Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016742.t1 | XP_024640313.1 | 62.1 | 709 | 246 | 6 | 28 | 722 | 2 | 701 | 2.10E-181 | 646 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016742.t1 | Q8LPS2 | 28.4 | 261 | 150 | 8 | 73 | 326 | 88 | 318 | 6.3e-09 | 64.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016742.t1 | G7KHB3 | 62.1 | 709 | 246 | 6 | 28 | 722 | 2 | 701 | 1.5e-181 | 646.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016742.t1 | MTR_5g085480 | 67.179 | 716 | 198 | 9 | 28 | 722 | 2 | 701 | 0.0 | 885 |
MS.gene016742.t1 | MTR_5g085830 | 59.066 | 728 | 239 | 12 | 4 | 713 | 21 | 707 | 0.0 | 788 |
MS.gene016742.t1 | MTR_5g085810 | 57.279 | 735 | 227 | 13 | 27 | 711 | 36 | 733 | 0.0 | 743 |
MS.gene016742.t1 | MTR_5g085480 | 65.946 | 555 | 155 | 7 | 188 | 722 | 1 | 541 | 0.0 | 669 |
MS.gene016742.t1 | MTR_2g033050 | 80.101 | 397 | 75 | 3 | 75 | 468 | 1 | 396 | 0.0 | 651 |
MS.gene016742.t1 | MTR_5g085500 | 51.600 | 500 | 126 | 12 | 300 | 718 | 1 | 465 | 1.24e-137 | 413 |
MS.gene016742.t1 | MTR_5g085490 | 71.329 | 286 | 78 | 3 | 2 | 285 | 9 | 292 | 5.31e-137 | 405 |
MS.gene016742.t1 | MTR_2g033045 | 78.995 | 219 | 24 | 2 | 499 | 717 | 28 | 224 | 2.61e-105 | 323 |
MS.gene016742.t1 | MTR_5g085440 | 82.297 | 209 | 27 | 4 | 522 | 722 | 159 | 365 | 1.58e-103 | 321 |
MS.gene016742.t1 | MTR_5g085440 | 81.818 | 154 | 28 | 0 | 2 | 155 | 3 | 156 | 5.65e-84 | 270 |
MS.gene016742.t1 | MTR_5g085520 | 70.707 | 198 | 56 | 2 | 82 | 277 | 1 | 198 | 8.42e-87 | 272 |
MS.gene016742.t1 | MTR_5g085530 | 78.082 | 73 | 15 | 1 | 279 | 350 | 1 | 73 | 7.43e-33 | 121 |
MS.gene016742.t1 | MTR_2g096190 | 25.966 | 466 | 276 | 14 | 235 | 677 | 63 | 482 | 3.37e-23 | 104 |
MS.gene016742.t1 | MTR_7g100390 | 26.622 | 447 | 275 | 10 | 235 | 663 | 46 | 457 | 1.91e-22 | 102 |
MS.gene016742.t1 | MTR_4g062100 | 24.667 | 450 | 282 | 12 | 235 | 663 | 67 | 480 | 5.52e-22 | 100 |
MS.gene016742.t1 | MTR_2g101310 | 22.676 | 441 | 278 | 12 | 277 | 665 | 145 | 574 | 9.16e-22 | 100 |
MS.gene016742.t1 | MTR_7g117620 | 24.891 | 458 | 284 | 14 | 242 | 683 | 85 | 498 | 1.01e-20 | 97.1 |
MS.gene016742.t1 | MTR_1g069110 | 24.609 | 447 | 267 | 12 | 286 | 696 | 30 | 442 | 7.43e-19 | 90.5 |
MS.gene016742.t1 | MTR_1g032100 | 23.529 | 510 | 312 | 14 | 231 | 717 | 49 | 503 | 1.52e-18 | 90.1 |
MS.gene016742.t1 | MTR_2g096760 | 33.529 | 170 | 101 | 5 | 274 | 434 | 15 | 181 | 6.79e-18 | 87.4 |
MS.gene016742.t1 | MTR_2g101310 | 22.478 | 347 | 215 | 9 | 277 | 580 | 145 | 480 | 1.64e-15 | 80.5 |
MS.gene016742.t1 | MTR_2g101320 | 21.831 | 426 | 280 | 10 | 277 | 656 | 145 | 563 | 7.63e-15 | 78.6 |
MS.gene016742.t1 | MTR_8g105260 | 21.978 | 455 | 255 | 12 | 231 | 663 | 91 | 467 | 1.04e-13 | 74.7 |
MS.gene016742.t1 | MTR_7g099580 | 29.101 | 189 | 122 | 6 | 242 | 420 | 12 | 198 | 2.37e-13 | 72.4 |
MS.gene016742.t1 | MTR_3g016210 | 26.531 | 245 | 156 | 5 | 245 | 466 | 13 | 256 | 2.64e-13 | 73.2 |
MS.gene016742.t1 | MTR_8g072510 | 27.500 | 240 | 153 | 6 | 245 | 468 | 13 | 247 | 2.81e-13 | 73.2 |
MS.gene016742.t1 | MTR_7g100430 | 24.272 | 309 | 192 | 9 | 114 | 418 | 65 | 335 | 1.09e-12 | 71.6 |
MS.gene016742.t1 | MTR_8g066670 | 25.912 | 274 | 183 | 7 | 220 | 477 | 1052 | 1321 | 5.02e-12 | 70.1 |
MS.gene016742.t1 | MTR_8g467780 | 29.508 | 183 | 107 | 5 | 289 | 453 | 62 | 240 | 6.44e-11 | 65.9 |
MS.gene016742.t1 | MTR_8g073260 | 27.049 | 244 | 159 | 6 | 242 | 470 | 11 | 250 | 6.51e-11 | 65.5 |
MS.gene016742.t1 | MTR_5g085560 | 44.681 | 94 | 37 | 3 | 500 | 579 | 24 | 116 | 6.63e-11 | 60.8 |
MS.gene016742.t1 | MTR_4g021880 | 26.601 | 203 | 132 | 6 | 241 | 434 | 73 | 267 | 9.31e-11 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016742.t1 | AT1G03670 | 28.855 | 655 | 310 | 19 | 84 | 706 | 73 | 603 | 1.84e-59 | 212 |
MS.gene016742.t1 | AT4G03500 | 27.663 | 629 | 349 | 11 | 84 | 705 | 80 | 609 | 1.26e-58 | 210 |
MS.gene016742.t1 | AT4G03500 | 27.663 | 629 | 349 | 11 | 84 | 705 | 80 | 609 | 1.26e-58 | 210 |
MS.gene016742.t1 | AT4G03500 | 27.663 | 629 | 349 | 11 | 84 | 705 | 103 | 632 | 1.65e-58 | 210 |
MS.gene016742.t1 | AT4G03490 | 26.833 | 682 | 358 | 23 | 84 | 722 | 37 | 620 | 4.31e-51 | 188 |
MS.gene016742.t1 | AT4G03460 | 31.537 | 501 | 245 | 10 | 233 | 706 | 188 | 617 | 1.22e-47 | 179 |
MS.gene016742.t1 | AT4G03460 | 31.537 | 501 | 245 | 10 | 233 | 706 | 156 | 585 | 1.32e-47 | 178 |
MS.gene016742.t1 | AT4G03490 | 25.254 | 689 | 360 | 22 | 84 | 722 | 27 | 610 | 2.28e-38 | 151 |
MS.gene016742.t1 | AT4G03450 | 26.521 | 641 | 350 | 19 | 87 | 713 | 75 | 608 | 1.99e-37 | 149 |
MS.gene016742.t1 | AT4G03490 | 25.037 | 667 | 344 | 20 | 84 | 710 | 37 | 587 | 1.38e-36 | 147 |
MS.gene016742.t1 | AT4G03450 | 26.949 | 590 | 324 | 17 | 87 | 662 | 75 | 571 | 9.65e-36 | 144 |
MS.gene016742.t1 | AT4G03490 | 27.483 | 433 | 213 | 13 | 84 | 489 | 27 | 385 | 7.46e-31 | 129 |
MS.gene016742.t1 | AT4G03490 | 21.599 | 588 | 374 | 18 | 160 | 710 | 2 | 539 | 4.44e-21 | 98.6 |
MS.gene016742.t1 | AT4G03480 | 29.356 | 419 | 232 | 13 | 75 | 453 | 142 | 536 | 9.21e-31 | 129 |
MS.gene016742.t1 | AT4G03490 | 27.483 | 433 | 213 | 13 | 84 | 489 | 17 | 375 | 1.06e-30 | 129 |
MS.gene016742.t1 | AT4G03490 | 23.039 | 408 | 249 | 12 | 335 | 710 | 155 | 529 | 5.10e-21 | 98.6 |
MS.gene016742.t1 | AT4G03480 | 29.756 | 410 | 245 | 14 | 75 | 453 | 142 | 539 | 1.30e-30 | 128 |
MS.gene016742.t1 | AT4G03440 | 30.273 | 403 | 226 | 14 | 79 | 451 | 107 | 484 | 2.83e-29 | 124 |
MS.gene016742.t1 | AT4G03440 | 30.273 | 403 | 226 | 14 | 79 | 451 | 107 | 484 | 2.83e-29 | 124 |
MS.gene016742.t1 | AT4G03440 | 30.273 | 403 | 226 | 14 | 79 | 451 | 114 | 491 | 2.90e-29 | 124 |
MS.gene016742.t1 | AT4G05040 | 28.788 | 396 | 220 | 10 | 75 | 453 | 100 | 450 | 3.06e-28 | 120 |
MS.gene016742.t1 | AT4G05040 | 28.788 | 396 | 220 | 10 | 75 | 453 | 100 | 450 | 3.06e-28 | 120 |
MS.gene016742.t1 | AT4G05040 | 28.788 | 396 | 220 | 10 | 75 | 453 | 100 | 450 | 3.06e-28 | 120 |
MS.gene016742.t1 | AT4G05040 | 28.788 | 396 | 220 | 10 | 75 | 453 | 100 | 450 | 3.06e-28 | 120 |
MS.gene016742.t1 | AT4G05040 | 28.788 | 396 | 220 | 10 | 75 | 453 | 100 | 450 | 3.06e-28 | 120 |
MS.gene016742.t1 | AT4G05040 | 28.788 | 396 | 220 | 10 | 75 | 453 | 100 | 450 | 3.06e-28 | 120 |
MS.gene016742.t1 | AT4G05040 | 28.788 | 396 | 220 | 10 | 75 | 453 | 100 | 450 | 3.06e-28 | 120 |
MS.gene016742.t1 | AT4G03470 | 28.272 | 382 | 225 | 10 | 75 | 453 | 111 | 446 | 1.91e-26 | 115 |
MS.gene016742.t1 | AT4G14390 | 27.179 | 390 | 229 | 10 | 74 | 453 | 123 | 467 | 5.32e-26 | 114 |
MS.gene016742.t1 | AT4G14390 | 27.179 | 390 | 229 | 10 | 74 | 453 | 104 | 448 | 5.58e-26 | 114 |
MS.gene016742.t1 | AT4G14390 | 27.179 | 390 | 229 | 10 | 74 | 453 | 104 | 448 | 7.29e-26 | 112 |
MS.gene016742.t1 | AT4G14390 | 27.110 | 391 | 229 | 10 | 74 | 453 | 123 | 468 | 1.72e-25 | 112 |
MS.gene016742.t1 | AT5G02620 | 26.022 | 465 | 283 | 13 | 235 | 674 | 53 | 481 | 5.66e-23 | 103 |
MS.gene016742.t1 | AT5G02620 | 26.022 | 465 | 283 | 13 | 235 | 674 | 53 | 481 | 5.66e-23 | 103 |
MS.gene016742.t1 | AT5G02620 | 26.022 | 465 | 283 | 13 | 235 | 674 | 53 | 481 | 5.66e-23 | 103 |
MS.gene016742.t1 | AT4G14400 | 27.436 | 390 | 227 | 14 | 80 | 453 | 91 | 440 | 7.55e-23 | 104 |
MS.gene016742.t1 | AT4G14400 | 27.436 | 390 | 227 | 14 | 80 | 453 | 25 | 374 | 1.19e-22 | 103 |
MS.gene016742.t1 | AT4G14400 | 27.436 | 390 | 227 | 14 | 80 | 453 | 25 | 374 | 1.19e-22 | 103 |
MS.gene016742.t1 | AT5G60070 | 24.330 | 448 | 289 | 12 | 235 | 663 | 70 | 486 | 1.27e-21 | 99.8 |
MS.gene016742.t1 | AT3G12360 | 22.376 | 505 | 320 | 12 | 234 | 721 | 125 | 574 | 3.42e-21 | 99.0 |
MS.gene016742.t1 | AT3G12360 | 22.376 | 505 | 320 | 12 | 234 | 721 | 113 | 562 | 3.63e-21 | 98.6 |
MS.gene016742.t1 | AT5G02620 | 25.336 | 446 | 299 | 10 | 235 | 658 | 53 | 486 | 6.89e-21 | 97.4 |
MS.gene016742.t1 | AT5G02620 | 25.336 | 446 | 299 | 10 | 235 | 658 | 53 | 486 | 6.89e-21 | 97.4 |
MS.gene016742.t1 | AT2G31820 | 24.837 | 459 | 281 | 13 | 242 | 678 | 193 | 609 | 2.98e-20 | 96.3 |
MS.gene016742.t1 | AT5G50140 | 23.950 | 476 | 284 | 13 | 277 | 686 | 34 | 497 | 1.28e-19 | 93.6 |
MS.gene016742.t1 | AT2G24600 | 24.131 | 518 | 316 | 16 | 177 | 670 | 63 | 527 | 1.19e-17 | 87.8 |
MS.gene016742.t1 | AT2G24600 | 24.131 | 518 | 316 | 16 | 177 | 670 | 63 | 527 | 1.19e-17 | 87.8 |
MS.gene016742.t1 | AT5G54710 | 22.168 | 618 | 374 | 17 | 84 | 656 | 19 | 574 | 1.18e-16 | 84.7 |
MS.gene016742.t1 | AT3G09550 | 24.146 | 439 | 278 | 14 | 234 | 658 | 146 | 543 | 2.10e-16 | 83.6 |
MS.gene016742.t1 | AT3G09550 | 24.382 | 283 | 178 | 8 | 115 | 394 | 93 | 342 | 7.17e-12 | 69.3 |
MS.gene016742.t1 | AT3G09550 | 24.146 | 439 | 278 | 14 | 234 | 658 | 139 | 536 | 2.32e-16 | 83.6 |
MS.gene016742.t1 | AT3G09550 | 24.296 | 284 | 179 | 8 | 114 | 394 | 85 | 335 | 7.68e-12 | 68.9 |
MS.gene016742.t1 | AT3G09550 | 24.146 | 439 | 278 | 14 | 234 | 658 | 139 | 536 | 2.32e-16 | 83.6 |
MS.gene016742.t1 | AT3G09550 | 24.296 | 284 | 179 | 8 | 114 | 394 | 85 | 335 | 7.68e-12 | 68.9 |
MS.gene016742.t1 | AT1G05640 | 24.494 | 445 | 271 | 13 | 242 | 663 | 157 | 559 | 1.27e-15 | 81.3 |
MS.gene016742.t1 | AT1G10340 | 23.353 | 501 | 307 | 18 | 177 | 657 | 63 | 506 | 1.64e-15 | 80.9 |
MS.gene016742.t1 | AT2G01680 | 22.538 | 457 | 286 | 13 | 231 | 663 | 52 | 464 | 2.20e-15 | 80.1 |
MS.gene016742.t1 | AT5G54710 | 22.065 | 494 | 313 | 12 | 177 | 656 | 94 | 529 | 3.18e-15 | 79.7 |
MS.gene016742.t1 | AT1G34050 | 20.000 | 485 | 335 | 9 | 234 | 712 | 118 | 555 | 4.09e-15 | 79.3 |
MS.gene016742.t1 | AT1G07710 | 25.169 | 445 | 285 | 12 | 235 | 663 | 63 | 475 | 6.14e-15 | 79.0 |
MS.gene016742.t1 | AT1G07710 | 25.169 | 445 | 285 | 12 | 235 | 663 | 63 | 475 | 6.14e-15 | 79.0 |
MS.gene016742.t1 | AT1G10340 | 23.353 | 501 | 303 | 19 | 177 | 657 | 63 | 502 | 3.25e-14 | 76.6 |
MS.gene016742.t1 | AT2G24600 | 23.493 | 481 | 302 | 15 | 177 | 643 | 63 | 491 | 4.09e-14 | 76.3 |
MS.gene016742.t1 | AT2G24600 | 23.493 | 481 | 302 | 15 | 177 | 643 | 63 | 491 | 4.09e-14 | 76.3 |
MS.gene016742.t1 | AT5G51160 | 25.170 | 294 | 171 | 7 | 297 | 580 | 40 | 294 | 1.85e-13 | 73.6 |
MS.gene016742.t1 | AT1G14500 | 24.605 | 443 | 260 | 16 | 245 | 656 | 8 | 407 | 6.98e-13 | 72.0 |
MS.gene016742.t1 | AT2G28840 | 30.233 | 172 | 104 | 5 | 274 | 434 | 15 | 181 | 7.36e-13 | 72.0 |
MS.gene016742.t1 | AT4G19150 | 36.220 | 127 | 74 | 3 | 308 | 434 | 20 | 139 | 7.67e-12 | 66.6 |
Find 118 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTTTATCTGATTCTGATTT+TGG | 0.107559 | 5.2:-72824399 | None:intergenic |
TTGGTTGGCCAATGTGTTTC+TGG | 0.131510 | 5.2:+72824863 | MS.gene016742:CDS |
GACTCTTCATCATACTCTTC+TGG | 0.146198 | 5.2:-72821931 | None:intergenic |
AATTAATTTGATTGTCAAAT+TGG | 0.185555 | 5.2:-72821585 | None:intergenic |
CGCTCTCATTTCATTATCTT+TGG | 0.211926 | 5.2:+72824800 | MS.gene016742:CDS |
TTGGACAGCATGATATAAAA+AGG | 0.215429 | 5.2:+72821875 | MS.gene016742:CDS |
TCCATTGAATGGATCCAATT+TGG | 0.217296 | 5.2:-72822937 | None:intergenic |
CTTTACCTTGCGGTTGAAAA+TGG | 0.224244 | 5.2:+72822171 | MS.gene016742:CDS |
TTCGGCTTAGCATCCTTCTT+AGG | 0.225197 | 5.2:-72822231 | None:intergenic |
GGTTTGGATGCCACTCTTCT+TGG | 0.229989 | 5.2:-72824288 | None:intergenic |
GTGCTACCATCATACTCTTT+TGG | 0.232922 | 5.2:+72824712 | MS.gene016742:CDS |
GGCCAATGTGTTTCTGGTTA+TGG | 0.260208 | 5.2:+72824869 | MS.gene016742:CDS |
ACAATTCAAAGGGACAAATT+AGG | 0.261746 | 5.2:+72823048 | MS.gene016742:CDS |
ATTGTCAAATTGGCAACATT+TGG | 0.262468 | 5.2:-72821575 | None:intergenic |
AAAATTGTTATGCCGCTTCT+TGG | 0.265426 | 5.2:+72824774 | MS.gene016742:CDS |
CAAGAGCTGTTTCGTTGTTT+TGG | 0.276243 | 5.2:-72823389 | None:intergenic |
TTAAATTTGAACAAAAGTTT+TGG | 0.280811 | 5.2:-72821766 | None:intergenic |
TTAGCCAGTTATACTAATAT+TGG | 0.290809 | 5.2:+72821856 | MS.gene016742:CDS |
CTGTCCAATATTAGTATAAC+TGG | 0.292747 | 5.2:-72821860 | None:intergenic |
TACTAGAAAACAAGCCAAAT+TGG | 0.300074 | 5.2:+72822923 | MS.gene016742:CDS |
CCATACGATGCTAGATGAAT+TGG | 0.301352 | 5.2:-72823078 | None:intergenic |
CTTCACATTGCATCAAACTA+TGG | 0.318717 | 5.2:+72823186 | MS.gene016742:CDS |
GGATCCCAACAAAGTGATTC+AGG | 0.333650 | 5.2:+72824372 | MS.gene016742:CDS |
AGAAAGAGTGAAACTTGATT+TGG | 0.333662 | 5.2:+72823362 | MS.gene016742:CDS |
GTATGATGAAGAGTCAAATA+TGG | 0.336358 | 5.2:+72821939 | MS.gene016742:CDS |
ACTCTTCATCATACTCTTCT+GGG | 0.351775 | 5.2:-72821930 | None:intergenic |
AACACTTGGATTAACTGAAT+TGG | 0.355598 | 5.2:+72824737 | MS.gene016742:CDS |
TTTCATGTTTGTCCATTGAA+TGG | 0.371890 | 5.2:-72822948 | None:intergenic |
GTTTCACTCTTTCTTTGCCT+TGG | 0.372962 | 5.2:-72823353 | None:intergenic |
GAGTATGATGGTAGCACTAA+TGG | 0.379466 | 5.2:-72824706 | None:intergenic |
TGGAGTTTCAACAAATTTGT+TGG | 0.381612 | 5.2:+72821636 | MS.gene016742:CDS |
GCTATTCTCCAAGATTAGTT+TGG | 0.384019 | 5.2:-72822208 | None:intergenic |
GAAGCATATCAATTGGTCTA+TGG | 0.390920 | 5.2:+72821616 | MS.gene016742:CDS |
AGGTGACACTCCTTTGCATT+TGG | 0.395086 | 5.2:+72823287 | MS.gene016742:CDS |
TGAATCTGAATCACTTGGTT+TGG | 0.400624 | 5.2:-72824304 | None:intergenic |
TTGTCAAATTGGCAACATTT+GGG | 0.406024 | 5.2:-72821574 | None:intergenic |
GAGGGTTCAATTTCAAGTTC+AGG | 0.407035 | 5.2:-72821532 | None:intergenic |
GGATGCTGCCAAACTAATCT+TGG | 0.418646 | 5.2:+72822200 | MS.gene016742:CDS |
GCTTAATGAAGCATATCAAT+TGG | 0.419437 | 5.2:+72821609 | MS.gene016742:CDS |
TCGGCTTAGCATCCTTCTTA+GGG | 0.421612 | 5.2:-72822230 | None:intergenic |
TACAAAACTGAAGATTTGTC+TGG | 0.424015 | 5.2:+72822081 | MS.gene016742:CDS |
AATGTTTGCAGCATCTTACA+TGG | 0.427993 | 5.2:+72824232 | MS.gene016742:intron |
GCAGCATGTTTAGCTGTTCC+AGG | 0.429250 | 5.2:+72824600 | MS.gene016742:CDS |
ACTAAGTAGTACACAGTTGT+AGG | 0.432418 | 5.2:-72823327 | None:intergenic |
TAAGTGTTGAAACAATTGTA+AGG | 0.440585 | 5.2:-72824560 | None:intergenic |
TTCATGATTGCTGCTACAAC+AGG | 0.442160 | 5.2:-72822264 | None:intergenic |
CTTCATTACGCAGCATCTAC+AGG | 0.442175 | 5.2:+72822979 | MS.gene016742:CDS |
TCAAGCATCTCTGTGGGATC+AGG | 0.447170 | 5.2:-72823141 | None:intergenic |
CAAGGATTAACACCTTGTTC+AGG | 0.450221 | 5.2:-72825023 | None:intergenic |
AGATTTGTCTGGATACTCAT+TGG | 0.451663 | 5.2:+72822092 | MS.gene016742:CDS |
TCCTTCCATCATCATCTACT+AGG | 0.459843 | 5.2:+72824937 | MS.gene016742:CDS |
GAAGGTGTTGAATTATTACT+TGG | 0.460344 | 5.2:+72823009 | MS.gene016742:CDS |
TGAACCTGAATCACTTTGTT+GGG | 0.460731 | 5.2:-72824376 | None:intergenic |
GTGACAAGAGCAATATGAGC+AGG | 0.467735 | 5.2:+72822031 | MS.gene016742:CDS |
CTGAACAAGGTGTTAATCCT+TGG | 0.467856 | 5.2:+72825024 | MS.gene016742:CDS |
GTGAACCTGAATCACTTTGT+TGG | 0.475536 | 5.2:-72824377 | None:intergenic |
AAGGAATGTTAGTAGTGAAA+AGG | 0.480134 | 5.2:+72821507 | MS.gene016742:CDS |
GCATCTACAGGTTATCTTGA+AGG | 0.481004 | 5.2:+72822991 | MS.gene016742:CDS |
GCCAAATTGGATCCATTCAA+TGG | 0.490408 | 5.2:+72822936 | MS.gene016742:CDS |
ACTACTAACATTCCTTGATA+CGG | 0.495639 | 5.2:-72821500 | None:intergenic |
CATACGATGCTAGATGAATT+GGG | 0.501488 | 5.2:-72823077 | None:intergenic |
GCAAATGCTGCACAATTCAA+AGG | 0.501880 | 5.2:+72823037 | MS.gene016742:CDS |
TGCAAGATGAAGCCGTATCA+AGG | 0.505158 | 5.2:+72821488 | MS.gene016742:CDS |
AACAGAAATTGAGACTCCTA+TGG | 0.509157 | 5.2:+72821672 | MS.gene016742:CDS |
ATCAAACTATGGAAAATATG+AGG | 0.510180 | 5.2:+72823197 | MS.gene016742:CDS |
CTACATATTGCAGCTTGGTA+TGG | 0.527273 | 5.2:+72821706 | MS.gene016742:CDS |
CTTGGAGAATAGCCCTAAGA+AGG | 0.531650 | 5.2:+72822218 | MS.gene016742:CDS |
TTTGTTGGGATCCTTCAAGA+TGG | 0.536052 | 5.2:-72824362 | None:intergenic |
GAATTTGTGACGGAGAAGAA+TGG | 0.536444 | 5.2:+72821973 | MS.gene016742:CDS |
GATACGGCTTCATCTTGCAA+TGG | 0.537281 | 5.2:-72821484 | None:intergenic |
TATCAGTGAACTCAGTTGGT+TGG | 0.544404 | 5.2:+72824848 | MS.gene016742:CDS |
CAAATGCTGCACAATTCAAA+GGG | 0.544446 | 5.2:+72823038 | MS.gene016742:CDS |
TGGACTGCACTTAAATCTGC+TGG | 0.547758 | 5.2:+72824252 | MS.gene016742:CDS |
GCAATCATGAAGCAGAATCA+AGG | 0.549271 | 5.2:+72822276 | MS.gene016742:CDS |
CAGTTATCAGTGAACTCAGT+TGG | 0.550086 | 5.2:+72824844 | MS.gene016742:CDS |
CCAATTCATCTAGCATCGTA+TGG | 0.551447 | 5.2:+72823078 | MS.gene016742:CDS |
ACAACAGGCGATAATCCCTT+CGG | 0.560127 | 5.2:-72822249 | None:intergenic |
AATGACCTCAATGACTTCTG+AGG | 0.562524 | 5.2:-72821551 | None:intergenic |
TTTGGTGAATCTGAATCACT+TGG | 0.569155 | 5.2:-72824309 | None:intergenic |
GGCTTCCTAGTAGATGATGA+TGG | 0.569426 | 5.2:-72824942 | None:intergenic |
TGTTGCCCAAAAGAGTATGA+TGG | 0.588494 | 5.2:-72824718 | None:intergenic |
GTAGATGCTGCGTAATGAAG+AGG | 0.589723 | 5.2:-72822976 | None:intergenic |
ATTCAATGGACAAACATGAA+AGG | 0.591966 | 5.2:+72822950 | MS.gene016742:CDS |
GGACTTGTTAGAATTTGTGA+CGG | 0.594343 | 5.2:+72821963 | MS.gene016742:CDS |
CGCCATAACCAGAAACACAT+TGG | 0.594531 | 5.2:-72824871 | None:intergenic |
ATGACCTCAATGACTTCTGA+GGG | 0.600511 | 5.2:-72821550 | None:intergenic |
GCTGTTCCAGGTGAAGCAGA+AGG | 0.600903 | 5.2:+72824612 | MS.gene016742:CDS |
TCCTAGTAGATGATGATGGA+AGG | 0.602445 | 5.2:-72824938 | None:intergenic |
TATAATATGCCTCATCCAGA+GGG | 0.602495 | 5.2:+72821442 | None:intergenic |
TAAGAAGGATGCTAAGCCGA+AGG | 0.603220 | 5.2:+72822233 | MS.gene016742:CDS |
TGATGAAGATAATGAAAGCA+TGG | 0.607796 | 5.2:-72824665 | None:intergenic |
GAAATCAGTACTTTACCTTG+CGG | 0.610836 | 5.2:+72822161 | MS.gene016742:CDS |
AAGAAGGATGCTAAGCCGAA+GGG | 0.615867 | 5.2:+72822234 | MS.gene016742:CDS |
ATGAGAGCGATTCCAAGAAG+CGG | 0.617860 | 5.2:-72824786 | None:intergenic |
TGAACCCTCAGAAGTCATTG+AGG | 0.619198 | 5.2:+72821546 | MS.gene016742:CDS |
TGACAAGAGCAATATGAGCA+GGG | 0.620460 | 5.2:+72822032 | MS.gene016742:CDS |
CATCACTTACACTAAGACCA+AGG | 0.620872 | 5.2:-72825041 | None:intergenic |
GTGACGGAGAAGAATGGTCA+AGG | 0.622304 | 5.2:+72821979 | MS.gene016742:CDS |
AGTAGTACACAGTTGTAGGA+TGG | 0.631426 | 5.2:-72823323 | None:intergenic |
GATCTTGCAGCCAAATGCAA+AGG | 0.631460 | 5.2:-72823297 | None:intergenic |
AGAAGTGTCAAGCATCTCTG+TGG | 0.631679 | 5.2:-72823148 | None:intergenic |
TAATGAGAAATGTACCGCAA+TGG | 0.638151 | 5.2:-72824963 | None:intergenic |
CAGTGCTACATATTGCAGCT+TGG | 0.640810 | 5.2:+72821701 | MS.gene016742:CDS |
TGCGGTTGAAAATGGAGACA+AGG | 0.642265 | 5.2:+72822179 | MS.gene016742:CDS |
GAAGTGTCAAGCATCTCTGT+GGG | 0.645090 | 5.2:-72823147 | None:intergenic |
GCATTACATGTTGCTGCAAG+AGG | 0.645771 | 5.2:+72821805 | MS.gene016742:CDS |
TTACATGTTGCTGCAAGAGG+TGG | 0.650910 | 5.2:+72821808 | MS.gene016742:CDS |
AAACTATGGAAAATATGAGG+TGG | 0.653988 | 5.2:+72823200 | MS.gene016742:CDS |
TTATAATATGCCTCATCCAG+AGG | 0.656293 | 5.2:+72821441 | None:intergenic |
TGATGAAGAGTCAAATATGG+AGG | 0.657104 | 5.2:+72821942 | MS.gene016742:CDS |
GTGTACTACTTAGTTAACCA+AGG | 0.661765 | 5.2:+72823336 | MS.gene016742:CDS |
AAAGCAAAGTCCAAGAAGAG+TGG | 0.661770 | 5.2:+72824278 | MS.gene016742:CDS |
ATTCATCTAGCATCGTATGG+TGG | 0.672890 | 5.2:+72823081 | MS.gene016742:CDS |
AGGCAACACTATGTTACATG+AGG | 0.678880 | 5.2:+72821999 | MS.gene016742:CDS |
ACTTCTTCACTACTTCCACA+TGG | 0.680029 | 5.2:-72823104 | None:intergenic |
AGCATCGTATGGTGGCCATG+TGG | 0.685642 | 5.2:+72823089 | MS.gene016742:CDS |
CATCTACTAGGAAGCCATTG+CGG | 0.700888 | 5.2:+72824949 | MS.gene016742:CDS |
ACTGAAAGTAAACCTGAACA+AGG | 0.702715 | 5.2:+72825011 | MS.gene016742:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAATATTTAAAAGAAACA+AGG | + | chr5.2:72824091-72824110 | MS.gene016742:intron | 10.0% |
!!! | AATTAATGATTTTATATTCT+TGG | + | chr5.2:72822631-72822650 | MS.gene016742:intron | 10.0% |
!!! | GATTAAAAAAGTTTAATTTT+AGG | + | chr5.2:72823595-72823614 | MS.gene016742:intron | 10.0% |
!!! | TTCTCTATTTTTTTTTTTTT+TGG | - | chr5.2:72822580-72822599 | None:intergenic | 10.0% |
!!! | TTGATTTTATTATCAATTAA+TGG | + | chr5.2:72822540-72822559 | MS.gene016742:intron | 10.0% |
!! | ATAAATCAAAAAGATAACAA+AGG | + | chr5.2:72823267-72823286 | MS.gene016742:CDS | 15.0% |
!! | ATATAAGTAGATTAAATGAA+TGG | + | chr5.2:72823527-72823546 | MS.gene016742:intron | 15.0% |
!! | TTAGAATACACTAAAAATAA+TGG | + | chr5.2:72821904-72821923 | MS.gene016742:CDS | 15.0% |
!!! | AATTAATTTGATTGTCAAAT+TGG | - | chr5.2:72821588-72821607 | None:intergenic | 15.0% |
!!! | AGTGTTTAATTTTAAATGAA+TGG | + | chr5.2:72823637-72823656 | MS.gene016742:intron | 15.0% |
!!! | TTAAATTTGAACAAAAGTTT+TGG | - | chr5.2:72821769-72821788 | None:intergenic | 15.0% |
!!! | TTTAAAATTAAACACTTTAG+AGG | - | chr5.2:72823633-72823652 | None:intergenic | 15.0% |
!! | AAAAATTTAACAAGCCAAAA+TGG | + | chr5.2:72822685-72822704 | MS.gene016742:intron | 20.0% |
!! | AAATTAGGATTACTCTTATA+TGG | - | chr5.2:72824172-72824191 | None:intergenic | 20.0% |
!! | AAGTTCAATATAAATCTCTT+AGG | - | chr5.2:72824145-72824164 | None:intergenic | 20.0% |
!! | ACAAAAAATAGATGCAAATT+AGG | - | chr5.2:72824187-72824206 | None:intergenic | 20.0% |
!! | ATTGATTAAAGAACTTAACT+AGG | + | chr5.2:72823730-72823749 | MS.gene016742:intron | 20.0% |
!! | TCTATACACTAGTAAATTTA+GGG | - | chr5.2:72823907-72823926 | None:intergenic | 20.0% |
!! | TGACAAAAATTAAAAGTCTA+TGG | + | chr5.2:72823977-72823996 | MS.gene016742:intron | 20.0% |
!! | TTGATTAAAGAACTTAACTA+GGG | + | chr5.2:72823731-72823750 | MS.gene016742:intron | 20.0% |
!!! | TCATTATCCTTATCTTTTTT+TGG | + | chr5.2:72824980-72824999 | MS.gene016742:CDS | 20.0% |
! | AGGGTTAGAATGATATAATA+TGG | - | chr5.2:72823888-72823907 | None:intergenic | 25.0% |
! | ATCAAACTATGGAAAATATG+AGG | + | chr5.2:72823197-72823216 | MS.gene016742:CDS | 25.0% |
! | CTCTATACACTAGTAAATTT+AGG | - | chr5.2:72823908-72823927 | None:intergenic | 25.0% |
! | TTAGAATGATATAATATGGC+AGG | - | chr5.2:72823884-72823903 | None:intergenic | 25.0% |
! | TTAGCCAGTTATACTAATAT+TGG | + | chr5.2:72821856-72821875 | MS.gene016742:CDS | 25.0% |
!! | CTAATAGCTTTTTAACAGTT+GGG | - | chr5.2:72821840-72821859 | None:intergenic | 25.0% |
!! | TCTTTATCTGATTCTGATTT+TGG | - | chr5.2:72824402-72824421 | None:intergenic | 25.0% |
!! | TGGTGATATATATTCCATTT+TGG | - | chr5.2:72822702-72822721 | None:intergenic | 25.0% |
!!! | GCTAATTGTTTTGTTGTTTT+TGG | - | chr5.2:72822794-72822813 | None:intergenic | 25.0% |
!!! | TAAGTGTTGAAACAATTGTA+AGG | - | chr5.2:72824563-72824582 | None:intergenic | 25.0% |
!!! | TTCATTATCTTTGGCTTTTA+TGG | + | chr5.2:72824809-72824828 | MS.gene016742:CDS | 25.0% |
AAACTATGGAAAATATGAGG+TGG | + | chr5.2:72823200-72823219 | MS.gene016742:CDS | 30.0% | |
AACACTTGGATTAACTGAAT+TGG | + | chr5.2:72824737-72824756 | MS.gene016742:CDS | 30.0% | |
AAGGAATGTTAGTAGTGAAA+AGG | + | chr5.2:72821507-72821526 | MS.gene016742:CDS | 30.0% | |
ACAATTCAAAGGGACAAATT+AGG | + | chr5.2:72823048-72823067 | MS.gene016742:CDS | 30.0% | |
ACTACTAACATTCCTTGATA+CGG | - | chr5.2:72821503-72821522 | None:intergenic | 30.0% | |
AGAAAGAGTGAAACTTGATT+TGG | + | chr5.2:72823362-72823381 | MS.gene016742:CDS | 30.0% | |
AGAAGCCTAAGACAAATTTA+CGG | - | chr5.2:72822816-72822835 | None:intergenic | 30.0% | |
AGCATGATATAAAAAGGGAA+TGG | + | chr5.2:72821881-72821900 | MS.gene016742:CDS | 30.0% | |
AGTGAATGTGTTATAACCTT+TGG | - | chr5.2:72822436-72822455 | None:intergenic | 30.0% | |
ATTAGCCGTAAATTTGTCTT+AGG | + | chr5.2:72822808-72822827 | MS.gene016742:intron | 30.0% | |
ATTCAATGGACAAACATGAA+AGG | + | chr5.2:72822950-72822969 | MS.gene016742:CDS | 30.0% | |
ATTGTCAAATTGGCAACATT+TGG | - | chr5.2:72821578-72821597 | None:intergenic | 30.0% | |
CAAAAAGAAGACAATGTTGA+AGG | + | chr5.2:72824423-72824442 | MS.gene016742:CDS | 30.0% | |
CAAATTATCATTGTTAGGCA+GGG | + | chr5.2:72822368-72822387 | MS.gene016742:intron | 30.0% | |
CCATGCAAATTATCATTGTT+AGG | + | chr5.2:72822363-72822382 | MS.gene016742:intron | 30.0% | |
CTGTCCAATATTAGTATAAC+TGG | - | chr5.2:72821863-72821882 | None:intergenic | 30.0% | |
GCTTAATGAAGCATATCAAT+TGG | + | chr5.2:72821609-72821628 | MS.gene016742:CDS | 30.0% | |
GTATGATGAAGAGTCAAATA+TGG | + | chr5.2:72821939-72821958 | MS.gene016742:CDS | 30.0% | |
TACAAAACTGAAGATTTGTC+TGG | + | chr5.2:72822081-72822100 | MS.gene016742:CDS | 30.0% | |
TACTAGAAAACAAGCCAAAT+TGG | + | chr5.2:72822923-72822942 | MS.gene016742:CDS | 30.0% | |
TGATGAAGATAATGAAAGCA+TGG | - | chr5.2:72824668-72824687 | None:intergenic | 30.0% | |
TGGACAGCATGATATAAAAA+GGG | + | chr5.2:72821876-72821895 | MS.gene016742:CDS | 30.0% | |
TGGAGTTTCAACAAATTTGT+TGG | + | chr5.2:72821636-72821655 | MS.gene016742:CDS | 30.0% | |
TTGGACAGCATGATATAAAA+AGG | + | chr5.2:72821875-72821894 | MS.gene016742:CDS | 30.0% | |
TTGTCAAATTGGCAACATTT+GGG | - | chr5.2:72821577-72821596 | None:intergenic | 30.0% | |
TTTCATGTTTGTCCATTGAA+TGG | - | chr5.2:72822951-72822970 | None:intergenic | 30.0% | |
! | CCTAACAATGATAATTTGCA+TGG | - | chr5.2:72822366-72822385 | None:intergenic | 30.0% |
! | CTTCAACATTGTCTTCTTTT+TGG | - | chr5.2:72824425-72824444 | None:intergenic | 30.0% |
! | GCAAAAAATAATTTTCCCTC+TGG | - | chr5.2:72821460-72821479 | None:intergenic | 30.0% |
! | GCTAATAGCTTTTTAACAGT+TGG | - | chr5.2:72821841-72821860 | None:intergenic | 30.0% |
! | TCTTCATCAGATACTGTTTT+TGG | - | chr5.2:72824330-72824349 | None:intergenic | 30.0% |
!! | CTTAACTAGGGTTTTATCAT+TGG | + | chr5.2:72823743-72823762 | MS.gene016742:intron | 30.0% |
!! | GAAGGTGTTGAATTATTACT+TGG | + | chr5.2:72823009-72823028 | MS.gene016742:CDS | 30.0% |
!! | TGATAAATCATCTTTGAGAC+AGG | + | chr5.2:72823437-72823456 | MS.gene016742:intron | 30.0% |
AAAAACGAAGACCATCTTGA+AGG | + | chr5.2:72824351-72824370 | MS.gene016742:CDS | 35.0% | |
AACAGAAATTGAGACTCCTA+TGG | + | chr5.2:72821672-72821691 | MS.gene016742:CDS | 35.0% | |
AAGCAGTCACAAATAGCATA+AGG | + | chr5.2:72822727-72822746 | MS.gene016742:intron | 35.0% | |
AATGTTTGCAGCATCTTACA+TGG | + | chr5.2:72824232-72824251 | MS.gene016742:intron | 35.0% | |
ACTAAGTAGTACACAGTTGT+AGG | - | chr5.2:72823330-72823349 | None:intergenic | 35.0% | |
ACTCTTCATCATACTCTTCT+GGG | - | chr5.2:72821933-72821952 | None:intergenic | 35.0% | |
ACTGAAAGTAAACCTGAACA+AGG | + | chr5.2:72825011-72825030 | MS.gene016742:CDS | 35.0% | |
AGATTTGTCTGGATACTCAT+TGG | + | chr5.2:72822092-72822111 | MS.gene016742:CDS | 35.0% | |
CAAATGCTGCACAATTCAAA+GGG | + | chr5.2:72823038-72823057 | MS.gene016742:CDS | 35.0% | |
CACAAGTACCCTAATAGTAT+GGG | - | chr5.2:72822855-72822874 | None:intergenic | 35.0% | |
CAGAATCAAGGTATGTAAGT+TGG | + | chr5.2:72822288-72822307 | MS.gene016742:intron | 35.0% | |
CATACGATGCTAGATGAATT+GGG | - | chr5.2:72823080-72823099 | None:intergenic | 35.0% | |
CGCTCTCATTTCATTATCTT+TGG | + | chr5.2:72824800-72824819 | MS.gene016742:CDS | 35.0% | |
CGTGATGCCAAAAAAAGATA+AGG | - | chr5.2:72824990-72825009 | None:intergenic | 35.0% | |
CTTCACATTGCATCAAACTA+TGG | + | chr5.2:72823186-72823205 | MS.gene016742:CDS | 35.0% | |
CTTCCACGATCACAAAATTA+TGG | + | chr5.2:72824007-72824026 | MS.gene016742:intron | 35.0% | |
CTTTGTGCATGTAGTTTCTT+TGG | - | chr5.2:72822757-72822776 | None:intergenic | 35.0% | |
GAAATCAGTACTTTACCTTG+CGG | + | chr5.2:72822161-72822180 | MS.gene016742:CDS | 35.0% | |
GAATGTGTTATAACCTTTGG+AGG | - | chr5.2:72822433-72822452 | None:intergenic | 35.0% | |
GCAAATTATCATTGTTAGGC+AGG | + | chr5.2:72822367-72822386 | MS.gene016742:intron | 35.0% | |
GCATAAGACGATTGTATTGT+TGG | - | chr5.2:72822411-72822430 | None:intergenic | 35.0% | |
GTGTACTACTTAGTTAACCA+AGG | + | chr5.2:72823336-72823355 | MS.gene016742:CDS | 35.0% | |
TAATGAGAAATGTACCGCAA+TGG | - | chr5.2:72824966-72824985 | None:intergenic | 35.0% | |
TATTTGTGACTGCTTGTTTG+TGG | - | chr5.2:72822722-72822741 | None:intergenic | 35.0% | |
TCACAAGTACCCTAATAGTA+TGG | - | chr5.2:72822856-72822875 | None:intergenic | 35.0% | |
TCCATTGAATGGATCCAATT+TGG | - | chr5.2:72822940-72822959 | None:intergenic | 35.0% | |
TGAACCTGAATCACTTTGTT+GGG | - | chr5.2:72824379-72824398 | None:intergenic | 35.0% | |
TGAATCTGAATCACTTGGTT+TGG | - | chr5.2:72824307-72824326 | None:intergenic | 35.0% | |
TGATGAAGAGTCAAATATGG+AGG | + | chr5.2:72821942-72821961 | MS.gene016742:CDS | 35.0% | |
TTTGGTGAATCTGAATCACT+TGG | - | chr5.2:72824312-72824331 | None:intergenic | 35.0% | |
! | AAAATTGTTATGCCGCTTCT+TGG | + | chr5.2:72824774-72824793 | MS.gene016742:CDS | 35.0% |
! | AATAATTTTCCCTCTGGATG+AGG | - | chr5.2:72821454-72821473 | None:intergenic | 35.0% |
! | GAAGCATATCAATTGGTCTA+TGG | + | chr5.2:72821616-72821635 | MS.gene016742:CDS | 35.0% |
! | GCTATTCTCCAAGATTAGTT+TGG | - | chr5.2:72822211-72822230 | None:intergenic | 35.0% |
! | TAGGGTACTTGTGACAAAAT+GGG | + | chr5.2:72822862-72822881 | MS.gene016742:intron | 35.0% |
! | TGACCATAATTTTGTGATCG+TGG | - | chr5.2:72824013-72824032 | None:intergenic | 35.0% |
! | TGCTACCATCATACTCTTTT+GGG | + | chr5.2:72824713-72824732 | MS.gene016742:CDS | 35.0% |
! | TTAGGGTACTTGTGACAAAA+TGG | + | chr5.2:72822861-72822880 | MS.gene016742:intron | 35.0% |
!! | GGACTTGTTAGAATTTGTGA+CGG | + | chr5.2:72821963-72821982 | MS.gene016742:CDS | 35.0% |
!! | GTTGTTACTCTGCTTTTGTT+CGG | - | chr5.2:72824496-72824515 | None:intergenic | 35.0% |
!!! | TTATCTTTGGCTTTTATGGC+TGG | + | chr5.2:72824813-72824832 | MS.gene016742:CDS | 35.0% |
AAAGCAAAGTCCAAGAAGAG+TGG | + | chr5.2:72824278-72824297 | MS.gene016742:CDS | 40.0% | |
AATGACCTCAATGACTTCTG+AGG | - | chr5.2:72821554-72821573 | None:intergenic | 40.0% | |
ACTTCTTCACTACTTCCACA+TGG | - | chr5.2:72823107-72823126 | None:intergenic | 40.0% | |
AGGCAACACTATGTTACATG+AGG | + | chr5.2:72821999-72822018 | MS.gene016742:CDS | 40.0% | |
AGTAGTACACAGTTGTAGGA+TGG | - | chr5.2:72823326-72823345 | None:intergenic | 40.0% | |
ATGACCTCAATGACTTCTGA+GGG | - | chr5.2:72821553-72821572 | None:intergenic | 40.0% | |
ATTATCATTGTTAGGCAGGG+CGG | + | chr5.2:72822371-72822390 | MS.gene016742:intron | 40.0% | |
ATTCATCTAGCATCGTATGG+TGG | + | chr5.2:72823081-72823100 | MS.gene016742:CDS | 40.0% | |
CAAGGATTAACACCTTGTTC+AGG | - | chr5.2:72825026-72825045 | None:intergenic | 40.0% | |
CAGTTATCAGTGAACTCAGT+TGG | + | chr5.2:72824844-72824863 | MS.gene016742:CDS | 40.0% | |
CCAATTCATCTAGCATCGTA+TGG | + | chr5.2:72823078-72823097 | MS.gene016742:CDS | 40.0% | |
CCATACGATGCTAGATGAAT+TGG | - | chr5.2:72823081-72823100 | None:intergenic | 40.0% | |
CTACATATTGCAGCTTGGTA+TGG | + | chr5.2:72821706-72821725 | MS.gene016742:CDS | 40.0% | |
CTTTACCTTGCGGTTGAAAA+TGG | + | chr5.2:72822171-72822190 | MS.gene016742:CDS | 40.0% | |
GACTCTTCATCATACTCTTC+TGG | - | chr5.2:72821934-72821953 | None:intergenic | 40.0% | |
GAGTATGATGGTAGCACTAA+TGG | - | chr5.2:72824709-72824728 | None:intergenic | 40.0% | |
GCAAATGCTGCACAATTCAA+AGG | + | chr5.2:72823037-72823056 | MS.gene016742:CDS | 40.0% | |
GCAATCATGAAGCAGAATCA+AGG | + | chr5.2:72822276-72822295 | MS.gene016742:CDS | 40.0% | |
GCATCTACAGGTTATCTTGA+AGG | + | chr5.2:72822991-72823010 | MS.gene016742:CDS | 40.0% | |
GCCAAATTGGATCCATTCAA+TGG | + | chr5.2:72822936-72822955 | MS.gene016742:CDS | 40.0% | |
GTGAACCTGAATCACTTTGT+TGG | - | chr5.2:72824380-72824399 | None:intergenic | 40.0% | |
GTTTCACTCTTTCTTTGCCT+TGG | - | chr5.2:72823356-72823375 | None:intergenic | 40.0% | |
TATCAGTGAACTCAGTTGGT+TGG | + | chr5.2:72824848-72824867 | MS.gene016742:CDS | 40.0% | |
TCCTTCCATCATCATCTACT+AGG | + | chr5.2:72824937-72824956 | MS.gene016742:CDS | 40.0% | |
TGACAAGAGCAATATGAGCA+GGG | + | chr5.2:72822032-72822051 | MS.gene016742:CDS | 40.0% | |
TTCATGATTGCTGCTACAAC+AGG | - | chr5.2:72822267-72822286 | None:intergenic | 40.0% | |
TTTGTTGGGATCCTTCAAGA+TGG | - | chr5.2:72824365-72824384 | None:intergenic | 40.0% | |
! | ATACTCTTTTGGGCAACACT+TGG | + | chr5.2:72824723-72824742 | MS.gene016742:CDS | 40.0% |
! | CTGAACAAGGTGTTAATCCT+TGG | + | chr5.2:72825024-72825043 | MS.gene016742:CDS | 40.0% |
! | GAATTTGTGACGGAGAAGAA+TGG | + | chr5.2:72821973-72821992 | MS.gene016742:CDS | 40.0% |
! | GAGCAGGGATATGATTTTCA+AGG | + | chr5.2:72822047-72822066 | MS.gene016742:CDS | 40.0% |
! | GTGCTACCATCATACTCTTT+TGG | + | chr5.2:72824712-72824731 | MS.gene016742:CDS | 40.0% |
! | TGTAGCACTGTGTTTTCCAT+AGG | - | chr5.2:72821691-72821710 | None:intergenic | 40.0% |
! | TGTGCTGACCCATACTATTA+GGG | + | chr5.2:72822844-72822863 | MS.gene016742:intron | 40.0% |
! | TGTTGCCCAAAAGAGTATGA+TGG | - | chr5.2:72824721-72824740 | None:intergenic | 40.0% |
! | TTGTGCTGACCCATACTATT+AGG | + | chr5.2:72822843-72822862 | MS.gene016742:intron | 40.0% |
!! | ACTCTGCTTTTGTTCGGTTT+TGG | - | chr5.2:72824490-72824509 | None:intergenic | 40.0% |
!! | CAAGAGCTGTTTCGTTGTTT+TGG | - | chr5.2:72823392-72823411 | None:intergenic | 40.0% |
!! | GAGGGTTCAATTTCAAGTTC+AGG | - | chr5.2:72821535-72821554 | None:intergenic | 40.0% |
!! | TCCTAGTAGATGATGATGGA+AGG | - | chr5.2:72824941-72824960 | None:intergenic | 40.0% |
!!! | GTATTGTTGGCCTTACCTTT+TGG | - | chr5.2:72822398-72822417 | None:intergenic | 40.0% |
!!! | TATGGCGCTGATTTTTGTTG+TGG | + | chr5.2:72824887-72824906 | MS.gene016742:CDS | 40.0% |
AAGAAGGATGCTAAGCCGAA+GGG | + | chr5.2:72822234-72822253 | MS.gene016742:CDS | 45.0% | |
ACAACAGGCGATAATCCCTT+CGG | - | chr5.2:72822252-72822271 | None:intergenic | 45.0% | |
AGGTGACACTCCTTTGCATT+TGG | + | chr5.2:72823287-72823306 | MS.gene016742:CDS | 45.0% | |
ATGAGAGCGATTCCAAGAAG+CGG | - | chr5.2:72824789-72824808 | None:intergenic | 45.0% | |
CAATCGTCTTATGCCTCCAA+AGG | + | chr5.2:72822417-72822436 | MS.gene016742:intron | 45.0% | |
CAGTGCTACATATTGCAGCT+TGG | + | chr5.2:72821701-72821720 | MS.gene016742:CDS | 45.0% | |
CATCTACTAGGAAGCCATTG+CGG | + | chr5.2:72824949-72824968 | MS.gene016742:CDS | 45.0% | |
CGCCATAACCAGAAACACAT+TGG | - | chr5.2:72824874-72824893 | None:intergenic | 45.0% | |
CTTCATTACGCAGCATCTAC+AGG | + | chr5.2:72822979-72822998 | MS.gene016742:CDS | 45.0% | |
CTTGGAGAATAGCCCTAAGA+AGG | + | chr5.2:72822218-72822237 | MS.gene016742:CDS | 45.0% | |
GATACGGCTTCATCTTGCAA+TGG | - | chr5.2:72821487-72821506 | None:intergenic | 45.0% | |
GATCTTGCAGCCAAATGCAA+AGG | - | chr5.2:72823300-72823319 | None:intergenic | 45.0% | |
GCATTACATGTTGCTGCAAG+AGG | + | chr5.2:72821805-72821824 | MS.gene016742:CDS | 45.0% | |
GGATCCCAACAAAGTGATTC+AGG | + | chr5.2:72824372-72824391 | MS.gene016742:CDS | 45.0% | |
GGATGCTGCCAAACTAATCT+TGG | + | chr5.2:72822200-72822219 | MS.gene016742:CDS | 45.0% | |
GGCTTCCTAGTAGATGATGA+TGG | - | chr5.2:72824945-72824964 | None:intergenic | 45.0% | |
GTAGATGCTGCGTAATGAAG+AGG | - | chr5.2:72822979-72822998 | None:intergenic | 45.0% | |
GTGACAAGAGCAATATGAGC+AGG | + | chr5.2:72822031-72822050 | MS.gene016742:CDS | 45.0% | |
TAAGAAGGATGCTAAGCCGA+AGG | + | chr5.2:72822233-72822252 | MS.gene016742:CDS | 45.0% | |
TCGGCTTAGCATCCTTCTTA+GGG | - | chr5.2:72822233-72822252 | None:intergenic | 45.0% | |
TGAACCCTCAGAAGTCATTG+AGG | + | chr5.2:72821546-72821565 | MS.gene016742:CDS | 45.0% | |
TGCAAGATGAAGCCGTATCA+AGG | + | chr5.2:72821488-72821507 | MS.gene016742:CDS | 45.0% | |
TGCGGTTGAAAATGGAGACA+AGG | + | chr5.2:72822179-72822198 | MS.gene016742:CDS | 45.0% | |
TGGACTGCACTTAAATCTGC+TGG | + | chr5.2:72824252-72824271 | MS.gene016742:CDS | 45.0% | |
TTACATGTTGCTGCAAGAGG+TGG | + | chr5.2:72821808-72821827 | MS.gene016742:CDS | 45.0% | |
TTCGGCTTAGCATCCTTCTT+AGG | - | chr5.2:72822234-72822253 | None:intergenic | 45.0% | |
! | GAAGTGTCAAGCATCTCTGT+GGG | - | chr5.2:72823150-72823169 | None:intergenic | 45.0% |
! | TGTCTCCATTTTCAACCGCA+AGG | - | chr5.2:72822179-72822198 | None:intergenic | 45.0% |
! | TTGGTTGGCCAATGTGTTTC+TGG | + | chr5.2:72824863-72824882 | MS.gene016742:CDS | 45.0% |
!! | AGAAGTGTCAAGCATCTCTG+TGG | - | chr5.2:72823151-72823170 | None:intergenic | 45.0% |
!! | GGCCAATGTGTTTCTGGTTA+TGG | + | chr5.2:72824869-72824888 | MS.gene016742:CDS | 45.0% |
!!! | ATTAAAAAAGTTTAATTTTA+GGG | + | chr5.2:72823596-72823615 | MS.gene016742:intron | 5.0% |
GCAGCATGTTTAGCTGTTCC+AGG | + | chr5.2:72824600-72824619 | MS.gene016742:CDS | 50.0% | |
GGTTTGGATGCCACTCTTCT+TGG | - | chr5.2:72824291-72824310 | None:intergenic | 50.0% | |
TCAAGCATCTCTGTGGGATC+AGG | - | chr5.2:72823144-72823163 | None:intergenic | 50.0% | |
! | GCTTTTCCTTCTGCTTCACC+TGG | - | chr5.2:72824621-72824640 | None:intergenic | 50.0% |
! | GTGACGGAGAAGAATGGTCA+AGG | + | chr5.2:72821979-72821998 | MS.gene016742:CDS | 50.0% |
AGCATCGTATGGTGGCCATG+TGG | + | chr5.2:72823089-72823108 | MS.gene016742:CDS | 55.0% | |
GCTGTTCCAGGTGAAGCAGA+AGG | + | chr5.2:72824612-72824631 | MS.gene016742:CDS | 55.0% | |
GCAGGGCGGTCCAAAAGGTA+AGG | + | chr5.2:72822385-72822404 | MS.gene016742:intron | 60.0% | |
GTTAGGCAGGGCGGTCCAAA+AGG | + | chr5.2:72822380-72822399 | MS.gene016742:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 72821448 | 72825052 | 72821448 | ID=MS.gene016742 |
chr5.2 | mRNA | 72821448 | 72825052 | 72821448 | ID=MS.gene016742.t1;Parent=MS.gene016742 |
chr5.2 | exon | 72821448 | 72822297 | 72821448 | ID=MS.gene016742.t1.exon1;Parent=MS.gene016742.t1 |
chr5.2 | CDS | 72821448 | 72822297 | 72821448 | ID=cds.MS.gene016742.t1;Parent=MS.gene016742.t1 |
chr5.2 | exon | 72822908 | 72823416 | 72822908 | ID=MS.gene016742.t1.exon2;Parent=MS.gene016742.t1 |
chr5.2 | CDS | 72822908 | 72823416 | 72822908 | ID=cds.MS.gene016742.t1;Parent=MS.gene016742.t1 |
chr5.2 | exon | 72824243 | 72825052 | 72824243 | ID=MS.gene016742.t1.exon3;Parent=MS.gene016742.t1 |
chr5.2 | CDS | 72824243 | 72825052 | 72824243 | ID=cds.MS.gene016742.t1;Parent=MS.gene016742.t1 |
Gene Sequence |
Protein sequence |