MS.gene81622.t1 | AT4G14390 | 26.598 | 391 | 230 | 11 | 74 | 453 | 104 | 448 | 1.37e-25 | 112 |
MS.gene81622.t1 | AT3G12360 | 24.696 | 494 | 316 | 17 | 234 | 715 | 113 | 562 | 1.30e-23 | 106 |
MS.gene81622.t1 | AT3G12360 | 24.696 | 494 | 316 | 17 | 234 | 715 | 125 | 574 | 1.37e-23 | 106 |
MS.gene81622.t1 | AT5G02620 | 26.813 | 455 | 286 | 15 | 235 | 668 | 53 | 481 | 3.76e-23 | 104 |
MS.gene81622.t1 | AT5G02620 | 26.813 | 455 | 286 | 15 | 235 | 668 | 53 | 481 | 3.76e-23 | 104 |
MS.gene81622.t1 | AT5G02620 | 26.813 | 455 | 286 | 15 | 235 | 668 | 53 | 481 | 3.76e-23 | 104 |
MS.gene81622.t1 | AT5G60070 | 24.838 | 463 | 290 | 12 | 235 | 673 | 70 | 498 | 8.72e-23 | 103 |
MS.gene81622.t1 | AT4G14400 | 26.396 | 394 | 229 | 12 | 75 | 453 | 27 | 374 | 1.06e-22 | 103 |
MS.gene81622.t1 | AT4G14400 | 26.396 | 394 | 229 | 12 | 75 | 453 | 27 | 374 | 1.06e-22 | 103 |
MS.gene81622.t1 | AT4G14400 | 26.904 | 394 | 227 | 13 | 75 | 453 | 93 | 440 | 1.08e-22 | 103 |
MS.gene81622.t1 | AT2G31820 | 26.374 | 455 | 273 | 14 | 242 | 672 | 193 | 609 | 1.62e-22 | 103 |
MS.gene81622.t1 | AT5G54710 | 23.267 | 606 | 376 | 17 | 84 | 650 | 19 | 574 | 4.12e-21 | 98.6 |
MS.gene81622.t1 | AT5G02620 | 25.630 | 476 | 288 | 16 | 235 | 668 | 53 | 504 | 4.87e-20 | 94.7 |
MS.gene81622.t1 | AT5G02620 | 25.630 | 476 | 288 | 16 | 235 | 668 | 53 | 504 | 4.87e-20 | 94.7 |
MS.gene81622.t1 | AT5G54710 | 24.074 | 486 | 307 | 14 | 177 | 650 | 94 | 529 | 1.22e-19 | 94.0 |
MS.gene81622.t1 | AT3G09550 | 22.852 | 582 | 352 | 17 | 114 | 690 | 92 | 581 | 4.42e-19 | 92.0 |
MS.gene81622.t1 | AT3G09550 | 22.852 | 582 | 352 | 17 | 114 | 690 | 85 | 574 | 4.69e-19 | 92.0 |
MS.gene81622.t1 | AT3G09550 | 22.852 | 582 | 352 | 17 | 114 | 690 | 85 | 574 | 4.69e-19 | 92.0 |
MS.gene81622.t1 | AT5G50140 | 23.729 | 472 | 284 | 12 | 277 | 680 | 34 | 497 | 4.99e-17 | 85.5 |
MS.gene81622.t1 | AT2G01680 | 23.303 | 442 | 287 | 15 | 235 | 657 | 56 | 464 | 1.22e-16 | 84.0 |
MS.gene81622.t1 | AT1G05640 | 25.397 | 441 | 266 | 14 | 242 | 657 | 157 | 559 | 1.63e-16 | 84.0 |
MS.gene81622.t1 | AT1G07710 | 24.569 | 464 | 300 | 11 | 235 | 679 | 63 | 495 | 2.59e-16 | 83.2 |
MS.gene81622.t1 | AT1G07710 | 24.569 | 464 | 300 | 11 | 235 | 679 | 63 | 495 | 2.59e-16 | 83.2 |
MS.gene81622.t1 | AT2G24600 | 23.518 | 523 | 307 | 15 | 177 | 664 | 63 | 527 | 9.82e-16 | 81.6 |
MS.gene81622.t1 | AT2G24600 | 23.518 | 523 | 307 | 15 | 177 | 664 | 63 | 527 | 9.82e-16 | 81.6 |
MS.gene81622.t1 | AT1G34050 | 21.094 | 512 | 333 | 13 | 168 | 668 | 71 | 522 | 7.63e-14 | 75.5 |
MS.gene81622.t1 | AT5G51160 | 24.561 | 285 | 178 | 6 | 297 | 574 | 40 | 294 | 7.00e-13 | 72.0 |
MS.gene81622.t1 | AT2G28840 | 29.000 | 200 | 123 | 7 | 286 | 473 | 27 | 219 | 1.24e-12 | 71.2 |
MS.gene81622.t1 | AT2G24600 | 22.727 | 484 | 296 | 14 | 177 | 637 | 63 | 491 | 2.17e-12 | 70.9 |
MS.gene81622.t1 | AT2G24600 | 22.727 | 484 | 296 | 14 | 177 | 637 | 63 | 491 | 2.17e-12 | 70.9 |
MS.gene81622.t1 | AT1G10340 | 22.940 | 449 | 288 | 13 | 177 | 609 | 63 | 469 | 3.82e-12 | 70.1 |
MS.gene81622.t1 | AT4G19150 | 36.220 | 127 | 74 | 3 | 308 | 434 | 20 | 139 | 2.08e-11 | 65.1 |
MS.gene81622.t1 | AT1G10340 | 22.494 | 449 | 286 | 13 | 177 | 609 | 63 | 465 | 4.52e-11 | 66.6 |
MS.gene81622.t1 | AT1G14500 | 28.700 | 223 | 142 | 6 | 245 | 454 | 8 | 226 | 6.73e-11 | 65.5 |
Find 107 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GACTCTTCATCATAGTCTTT+TGG | 0.147288 | 5.1:-67394870 | None:intergenic |
TTGGTTGGCCAATGTATTTC+TGG | 0.152680 | 5.1:+67397555 | MS.gene81622:CDS |
TTCATTATCTTTGGCTTTCA+TGG | 0.158618 | 5.1:+67397501 | MS.gene81622:CDS |
CTTTACCTTGCGGTTGAAAA+TGG | 0.204724 | 5.1:+67395110 | MS.gene81622:CDS |
TCCATTGAATGGATCCAATT+TGG | 0.217296 | 5.1:-67395719 | None:intergenic |
TTCGGCTTAGCATCCTTCTT+AGG | 0.220969 | 5.1:-67395170 | None:intergenic |
TGCTCTCATTTCATTATCTT+TGG | 0.224162 | 5.1:+67397492 | MS.gene81622:CDS |
GTGCTACCATCATACTCTTT+TGG | 0.232922 | 5.1:+67397404 | MS.gene81622:CDS |
ACAATTCAAAGGGACAAATT+AGG | 0.261746 | 5.1:+67395830 | MS.gene81622:CDS |
ATTGTCAAATTCGCAACATT+TGG | 0.271652 | 5.1:-67394514 | None:intergenic |
CAAGAGCTGTTTCGTTGTTT+TGG | 0.276243 | 5.1:-67396171 | None:intergenic |
GGCCAATGTATTTCTGGTTA+TGG | 0.278360 | 5.1:+67397561 | MS.gene81622:CDS |
TTAAATTTGAACAAAAGTTT+TGG | 0.280811 | 5.1:-67394705 | None:intergenic |
AAAATCGTTATGCCGCTTCT+TGG | 0.295847 | 5.1:+67397466 | MS.gene81622:CDS |
TACTAGAAAACAAGCCAAAT+TGG | 0.300074 | 5.1:+67395705 | MS.gene81622:CDS |
CCATACGATGCTAGATGAAT+TGG | 0.301352 | 5.1:-67395860 | None:intergenic |
ACTTTGTTTCTCATCTGTTT+TGG | 0.312843 | 5.1:-67397179 | None:intergenic |
CTTCACATTGCATCAAACTA+TGG | 0.318717 | 5.1:+67395968 | MS.gene81622:CDS |
GTTAGAATACACTGAAAATA+AGG | 0.319526 | 5.1:+67394842 | MS.gene81622:CDS |
CACTTGCTTTGGAGTCAATA+TGG | 0.324717 | 5.1:-67397057 | None:intergenic |
CTTCATGATTGCTGCTACAT+CGG | 0.325972 | 5.1:-67395204 | None:intergenic |
TTATCTTTGGCTTTCATGGC+TGG | 0.329139 | 5.1:+67397505 | MS.gene81622:CDS |
AGAAAGAGTGAAACTTGATT+TGG | 0.333662 | 5.1:+67396144 | MS.gene81622:CDS |
TTTCATGTTTGTCCATTGAA+TGG | 0.371890 | 5.1:-67395730 | None:intergenic |
GAGTATGATGGTAGCACTAA+TGG | 0.379466 | 5.1:-67397398 | None:intergenic |
TGGAGTTTCAACAAATTTGT+TGG | 0.381612 | 5.1:+67394575 | MS.gene81622:CDS |
TCTTAATCATGCAAAGAAAT+CGG | 0.385880 | 5.1:+67395085 | MS.gene81622:CDS |
TGAATTTGAATCACTTGCTT+TGG | 0.388117 | 5.1:-67397068 | None:intergenic |
GAAGCATATCAATTGGTCTA+TGG | 0.390920 | 5.1:+67394555 | MS.gene81622:CDS |
TCAAGCATCTCTGTGGGATC+TGG | 0.393203 | 5.1:-67395923 | None:intergenic |
AGGTGACACTCCTTTGCATT+TGG | 0.395086 | 5.1:+67396069 | MS.gene81622:CDS |
GGATGCTGTCAAACTAATCT+TGG | 0.401663 | 5.1:+67395139 | MS.gene81622:CDS |
TTGTCAAATTCGCAACATTT+GGG | 0.406024 | 5.1:-67394513 | None:intergenic |
GAGGGTTCAATTTCAAGTTC+AGG | 0.407035 | 5.1:-67394471 | None:intergenic |
ATCCAGACAAATCTTCAGTT+TGG | 0.409058 | 5.1:-67395022 | None:intergenic |
GCTTAATGAAGCATATCAAT+TGG | 0.419437 | 5.1:+67394548 | MS.gene81622:CDS |
AATGTTTGCAGCATCTTACA+TGG | 0.427993 | 5.1:+67396984 | MS.gene81622:intron |
GCAGCATGTTTAGCTGTTCC+AGG | 0.429250 | 5.1:+67397292 | MS.gene81622:CDS |
ACTAAGTAGTACACAGTTGT+AGG | 0.432418 | 5.1:-67396109 | None:intergenic |
TCGGCTTAGCATCCTTCTTA+GGG | 0.438034 | 5.1:-67395169 | None:intergenic |
TAAGTGTTGAAACAATTGTA+AGG | 0.440585 | 5.1:-67397252 | None:intergenic |
CTTCATTACGCAGCATCTAC+AGG | 0.442175 | 5.1:+67395761 | MS.gene81622:CDS |
AGATTTGTCTGGATACTCAT+TGG | 0.451663 | 5.1:+67395031 | MS.gene81622:CDS |
TACCAAACTGAAGATTTGTC+TGG | 0.454936 | 5.1:+67395020 | MS.gene81622:CDS |
GAAGGTGTTGAATTATTACT+TGG | 0.460344 | 5.1:+67395791 | MS.gene81622:CDS |
GTGACAAGAGCAATATAAGC+AGG | 0.461304 | 5.1:+67394970 | MS.gene81622:CDS |
TTCATGATTGCTGCTACATC+GGG | 0.463315 | 5.1:-67395203 | None:intergenic |
AAGGAATGTTAGTAGTGAAA+AGG | 0.480134 | 5.1:+67394446 | MS.gene81622:CDS |
GCATCTACAGGTTATCTTGA+AGG | 0.481004 | 5.1:+67395773 | MS.gene81622:CDS |
CAAGGGTTAACACCTTGATC+AGG | 0.483796 | 5.1:-67397715 | None:intergenic |
GCCAAATTGGATCCATTCAA+TGG | 0.490408 | 5.1:+67395718 | MS.gene81622:CDS |
GTGAAGGAGAAGAATGTTCA+AGG | 0.492369 | 5.1:+67394918 | MS.gene81622:CDS |
CATACGATGCTAGATGAATT+GGG | 0.501488 | 5.1:-67395859 | None:intergenic |
GCAAATGCTGCACAATTCAA+AGG | 0.501880 | 5.1:+67395819 | MS.gene81622:CDS |
TGATAAATCATCTTTGAGAC+AGG | 0.508726 | 5.1:+67396219 | MS.gene81622:CDS |
ATCAAACTATGGAAAATATG+AGG | 0.510180 | 5.1:+67395979 | MS.gene81622:CDS |
GATGCGGCTTCATCTTGCAA+TGG | 0.516870 | 5.1:-67394423 | None:intergenic |
GGACTTGTTAAAATTTGTGA+AGG | 0.524947 | 5.1:+67394902 | MS.gene81622:CDS |
CTGATCAAGGTGTTAACCCT+TGG | 0.525291 | 5.1:+67397716 | MS.gene81622:CDS |
CTACATATTGCAGCTTGGTA+TGG | 0.527273 | 5.1:+67394645 | MS.gene81622:CDS |
ACATCGGGCGATAATCTGTT+CGG | 0.528388 | 5.1:-67395188 | None:intergenic |
CTTGGAGAATAGCCCTAAGA+AGG | 0.531650 | 5.1:+67395157 | MS.gene81622:CDS |
TATCACTTAAACTAAGACCA+AGG | 0.533605 | 5.1:-67397733 | None:intergenic |
TATCAGTGAACTCAGTTGGT+TGG | 0.544404 | 5.1:+67397540 | MS.gene81622:CDS |
CAAATGCTGCACAATTCAAA+GGG | 0.544446 | 5.1:+67395820 | MS.gene81622:CDS |
TGGACTGCACTTAAATCTGC+TGG | 0.547758 | 5.1:+67397004 | MS.gene81622:CDS |
GCAATCATGAAGCAGAATCA+AGG | 0.549271 | 5.1:+67395215 | MS.gene81622:CDS |
TGATGAAGAGTCAAATATGA+AGG | 0.550055 | 5.1:+67394881 | MS.gene81622:CDS |
CAGTTATCAGTGAACTCAGT+TGG | 0.550086 | 5.1:+67397536 | MS.gene81622:CDS |
CCAATTCATCTAGCATCGTA+TGG | 0.551447 | 5.1:+67395860 | MS.gene81622:CDS |
ACTGAAAGTAAACCTGATCA+AGG | 0.558900 | 5.1:+67397703 | MS.gene81622:CDS |
GTTTCACTCTTTCTTTGCCG+TGG | 0.559337 | 5.1:-67396135 | None:intergenic |
AATGACCTCAATGACTTCTG+AGG | 0.562524 | 5.1:-67394490 | None:intergenic |
TGCAAGATGAAGCCGCATCA+AGG | 0.570054 | 5.1:+67394427 | MS.gene81622:CDS |
CAAGTTACGCTAATATTGAA+CGG | 0.575982 | 5.1:+67394799 | MS.gene81622:CDS |
GGTTTGCTAGTTGATGATGA+TGG | 0.588055 | 5.1:-67397634 | None:intergenic |
TGTTGCCCAAAAGAGTATGA+TGG | 0.588494 | 5.1:-67397410 | None:intergenic |
GTAGATGCTGCGTAATGAAG+AGG | 0.589723 | 5.1:-67395758 | None:intergenic |
ATTCAATGGACAAACATGAA+AGG | 0.591966 | 5.1:+67395732 | MS.gene81622:CDS |
ATGAGAGCAATTCCAAGAAG+CGG | 0.595796 | 5.1:-67397478 | None:intergenic |
ATGACCTCAATGACTTCTGA+GGG | 0.600511 | 5.1:-67394489 | None:intergenic |
GCTGTTCCAGGTGAAGCAGA+AGG | 0.600903 | 5.1:+67397304 | MS.gene81622:CDS |
TGATGAATATAATGAAAGCA+TGG | 0.601952 | 5.1:-67397357 | None:intergenic |
TGCCATAACCAGAAATACAT+TGG | 0.602206 | 5.1:-67397563 | None:intergenic |
TATAATATGCCTCATCCAGA+GGG | 0.602495 | 5.1:+67394381 | None:intergenic |
ACTACTAACATTCCTTGATG+CGG | 0.604739 | 5.1:-67394439 | None:intergenic |
TGACAAGAGCAATATAAGCA+GGG | 0.607025 | 5.1:+67394971 | MS.gene81622:CDS |
TGAACCCTCAGAAGTCATTG+AGG | 0.619198 | 5.1:+67394485 | MS.gene81622:CDS |
TAATGAGAAATGTACCGCAA+TGG | 0.621995 | 5.1:-67397655 | None:intergenic |
AGTAGTACACAGTTGTAGGA+TGG | 0.631426 | 5.1:-67396105 | None:intergenic |
GATCTTGCAGCCAAATGCAA+AGG | 0.631460 | 5.1:-67396079 | None:intergenic |
AGAAGTGTCAAGCATCTCTG+TGG | 0.631679 | 5.1:-67395930 | None:intergenic |
ATCACTTAAACTAAGACCAA+GGG | 0.632741 | 5.1:-67397732 | None:intergenic |
GAAATCGGTACTTTACCTTG+CGG | 0.637275 | 5.1:+67395100 | MS.gene81622:CDS |
CAGTGCTACATATTGCAGCT+TGG | 0.640810 | 5.1:+67394640 | MS.gene81622:CDS |
TGCGGTTGAAAATGGAGACA+AGG | 0.642265 | 5.1:+67395118 | MS.gene81622:CDS |
GAAGTGTCAAGCATCTCTGT+GGG | 0.645090 | 5.1:-67395929 | None:intergenic |
GCATTACATGTTGCTGCAAG+AGG | 0.645771 | 5.1:+67394744 | MS.gene81622:CDS |
TTACATGTTGCTGCAAGAGG+TGG | 0.650910 | 5.1:+67394747 | MS.gene81622:CDS |
AAACTATGGAAAATATGAGG+TGG | 0.653988 | 5.1:+67395982 | MS.gene81622:CDS |
TTATAATATGCCTCATCCAG+AGG | 0.656293 | 5.1:+67394380 | None:intergenic |
GTGTACTACTTAGTTAACCA+CGG | 0.667091 | 5.1:+67396118 | MS.gene81622:CDS |
ATTCATCTAGCATCGTATGG+TGG | 0.672890 | 5.1:+67395863 | MS.gene81622:CDS |
AGGCAACACTATGTTACATG+AGG | 0.678880 | 5.1:+67394938 | MS.gene81622:CDS |
ACTTCTTCACTACTTCCACA+TGG | 0.680029 | 5.1:-67395886 | None:intergenic |
AGCATCGTATGGTGGCCATG+TGG | 0.685642 | 5.1:+67395871 | MS.gene81622:CDS |
CATCAACTAGCAAACCATTG+CGG | 0.724742 | 5.1:+67397641 | MS.gene81622:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GATTAAAAAAGTTTAATTTT+AGG | + | chr5.1:67396377-67396396 | MS.gene81622:intron | 10.0% |
!! | ATAAATCAAAAAGATAACAA+AGG | + | chr5.1:67396049-67396068 | MS.gene81622:CDS | 15.0% |
!! | ATATAAGTAGATTAAATGAA+TGG | + | chr5.1:67396309-67396328 | MS.gene81622:intron | 15.0% |
!!! | AGTGTTTAATTTTAAATGAA+TGG | + | chr5.1:67396419-67396438 | MS.gene81622:intron | 15.0% |
!!! | TTAAATTTGAACAAAAGTTT+TGG | - | chr5.1:67394708-67394727 | None:intergenic | 15.0% |
!!! | TTTAAAATTAAACACTTTAG+AGG | - | chr5.1:67396415-67396434 | None:intergenic | 15.0% |
!! | ATTGATTAAAGAACTTAACT+AGG | + | chr5.1:67396484-67396503 | MS.gene81622:intron | 20.0% |
!! | TCTATACACTAGTATATTTA+GGG | - | chr5.1:67396661-67396680 | None:intergenic | 20.0% |
!! | TTGATTAAAGAACTTAACTA+GGG | + | chr5.1:67396485-67396504 | MS.gene81622:intron | 20.0% |
!!! | AGTGAATATTTTATAACCTT+TGG | - | chr5.1:67395376-67395395 | None:intergenic | 20.0% |
!!! | CATCATTGTAAATTTGTTTT+AGG | + | chr5.1:67395590-67395609 | MS.gene81622:intron | 20.0% |
!!! | TCATTATCCTTATCTTTTTT+TGG | + | chr5.1:67397672-67397691 | MS.gene81622:CDS | 20.0% |
! | AACAAAAATTGAGACTCATA+TGG | + | chr5.1:67394611-67394630 | MS.gene81622:CDS | 25.0% |
! | AACTTAGGATTACTCTTATA+TGG | - | chr5.1:67396924-67396943 | None:intergenic | 25.0% |
! | ACAAAAAATAGATGCAACTT+AGG | - | chr5.1:67396939-67396958 | None:intergenic | 25.0% |
! | ATCAAACTATGGAAAATATG+AGG | + | chr5.1:67395979-67395998 | MS.gene81622:CDS | 25.0% |
! | CTCTATACACTAGTATATTT+AGG | - | chr5.1:67396662-67396681 | None:intergenic | 25.0% |
! | GTTAGAATACACTGAAAATA+AGG | + | chr5.1:67394842-67394861 | MS.gene81622:CDS | 25.0% |
! | TCATGCAAATTATCATTGTT+AGG | + | chr5.1:67395302-67395321 | MS.gene81622:intron | 25.0% |
! | TCTTAATCATGCAAAGAAAT+CGG | + | chr5.1:67395085-67395104 | MS.gene81622:CDS | 25.0% |
! | TGAACGGAATGATATAAAAA+TGG | + | chr5.1:67394815-67394834 | MS.gene81622:CDS | 25.0% |
! | TGACAAAAATCAAAAGTCTA+TGG | + | chr5.1:67396733-67396752 | MS.gene81622:intron | 25.0% |
! | TGATGAATATAATGAAAGCA+TGG | - | chr5.1:67397360-67397379 | None:intergenic | 25.0% |
!! | GAATATTTTATAACCTTTGG+AGG | - | chr5.1:67395373-67395392 | None:intergenic | 25.0% |
!!! | ACTTGCTAATAGCTTTTTAA+CGG | - | chr5.1:67394784-67394803 | None:intergenic | 25.0% |
!!! | TAAGTGTTGAAACAATTGTA+AGG | - | chr5.1:67397255-67397274 | None:intergenic | 25.0% |
AAACTATGGAAAATATGAGG+TGG | + | chr5.1:67395982-67396001 | MS.gene81622:CDS | 30.0% | |
AAGGAATGTTAGTAGTGAAA+AGG | + | chr5.1:67394446-67394465 | MS.gene81622:CDS | 30.0% | |
ACAATTCAAAGGGACAAATT+AGG | + | chr5.1:67395830-67395849 | MS.gene81622:CDS | 30.0% | |
AGAAAGAGTGAAACTTGATT+TGG | + | chr5.1:67396144-67396163 | MS.gene81622:CDS | 30.0% | |
AGGGTTAGAATGAGATAATA+TGG | - | chr5.1:67396642-67396661 | None:intergenic | 30.0% | |
ATTCAATGGACAAACATGAA+AGG | + | chr5.1:67395732-67395751 | MS.gene81622:CDS | 30.0% | |
ATTGTCAAATTCGCAACATT+TGG | - | chr5.1:67394517-67394536 | None:intergenic | 30.0% | |
CAAATTATCATTGTTAGGCA+GGG | + | chr5.1:67395307-67395326 | MS.gene81622:intron | 30.0% | |
CAAGTTACGCTAATATTGAA+CGG | + | chr5.1:67394799-67394818 | MS.gene81622:CDS | 30.0% | |
GCTTAATGAAGCATATCAAT+TGG | + | chr5.1:67394548-67394567 | MS.gene81622:CDS | 30.0% | |
GGAATGATATAAAAATGGCA+TGG | + | chr5.1:67394820-67394839 | MS.gene81622:CDS | 30.0% | |
TACTAGAAAACAAGCCAAAT+TGG | + | chr5.1:67395705-67395724 | MS.gene81622:CDS | 30.0% | |
TGAATTTGAATCACTTGCTT+TGG | - | chr5.1:67397071-67397090 | None:intergenic | 30.0% | |
TGATGAAGAGTCAAATATGA+AGG | + | chr5.1:67394881-67394900 | MS.gene81622:CDS | 30.0% | |
TGCTCTCATTTCATTATCTT+TGG | + | chr5.1:67397492-67397511 | MS.gene81622:CDS | 30.0% | |
TGGAGTTTCAACAAATTTGT+TGG | + | chr5.1:67394575-67394594 | MS.gene81622:CDS | 30.0% | |
TTAGAATGAGATAATATGGC+AGG | - | chr5.1:67396638-67396657 | None:intergenic | 30.0% | |
TTGTCAAATTCGCAACATTT+GGG | - | chr5.1:67394516-67394535 | None:intergenic | 30.0% | |
TTTCATGTTTGTCCATTGAA+TGG | - | chr5.1:67395733-67395752 | None:intergenic | 30.0% | |
! | ACTCTTCATCATAGTCTTTT+GGG | - | chr5.1:67394872-67394891 | None:intergenic | 30.0% |
! | CTAATAGCTTTTTAACGGTT+GGG | - | chr5.1:67394779-67394798 | None:intergenic | 30.0% |
! | GCAAAAAATAATTTTCCCTC+TGG | - | chr5.1:67394399-67394418 | None:intergenic | 30.0% |
!! | ACTTTGTTTCTCATCTGTTT+TGG | - | chr5.1:67397182-67397201 | None:intergenic | 30.0% |
!! | CTTAACTAGGGTTTTATCAT+TGG | + | chr5.1:67396497-67396516 | MS.gene81622:intron | 30.0% |
!! | GAAGGTGTTGAATTATTACT+TGG | + | chr5.1:67395791-67395810 | MS.gene81622:CDS | 30.0% |
!! | GGACTTGTTAAAATTTGTGA+AGG | + | chr5.1:67394902-67394921 | MS.gene81622:CDS | 30.0% |
!! | TGATAAATCATCTTTGAGAC+AGG | + | chr5.1:67396219-67396238 | MS.gene81622:CDS | 30.0% |
!! | TTCATTATCTTTGGCTTTCA+TGG | + | chr5.1:67397501-67397520 | MS.gene81622:CDS | 30.0% |
!!! | TCTAGTTTTTTGTCTTCATC+TGG | - | chr5.1:67397106-67397125 | None:intergenic | 30.0% |
!!! | TCTTCATCTGGTTTTGTTTT+TGG | - | chr5.1:67397094-67397113 | None:intergenic | 30.0% |
AATGTTTGCAGCATCTTACA+TGG | + | chr5.1:67396984-67397003 | MS.gene81622:intron | 35.0% | |
ACTAAGTAGTACACAGTTGT+AGG | - | chr5.1:67396112-67396131 | None:intergenic | 35.0% | |
ACTACTAACATTCCTTGATG+CGG | - | chr5.1:67394442-67394461 | None:intergenic | 35.0% | |
ACTGAAAGTAAACCTGATCA+AGG | + | chr5.1:67397703-67397722 | MS.gene81622:CDS | 35.0% | |
AGATTTGTCTGGATACTCAT+TGG | + | chr5.1:67395031-67395050 | MS.gene81622:CDS | 35.0% | |
ATCCAGACAAATCTTCAGTT+TGG | - | chr5.1:67395025-67395044 | None:intergenic | 35.0% | |
CAAATGCTGCACAATTCAAA+GGG | + | chr5.1:67395820-67395839 | MS.gene81622:CDS | 35.0% | |
CACAAGTACCCTAATAGTAT+GGG | - | chr5.1:67395637-67395656 | None:intergenic | 35.0% | |
CATACGATGCTAGATGAATT+GGG | - | chr5.1:67395862-67395881 | None:intergenic | 35.0% | |
CGTGATGCCAAAAAAAGATA+AGG | - | chr5.1:67397682-67397701 | None:intergenic | 35.0% | |
CTTCACATTGCATCAAACTA+TGG | + | chr5.1:67395968-67395987 | MS.gene81622:CDS | 35.0% | |
CTTCCACGATCACAAAATTA+TGG | + | chr5.1:67396763-67396782 | MS.gene81622:intron | 35.0% | |
GCAAATTATCATTGTTAGGC+AGG | + | chr5.1:67395306-67395325 | MS.gene81622:intron | 35.0% | |
GCATAAGACGATTGTATTGT+TGG | - | chr5.1:67395351-67395370 | None:intergenic | 35.0% | |
GTGTACTACTTAGTTAACCA+CGG | + | chr5.1:67396118-67396137 | MS.gene81622:CDS | 35.0% | |
TAATGAGAAATGTACCGCAA+TGG | - | chr5.1:67397658-67397677 | None:intergenic | 35.0% | |
TACCAAACTGAAGATTTGTC+TGG | + | chr5.1:67395020-67395039 | MS.gene81622:CDS | 35.0% | |
TCACAAGTACCCTAATAGTA+TGG | - | chr5.1:67395638-67395657 | None:intergenic | 35.0% | |
TCCATTGAATGGATCCAATT+TGG | - | chr5.1:67395722-67395741 | None:intergenic | 35.0% | |
TGACAAGAGCAATATAAGCA+GGG | + | chr5.1:67394971-67394990 | MS.gene81622:CDS | 35.0% | |
TGCCATAACCAGAAATACAT+TGG | - | chr5.1:67397566-67397585 | None:intergenic | 35.0% | |
! | AATAATTTTCCCTCTGGATG+AGG | - | chr5.1:67394393-67394412 | None:intergenic | 35.0% |
! | GAAGCATATCAATTGGTCTA+TGG | + | chr5.1:67394555-67394574 | MS.gene81622:CDS | 35.0% |
! | GACTCTTCATCATAGTCTTT+TGG | - | chr5.1:67394873-67394892 | None:intergenic | 35.0% |
! | GCTAATAGCTTTTTAACGGT+TGG | - | chr5.1:67394780-67394799 | None:intergenic | 35.0% |
! | TAGGGTACTTGTGACAAAAT+GGG | + | chr5.1:67395644-67395663 | MS.gene81622:intron | 35.0% |
! | TGACCATAATTTTGTGATCG+TGG | - | chr5.1:67396769-67396788 | None:intergenic | 35.0% |
! | TGCTACCATCATACTCTTTT+GGG | + | chr5.1:67397405-67397424 | MS.gene81622:CDS | 35.0% |
! | TTAGGGTACTTGTGACAAAA+TGG | + | chr5.1:67395643-67395662 | MS.gene81622:intron | 35.0% |
!!! | TATGGCACTGATTTTTGTTG+TGG | + | chr5.1:67397579-67397598 | MS.gene81622:CDS | 35.0% |
AATGACCTCAATGACTTCTG+AGG | - | chr5.1:67394493-67394512 | None:intergenic | 40.0% | |
ACTTCTTCACTACTTCCACA+TGG | - | chr5.1:67395889-67395908 | None:intergenic | 40.0% | |
AGGCAACACTATGTTACATG+AGG | + | chr5.1:67394938-67394957 | MS.gene81622:CDS | 40.0% | |
AGTAGTACACAGTTGTAGGA+TGG | - | chr5.1:67396108-67396127 | None:intergenic | 40.0% | |
ATGACCTCAATGACTTCTGA+GGG | - | chr5.1:67394492-67394511 | None:intergenic | 40.0% | |
ATGAGAGCAATTCCAAGAAG+CGG | - | chr5.1:67397481-67397500 | None:intergenic | 40.0% | |
ATTATCATTGTTAGGCAGGG+CGG | + | chr5.1:67395310-67395329 | MS.gene81622:intron | 40.0% | |
ATTCATCTAGCATCGTATGG+TGG | + | chr5.1:67395863-67395882 | MS.gene81622:CDS | 40.0% | |
CAGTTATCAGTGAACTCAGT+TGG | + | chr5.1:67397536-67397555 | MS.gene81622:CDS | 40.0% | |
CATCAACTAGCAAACCATTG+CGG | + | chr5.1:67397641-67397660 | MS.gene81622:CDS | 40.0% | |
CCAATTCATCTAGCATCGTA+TGG | + | chr5.1:67395860-67395879 | MS.gene81622:CDS | 40.0% | |
CCATACGATGCTAGATGAAT+TGG | - | chr5.1:67395863-67395882 | None:intergenic | 40.0% | |
CTACATATTGCAGCTTGGTA+TGG | + | chr5.1:67394645-67394664 | MS.gene81622:CDS | 40.0% | |
CTTCATGATTGCTGCTACAT+CGG | - | chr5.1:67395207-67395226 | None:intergenic | 40.0% | |
CTTTACCTTGCGGTTGAAAA+TGG | + | chr5.1:67395110-67395129 | MS.gene81622:CDS | 40.0% | |
GAAATCGGTACTTTACCTTG+CGG | + | chr5.1:67395100-67395119 | MS.gene81622:CDS | 40.0% | |
GAGTATGATGGTAGCACTAA+TGG | - | chr5.1:67397401-67397420 | None:intergenic | 40.0% | |
GCAAATGCTGCACAATTCAA+AGG | + | chr5.1:67395819-67395838 | MS.gene81622:CDS | 40.0% | |
GCAATCATGAAGCAGAATCA+AGG | + | chr5.1:67395215-67395234 | MS.gene81622:CDS | 40.0% | |
GCATCTACAGGTTATCTTGA+AGG | + | chr5.1:67395773-67395792 | MS.gene81622:CDS | 40.0% | |
GCCAAATTGGATCCATTCAA+TGG | + | chr5.1:67395718-67395737 | MS.gene81622:CDS | 40.0% | |
GGATGCTGTCAAACTAATCT+TGG | + | chr5.1:67395139-67395158 | MS.gene81622:CDS | 40.0% | |
GTGAAGGAGAAGAATGTTCA+AGG | + | chr5.1:67394918-67394937 | MS.gene81622:CDS | 40.0% | |
GTGACAAGAGCAATATAAGC+AGG | + | chr5.1:67394970-67394989 | MS.gene81622:CDS | 40.0% | |
TATCAGTGAACTCAGTTGGT+TGG | + | chr5.1:67397540-67397559 | MS.gene81622:CDS | 40.0% | |
TTCATGATTGCTGCTACATC+GGG | - | chr5.1:67395206-67395225 | None:intergenic | 40.0% | |
! | AAAATCGTTATGCCGCTTCT+TGG | + | chr5.1:67397466-67397485 | MS.gene81622:CDS | 40.0% |
! | ATACTCTTTTGGGCAACACT+TGG | + | chr5.1:67397415-67397434 | MS.gene81622:CDS | 40.0% |
! | GTGCTACCATCATACTCTTT+TGG | + | chr5.1:67397404-67397423 | MS.gene81622:CDS | 40.0% |
! | TGTGCTGACCCATACTATTA+GGG | + | chr5.1:67395626-67395645 | MS.gene81622:intron | 40.0% |
! | TGTTGCCCAAAAGAGTATGA+TGG | - | chr5.1:67397413-67397432 | None:intergenic | 40.0% |
! | TTGGTTGGCCAATGTATTTC+TGG | + | chr5.1:67397555-67397574 | MS.gene81622:CDS | 40.0% |
! | TTGTGCTGACCCATACTATT+AGG | + | chr5.1:67395625-67395644 | MS.gene81622:intron | 40.0% |
!! | CAAGAGCTGTTTCGTTGTTT+TGG | - | chr5.1:67396174-67396193 | None:intergenic | 40.0% |
!! | CACTTGCTTTGGAGTCAATA+TGG | - | chr5.1:67397060-67397079 | None:intergenic | 40.0% |
!! | GAGGGTTCAATTTCAAGTTC+AGG | - | chr5.1:67394474-67394493 | None:intergenic | 40.0% |
!! | GGCCAATGTATTTCTGGTTA+TGG | + | chr5.1:67397561-67397580 | MS.gene81622:CDS | 40.0% |
!! | GGTTTGCTAGTTGATGATGA+TGG | - | chr5.1:67397637-67397656 | None:intergenic | 40.0% |
!! | TATTGTTGGCCTTACCTTTC+TGG | - | chr5.1:67395337-67395356 | None:intergenic | 40.0% |
!! | TTATCTTTGGCTTTCATGGC+TGG | + | chr5.1:67397505-67397524 | MS.gene81622:CDS | 40.0% |
ACATCGGGCGATAATCTGTT+CGG | - | chr5.1:67395191-67395210 | None:intergenic | 45.0% | |
AGGTGACACTCCTTTGCATT+TGG | + | chr5.1:67396069-67396088 | MS.gene81622:CDS | 45.0% | |
CAAGGGTTAACACCTTGATC+AGG | - | chr5.1:67397718-67397737 | None:intergenic | 45.0% | |
CAATCGTCTTATGCCTCCAA+AGG | + | chr5.1:67395357-67395376 | MS.gene81622:intron | 45.0% | |
CAGTGCTACATATTGCAGCT+TGG | + | chr5.1:67394640-67394659 | MS.gene81622:CDS | 45.0% | |
CTTCATTACGCAGCATCTAC+AGG | + | chr5.1:67395761-67395780 | MS.gene81622:CDS | 45.0% | |
CTTGGAGAATAGCCCTAAGA+AGG | + | chr5.1:67395157-67395176 | MS.gene81622:CDS | 45.0% | |
GATCTTGCAGCCAAATGCAA+AGG | - | chr5.1:67396082-67396101 | None:intergenic | 45.0% | |
GCATTACATGTTGCTGCAAG+AGG | + | chr5.1:67394744-67394763 | MS.gene81622:CDS | 45.0% | |
GTAGATGCTGCGTAATGAAG+AGG | - | chr5.1:67395761-67395780 | None:intergenic | 45.0% | |
GTTTCACTCTTTCTTTGCCG+TGG | - | chr5.1:67396138-67396157 | None:intergenic | 45.0% | |
TCGGCTTAGCATCCTTCTTA+GGG | - | chr5.1:67395172-67395191 | None:intergenic | 45.0% | |
TGAACCCTCAGAAGTCATTG+AGG | + | chr5.1:67394485-67394504 | MS.gene81622:CDS | 45.0% | |
TGCGGTTGAAAATGGAGACA+AGG | + | chr5.1:67395118-67395137 | MS.gene81622:CDS | 45.0% | |
TGGACTGCACTTAAATCTGC+TGG | + | chr5.1:67397004-67397023 | MS.gene81622:CDS | 45.0% | |
TTACATGTTGCTGCAAGAGG+TGG | + | chr5.1:67394747-67394766 | MS.gene81622:CDS | 45.0% | |
TTCGGCTTAGCATCCTTCTT+AGG | - | chr5.1:67395173-67395192 | None:intergenic | 45.0% | |
! | CTGATCAAGGTGTTAACCCT+TGG | + | chr5.1:67397716-67397735 | MS.gene81622:CDS | 45.0% |
! | GAAGTGTCAAGCATCTCTGT+GGG | - | chr5.1:67395932-67395951 | None:intergenic | 45.0% |
! | TGTCTCCATTTTCAACCGCA+AGG | - | chr5.1:67395118-67395137 | None:intergenic | 45.0% |
!! | AGAAGTGTCAAGCATCTCTG+TGG | - | chr5.1:67395933-67395952 | None:intergenic | 45.0% |
!!! | ATTAAAAAAGTTTAATTTTA+GGG | + | chr5.1:67396378-67396397 | MS.gene81622:intron | 5.0% |
GATGCGGCTTCATCTTGCAA+TGG | - | chr5.1:67394426-67394445 | None:intergenic | 50.0% | |
GCAGCATGTTTAGCTGTTCC+AGG | + | chr5.1:67397292-67397311 | MS.gene81622:CDS | 50.0% | |
TCAAGCATCTCTGTGGGATC+TGG | - | chr5.1:67395926-67395945 | None:intergenic | 50.0% | |
TGCAAGATGAAGCCGCATCA+AGG | + | chr5.1:67394427-67394446 | MS.gene81622:CDS | 50.0% | |
! | GCTTTTCCTTCTGCTTCACC+TGG | - | chr5.1:67397313-67397332 | None:intergenic | 50.0% |
AGCATCGTATGGTGGCCATG+TGG | + | chr5.1:67395871-67395890 | MS.gene81622:CDS | 55.0% | |
GCTGTTCCAGGTGAAGCAGA+AGG | + | chr5.1:67397304-67397323 | MS.gene81622:CDS | 55.0% | |
CAGGGCGGTCCAGAAAGGTA+AGG | + | chr5.1:67395325-67395344 | MS.gene81622:intron | 60.0% | |
TTAGGCAGGGCGGTCCAGAA+AGG | + | chr5.1:67395320-67395339 | MS.gene81622:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 67394387 | 67397744 | 67394387 | ID=MS.gene81622 |
chr5.1 | mRNA | 67394387 | 67397744 | 67394387 | ID=MS.gene81622.t1;Parent=MS.gene81622 |
chr5.1 | exon | 67394387 | 67395236 | 67394387 | ID=MS.gene81622.t1.exon1;Parent=MS.gene81622.t1 |
chr5.1 | CDS | 67394387 | 67395236 | 67394387 | ID=cds.MS.gene81622.t1;Parent=MS.gene81622.t1 |
chr5.1 | exon | 67395690 | 67396240 | 67395690 | ID=MS.gene81622.t1.exon2;Parent=MS.gene81622.t1 |
chr5.1 | CDS | 67395690 | 67396240 | 67395690 | ID=cds.MS.gene81622.t1;Parent=MS.gene81622.t1 |
chr5.1 | exon | 67396995 | 67397744 | 67396995 | ID=MS.gene81622.t1.exon3;Parent=MS.gene81622.t1 |
chr5.1 | CDS | 67396995 | 67397744 | 67396995 | ID=cds.MS.gene81622.t1;Parent=MS.gene81622.t1 |
Gene Sequence |
Protein sequence |