Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057883.t1 | XP_024640313.1 | 56.1 | 830 | 123 | 5 | 24 | 748 | 8 | 701 | 3.40E-206 | 728.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057883.t1 | G7KHB3 | 56.1 | 830 | 123 | 5 | 24 | 748 | 8 | 701 | 2.4e-206 | 728.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057883.t1 | MTR_5g085480 | 49.805 | 771 | 266 | 19 | 23 | 748 | 7 | 701 | 0.0 | 561 |
| MS.gene057883.t1 | MTR_5g085830 | 45.082 | 732 | 310 | 22 | 24 | 736 | 47 | 705 | 7.89e-158 | 474 |
| MS.gene057883.t1 | MTR_5g085520 | 90.355 | 197 | 18 | 1 | 71 | 266 | 2 | 198 | 2.02e-119 | 357 |
| MS.gene057883.t1 | MTR_5g085490 | 66.909 | 275 | 85 | 4 | 2 | 273 | 20 | 291 | 2.33e-114 | 347 |
| MS.gene057883.t1 | MTR_2g033050 | 53.018 | 381 | 112 | 7 | 65 | 381 | 3 | 380 | 2.19e-111 | 344 |
| MS.gene057883.t1 | MTR_2g033050 | 40.521 | 422 | 190 | 7 | 221 | 600 | 3 | 405 | 5.34e-87 | 280 |
| MS.gene057883.t1 | MTR_5g085810 | 47.991 | 423 | 122 | 9 | 24 | 354 | 43 | 459 | 1.53e-100 | 326 |
| MS.gene057883.t1 | MTR_5g085810 | 41.648 | 437 | 155 | 13 | 393 | 736 | 304 | 733 | 8.07e-73 | 251 |
| MS.gene057883.t1 | MTR_5g085480 | 41.005 | 617 | 244 | 18 | 176 | 748 | 1 | 541 | 6.30e-94 | 303 |
| MS.gene057883.t1 | MTR_5g085500 | 67.262 | 168 | 55 | 0 | 424 | 591 | 2 | 169 | 2.62e-71 | 241 |
| MS.gene057883.t1 | MTR_5g085500 | 78.808 | 151 | 31 | 1 | 594 | 744 | 316 | 465 | 5.68e-67 | 229 |
| MS.gene057883.t1 | MTR_5g085500 | 75.610 | 82 | 20 | 0 | 273 | 354 | 46 | 127 | 4.81e-33 | 133 |
| MS.gene057883.t1 | MTR_5g085440 | 46.988 | 332 | 131 | 11 | 451 | 748 | 45 | 365 | 7.34e-71 | 236 |
| MS.gene057883.t1 | MTR_5g085440 | 66.216 | 148 | 45 | 3 | 1 | 146 | 15 | 159 | 4.57e-51 | 182 |
| MS.gene057883.t1 | MTR_2g033045 | 74.667 | 150 | 37 | 1 | 594 | 743 | 76 | 224 | 5.64e-65 | 218 |
| MS.gene057883.t1 | MTR_5g085530 | 80.000 | 70 | 13 | 1 | 405 | 473 | 4 | 73 | 6.48e-31 | 116 |
| MS.gene057883.t1 | MTR_1g069325 | 66.667 | 81 | 27 | 0 | 337 | 417 | 49 | 129 | 3.57e-25 | 107 |
| MS.gene057883.t1 | MTR_1g069325 | 66.667 | 81 | 27 | 0 | 337 | 417 | 100 | 180 | 6.87e-25 | 107 |
| MS.gene057883.t1 | MTR_2g096190 | 27.719 | 285 | 177 | 9 | 293 | 575 | 19 | 276 | 4.29e-14 | 76.3 |
| MS.gene057883.t1 | MTR_7g117620 | 22.926 | 458 | 261 | 13 | 305 | 688 | 47 | 486 | 7.92e-14 | 75.5 |
| MS.gene057883.t1 | MTR_1g069110 | 33.136 | 169 | 109 | 3 | 410 | 576 | 31 | 197 | 1.33e-13 | 74.3 |
| MS.gene057883.t1 | MTR_2g101310 | 27.861 | 201 | 121 | 5 | 407 | 592 | 152 | 343 | 3.61e-13 | 73.6 |
| MS.gene057883.t1 | MTR_2g101310 | 27.826 | 230 | 138 | 6 | 378 | 592 | 127 | 343 | 1.06e-12 | 71.6 |
| MS.gene057883.t1 | MTR_7g100390 | 23.864 | 440 | 244 | 12 | 305 | 688 | 53 | 457 | 3.82e-12 | 69.7 |
| MS.gene057883.t1 | MTR_7g451420 | 30.653 | 199 | 119 | 6 | 404 | 591 | 56 | 246 | 6.18e-12 | 67.8 |
| MS.gene057883.t1 | MTR_8g467780 | 29.787 | 188 | 112 | 6 | 404 | 576 | 58 | 240 | 7.07e-12 | 68.9 |
| MS.gene057883.t1 | MTR_7g021090 | 28.283 | 198 | 123 | 6 | 407 | 591 | 55 | 246 | 1.71e-11 | 67.4 |
| MS.gene057883.t1 | MTR_8g072510 | 27.841 | 176 | 115 | 4 | 412 | 579 | 61 | 232 | 1.91e-11 | 67.4 |
| MS.gene057883.t1 | MTR_8g062410 | 31.443 | 194 | 119 | 5 | 409 | 591 | 58 | 248 | 4.96e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057883.t1 | AT4G03500 | 28.975 | 566 | 304 | 16 | 229 | 731 | 104 | 634 | 2.01e-47 | 179 |
| MS.gene057883.t1 | AT4G03500 | 28.799 | 566 | 305 | 15 | 229 | 731 | 81 | 611 | 2.49e-47 | 178 |
| MS.gene057883.t1 | AT4G03500 | 28.799 | 566 | 305 | 15 | 229 | 731 | 81 | 611 | 2.49e-47 | 178 |
| MS.gene057883.t1 | AT1G03670 | 28.519 | 547 | 298 | 19 | 277 | 743 | 83 | 616 | 6.43e-47 | 177 |
| MS.gene057883.t1 | AT1G03670 | 25.392 | 319 | 171 | 9 | 72 | 348 | 73 | 366 | 3.50e-16 | 83.2 |
| MS.gene057883.t1 | AT4G03460 | 28.893 | 578 | 322 | 13 | 219 | 735 | 72 | 621 | 2.64e-44 | 169 |
| MS.gene057883.t1 | AT4G03460 | 34.921 | 378 | 190 | 8 | 406 | 731 | 213 | 586 | 4.35e-44 | 168 |
| MS.gene057883.t1 | AT4G03490 | 29.545 | 396 | 211 | 12 | 407 | 741 | 221 | 609 | 3.49e-36 | 145 |
| MS.gene057883.t1 | AT4G03490 | 29.723 | 397 | 209 | 14 | 407 | 741 | 211 | 599 | 3.74e-36 | 145 |
| MS.gene057883.t1 | AT4G03490 | 30.387 | 362 | 184 | 12 | 407 | 708 | 221 | 574 | 6.51e-35 | 142 |
| MS.gene057883.t1 | AT4G03450 | 26.789 | 545 | 287 | 17 | 273 | 724 | 78 | 603 | 2.75e-33 | 136 |
| MS.gene057883.t1 | AT4G03450 | 27.756 | 508 | 260 | 16 | 273 | 687 | 78 | 571 | 6.66e-33 | 135 |
| MS.gene057883.t1 | AT4G03490 | 30.275 | 327 | 192 | 11 | 407 | 708 | 201 | 516 | 2.52e-30 | 128 |
| MS.gene057883.t1 | AT4G03490 | 30.275 | 327 | 192 | 11 | 407 | 708 | 211 | 526 | 3.29e-30 | 127 |
| MS.gene057883.t1 | AT4G03470 | 25.094 | 534 | 309 | 14 | 273 | 725 | 126 | 649 | 1.45e-28 | 122 |
| MS.gene057883.t1 | AT4G03440 | 24.113 | 564 | 290 | 17 | 273 | 709 | 125 | 677 | 6.66e-27 | 117 |
| MS.gene057883.t1 | AT4G03440 | 24.113 | 564 | 290 | 17 | 273 | 709 | 125 | 677 | 6.66e-27 | 117 |
| MS.gene057883.t1 | AT4G03440 | 24.113 | 564 | 290 | 17 | 273 | 709 | 132 | 684 | 8.29e-27 | 117 |
| MS.gene057883.t1 | AT4G14390 | 24.765 | 533 | 312 | 15 | 229 | 698 | 134 | 640 | 1.87e-24 | 109 |
| MS.gene057883.t1 | AT4G14390 | 24.765 | 533 | 312 | 15 | 229 | 698 | 115 | 621 | 2.09e-24 | 109 |
| MS.gene057883.t1 | AT4G14390 | 24.345 | 534 | 314 | 15 | 229 | 698 | 134 | 641 | 3.61e-24 | 108 |
| MS.gene057883.t1 | AT4G05040 | 28.338 | 367 | 200 | 12 | 218 | 541 | 72 | 418 | 5.78e-23 | 104 |
| MS.gene057883.t1 | AT4G05040 | 28.338 | 367 | 200 | 12 | 218 | 541 | 72 | 418 | 5.78e-23 | 104 |
| MS.gene057883.t1 | AT4G05040 | 28.338 | 367 | 200 | 12 | 218 | 541 | 72 | 418 | 5.78e-23 | 104 |
| MS.gene057883.t1 | AT4G05040 | 28.338 | 367 | 200 | 12 | 218 | 541 | 72 | 418 | 5.78e-23 | 104 |
| MS.gene057883.t1 | AT4G05040 | 28.338 | 367 | 200 | 12 | 218 | 541 | 72 | 418 | 5.78e-23 | 104 |
| MS.gene057883.t1 | AT4G05040 | 28.338 | 367 | 200 | 12 | 218 | 541 | 72 | 418 | 5.78e-23 | 104 |
| MS.gene057883.t1 | AT4G05040 | 28.338 | 367 | 200 | 12 | 218 | 541 | 72 | 418 | 5.78e-23 | 104 |
| MS.gene057883.t1 | AT4G14400 | 24.394 | 578 | 334 | 19 | 218 | 705 | 58 | 622 | 6.45e-21 | 98.2 |
| MS.gene057883.t1 | AT4G03480 | 29.693 | 293 | 145 | 9 | 407 | 641 | 367 | 656 | 1.86e-20 | 96.7 |
| MS.gene057883.t1 | AT4G14400 | 24.425 | 565 | 324 | 19 | 231 | 705 | 5 | 556 | 1.87e-20 | 96.7 |
| MS.gene057883.t1 | AT4G14400 | 24.425 | 565 | 324 | 19 | 231 | 705 | 5 | 556 | 1.87e-20 | 96.7 |
| MS.gene057883.t1 | AT4G03480 | 29.693 | 293 | 145 | 9 | 407 | 641 | 370 | 659 | 2.08e-20 | 96.7 |
| MS.gene057883.t1 | AT4G14390 | 27.193 | 342 | 190 | 11 | 277 | 576 | 124 | 448 | 3.68e-17 | 85.9 |
| MS.gene057883.t1 | AT3G12360 | 21.657 | 531 | 328 | 14 | 231 | 721 | 78 | 560 | 6.42e-16 | 82.0 |
| MS.gene057883.t1 | AT3G12360 | 21.657 | 531 | 328 | 14 | 231 | 721 | 66 | 548 | 6.64e-16 | 82.0 |
| MS.gene057883.t1 | AT5G60070 | 24.516 | 310 | 194 | 8 | 308 | 613 | 39 | 312 | 1.99e-12 | 70.9 |
| MS.gene057883.t1 | AT5G60070 | 27.711 | 249 | 121 | 9 | 102 | 348 | 29 | 220 | 5.86e-11 | 66.2 |
| MS.gene057883.t1 | AT5G51160 | 28.571 | 161 | 110 | 3 | 424 | 580 | 44 | 203 | 4.89e-12 | 69.3 |
| MS.gene057883.t1 | AT1G34050 | 20.821 | 341 | 233 | 10 | 252 | 571 | 10 | 334 | 7.92e-12 | 68.9 |
| MS.gene057883.t1 | AT4G28706 | 47.222 | 72 | 38 | 0 | 337 | 408 | 133 | 204 | 8.55e-12 | 68.2 |
| MS.gene057883.t1 | AT4G28706 | 47.222 | 72 | 38 | 0 | 337 | 408 | 135 | 206 | 8.56e-12 | 68.2 |
| MS.gene057883.t1 | AT4G28706 | 47.222 | 72 | 38 | 0 | 337 | 408 | 135 | 206 | 8.75e-12 | 68.2 |
| MS.gene057883.t1 | AT4G28706 | 47.222 | 72 | 38 | 0 | 337 | 408 | 135 | 206 | 9.56e-12 | 68.6 |
| MS.gene057883.t1 | AT2G24600 | 24.615 | 325 | 192 | 10 | 260 | 556 | 1 | 300 | 1.53e-11 | 68.2 |
| MS.gene057883.t1 | AT2G24600 | 24.615 | 325 | 192 | 10 | 260 | 556 | 1 | 300 | 1.53e-11 | 68.2 |
| MS.gene057883.t1 | AT2G24600 | 24.615 | 325 | 192 | 10 | 260 | 556 | 1 | 300 | 2.57e-11 | 67.4 |
| MS.gene057883.t1 | AT2G24600 | 24.615 | 325 | 192 | 10 | 260 | 556 | 1 | 300 | 2.57e-11 | 67.4 |
| MS.gene057883.t1 | AT2G31820 | 21.359 | 515 | 302 | 16 | 258 | 688 | 99 | 594 | 7.75e-11 | 66.2 |
| MS.gene057883.t1 | AT1G07710 | 26.552 | 290 | 172 | 9 | 294 | 575 | 20 | 276 | 9.05e-11 | 65.5 |
| MS.gene057883.t1 | AT1G07710 | 26.552 | 290 | 172 | 9 | 294 | 575 | 20 | 276 | 9.05e-11 | 65.5 |
Find 131 sgRNAs with CRISPR-Local
Find 273 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGCAGCGGCTTACATTTA+TGG | 0.138680 | 5.3:+69276002 | MS.gene057883:intron |
| ATTTACCTTGCGGTTGAAAA+TGG | 0.171599 | 5.3:+69271639 | MS.gene057883:CDS |
| CTGTCTTTGGCTTTCATTGC+TGG | 0.172672 | 5.3:+69276642 | MS.gene057883:CDS |
| AACCAACTTGGATCCATTTA+AGG | 0.181732 | 5.3:+69273868 | MS.gene057883:CDS |
| TTCCATGTTTGTCCCTTAAA+TGG | 0.189087 | 5.3:-69273881 | None:intergenic |
| TTGGTTGGCAAATGTGTTTC+TGG | 0.194285 | 5.3:+69276692 | MS.gene057883:CDS |
| CTTCATTGCGCAGCATTTAT+AGG | 0.202144 | 5.3:+69273912 | MS.gene057883:CDS |
| AACACTTGGATTAACTAAAT+TGG | 0.205790 | 5.3:+69276566 | MS.gene057883:CDS |
| TTAATACTAATTGCATTTCT+TGG | 0.219575 | 5.3:-69276054 | None:intergenic |
| CGCTCTCATCTCACTGTCTT+TGG | 0.227077 | 5.3:+69276629 | MS.gene057883:CDS |
| CCAATTCATCTAGCATCTTA+TGG | 0.233508 | 5.3:+69272158 | MS.gene057883:intron |
| CCAATTCATCTAGCATCTTA+TGG | 0.233508 | 5.3:+69274011 | MS.gene057883:CDS |
| GTTCTATTATCATACTCTTT+TGG | 0.258337 | 5.3:+69276541 | MS.gene057883:CDS |
| TCATTATCAGATTGTTGTTA+TGG | 0.268452 | 5.3:+69271576 | MS.gene057883:CDS |
| TCCGGCTTAGCATCATTCTT+AGG | 0.271780 | 5.3:-69271699 | None:intergenic |
| CCTTGTTCACAAAACATAAT+AGG | 0.279480 | 5.3:-69271431 | None:intergenic |
| GGCAAATGTGTTTCTGGTTA+TGG | 0.282279 | 5.3:+69276698 | MS.gene057883:CDS |
| GATATTGTAATGCCAATTCT+TGG | 0.288457 | 5.3:+69276603 | MS.gene057883:CDS |
| CCATAAGATGCTAGATGAAT+TGG | 0.308779 | 5.3:-69274011 | None:intergenic |
| TCAAACATATTTATAAGTTT+AGG | 0.325615 | 5.3:-69270997 | None:intergenic |
| CTCAATATCTATTAAATTAG+AGG | 0.325795 | 5.3:-69271127 | None:intergenic |
| TGCTTCAGTAGCAGCATGTT+TGG | 0.339931 | 5.3:+69276419 | MS.gene057883:intron |
| CTATGATGAGGTGTTAAATA+TGG | 0.342916 | 5.3:+69271404 | MS.gene057883:CDS |
| CTCCATTCAATGCAGATAAC+AGG | 0.347501 | 5.3:-69273111 | None:intergenic |
| TATCGTGACATTAAGAGAAT+TGG | 0.359988 | 5.3:+69271495 | MS.gene057883:CDS |
| AGGCATCCTAACATCAAAAT+AGG | 0.360561 | 5.3:-69273143 | None:intergenic |
| TTTACCTTGCGGTTGAAAAT+GGG | 0.366718 | 5.3:+69271640 | MS.gene057883:CDS |
| GCAGCATGTTTGGCTGTTCC+AGG | 0.367957 | 5.3:+69276429 | MS.gene057883:CDS |
| TGGAGACACCCCTTTGCATT+TGG | 0.370450 | 5.3:+69272367 | MS.gene057883:CDS |
| TGGAGACACCCCTTTGCATT+TGG | 0.370450 | 5.3:+69274220 | MS.gene057883:CDS |
| ATAAATCAGAAAGATAAGTA+TGG | 0.387644 | 5.3:+69272347 | MS.gene057883:CDS |
| ATAAATCAGAAAGATAAGTA+TGG | 0.387644 | 5.3:+69274200 | MS.gene057883:CDS |
| TGCTCTTGTCATTGTTAAAG+AGG | 0.395353 | 5.3:+69273171 | MS.gene057883:CDS |
| ATGAGAGCGATTCCAAGAAT+TGG | 0.411932 | 5.3:-69276615 | None:intergenic |
| TGGAGGTTCAACAAATTTGT+TGG | 0.414670 | 5.3:+69271101 | MS.gene057883:CDS |
| GGATGCAGTCAAACTAATCT+TGG | 0.416238 | 5.3:+69271668 | MS.gene057883:CDS |
| TCAAGCATCTCCGTGGGATC+AGG | 0.422730 | 5.3:-69274074 | None:intergenic |
| CAAGAGCCGTTTCGTTATCC+TGG | 0.426549 | 5.3:-69274322 | None:intergenic |
| ATACTAGAAAGTCAAGTTCA+TGG | 0.435339 | 5.3:+69272311 | MS.gene057883:CDS |
| ATACTAGAAAGTCAAGTTCA+TGG | 0.435339 | 5.3:+69274164 | MS.gene057883:CDS |
| ACAATTCAAAGTGACGTTGA+TGG | 0.441855 | 5.3:+69273981 | MS.gene057883:CDS |
| ACCAACTTGGATCCATTTAA+GGG | 0.442189 | 5.3:+69273869 | MS.gene057883:CDS |
| TCAAGCATCTCTGTGGGATC+AGG | 0.447170 | 5.3:-69272221 | None:intergenic |
| CCGGCTTAGCATCATTCTTA+GGG | 0.447690 | 5.3:-69271698 | None:intergenic |
| GACGGTGTTGAATTATTACT+TGG | 0.450335 | 5.3:+69273942 | MS.gene057883:CDS |
| ACAATGACAAGAGCAGTTGC+AGG | 0.450620 | 5.3:-69273163 | None:intergenic |
| ATCTTGCAGCCAAATGCAAA+GGG | 0.452815 | 5.3:-69272376 | None:intergenic |
| GGAGGTTCAACAAATTTGTT+GGG | 0.458276 | 5.3:+69271102 | MS.gene057883:CDS |
| CTGATCAAGGTGTTAATCCT+TGG | 0.462997 | 5.3:+69276856 | MS.gene057883:CDS |
| AGATCTTCCGGTACCATTGT+AGG | 0.463214 | 5.3:-69273076 | None:intergenic |
| GAAGCATATCACTTGGTGTA+TGG | 0.463790 | 5.3:+69271081 | MS.gene057883:CDS |
| TTTGCACGCGAAAGATCTTC+CGG | 0.473287 | 5.3:-69273088 | None:intergenic |
| ATCTTGCAGCCAAATGCAAA+GGG | 0.474929 | 5.3:-69274229 | None:intergenic |
| AACTTGATTGTCAAATGCGC+AGG | 0.480263 | 5.3:-69271046 | None:intergenic |
| ACCTCTTGCAGCAACATGTA+AGG | 0.481999 | 5.3:-69271271 | None:intergenic |
| TACAAGATTGAAGATCGGTT+CGG | 0.486770 | 5.3:+69271549 | MS.gene057883:CDS |
| CTTTCTGATTTATCATCTGA+CGG | 0.487010 | 5.3:-69272337 | None:intergenic |
| CTTTCTGATTTATCATCTGA+CGG | 0.487010 | 5.3:-69274190 | None:intergenic |
| AACTAAGTAGCACGCAGTTG+TGG | 0.488682 | 5.3:-69274261 | None:intergenic |
| CTTCATGATAGCTTCTACAA+CGG | 0.497082 | 5.3:-69271733 | None:intergenic |
| TTCATGATAGCTTCTACAAC+GGG | 0.498165 | 5.3:-69271732 | None:intergenic |
| GAGAGAAGTAAAACTGATCA+AGG | 0.499641 | 5.3:+69276843 | MS.gene057883:CDS |
| CCCTAAGAATGATGCTAAGC+CGG | 0.505153 | 5.3:+69271698 | MS.gene057883:CDS |
| TTTATGGCACTTAAATCTGC+TGG | 0.506611 | 5.3:+69276018 | MS.gene057883:CDS |
| ACTAAGTAGCACGCAGTTGT+GGG | 0.511031 | 5.3:-69274260 | None:intergenic |
| GCATTTATAGGTTACCTTGA+CGG | 0.511829 | 5.3:+69273924 | MS.gene057883:CDS |
| TCCCTTAAATGGATCCAAGT+TGG | 0.512343 | 5.3:-69273870 | None:intergenic |
| TGATGAATATAATGAATGCT+TGG | 0.525994 | 5.3:-69276494 | None:intergenic |
| GAGTATGATAATAGAACTGA+TGG | 0.527293 | 5.3:-69276535 | None:intergenic |
| CTACACATTGCAGCTAGGTA+TGG | 0.528030 | 5.3:+69271171 | MS.gene057883:CDS |
| AACCTGTTATCTGCATTGAA+TGG | 0.543116 | 5.3:+69273109 | MS.gene057883:CDS |
| CTGTTATCAGTGAACTCAGT+TGG | 0.547603 | 5.3:+69276673 | MS.gene057883:CDS |
| ATAAATGCTGCGCAATGAAG+AGG | 0.549255 | 5.3:-69273909 | None:intergenic |
| TATCAGTGAACTCAGTTGGT+TGG | 0.549615 | 5.3:+69276677 | MS.gene057883:CDS |
| TTCTAGTTGATGTTGATGGA+AGG | 0.552222 | 5.3:-69276767 | None:intergenic |
| CGTGACATTAAGAGAATTGG+CGG | 0.552756 | 5.3:+69271498 | MS.gene057883:CDS |
| AGGATCTCCTACAATGGTAC+CGG | 0.559044 | 5.3:+69273069 | MS.gene057883:CDS |
| AACTTTACAAGATTGAAGAT+CGG | 0.561700 | 5.3:+69271544 | MS.gene057883:CDS |
| TGCATTGAATGGAGCTAGAG+TGG | 0.563511 | 5.3:+69273120 | MS.gene057883:CDS |
| GAAATCTGTAATTTACCTTG+CGG | 0.563641 | 5.3:+69271629 | MS.gene057883:CDS |
| GCTTAGTGAAGCATATCACT+TGG | 0.563927 | 5.3:+69271074 | MS.gene057883:CDS |
| TTACCTTGCGGTTGAAAATG+GGG | 0.569081 | 5.3:+69271641 | MS.gene057883:CDS |
| TACTAGAAAAGAAACCAACT+TGG | 0.570724 | 5.3:+69273856 | MS.gene057883:CDS |
| GATCTTGCAGCCAAATGCAA+AGG | 0.573294 | 5.3:-69274230 | None:intergenic |
| GTGAACAAGGAAAATGCTCA+AGG | 0.574792 | 5.3:+69271444 | MS.gene057883:CDS |
| GGATCTTGATATGGTTAACC+AGG | 0.582624 | 5.3:+69274304 | MS.gene057883:CDS |
| CACAGAAGGATCTCCTACAA+TGG | 0.585278 | 5.3:+69273063 | MS.gene057883:CDS |
| GTGATCACAGCGACTTCTGA+GGG | 0.587579 | 5.3:-69271021 | None:intergenic |
| CTTCACATTGCAGCAGACAA+TGG | 0.589479 | 5.3:+69272266 | MS.gene057883:CDS |
| CTTCACATTGCAGCAGACAA+TGG | 0.589479 | 5.3:+69274119 | MS.gene057883:CDS |
| GATCTTGCAGCCAAATGCAA+AGG | 0.589736 | 5.3:-69272377 | None:intergenic |
| GTGACATTAAGAGAATTGGC+GGG | 0.593600 | 5.3:+69271499 | MS.gene057883:CDS |
| CATGTTATACTAATATTGAA+CGG | 0.594853 | 5.3:+69271325 | MS.gene057883:CDS |
| GGTTAACCAGGATAACGAAA+CGG | 0.597187 | 5.3:+69274316 | MS.gene057883:CDS |
| CAGTGCTACACATTGCAGCT+AGG | 0.599665 | 5.3:+69271166 | MS.gene057883:CDS |
| GCTGTTCCAGGTGAAGCAGA+AGG | 0.599773 | 5.3:+69276441 | MS.gene057883:CDS |
| ATTCACTCAATCTATGACCA+AGG | 0.601657 | 5.3:-69276873 | None:intergenic |
| TTGATGTTGATGGAAGGAAA+AGG | 0.605208 | 5.3:-69276761 | None:intergenic |
| ATCCATTTAAGGGACAAACA+TGG | 0.605452 | 5.3:+69273879 | MS.gene057883:CDS |
| AGTGATCACAGCGACTTCTG+AGG | 0.606219 | 5.3:-69271022 | None:intergenic |
| GCCTTACATGTTGCTGCAAG+AGG | 0.610873 | 5.3:+69271270 | MS.gene057883:CDS |
| TTAGACCAACTAATGCAAGA+TGG | 0.611704 | 5.3:+69270937 | None:intergenic |
| GTAGTAGGAAATGTATCGCA+AGG | 0.612345 | 5.3:-69276793 | None:intergenic |
| GTAATAATTCAACACCGTCA+AGG | 0.613878 | 5.3:-69273938 | None:intergenic |
| AAGAATGATGCTAAGCCGGA+GGG | 0.615867 | 5.3:+69271702 | MS.gene057883:CDS |
| ACTTGATTGTCAAATGCGCA+GGG | 0.617042 | 5.3:-69271045 | None:intergenic |
| TGCGGTTGAAAATGGGGACA+AGG | 0.619936 | 5.3:+69271647 | MS.gene057883:CDS |
| AGAATATTGTCCTGATCCCA+CGG | 0.622907 | 5.3:+69274064 | MS.gene057883:CDS |
| CGAACTTGTATATTCACAGA+AGG | 0.625943 | 5.3:+69273049 | MS.gene057883:CDS |
| GCATATCACTTGGTGTATGG+AGG | 0.627873 | 5.3:+69271084 | MS.gene057883:CDS |
| AGAAGTGTCAAGCATCTCTG+TGG | 0.631679 | 5.3:-69272228 | None:intergenic |
| TGATGAGGTGTTAAATATGG+AGG | 0.634849 | 5.3:+69271407 | MS.gene057883:CDS |
| TTACATGTTGCTGCAAGAGG+TGG | 0.637643 | 5.3:+69271273 | MS.gene057883:CDS |
| GAAGTGTCAAGCATCTCTGT+GGG | 0.645090 | 5.3:-69272227 | None:intergenic |
| AGAAGTGTCAAGCATCTCCG+TGG | 0.645474 | 5.3:-69274081 | None:intergenic |
| AGCATCTTATGGTGGCCATG+TGG | 0.645724 | 5.3:+69272169 | MS.gene057883:intron |
| AGCATCTTATGGTGGCCATG+TGG | 0.645724 | 5.3:+69274022 | MS.gene057883:CDS |
| GCAAGATGGAGTCTTACCAA+AGG | 0.646068 | 5.3:+69270951 | MS.gene057883:CDS |
| TAAGAATGATGCTAAGCCGG+AGG | 0.649636 | 5.3:+69271701 | MS.gene057883:CDS |
| ACAACGGGCGATAATCCCTC+CGG | 0.656222 | 5.3:-69271717 | None:intergenic |
| TGACATTAAGAGAATTGGCG+GGG | 0.659341 | 5.3:+69271500 | MS.gene057883:CDS |
| GCTATCATGAAGCATAATCA+CGG | 0.661947 | 5.3:+69271744 | MS.gene057883:CDS |
| AGGAAACACTATGTTACATG+AGG | 0.662740 | 5.3:+69271464 | MS.gene057883:CDS |
| TGATTTAGAAGACTATGATG+AGG | 0.667637 | 5.3:+69271392 | MS.gene057883:CDS |
| GAAGTGTCAAGCATCTCCGT+GGG | 0.677474 | 5.3:-69274080 | None:intergenic |
| ACTTCTTCACTACTTCCACA+TGG | 0.680029 | 5.3:-69272184 | None:intergenic |
| ACTTCTTCACTACTTCCACA+TGG | 0.680029 | 5.3:-69274037 | None:intergenic |
| ATTCATCTAGCATCTTATGG+TGG | 0.698790 | 5.3:+69272161 | MS.gene057883:intron |
| ATTCATCTAGCATCTTATGG+TGG | 0.698790 | 5.3:+69274014 | MS.gene057883:CDS |
| TCTTGCAGCCAAATGCAAAG+GGG | 0.746892 | 5.3:-69272375 | None:intergenic |
| TCTTGCAGCCAAATGCAAAG+GGG | 0.746892 | 5.3:-69274228 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATGATAAATATGTTTA+GGG | - | chr5.3:69274494-69274513 | None:intergenic | 10.0% |
| !! | TAAATATGATAAATATGTTT+AGG | - | chr5.3:69274495-69274514 | None:intergenic | 10.0% |
| !!! | ATATTTTTTAGTTATATTGT+TGG | - | chr5.3:69275042-69275061 | None:intergenic | 10.0% |
| !!! | CTTTTTTTTTTTTTTACAAA+AGG | + | chr5.3:69274419-69274438 | MS.gene057883:intron | 10.0% |
| !!! | TTATAGAAAAAGTTTTTTAA+CGG | + | chr5.3:69275107-69275126 | MS.gene057883:intron | 10.0% |
| !!! | TTATATAAAAATTTGTTTAG+GGG | + | chr5.3:69274779-69274798 | MS.gene057883:intron | 10.0% |
| !! | ATCATAATTCTAAATAGATT+CGG | + | chr5.3:69273233-69273252 | MS.gene057883:intron | 15.0% |
| !! | TCAAACATATTTATAAGTTT+AGG | - | chr5.3:69271000-69271019 | None:intergenic | 15.0% |
| !!! | ATGCATAAGATTTTTTATTT+TGG | + | chr5.3:69275698-69275717 | MS.gene057883:intron | 15.0% |
| !!! | ATTGAAGAAAACATATTTTA+AGG | - | chr5.3:69275806-69275825 | None:intergenic | 15.0% |
| !!! | GATTTTTCTCTTTTAAAAAA+TGG | - | chr5.3:69275327-69275346 | None:intergenic | 15.0% |
| !!! | TATTATATTTGCTATATTGT+TGG | - | chr5.3:69274717-69274736 | None:intergenic | 15.0% |
| !!! | TTACACTTTTTAAATGATAA+TGG | + | chr5.3:69275179-69275198 | MS.gene057883:intron | 15.0% |
| !!! | TTCTTTTCATATTTTATTGA+TGG | + | chr5.3:69275485-69275504 | MS.gene057883:intron | 15.0% |
| !!! | TTGATTTTGATTCAAATTAT+AGG | + | chr5.3:69274634-69274653 | MS.gene057883:intron | 15.0% |
| !!! | TTTAACTTGATCATAATTTT+TGG | - | chr5.3:69272780-69272799 | None:intergenic | 15.0% |
| !!! | TTTGTACTTTTATCTTTTTA+TGG | + | chr5.3:69273410-69273429 | MS.gene057883:intron | 15.0% |
| !! | AAAGAAAAAGAAACAGAAAA+AGG | + | chr5.3:69276258-69276277 | MS.gene057883:intron | 20.0% |
| !! | ATAAATCAGAAAGATAAGTA+TGG | + | chr5.3:69272347-69272366 | MS.gene057883:CDS | 20.0% |
| !! | ATGTAAAATCATTTAAGCAA+TGG | - | chr5.3:69272650-69272669 | None:intergenic | 20.0% |
| !! | ATTTAAATTGATGTCAACTA+AGG | + | chr5.3:69275454-69275473 | MS.gene057883:intron | 20.0% |
| !! | CATGTTATACTAATATTGAA+CGG | + | chr5.3:69271325-69271344 | MS.gene057883:CDS | 20.0% |
| !! | CTCAATATCTATTAAATTAG+AGG | - | chr5.3:69271130-69271149 | None:intergenic | 20.0% |
| !! | TAACCAAAATAATGAAAAAG+TGG | + | chr5.3:69274283-69274302 | MS.gene057883:CDS | 20.0% |
| !! | TAACGTTTGAAAATTATGAA+CGG | + | chr5.3:69274909-69274928 | MS.gene057883:intron | 20.0% |
| !! | TACAAGTATATGAAAGTTAT+TGG | + | chr5.3:69272743-69272762 | MS.gene057883:intron | 20.0% |
| !! | TCAATAATAATGTAGCTAAA+TGG | - | chr5.3:69272611-69272630 | None:intergenic | 20.0% |
| !! | TCTATAATAAAGATTGTTGT+TGG | - | chr5.3:69275094-69275113 | None:intergenic | 20.0% |
| !! | TGATGTTTATAACTCATTTA+TGG | - | chr5.3:69275526-69275545 | None:intergenic | 20.0% |
| !! | TTAATACTAATTGCATTTCT+TGG | - | chr5.3:69276057-69276076 | None:intergenic | 20.0% |
| !!! | AGTTTTTTAACGGTATAATT+AGG | + | chr5.3:69275117-69275136 | MS.gene057883:intron | 20.0% |
| !!! | CAATTTTCCAAGATATTTTA+TGG | + | chr5.3:69276323-69276342 | MS.gene057883:intron | 20.0% |
| !!! | GAAAGTTTTAGATATAATCT+TGG | - | chr5.3:69271845-69271864 | None:intergenic | 20.0% |
| ! | AAAAAAAAAAAGAGTTTGCG+AGG | - | chr5.3:69274411-69274430 | None:intergenic | 25.0% |
| ! | AAAAAAAAAAGAGTTTGCGA+GGG | - | chr5.3:69274410-69274429 | None:intergenic | 25.0% |
| ! | AAAAAGGCTTGAATAGATAT+AGG | + | chr5.3:69276274-69276293 | MS.gene057883:intron | 25.0% |
| ! | AAAAGGCTTGAATAGATATA+GGG | + | chr5.3:69276275-69276294 | MS.gene057883:intron | 25.0% |
| ! | AAATAGCAAGTTTATGATGT+TGG | - | chr5.3:69272460-69272479 | None:intergenic | 25.0% |
| ! | AACACTTGGATTAACTAAAT+TGG | + | chr5.3:69276566-69276585 | MS.gene057883:CDS | 25.0% |
| ! | AACTTTACAAGATTGAAGAT+CGG | + | chr5.3:69271544-69271563 | MS.gene057883:CDS | 25.0% |
| ! | ACAAGATAAAGACAATAAAC+AGG | + | chr5.3:69276122-69276141 | MS.gene057883:intron | 25.0% |
| ! | ATATCTTGGAAAATTGTTGT+CGG | - | chr5.3:69276319-69276338 | None:intergenic | 25.0% |
| ! | ATTATATACTAGCGAAAAGA+CGG | + | chr5.3:69274848-69274867 | MS.gene057883:intron | 25.0% |
| ! | GTCATTGAAATAGATAATCA+TGG | - | chr5.3:69275018-69275037 | None:intergenic | 25.0% |
| ! | GTTGTAGCATAATGTAATAT+AGG | + | chr5.3:69273207-69273226 | MS.gene057883:intron | 25.0% |
| ! | TAAGTACTAGAAAAATCCTT+TGG | - | chr5.3:69270970-69270989 | None:intergenic | 25.0% |
| ! | TAGAAAAAGAAAGAAGTAGT+AGG | - | chr5.3:69276811-69276830 | None:intergenic | 25.0% |
| ! | TCAAAATATGTTTGACTACA+TGG | - | chr5.3:69275741-69275760 | None:intergenic | 25.0% |
| ! | TCAAGTTAAATTTAAGCACT+AGG | + | chr5.3:69272790-69272809 | MS.gene057883:intron | 25.0% |
| ! | TCTAAGTAAATTGTCATTGT+TGG | + | chr5.3:69273304-69273323 | MS.gene057883:intron | 25.0% |
| ! | TGATGAATATAATGAATGCT+TGG | - | chr5.3:69276497-69276516 | None:intergenic | 25.0% |
| !! | AAAATAAGTGCTATTAAAGG+AGG | + | chr5.3:69273804-69273823 | MS.gene057883:intron | 25.0% |
| !! | AATGAATTCTGAAGATTGTA+AGG | + | chr5.3:69273433-69273452 | MS.gene057883:intron | 25.0% |
| !! | ATAGATAATCATGGTTAGTT+TGG | - | chr5.3:69275009-69275028 | None:intergenic | 25.0% |
| !! | ATTTAGGAACAACAAAGTTT+TGG | - | chr5.3:69275626-69275645 | None:intergenic | 25.0% |
| !! | CCAAGATATTTTATGGTAAA+AGG | + | chr5.3:69276330-69276349 | MS.gene057883:intron | 25.0% |
| !! | CCTTTTACCATAAAATATCT+TGG | - | chr5.3:69276333-69276352 | None:intergenic | 25.0% |
| !! | GCGTTTAATTATAGCATTTT+TGG | + | chr5.3:69273507-69273526 | MS.gene057883:intron | 25.0% |
| !! | GTTCTATTATCATACTCTTT+TGG | + | chr5.3:69276541-69276560 | MS.gene057883:CDS | 25.0% |
| !! | TCATTATCAGATTGTTGTTA+TGG | + | chr5.3:69271576-69271595 | MS.gene057883:CDS | 25.0% |
| !! | TCCTTTAATAGCACTTATTT+TGG | - | chr5.3:69273805-69273824 | None:intergenic | 25.0% |
| !! | TTTCTTTTTCTTTACTCTGT+TGG | - | chr5.3:69276251-69276270 | None:intergenic | 25.0% |
| !!! | ACATGCTAATAGTGTTTTAA+CGG | - | chr5.3:69271310-69271329 | None:intergenic | 25.0% |
| !!! | AGTTTTAGATATAATCTTGG+AGG | - | chr5.3:69271842-69271861 | None:intergenic | 25.0% |
| !!! | ATAAAGAGAGTACATAGTTT+TGG | - | chr5.3:69274830-69274849 | None:intergenic | 25.0% |
| !!! | GATCCACTTTTTCATTATTT+TGG | - | chr5.3:69274289-69274308 | None:intergenic | 25.0% |
| !!! | GGATTTTTCTAGTACTTATA+AGG | + | chr5.3:69270972-69270991 | MS.gene057883:CDS | 25.0% |
| AAAAAAAAAGAGTTTGCGAG+GGG | - | chr5.3:69274409-69274428 | None:intergenic | 30.0% | |
| AAAACGCTATTTGAGTAGAA+AGG | + | chr5.3:69273578-69273597 | MS.gene057883:intron | 30.0% | |
| AAAGATGAAGATGAAGATGA+GGG | - | chr5.3:69273388-69273407 | None:intergenic | 30.0% | |
| AAATTGATGTCAACTAAGGA+TGG | + | chr5.3:69275458-69275477 | MS.gene057883:intron | 30.0% | |
| AATGAGTTATACACTACACA+TGG | - | chr5.3:69275943-69275962 | None:intergenic | 30.0% | |
| AGACATGCTTGATAGATAAT+TGG | + | chr5.3:69272859-69272878 | MS.gene057883:intron | 30.0% | |
| ATAAGTACCCTAATTGTATG+GGG | - | chr5.3:69271930-69271949 | None:intergenic | 30.0% | |
| ATACTAGAAAGTCAAGTTCA+TGG | + | chr5.3:69272311-69272330 | MS.gene057883:CDS | 30.0% | |
| CATAAGTACCCTAATTGTAT+GGG | - | chr5.3:69271931-69271950 | None:intergenic | 30.0% | |
| CCTTGTTCACAAAACATAAT+AGG | - | chr5.3:69271434-69271453 | None:intergenic | 30.0% | |
| CCTTTAATAGCACTAGAATA+AGG | + | chr5.3:69273651-69273670 | MS.gene057883:intron | 30.0% | |
| CTTGTTGAATTTGAATCACT+TGG | - | chr5.3:69276093-69276112 | None:intergenic | 30.0% | |
| CTTTCTGATTTATCATCTGA+CGG | - | chr5.3:69272340-69272359 | None:intergenic | 30.0% | |
| GAAATCTGTAATTTACCTTG+CGG | + | chr5.3:69271629-69271648 | MS.gene057883:CDS | 30.0% | |
| GAGTATGATAATAGAACTGA+TGG | - | chr5.3:69276538-69276557 | None:intergenic | 30.0% | |
| GATATTGTAATGCCAATTCT+TGG | + | chr5.3:69276603-69276622 | MS.gene057883:CDS | 30.0% | |
| GTCTCAAAGATGATTTATGA+AGG | - | chr5.3:69274370-69274389 | None:intergenic | 30.0% | |
| TAAAGATGAAGATGAAGATG+AGG | - | chr5.3:69273389-69273408 | None:intergenic | 30.0% | |
| TACTAGAAAAGAAACCAACT+TGG | + | chr5.3:69272003-69272022 | MS.gene057883:intron | 30.0% | |
| TACTGAAGCAGTGATTATAA+GGG | - | chr5.3:69276409-69276428 | None:intergenic | 30.0% | |
| TATCGTGACATTAAGAGAAT+TGG | + | chr5.3:69271495-69271514 | MS.gene057883:CDS | 30.0% | |
| TATCTTGGAAAATTGTTGTC+GGG | - | chr5.3:69276318-69276337 | None:intergenic | 30.0% | |
| TCATAAGTACCCTAATTGTA+TGG | - | chr5.3:69271932-69271951 | None:intergenic | 30.0% | |
| TGAAAAAGTGGATCTTGATA+TGG | + | chr5.3:69274295-69274314 | MS.gene057883:CDS | 30.0% | |
| TGAACGGTGTGATATAAAAA+TGG | + | chr5.3:69271341-69271360 | MS.gene057883:CDS | 30.0% | |
| TGATTTAGAAGACTATGATG+AGG | + | chr5.3:69271392-69271411 | MS.gene057883:CDS | 30.0% | |
| TTATATACTAGCGAAAAGAC+GGG | + | chr5.3:69274849-69274868 | MS.gene057883:intron | 30.0% | |
| ! | CCTATTATGTTTTGTGAACA+AGG | + | chr5.3:69271431-69271450 | MS.gene057883:CDS | 30.0% |
| ! | CCTTATTCTAGTGCTATTAA+AGG | - | chr5.3:69273654-69273673 | None:intergenic | 30.0% |
| ! | CTATGATGAGGTGTTAAATA+TGG | + | chr5.3:69271404-69271423 | MS.gene057883:CDS | 30.0% |
| ! | CTATTAGTACTTTTCTCAAG+AGG | + | chr5.3:69273279-69273298 | MS.gene057883:intron | 30.0% |
| ! | GCCAAAATAAGTGCTATTAA+AGG | + | chr5.3:69273801-69273820 | MS.gene057883:intron | 30.0% |
| ! | GTTCCCAAATTAGTACTTTT+TGG | + | chr5.3:69273341-69273360 | MS.gene057883:intron | 30.0% |
| ! | TAGGGTACTTATGACAAAAT+GGG | + | chr5.3:69271938-69271957 | MS.gene057883:intron | 30.0% |
| ! | TTAGGGTACTTATGACAAAA+TGG | + | chr5.3:69271937-69271956 | MS.gene057883:intron | 30.0% |
| !! | AAGCACTAGGAGTATTAAAA+AGG | + | chr5.3:69272803-69272822 | MS.gene057883:intron | 30.0% |
| !! | ACTTCTTTCTTTTTCTAGCA+TGG | + | chr5.3:69276814-69276833 | MS.gene057883:CDS | 30.0% |
| !! | AGTTGGTTTCTTTTCTAGTA+TGG | - | chr5.3:69272003-69272022 | None:intergenic | 30.0% |
| !! | CCAAATTAGTACTTTTTGGA+GGG | + | chr5.3:69273345-69273364 | MS.gene057883:intron | 30.0% |
| !! | CCTCCAAAAAGTACTAATTT+GGG | - | chr5.3:69273347-69273366 | None:intergenic | 30.0% |
| !! | CTGCAATGTTTTTATATGTG+TGG | - | chr5.3:69276365-69276384 | None:intergenic | 30.0% |
| !! | CTTTGTTGTTCCTAAATCAA+TGG | + | chr5.3:69275629-69275648 | MS.gene057883:intron | 30.0% |
| !! | TCATAAATCATCTTTGAGAC+AGG | + | chr5.3:69274370-69274389 | MS.gene057883:intron | 30.0% |
| !! | TGTTATCTTGCCATTGATTT+AGG | - | chr5.3:69275642-69275661 | None:intergenic | 30.0% |
| !! | TGTTGCTATTTAATAGCGTT+TGG | + | chr5.3:69273708-69273727 | MS.gene057883:intron | 30.0% |
| !!! | CTGTTTTGTTTCACTTTGTT+GGG | - | chr5.3:69276160-69276179 | None:intergenic | 30.0% |
| !!! | GATTTTCTAGTTGATGTTGA+TGG | - | chr5.3:69276774-69276793 | None:intergenic | 30.0% |
| !!! | TATGGCATTGATTTTTGTTG+TGG | + | chr5.3:69276716-69276735 | MS.gene057883:CDS | 30.0% |
| !!! | TCTGTTTTGTTTCACTTTGT+TGG | - | chr5.3:69276161-69276180 | None:intergenic | 30.0% |
| AACCAACTTGGATCCATTTA+AGG | + | chr5.3:69272015-69272034 | MS.gene057883:intron | 35.0% | |
| AACCTGTTATCTGCATTGAA+TGG | + | chr5.3:69273109-69273128 | MS.gene057883:CDS | 35.0% | |
| AAGATGAAGATGAAGATGAG+GGG | - | chr5.3:69273387-69273406 | None:intergenic | 35.0% | |
| AATAAAAAGAGCGGAAAGAC+GGG | - | chr5.3:69274885-69274904 | None:intergenic | 35.0% | |
| AATCAGCTCAAAAAAGCTGA+AGG | + | chr5.3:69275343-69275362 | MS.gene057883:intron | 35.0% | |
| ACAATTCAAAGTGACGTTGA+TGG | + | chr5.3:69272128-69272147 | MS.gene057883:intron | 35.0% | |
| ACCAACTTGGATCCATTTAA+GGG | + | chr5.3:69272016-69272035 | MS.gene057883:intron | 35.0% | |
| AGGAAACACTATGTTACATG+AGG | + | chr5.3:69271464-69271483 | MS.gene057883:CDS | 35.0% | |
| AGGCATCCTAACATCAAAAT+AGG | - | chr5.3:69273146-69273165 | None:intergenic | 35.0% | |
| ATAAATGCTGCGTAATGAAG+AGG | - | chr5.3:69272059-69272078 | None:intergenic | 35.0% | |
| ATCAGCTCAAAAAAGCTGAA+GGG | + | chr5.3:69275344-69275363 | MS.gene057883:intron | 35.0% | |
| ATCCATTTAAGGGACAAACA+TGG | + | chr5.3:69272026-69272045 | MS.gene057883:intron | 35.0% | |
| ATCTTGGAAAATTGTTGTCG+GGG | - | chr5.3:69276317-69276336 | None:intergenic | 35.0% | |
| ATTCATCTAGCATCTTATGG+TGG | + | chr5.3:69272161-69272180 | MS.gene057883:intron | 35.0% | |
| ATTTACCTTGCGGTTGAAAA+TGG | + | chr5.3:69271639-69271658 | MS.gene057883:CDS | 35.0% | |
| CAAGTGAAAAATTAGGAGGA+AGG | - | chr5.3:69272692-69272711 | None:intergenic | 35.0% | |
| CAATAAAAAGAGCGGAAAGA+CGG | - | chr5.3:69274886-69274905 | None:intergenic | 35.0% | |
| CCAATTCATCTAGCATCTTA+TGG | + | chr5.3:69272158-69272177 | MS.gene057883:intron | 35.0% | |
| CCATAAGATGCTAGATGAAT+TGG | - | chr5.3:69272161-69272180 | None:intergenic | 35.0% | |
| CGAACTTGTATATTCACAGA+AGG | + | chr5.3:69273049-69273068 | MS.gene057883:CDS | 35.0% | |
| CTACTGAAGCAGTGATTATA+AGG | - | chr5.3:69276410-69276429 | None:intergenic | 35.0% | |
| CTTCATGATAGCTTCTACAA+CGG | - | chr5.3:69271736-69271755 | None:intergenic | 35.0% | |
| CTTCATTACGCAGCATTTAT+AGG | + | chr5.3:69272059-69272078 | MS.gene057883:intron | 35.0% | |
| GACAGTAGACACTATGTTAT+TGG | - | chr5.3:69272834-69272853 | None:intergenic | 35.0% | |
| GAGAGAAGTAAAACTGATCA+AGG | + | chr5.3:69276843-69276862 | MS.gene057883:CDS | 35.0% | |
| GCATTTATAGGTTACCTTGA+CGG | + | chr5.3:69272071-69272090 | MS.gene057883:intron | 35.0% | |
| GCTATCATGAAGCATAATCA+CGG | + | chr5.3:69271744-69271763 | MS.gene057883:CDS | 35.0% | |
| GGTGTGATATAAAAATGGCA+TGG | + | chr5.3:69271346-69271365 | MS.gene057883:CDS | 35.0% | |
| GTAATAATTCAACACCGTCA+AGG | - | chr5.3:69272088-69272107 | None:intergenic | 35.0% | |
| TACAAGATTGAAGATCGGTT+CGG | + | chr5.3:69271549-69271568 | MS.gene057883:CDS | 35.0% | |
| TCCTATAACGTTGAACATTC+AGG | + | chr5.3:69273020-69273039 | MS.gene057883:intron | 35.0% | |
| TCCTGAATGTTCAACGTTAT+AGG | - | chr5.3:69273024-69273043 | None:intergenic | 35.0% | |
| TGCTCTTGTCATTGTTAAAG+AGG | + | chr5.3:69273171-69273190 | MS.gene057883:CDS | 35.0% | |
| TGGAGGTTCAACAAATTTGT+TGG | + | chr5.3:69271101-69271120 | MS.gene057883:CDS | 35.0% | |
| TGTAAGACGATCTTCAATGA+TGG | + | chr5.3:69275670-69275689 | MS.gene057883:intron | 35.0% | |
| TTCATGATAGCTTCTACAAC+GGG | - | chr5.3:69271735-69271754 | None:intergenic | 35.0% | |
| TTCCATGTTTGTCCCTTAAA+TGG | - | chr5.3:69272031-69272050 | None:intergenic | 35.0% | |
| TTCCTTTCTCATTTGTTTCC+AGG | + | chr5.3:69272566-69272585 | MS.gene057883:intron | 35.0% | |
| TTGTGTAACAATGTTTGCAG+CGG | + | chr5.3:69275989-69276008 | MS.gene057883:intron | 35.0% | |
| TTTACCTTGCGGTTGAAAAT+GGG | + | chr5.3:69271640-69271659 | MS.gene057883:CDS | 35.0% | |
| TTTATGGCACTTAAATCTGC+TGG | + | chr5.3:69276018-69276037 | MS.gene057883:CDS | 35.0% | |
| ! | ATACTCTTTTGGACAACACT+TGG | + | chr5.3:69276552-69276571 | MS.gene057883:CDS | 35.0% |
| ! | CCTCCTAATTTTTCACTTGT+GGG | + | chr5.3:69272693-69272712 | MS.gene057883:intron | 35.0% |
| ! | CTCCTAATTTTTCACTTGTG+GGG | + | chr5.3:69272694-69272713 | MS.gene057883:intron | 35.0% |
| ! | GACGGTGTTGAATTATTACT+TGG | + | chr5.3:69272089-69272108 | MS.gene057883:intron | 35.0% |
| ! | GGAGGTTCAACAAATTTGTT+GGG | + | chr5.3:69271102-69271121 | MS.gene057883:CDS | 35.0% |
| ! | GTAGCACTGTATTTTTCGTA+GGG | - | chr5.3:69271155-69271174 | None:intergenic | 35.0% |
| ! | GTTTTTATATGTGTGGACGT+CGG | - | chr5.3:69276358-69276377 | None:intergenic | 35.0% |
| ! | TAGCACTGTATTTTTCGTAG+GGG | - | chr5.3:69271154-69271173 | None:intergenic | 35.0% |
| ! | TCCTCCTAATTTTTCACTTG+TGG | + | chr5.3:69272692-69272711 | MS.gene057883:intron | 35.0% |
| ! | TGATGAGGTGTTAAATATGG+AGG | + | chr5.3:69271407-69271426 | MS.gene057883:CDS | 35.0% |
| ! | TGTAGCACTGTATTTTTCGT+AGG | - | chr5.3:69271156-69271175 | None:intergenic | 35.0% |
| ! | TTCTAGTTGATGTTGATGGA+AGG | - | chr5.3:69276770-69276789 | None:intergenic | 35.0% |
| ! | TTGATGTTGATGGAAGGAAA+AGG | - | chr5.3:69276764-69276783 | None:intergenic | 35.0% |
| !! | AGTTGTTTCTTAGCACTTTC+TGG | - | chr5.3:69273619-69273638 | None:intergenic | 35.0% |
| !! | CAACTGCTAATTTTGACACA+TGG | + | chr5.3:69272956-69272975 | MS.gene057883:intron | 35.0% |
| !! | CCCAAATTAGTACTTTTTGG+AGG | + | chr5.3:69273344-69273363 | MS.gene057883:intron | 35.0% |
| !! | CCCTCCAAAAAGTACTAATT+TGG | - | chr5.3:69273348-69273367 | None:intergenic | 35.0% |
| !! | CGTTTGGAAAGTGCTATTAT+AGG | + | chr5.3:69273724-69273743 | MS.gene057883:intron | 35.0% |
| !! | GTTGTTTCTTAGCACTTTCT+GGG | - | chr5.3:69273618-69273637 | None:intergenic | 35.0% |
| !! | TAGTACTTTTTGGAGGGTTT+TGG | + | chr5.3:69273351-69273370 | MS.gene057883:intron | 35.0% |
| AACTTGATTGTCAAATGCGC+AGG | - | chr5.3:69271049-69271068 | None:intergenic | 40.0% | |
| ACTTCTTCACTACTTCCACA+TGG | - | chr5.3:69272187-69272206 | None:intergenic | 40.0% | |
| ACTTGATTGTCAAATGCGCA+GGG | - | chr5.3:69271048-69271067 | None:intergenic | 40.0% | |
| AGAATATTGTCCTGATCCCA+CGG | + | chr5.3:69272211-69272230 | MS.gene057883:CDS | 40.0% | |
| AGATGAAGATGAAGATGAGG+GGG | - | chr5.3:69273386-69273405 | None:intergenic | 40.0% | |
| AGCCCCACAAGTGAAAAATT+AGG | - | chr5.3:69272699-69272718 | None:intergenic | 40.0% | |
| ATAAATGCTGCGCAATGAAG+AGG | - | chr5.3:69273912-69273931 | None:intergenic | 40.0% | |
| ATCTTGCAGCCAAATGCAAA+GGG | - | chr5.3:69272379-69272398 | None:intergenic | 40.0% | |
| ATGAGAGCGATTCCAAGAAT+TGG | - | chr5.3:69276618-69276637 | None:intergenic | 40.0% | |
| CATTGCAGAGACACTGATAT+TGG | + | chr5.3:69276377-69276396 | MS.gene057883:intron | 40.0% | |
| CCCACAAGTGAAAAATTAGG+AGG | - | chr5.3:69272696-69272715 | None:intergenic | 40.0% | |
| CGTGACATTAAGAGAATTGG+CGG | + | chr5.3:69271498-69271517 | MS.gene057883:CDS | 40.0% | |
| CGTTAGCGCAATAAAAAGAG+CGG | - | chr5.3:69274894-69274913 | None:intergenic | 40.0% | |
| CTCCATTCAATGCAGATAAC+AGG | - | chr5.3:69273114-69273133 | None:intergenic | 40.0% | |
| CTGTTATCAGTGAACTCAGT+TGG | + | chr5.3:69276673-69276692 | MS.gene057883:CDS | 40.0% | |
| CTTCATTGCGCAGCATTTAT+AGG | + | chr5.3:69273912-69273931 | MS.gene057883:CDS | 40.0% | |
| GCTTAGTGAAGCATATCACT+TGG | + | chr5.3:69271074-69271093 | MS.gene057883:CDS | 40.0% | |
| GGATCTTGATATGGTTAACC+AGG | + | chr5.3:69274304-69274323 | MS.gene057883:CDS | 40.0% | |
| GGATGCAGTCAAACTAATCT+TGG | + | chr5.3:69271668-69271687 | MS.gene057883:CDS | 40.0% | |
| GGTTAACCAGGATAACGAAA+CGG | + | chr5.3:69274316-69274335 | MS.gene057883:CDS | 40.0% | |
| GTAGTAGGAAATGTATCGCA+AGG | - | chr5.3:69276796-69276815 | None:intergenic | 40.0% | |
| GTGAACAAGGAAAATGCTCA+AGG | + | chr5.3:69271444-69271463 | MS.gene057883:CDS | 40.0% | |
| GTGACATTAAGAGAATTGGC+GGG | + | chr5.3:69271499-69271518 | MS.gene057883:CDS | 40.0% | |
| TAAGCAATGGTACATACGTG+TGG | - | chr5.3:69272637-69272656 | None:intergenic | 40.0% | |
| TATCAGTGAACTCAGTTGGT+TGG | + | chr5.3:69276677-69276696 | MS.gene057883:CDS | 40.0% | |
| TCAGCTCAAAAAAGCTGAAG+GGG | + | chr5.3:69275345-69275364 | MS.gene057883:intron | 40.0% | |
| TCCCTTAAATGGATCCAAGT+TGG | - | chr5.3:69272020-69272039 | None:intergenic | 40.0% | |
| TGAACTGCCCCATACAATTA+GGG | + | chr5.3:69271920-69271939 | MS.gene057883:intron | 40.0% | |
| TGACATTAAGAGAATTGGCG+GGG | + | chr5.3:69271500-69271519 | MS.gene057883:CDS | 40.0% | |
| TTACCTTGCGGTTGAAAATG+GGG | + | chr5.3:69271641-69271660 | MS.gene057883:CDS | 40.0% | |
| TTGAACTGCCCCATACAATT+AGG | + | chr5.3:69271919-69271938 | MS.gene057883:intron | 40.0% | |
| TTGGTTGGCAAATGTGTTTC+TGG | + | chr5.3:69276692-69276711 | MS.gene057883:CDS | 40.0% | |
| TTTGCAGCGGCTTACATTTA+TGG | + | chr5.3:69276002-69276021 | MS.gene057883:intron | 40.0% | |
| ! | CTGATCAAGGTGTTAATCCT+TGG | + | chr5.3:69276856-69276875 | MS.gene057883:CDS | 40.0% |
| !! | GAAGCATATCACTTGGTGTA+TGG | + | chr5.3:69271081-69271100 | MS.gene057883:CDS | 40.0% |
| !! | GGCAAATGTGTTTCTGGTTA+TGG | + | chr5.3:69276698-69276717 | MS.gene057883:CDS | 40.0% |
| !!! | GAGTGGCCTATTTTGATGTT+AGG | + | chr5.3:69273137-69273156 | MS.gene057883:CDS | 40.0% |
| AACTAAGTAGCACGCAGTTG+TGG | - | chr5.3:69274264-69274283 | None:intergenic | 45.0% | |
| AAGAAAGCCCCCGCTATAAA+AGG | - | chr5.3:69273757-69273776 | None:intergenic | 45.0% | |
| AAGAATGATGCTAAGCCGGA+GGG | + | chr5.3:69271702-69271721 | MS.gene057883:CDS | 45.0% | |
| ACAATGACAAGAGCAGTTGC+AGG | - | chr5.3:69273166-69273185 | None:intergenic | 45.0% | |
| ACCTCTTGCAGCAACATGTA+AGG | - | chr5.3:69271274-69271293 | None:intergenic | 45.0% | |
| ACTAAGTAGCACGCAGTTGT+GGG | - | chr5.3:69274263-69274282 | None:intergenic | 45.0% | |
| AGATCTTCCGGTACCATTGT+AGG | - | chr5.3:69273079-69273098 | None:intergenic | 45.0% | |
| AGGATCTCCTACAATGGTAC+CGG | + | chr5.3:69273069-69273088 | MS.gene057883:CDS | 45.0% | |
| CACAGAAGGATCTCCTACAA+TGG | + | chr5.3:69273063-69273082 | MS.gene057883:CDS | 45.0% | |
| CATTTGTTTCCAGGCCTCAA+AGG | + | chr5.3:69272575-69272594 | MS.gene057883:intron | 45.0% | |
| CCCTAAGAATGATGCTAAGC+CGG | + | chr5.3:69271698-69271717 | MS.gene057883:CDS | 45.0% | |
| CCGGCTTAGCATCATTCTTA+GGG | - | chr5.3:69271701-69271720 | None:intergenic | 45.0% | |
| CTACACATTGCAGCTAGGTA+TGG | + | chr5.3:69271171-69271190 | MS.gene057883:CDS | 45.0% | |
| CTTCACATTGCAGCAGACAA+TGG | + | chr5.3:69272266-69272285 | MS.gene057883:CDS | 45.0% | |
| GATCTTGCAGCCAAATGCAA+AGG | - | chr5.3:69272380-69272399 | None:intergenic | 45.0% | |
| GATGAAGATGAAGATGAGGG+GGG | - | chr5.3:69273385-69273404 | None:intergenic | 45.0% | |
| GCAAGATGGAGTCTTACCAA+AGG | + | chr5.3:69270951-69270970 | MS.gene057883:CDS | 45.0% | |
| GGCCTGGAAACAAATGAGAA+AGG | - | chr5.3:69272571-69272590 | None:intergenic | 45.0% | |
| TAAGAATGATGCTAAGCCGG+AGG | + | chr5.3:69271701-69271720 | MS.gene057883:CDS | 45.0% | |
| TCCGGCTTAGCATCATTCTT+AGG | - | chr5.3:69271702-69271721 | None:intergenic | 45.0% | |
| TCTTGCAGCCAAATGCAAAG+GGG | - | chr5.3:69272378-69272397 | None:intergenic | 45.0% | |
| TGCATTGAATGGAGCTAGAG+TGG | + | chr5.3:69273120-69273139 | MS.gene057883:CDS | 45.0% | |
| TGCTTCAGTAGCAGCATGTT+TGG | + | chr5.3:69276419-69276438 | MS.gene057883:intron | 45.0% | |
| TTACATGTTGCTGCAAGAGG+TGG | + | chr5.3:69271273-69271292 | MS.gene057883:CDS | 45.0% | |
| TTTGCACGCGAAAGATCTTC+CGG | - | chr5.3:69273091-69273110 | None:intergenic | 45.0% | |
| ! | AGGCTCCTGACCTTTTATAG+CGG | + | chr5.3:69273744-69273763 | MS.gene057883:intron | 45.0% |
| ! | GAAGTGTCAAGCATCTCTGT+GGG | - | chr5.3:69272230-69272249 | None:intergenic | 45.0% |
| !! | AGAAGTGTCAAGCATCTCTG+TGG | - | chr5.3:69272231-69272250 | None:intergenic | 45.0% |
| !! | CTGTCTTTGGCTTTCATTGC+TGG | + | chr5.3:69276642-69276661 | MS.gene057883:CDS | 45.0% |
| !! | GCATATCACTTGGTGTATGG+AGG | + | chr5.3:69271084-69271103 | MS.gene057883:CDS | 45.0% |
| !! | TCATCTTTGAGACAGGCAAG+TGG | + | chr5.3:69274377-69274396 | MS.gene057883:intron | 45.0% |
| !!! | TTTATATAAAAATTTGTTTA+GGG | + | chr5.3:69274778-69274797 | MS.gene057883:intron | 5.0% |
| !!! | TTTTATATAAAAATTTGTTT+AGG | + | chr5.3:69274777-69274796 | MS.gene057883:intron | 5.0% |
| AGCATCTTATGGTGGCCATG+TGG | + | chr5.3:69272169-69272188 | MS.gene057883:intron | 50.0% | |
| AGTGATCACAGCGACTTCTG+AGG | - | chr5.3:69271025-69271044 | None:intergenic | 50.0% | |
| CAAGAGCCGTTTCGTTATCC+TGG | - | chr5.3:69274325-69274344 | None:intergenic | 50.0% | |
| CAGTGCTACACATTGCAGCT+AGG | + | chr5.3:69271166-69271185 | MS.gene057883:CDS | 50.0% | |
| CGCTCTCATCTCACTGTCTT+TGG | + | chr5.3:69276629-69276648 | MS.gene057883:CDS | 50.0% | |
| GCCTTACATGTTGCTGCAAG+AGG | + | chr5.3:69271270-69271289 | MS.gene057883:CDS | 50.0% | |
| GTGATCACAGCGACTTCTGA+GGG | - | chr5.3:69271024-69271043 | None:intergenic | 50.0% | |
| GTTTCCAGGCCTCAAAGGAA+GGG | + | chr5.3:69272580-69272599 | MS.gene057883:intron | 50.0% | |
| TCAAGCATCTCTGTGGGATC+AGG | - | chr5.3:69272224-69272243 | None:intergenic | 50.0% | |
| TGCGGTTGAAAATGGGGACA+AGG | + | chr5.3:69271647-69271666 | MS.gene057883:CDS | 50.0% | |
| TGGAGACACCCCTTTGCATT+TGG | + | chr5.3:69272367-69272386 | MS.gene057883:CDS | 50.0% | |
| TGTTTCCAGGCCTCAAAGGA+AGG | + | chr5.3:69272579-69272598 | MS.gene057883:intron | 50.0% | |
| ! | CTCCTGACCTTTTATAGCGG+GGG | + | chr5.3:69273747-69273766 | MS.gene057883:intron | 50.0% |
| ! | GAAGTGTCAAGCATCTCCGT+GGG | - | chr5.3:69274083-69274102 | None:intergenic | 50.0% |
| ! | GCTCCTGACCTTTTATAGCG+GGG | + | chr5.3:69273746-69273765 | MS.gene057883:intron | 50.0% |
| ! | GCTTTTCCTTCTGCTTCACC+TGG | - | chr5.3:69276450-69276469 | None:intergenic | 50.0% |
| ! | GGCTCCTGACCTTTTATAGC+GGG | + | chr5.3:69273745-69273764 | MS.gene057883:intron | 50.0% |
| ! | TGTCCCCATTTTCAACCGCA+AGG | - | chr5.3:69271647-69271666 | None:intergenic | 50.0% |
| !! | AGAAGTGTCAAGCATCTCCG+TGG | - | chr5.3:69274084-69274103 | None:intergenic | 50.0% |
| ACAACGGGCGATAATCCCTC+CGG | - | chr5.3:69271720-69271739 | None:intergenic | 55.0% | |
| AGCCCCCGCTATAAAAGGTC+AGG | - | chr5.3:69273752-69273771 | None:intergenic | 55.0% | |
| ATGGCGAGTCCCTTCCTTTG+AGG | - | chr5.3:69272592-69272611 | None:intergenic | 55.0% | |
| GCAGCATGTTTGGCTGTTCC+AGG | + | chr5.3:69276429-69276448 | MS.gene057883:CDS | 55.0% | |
| GCTGTTCCAGGTGAAGCAGA+AGG | + | chr5.3:69276441-69276460 | MS.gene057883:CDS | 55.0% | |
| TCAAGCATCTCCGTGGGATC+AGG | - | chr5.3:69274077-69274096 | None:intergenic | 55.0% | |
| !! | GAGTCCCTTCCTTTGAGGCC+TGG | - | chr5.3:69272587-69272606 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 69270949 | 69276884 | 69270949 | ID=MS.gene057883 |
| chr5.3 | mRNA | 69270949 | 69276884 | 69270949 | ID=MS.gene057883.t1;Parent=MS.gene057883 |
| chr5.3 | exon | 69270949 | 69271765 | 69270949 | ID=MS.gene057883.t1.exon1;Parent=MS.gene057883.t1 |
| chr5.3 | CDS | 69270949 | 69271765 | 69270949 | ID=cds.MS.gene057883.t1;Parent=MS.gene057883.t1 |
| chr5.3 | exon | 69272171 | 69272408 | 69272171 | ID=MS.gene057883.t1.exon2;Parent=MS.gene057883.t1 |
| chr5.3 | CDS | 69272171 | 69272408 | 69272171 | ID=cds.MS.gene057883.t1;Parent=MS.gene057883.t1 |
| chr5.3 | exon | 69273042 | 69273192 | 69273042 | ID=MS.gene057883.t1.exon3;Parent=MS.gene057883.t1 |
| chr5.3 | CDS | 69273042 | 69273192 | 69273042 | ID=cds.MS.gene057883.t1;Parent=MS.gene057883.t1 |
| chr5.3 | exon | 69273286 | 69273308 | 69273286 | ID=MS.gene057883.t1.exon4;Parent=MS.gene057883.t1 |
| chr5.3 | CDS | 69273286 | 69273308 | 69273286 | ID=cds.MS.gene057883.t1;Parent=MS.gene057883.t1 |
| chr5.3 | exon | 69273851 | 69274349 | 69273851 | ID=MS.gene057883.t1.exon5;Parent=MS.gene057883.t1 |
| chr5.3 | CDS | 69273851 | 69274349 | 69273851 | ID=cds.MS.gene057883.t1;Parent=MS.gene057883.t1 |
| chr5.3 | exon | 69276009 | 69276069 | 69276009 | ID=MS.gene057883.t1.exon6;Parent=MS.gene057883.t1 |
| chr5.3 | CDS | 69276009 | 69276069 | 69276009 | ID=cds.MS.gene057883.t1;Parent=MS.gene057883.t1 |
| chr5.3 | exon | 69276427 | 69276884 | 69276427 | ID=MS.gene057883.t1.exon7;Parent=MS.gene057883.t1 |
| chr5.3 | CDS | 69276427 | 69276884 | 69276427 | ID=cds.MS.gene057883.t1;Parent=MS.gene057883.t1 |
| Gene Sequence |
| Protein sequence |