Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070492.t1 | XP_003616929.1 | 66.1 | 673 | 200 | 5 | 24 | 674 | 39 | 705 | 5.70E-229 | 803.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070492.t1 | Q8LPS2 | 29.4 | 602 | 323 | 20 | 73 | 643 | 93 | 623 | 1.2e-14 | 83.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070492.t1 | G7K7K3 | 66.1 | 673 | 200 | 5 | 24 | 674 | 39 | 705 | 4.1e-229 | 803.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070492.t1 | MTR_5g085810 | 70.739 | 704 | 148 | 6 | 24 | 674 | 35 | 733 | 0.0 | 946 |
MS.gene070492.t1 | MTR_5g085830 | 70.877 | 673 | 168 | 5 | 24 | 674 | 39 | 705 | 0.0 | 942 |
MS.gene070492.t1 | MTR_5g085480 | 56.143 | 700 | 244 | 14 | 26 | 674 | 2 | 689 | 0.0 | 677 |
MS.gene070492.t1 | MTR_5g085480 | 59.555 | 539 | 181 | 11 | 163 | 674 | 1 | 529 | 0.0 | 566 |
MS.gene070492.t1 | MTR_2g033050 | 58.182 | 385 | 126 | 6 | 73 | 425 | 1 | 382 | 2.32e-148 | 437 |
MS.gene070492.t1 | MTR_5g085500 | 55.165 | 455 | 146 | 10 | 272 | 670 | 2 | 454 | 1.07e-147 | 437 |
MS.gene070492.t1 | MTR_2g033045 | 63.959 | 197 | 58 | 3 | 477 | 670 | 28 | 214 | 2.37e-71 | 234 |
MS.gene070492.t1 | MTR_5g085490 | 50.000 | 260 | 101 | 3 | 26 | 256 | 33 | 292 | 7.32e-71 | 232 |
MS.gene070492.t1 | MTR_5g085440 | 58.019 | 212 | 79 | 3 | 462 | 670 | 145 | 349 | 1.08e-66 | 223 |
MS.gene070492.t1 | MTR_5g085440 | 45.070 | 142 | 76 | 1 | 3 | 144 | 8 | 147 | 1.63e-25 | 109 |
MS.gene070492.t1 | MTR_5g085520 | 53.299 | 197 | 63 | 4 | 81 | 248 | 2 | 198 | 1.64e-56 | 191 |
MS.gene070492.t1 | MTR_5g085530 | 68.493 | 73 | 22 | 1 | 250 | 321 | 1 | 73 | 8.19e-30 | 112 |
MS.gene070492.t1 | MTR_1g115575 | 23.801 | 563 | 340 | 21 | 114 | 659 | 72 | 562 | 1.22e-20 | 96.7 |
MS.gene070492.t1 | MTR_2g096190 | 23.308 | 532 | 318 | 15 | 115 | 632 | 27 | 482 | 1.24e-19 | 93.6 |
MS.gene070492.t1 | MTR_7g100430 | 22.162 | 555 | 360 | 13 | 112 | 659 | 65 | 554 | 1.67e-18 | 90.1 |
MS.gene070492.t1 | MTR_7g100390 | 23.385 | 449 | 286 | 11 | 203 | 626 | 42 | 457 | 7.03e-18 | 87.8 |
MS.gene070492.t1 | MTR_1g069110 | 26.966 | 445 | 251 | 19 | 257 | 659 | 30 | 442 | 2.41e-17 | 85.9 |
MS.gene070492.t1 | MTR_1g032100 | 22.793 | 487 | 310 | 14 | 207 | 665 | 53 | 501 | 1.16e-16 | 84.0 |
MS.gene070492.t1 | MTR_4g062100 | 23.139 | 497 | 332 | 17 | 185 | 657 | 45 | 515 | 1.56e-16 | 83.6 |
MS.gene070492.t1 | MTR_7g117620 | 26.253 | 419 | 260 | 18 | 241 | 646 | 116 | 498 | 7.96e-16 | 81.3 |
MS.gene070492.t1 | MTR_2g101310 | 22.803 | 478 | 290 | 15 | 248 | 659 | 145 | 609 | 3.36e-15 | 79.7 |
MS.gene070492.t1 | MTR_8g105260 | 22.646 | 446 | 281 | 11 | 207 | 626 | 60 | 467 | 9.57e-13 | 71.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070492.t1 | AT4G03500 | 30.135 | 594 | 344 | 11 | 82 | 668 | 80 | 609 | 8.95e-67 | 231 |
MS.gene070492.t1 | AT4G03500 | 30.135 | 594 | 344 | 11 | 82 | 668 | 80 | 609 | 8.95e-67 | 231 |
MS.gene070492.t1 | AT4G03500 | 30.135 | 594 | 344 | 11 | 82 | 668 | 103 | 632 | 1.55e-66 | 231 |
MS.gene070492.t1 | AT1G03670 | 29.917 | 605 | 333 | 16 | 82 | 669 | 73 | 603 | 2.41e-65 | 227 |
MS.gene070492.t1 | AT4G03460 | 31.137 | 607 | 337 | 11 | 82 | 673 | 81 | 621 | 4.81e-65 | 226 |
MS.gene070492.t1 | AT4G03460 | 30.528 | 606 | 340 | 11 | 83 | 673 | 50 | 589 | 5.30e-62 | 217 |
MS.gene070492.t1 | AT4G03490 | 27.760 | 634 | 356 | 17 | 78 | 673 | 23 | 592 | 2.73e-52 | 191 |
MS.gene070492.t1 | AT4G03490 | 27.760 | 634 | 356 | 17 | 78 | 673 | 33 | 602 | 2.83e-52 | 191 |
MS.gene070492.t1 | AT4G03490 | 28.197 | 610 | 332 | 19 | 82 | 653 | 37 | 578 | 1.06e-49 | 185 |
MS.gene070492.t1 | AT4G03440 | 27.734 | 631 | 369 | 19 | 58 | 647 | 100 | 684 | 1.43e-45 | 174 |
MS.gene070492.t1 | AT4G03440 | 27.734 | 631 | 369 | 19 | 58 | 647 | 93 | 677 | 1.43e-45 | 174 |
MS.gene070492.t1 | AT4G03440 | 27.734 | 631 | 369 | 19 | 58 | 647 | 93 | 677 | 1.43e-45 | 174 |
MS.gene070492.t1 | AT4G03450 | 28.447 | 573 | 332 | 13 | 70 | 625 | 60 | 571 | 7.00e-45 | 170 |
MS.gene070492.t1 | AT4G03450 | 28.171 | 607 | 350 | 15 | 70 | 659 | 60 | 597 | 7.61e-45 | 170 |
MS.gene070492.t1 | AT4G03470 | 26.461 | 616 | 365 | 19 | 66 | 663 | 104 | 649 | 6.07e-40 | 156 |
MS.gene070492.t1 | AT4G03480 | 27.145 | 571 | 321 | 16 | 58 | 579 | 132 | 656 | 3.78e-39 | 154 |
MS.gene070492.t1 | AT4G03480 | 27.003 | 574 | 321 | 16 | 58 | 579 | 132 | 659 | 9.85e-39 | 152 |
MS.gene070492.t1 | AT4G14390 | 25.427 | 586 | 348 | 14 | 72 | 636 | 123 | 640 | 8.71e-37 | 147 |
MS.gene070492.t1 | AT4G14390 | 25.554 | 587 | 347 | 14 | 72 | 636 | 123 | 641 | 8.92e-37 | 147 |
MS.gene070492.t1 | AT4G14390 | 25.427 | 586 | 348 | 14 | 72 | 636 | 104 | 621 | 9.55e-37 | 147 |
MS.gene070492.t1 | AT4G05040 | 27.362 | 508 | 286 | 11 | 65 | 557 | 99 | 538 | 2.42e-32 | 132 |
MS.gene070492.t1 | AT4G05040 | 27.362 | 508 | 286 | 11 | 65 | 557 | 99 | 538 | 2.42e-32 | 132 |
MS.gene070492.t1 | AT4G05040 | 27.362 | 508 | 286 | 11 | 65 | 557 | 99 | 538 | 2.42e-32 | 132 |
MS.gene070492.t1 | AT4G05040 | 27.362 | 508 | 286 | 11 | 65 | 557 | 99 | 538 | 2.42e-32 | 132 |
MS.gene070492.t1 | AT4G05040 | 27.362 | 508 | 286 | 11 | 65 | 557 | 99 | 538 | 2.42e-32 | 132 |
MS.gene070492.t1 | AT4G05040 | 27.362 | 508 | 286 | 11 | 65 | 557 | 99 | 538 | 2.42e-32 | 132 |
MS.gene070492.t1 | AT4G05040 | 27.362 | 508 | 286 | 11 | 65 | 557 | 99 | 538 | 2.42e-32 | 132 |
MS.gene070492.t1 | AT4G03490 | 30.056 | 356 | 192 | 13 | 82 | 405 | 27 | 357 | 1.20e-29 | 125 |
MS.gene070492.t1 | AT4G03490 | 25.255 | 392 | 223 | 14 | 306 | 653 | 165 | 530 | 1.22e-14 | 78.2 |
MS.gene070492.t1 | AT4G03490 | 30.056 | 356 | 192 | 13 | 82 | 405 | 17 | 347 | 2.43e-29 | 124 |
MS.gene070492.t1 | AT4G03490 | 25.255 | 392 | 223 | 14 | 306 | 653 | 155 | 520 | 1.13e-14 | 78.2 |
MS.gene070492.t1 | AT4G14400 | 29.474 | 380 | 217 | 15 | 70 | 431 | 90 | 436 | 1.27e-27 | 119 |
MS.gene070492.t1 | AT4G14400 | 29.211 | 380 | 218 | 14 | 70 | 431 | 24 | 370 | 1.43e-27 | 118 |
MS.gene070492.t1 | AT4G14400 | 29.211 | 380 | 218 | 14 | 70 | 431 | 24 | 370 | 1.43e-27 | 118 |
MS.gene070492.t1 | AT4G14390 | 27.446 | 368 | 229 | 10 | 72 | 424 | 104 | 448 | 4.95e-27 | 116 |
MS.gene070492.t1 | AT3G12360 | 23.077 | 559 | 346 | 17 | 114 | 659 | 61 | 548 | 3.80e-20 | 95.1 |
MS.gene070492.t1 | AT3G12360 | 23.077 | 559 | 346 | 17 | 114 | 659 | 73 | 560 | 4.28e-20 | 95.1 |
MS.gene070492.t1 | AT5G60070 | 24.224 | 483 | 307 | 17 | 207 | 659 | 70 | 523 | 4.32e-18 | 88.6 |
MS.gene070492.t1 | AT1G07710 | 24.565 | 460 | 290 | 14 | 207 | 641 | 63 | 490 | 5.44e-18 | 88.2 |
MS.gene070492.t1 | AT1G07710 | 24.565 | 460 | 290 | 14 | 207 | 641 | 63 | 490 | 5.44e-18 | 88.2 |
MS.gene070492.t1 | AT2G31820 | 24.865 | 555 | 314 | 19 | 99 | 632 | 128 | 600 | 1.65e-17 | 87.0 |
MS.gene070492.t1 | AT1G34050 | 21.968 | 569 | 369 | 15 | 109 | 669 | 48 | 549 | 6.54e-17 | 85.1 |
MS.gene070492.t1 | AT1G10340 | 23.992 | 521 | 283 | 18 | 82 | 578 | 38 | 469 | 1.10e-15 | 81.3 |
MS.gene070492.t1 | AT2G24600 | 25.153 | 489 | 285 | 17 | 115 | 578 | 37 | 469 | 1.42e-15 | 80.9 |
MS.gene070492.t1 | AT2G24600 | 25.153 | 489 | 285 | 17 | 115 | 578 | 37 | 469 | 1.42e-15 | 80.9 |
MS.gene070492.t1 | AT5G02620 | 23.491 | 464 | 293 | 12 | 203 | 633 | 49 | 483 | 3.70e-15 | 79.3 |
MS.gene070492.t1 | AT5G02620 | 23.491 | 464 | 293 | 12 | 203 | 633 | 49 | 483 | 3.70e-15 | 79.3 |
MS.gene070492.t1 | AT5G02620 | 23.491 | 464 | 293 | 12 | 203 | 633 | 49 | 483 | 3.70e-15 | 79.3 |
MS.gene070492.t1 | AT1G10340 | 25.394 | 508 | 289 | 21 | 100 | 578 | 19 | 465 | 2.42e-14 | 77.0 |
MS.gene070492.t1 | AT2G24600 | 24.178 | 517 | 305 | 18 | 115 | 606 | 37 | 491 | 4.18e-14 | 75.9 |
MS.gene070492.t1 | AT2G24600 | 24.178 | 517 | 305 | 18 | 115 | 606 | 37 | 491 | 4.18e-14 | 75.9 |
MS.gene070492.t1 | AT1G05640 | 25.513 | 439 | 276 | 16 | 241 | 659 | 188 | 595 | 5.65e-14 | 75.9 |
MS.gene070492.t1 | AT5G54710 | 23.345 | 574 | 370 | 17 | 88 | 643 | 40 | 561 | 3.71e-13 | 73.2 |
MS.gene070492.t1 | AT5G54710 | 22.414 | 638 | 389 | 17 | 72 | 643 | 9 | 606 | 4.06e-13 | 73.2 |
MS.gene070492.t1 | AT5G02620 | 22.793 | 487 | 291 | 14 | 203 | 633 | 49 | 506 | 1.08e-12 | 71.6 |
MS.gene070492.t1 | AT5G02620 | 22.793 | 487 | 291 | 14 | 203 | 633 | 49 | 506 | 1.08e-12 | 71.6 |
MS.gene070492.t1 | AT2G01680 | 22.249 | 409 | 254 | 12 | 278 | 659 | 131 | 502 | 2.11e-12 | 70.5 |
Find 120 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCACTGTCTTTGGCTTTCA+TGG | 0.097564 | 5.4:-67860696 | MS.gene070492:CDS |
TGCTCTCATCTCACTGTCTT+TGG | 0.207336 | 5.4:-67860705 | MS.gene070492:CDS |
GTGCTACAATCCTCCTCTTT+TGG | 0.218883 | 5.4:-67860793 | MS.gene070492:CDS |
TTGGTTGGCCTATCTATTTA+TGG | 0.227074 | 5.4:-67860642 | MS.gene070492:CDS |
CCATATGATGCTAGATGAAT+TGG | 0.261121 | 5.4:+67861745 | None:intergenic |
CTACTGAAGCAGTGATTATA+AGG | 0.264237 | 5.4:+67860927 | None:intergenic |
CTGTCTTTGGCTTTCATGGC+TGG | 0.281772 | 5.4:-67860692 | MS.gene070492:CDS |
CCCTCCGGCTTAGCGTTGTT+GGG | 0.303683 | 5.4:+67862173 | None:intergenic |
AGGAAATACTCCTTTGCTTC+TGG | 0.312272 | 5.4:-67861530 | MS.gene070492:CDS |
AAAATAGTAATGCCAATTCT+TGG | 0.318642 | 5.4:-67860731 | MS.gene070492:CDS |
ATTGGATACACATTGTCAAT+AGG | 0.321717 | 5.4:+67862746 | None:intergenic |
ACCATTCAAAGGGACAAATA+TGG | 0.328586 | 5.4:-67861775 | MS.gene070492:CDS |
TCAGTGCTACAAACTTTAAC+AGG | 0.331527 | 5.4:+67862429 | None:intergenic |
CCTCTTCTTTAACAGAAATC+AGG | 0.336583 | 5.4:-67862664 | MS.gene070492:CDS |
TCCCTCCGGCTTAGCGTTGT+TGG | 0.348634 | 5.4:+67862172 | None:intergenic |
CTGTTATCAGTGAACTTACT+TGG | 0.359026 | 5.4:-67860661 | MS.gene070492:CDS |
GCAAAATTAACAACATCAAA+TGG | 0.360251 | 5.4:-67862458 | MS.gene070492:CDS |
TTGGATACACATTGTCAATA+GGG | 0.366370 | 5.4:+67862747 | None:intergenic |
TTTATCATCCTATCAAGTTC+AGG | 0.370811 | 5.4:+67861568 | None:intergenic |
GAGGAGGATTGTAGCACTAA+TGG | 0.394706 | 5.4:+67860799 | None:intergenic |
CTTCATGATTGCTGCAACAA+GGG | 0.395436 | 5.4:+67862142 | None:intergenic |
CAAAATTAACAACATCAAAT+GGG | 0.401401 | 5.4:-67862457 | MS.gene070492:CDS |
ATGAGAGCAATTCCAAGAAT+TGG | 0.406320 | 5.4:+67860719 | None:intergenic |
TTCAATATCACTTTCATCAC+TGG | 0.408380 | 5.4:+67862805 | None:intergenic |
TCTGTTAAAGAAGAGGAATA+TGG | 0.414714 | 5.4:+67862671 | None:intergenic |
ACCATATTTGTCCCTTTGAA+TGG | 0.422176 | 5.4:+67861774 | None:intergenic |
TACAAGCATTTATTTAATCA+AGG | 0.424041 | 5.4:-67863390 | MS.gene070492:CDS |
TCTGACACCAAACGACCTAT+AGG | 0.432161 | 5.4:-67861076 | MS.gene070492:CDS |
CAACTAATCTTCTAAAACTC+AGG | 0.435810 | 5.4:+67861161 | None:intergenic |
ACTTGGATTAACTGACTTGG+CGG | 0.440496 | 5.4:-67860765 | MS.gene070492:CDS |
TTATAATGTTCTTCGGAGCC+TGG | 0.444014 | 5.4:+67860983 | None:intergenic |
ACTTTGTCCTATAGGTCGTT+TGG | 0.445352 | 5.4:+67861069 | None:intergenic |
TGACAACTTCAAGAGCTGTT+TGG | 0.453693 | 5.4:+67861425 | None:intergenic |
CTTTCATCACTGGCATCAAA+TGG | 0.455137 | 5.4:+67862815 | None:intergenic |
CCAATTCATCTAGCATCATA+TGG | 0.458127 | 5.4:-67861745 | MS.gene070492:CDS |
AGTTACAACCATAAATAGAT+AGG | 0.459512 | 5.4:+67860634 | None:intergenic |
TTCAACTCAAACAAAAGTGT+TGG | 0.460102 | 5.4:+67862560 | None:intergenic |
TCCCCTTTCTTATACTAGCA+TGG | 0.460875 | 5.4:-67860520 | MS.gene070492:CDS |
GGAAGCAGTCAGAGTAATCA+TGG | 0.469912 | 5.4:-67862204 | MS.gene070492:CDS |
TTCGAGTCACTTTGTCCTAT+AGG | 0.471538 | 5.4:+67861061 | None:intergenic |
TGTCGTGAGAAGAGGAGAAT+TGG | 0.471703 | 5.4:-67862365 | MS.gene070492:CDS |
TACTACAAAAGCAGGAAAGT+TGG | 0.472694 | 5.4:-67861900 | MS.gene070492:CDS |
CTTAATCAATTATACAGAGC+TGG | 0.473221 | 5.4:-67862716 | MS.gene070492:CDS |
TTGATGATGAGGGGAGGAAA+AGG | 0.474134 | 5.4:+67860573 | None:intergenic |
TATCAGTGAACTTACTTGGT+TGG | 0.481569 | 5.4:-67860657 | MS.gene070492:CDS |
TGATAGGATGATAAATCAAA+AGG | 0.490334 | 5.4:-67861560 | MS.gene070492:CDS |
GTCGAATTCCTGAACTTGAT+AGG | 0.496981 | 5.4:-67861576 | MS.gene070492:CDS |
TAGTATAAGAAAGGGGAAGT+AGG | 0.498465 | 5.4:+67860526 | None:intergenic |
CCACTTTGACGATGAATCCT+CGG | 0.500337 | 5.4:+67862304 | None:intergenic |
TCTTCATGATTGCTGCAACA+AGG | 0.502014 | 5.4:+67862141 | None:intergenic |
AGAATTTGAGTCACTTGAGA+TGG | 0.507290 | 5.4:+67862776 | None:intergenic |
CCTGATTTCTGTTAAAGAAG+AGG | 0.508034 | 5.4:+67862664 | None:intergenic |
ATCCAAGTGTTGCCCAAAAG+AGG | 0.511836 | 5.4:+67860780 | None:intergenic |
AGCCATGCTAGTATAAGAAA+GGG | 0.515852 | 5.4:+67860518 | None:intergenic |
GTAAATGTTGCACCATTCAA+AGG | 0.524966 | 5.4:-67861786 | MS.gene070492:CDS |
GCATCGGTAGGTTACCTTGA+AGG | 0.528607 | 5.4:-67861832 | MS.gene070492:CDS |
AATTGATTAAGCAAATCCAT+TGG | 0.531208 | 5.4:+67862728 | None:intergenic |
CGTGAGAAGAGGAGAATTGG+CGG | 0.532861 | 5.4:-67862362 | MS.gene070492:CDS |
GAGCCATGCTAGTATAAGAA+AGG | 0.533660 | 5.4:+67860517 | None:intergenic |
GGCATTAGCAAACTCCGCAT+TGG | 0.535602 | 5.4:+67862692 | None:intergenic |
TTGCCCCAACAACGCTAAGC+CGG | 0.535732 | 5.4:-67862177 | MS.gene070492:CDS |
TGATGAAGATAATGAAAGCT+TGG | 0.535914 | 5.4:+67860840 | None:intergenic |
AACACTTGGATTAACTGACT+TGG | 0.536609 | 5.4:-67860768 | MS.gene070492:CDS |
GTGAGAAGAGGAGAATTGGC+GGG | 0.536739 | 5.4:-67862361 | MS.gene070492:CDS |
TCCACTTCATTATGCAGCAT+CGG | 0.539073 | 5.4:-67861848 | MS.gene070492:CDS |
GAATATTACGCTTAAATGAA+AGG | 0.539847 | 5.4:+67861659 | None:intergenic |
CATATGATGCTAGATGAATT+GGG | 0.540546 | 5.4:+67861746 | None:intergenic |
GCAATCATGAAGAAGAATCA+AGG | 0.540828 | 5.4:-67862131 | MS.gene070492:intron |
CTACATATAGCAGCTTGGTA+TGG | 0.542793 | 5.4:-67862620 | MS.gene070492:CDS |
TACTGAAGCAGTGATTATAA+GGG | 0.546627 | 5.4:+67860928 | None:intergenic |
TTCTAGTTGATGATGAGGGG+AGG | 0.549260 | 5.4:+67860567 | None:intergenic |
TAAATGTTGCACCATTCAAA+GGG | 0.553410 | 5.4:-67861785 | MS.gene070492:CDS |
TTTAACATGGGATGAAAGAG+TGG | 0.555233 | 5.4:-67861473 | MS.gene070492:CDS |
CTACTTACCCTTCTCGTGGG+TGG | 0.556353 | 5.4:+67861382 | None:intergenic |
CCTCCGGCTTAGCGTTGTTG+GGG | 0.558047 | 5.4:+67862174 | None:intergenic |
AAGCGACATACTACAAAAGC+AGG | 0.558604 | 5.4:-67861908 | MS.gene070492:CDS |
TATAGGTCGTTTGGTGTCAG+AGG | 0.559162 | 5.4:+67861078 | None:intergenic |
GCATTACTCTGCTCTAATTG+TGG | 0.561826 | 5.4:+67861106 | None:intergenic |
AATTCTACTTACCCTTCTCG+TGG | 0.564631 | 5.4:+67861378 | None:intergenic |
TTCATGATTGCTGCAACAAG+GGG | 0.566337 | 5.4:+67862143 | None:intergenic |
CTTGTAGCACTGAATTCTGC+TGG | 0.570512 | 5.4:-67861190 | MS.gene070492:CDS |
CAATGTTATGTCGTGAGAAG+AGG | 0.570834 | 5.4:-67862373 | MS.gene070492:CDS |
TTCGTAATCCACCCACGAGA+AGG | 0.570876 | 5.4:-67861390 | MS.gene070492:CDS |
GCTGTTCCAGGTGAAGCGGA+TGG | 0.571638 | 5.4:-67860893 | MS.gene070492:CDS |
TGAAAGGTCAAGCATTTGTG+TGG | 0.574106 | 5.4:+67861675 | None:intergenic |
CTTGGAACATTGCATGACAT+AGG | 0.575152 | 5.4:+67860858 | None:intergenic |
TTACCTTGCTGTTGATAGTG+AGG | 0.576578 | 5.4:-67862231 | MS.gene070492:CDS |
TGCTGTTGATAGTGAGGACA+AGG | 0.582035 | 5.4:-67862225 | MS.gene070492:CDS |
ACCGATGCTGCATAATGAAG+TGG | 0.584059 | 5.4:+67861847 | None:intergenic |
TATTGACAATGTGTATCCAA+TGG | 0.584688 | 5.4:-67862744 | MS.gene070492:CDS |
ACAAGGGGCGATAATCCCTC+CGG | 0.587476 | 5.4:+67862158 | None:intergenic |
AACTCTTCACTGCTTCGACA+TGG | 0.589699 | 5.4:+67861719 | None:intergenic |
CTTCATTATGCAGCATCGGT+AGG | 0.591319 | 5.4:-67861844 | MS.gene070492:CDS |
TCGTAATCCACCCACGAGAA+GGG | 0.592425 | 5.4:-67861389 | MS.gene070492:intron |
CCCAACAACGCTAAGCCGGA+GGG | 0.597011 | 5.4:-67862173 | MS.gene070492:CDS |
CCCCAACAACGCTAAGCCGG+AGG | 0.603771 | 5.4:-67862174 | MS.gene070492:CDS |
ATTCTACTTACCCTTCTCGT+GGG | 0.603839 | 5.4:+67861379 | None:intergenic |
CCGAGGATTCATCGTCAAAG+TGG | 0.606086 | 5.4:-67862304 | MS.gene070492:CDS |
TTACATATTGCTGCAAGAGG+TGG | 0.606317 | 5.4:-67862518 | MS.gene070492:CDS |
AGGAAACACAATGTTTCATG+AGG | 0.620521 | 5.4:-67862396 | MS.gene070492:CDS |
GAAGTAGGAAATGTATCGCA+AGG | 0.625002 | 5.4:+67860541 | None:intergenic |
GAAAGGTCAAGCATTTGTGT+GGG | 0.626417 | 5.4:+67861676 | None:intergenic |
GCGTTACATATTGCTGCAAG+AGG | 0.633715 | 5.4:-67862521 | MS.gene070492:CDS |
CAAGTGTTGCCCAAAAGAGG+AGG | 0.636685 | 5.4:+67860783 | None:intergenic |
TGAGAAGAGGAGAATTGGCG+GGG | 0.638073 | 5.4:-67862360 | MS.gene070492:CDS |
ATAAATCAAAAGGATTACAA+AGG | 0.638699 | 5.4:-67861550 | MS.gene070492:CDS |
TTAAGATATTCAGATGACAT+CGG | 0.642960 | 5.4:-67863366 | MS.gene070492:intron |
CATGGTGCAGACACTCACAT+TGG | 0.643071 | 5.4:-67860957 | MS.gene070492:CDS |
CCAAGCTGCTATATGTAGCA+CGG | 0.645163 | 5.4:+67862625 | None:intergenic |
ATTCAACGGACACATATGAA+AGG | 0.649007 | 5.4:-67861873 | MS.gene070492:CDS |
AAAATTAACAACATCAAATG+GGG | 0.649454 | 5.4:-67862456 | MS.gene070492:CDS |
CCGTGCTACATATAGCAGCT+TGG | 0.650733 | 5.4:-67862625 | MS.gene070492:CDS |
ATTAACAACATCAAATGGGG+AGG | 0.651633 | 5.4:-67862453 | MS.gene070492:CDS |
TGAAAGAGTGGATCTTCATG+TGG | 0.669289 | 5.4:-67861461 | MS.gene070492:CDS |
TGTCCTCACTATCAACAGCA+AGG | 0.677293 | 5.4:+67862228 | None:intergenic |
GCCATGCTAGTATAAGAAAG+GGG | 0.679151 | 5.4:+67860519 | None:intergenic |
GGAAAGTTGGATACATTCAA+CGG | 0.680573 | 5.4:-67861887 | MS.gene070492:CDS |
ATTCATCTAGCATCATATGG+TGG | 0.697537 | 5.4:-67861742 | MS.gene070492:CDS |
TTGTGAGCTCTACAAAACCG+AGG | 0.719411 | 5.4:-67862321 | MS.gene070492:CDS |
TATACAGAGCTGGTCCAATG+CGG | 0.731832 | 5.4:-67862706 | MS.gene070492:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAAAATTATTATTTAATTTT+TGG | - | chr5.4:67861020-67861039 | MS.gene070492:CDS | 0.0% |
!! | AAAATTAAAGATTGTAAATA+TGG | + | chr5.4:67862598-67862617 | None:intergenic | 10.0% |
!! | AAATTAAAGATTGTAAATAT+GGG | + | chr5.4:67862597-67862616 | None:intergenic | 10.0% |
!!! | TATTTACAATCTTTAATTTT+AGG | - | chr5.4:67862598-67862617 | MS.gene070492:CDS | 10.0% |
!! | ATCTATTTGTCATATATAAA+AGG | + | chr5.4:67862669-67862688 | None:intergenic | 15.0% |
!! | TCTATTTGTCATATATAAAA+GGG | + | chr5.4:67862668-67862687 | None:intergenic | 15.0% |
!! | AAAATTAACAACATCAAATG+GGG | - | chr5.4:67861445-67861464 | MS.gene070492:CDS | 20.0% |
!! | ATAAATCAAAAGGATTACAA+AGG | - | chr5.4:67862351-67862370 | MS.gene070492:CDS | 20.0% |
!! | CAAAATTAACAACATCAAAT+GGG | - | chr5.4:67861444-67861463 | MS.gene070492:CDS | 20.0% |
!! | GTTAAATAAAAAACAGTCTT+GGG | + | chr5.4:67862414-67862433 | None:intergenic | 20.0% |
!! | TACAAGCATTTATTTAATCA+AGG | - | chr5.4:67860511-67860530 | MS.gene070492:CDS | 20.0% |
!! | TATAGCATTTAAGCTTAAAT+AGG | + | chr5.4:67860948-67860967 | None:intergenic | 20.0% |
!! | TGTTAAATAAAAAACAGTCT+TGG | + | chr5.4:67862415-67862434 | None:intergenic | 20.0% |
!! | TTCAAAAAAAAAAAGATAGC+CGG | + | chr5.4:67860981-67861000 | None:intergenic | 20.0% |
!!! | AGACTGTTTTTTATTTAACA+TGG | - | chr5.4:67862415-67862434 | MS.gene070492:CDS | 20.0% |
!!! | CATGTTTTTATAATGTTCTT+CGG | + | chr5.4:67862928-67862947 | None:intergenic | 20.0% |
!!! | GACTGTTTTTTATTTAACAT+GGG | - | chr5.4:67862416-67862435 | MS.gene070492:CDS | 20.0% |
!!! | GCTATCTTTTTTTTTTTGAA+AGG | - | chr5.4:67860981-67861000 | MS.gene070492:CDS | 20.0% |
!!! | TAGAATTCATTTTGAATGTT+AGG | - | chr5.4:67862539-67862558 | MS.gene070492:CDS | 20.0% |
! | AAAAAAAATGTGTAGTGTTG+TGG | + | chr5.4:67862893-67862912 | None:intergenic | 25.0% |
! | AAAAAAATGTGTAGTGTTGT+GGG | + | chr5.4:67862892-67862911 | None:intergenic | 25.0% |
! | AAAATAGTAATGCCAATTCT+TGG | - | chr5.4:67863170-67863189 | MS.gene070492:intron | 25.0% |
! | AAAGATTGTAAATATGGGAA+GGG | + | chr5.4:67862592-67862611 | None:intergenic | 25.0% |
! | AATTGATTAAGCAAATCCAT+TGG | + | chr5.4:67861176-67861195 | None:intergenic | 25.0% |
! | AGTTACAACCATAAATAGAT+AGG | + | chr5.4:67863270-67863289 | None:intergenic | 25.0% |
! | CGAAGAACATTATAAAAACA+TGG | - | chr5.4:67862926-67862945 | MS.gene070492:intron | 25.0% |
! | CTATATCGTTAAAAAGCTAT+TGG | - | chr5.4:67861412-67861431 | MS.gene070492:CDS | 25.0% |
! | GAATATTACGCTTAAATGAA+AGG | + | chr5.4:67862245-67862264 | None:intergenic | 25.0% |
! | GCAAAATTAACAACATCAAA+TGG | - | chr5.4:67861443-67861462 | MS.gene070492:CDS | 25.0% |
! | TAAAGATTGTAAATATGGGA+AGG | + | chr5.4:67862593-67862612 | None:intergenic | 25.0% |
! | TGATAGGATGATAAATCAAA+AGG | - | chr5.4:67862341-67862360 | MS.gene070492:CDS | 25.0% |
! | TTAAGATATTCAGATGACAT+CGG | - | chr5.4:67860535-67860554 | MS.gene070492:CDS | 25.0% |
!! | ATTCATTTTGAATGTTAGGA+TGG | - | chr5.4:67862543-67862562 | MS.gene070492:CDS | 25.0% |
!! | TTTATTAGAAAAGACTGGTT+TGG | - | chr5.4:67860642-67860661 | MS.gene070492:CDS | 25.0% |
!!! | ACACATTTTTTTTTTTTGCC+AGG | - | chr5.4:67862900-67862919 | MS.gene070492:intron | 25.0% |
!!! | CTTGTTTTATTAGAAAAGAC+TGG | - | chr5.4:67860637-67860656 | MS.gene070492:CDS | 25.0% |
AACACAACCACAACAAAAAT+CGG | + | chr5.4:67863293-67863312 | None:intergenic | 30.0% | |
ATTGGATACACATTGTCAAT+AGG | + | chr5.4:67861158-67861177 | None:intergenic | 30.0% | |
CAAATAGATGTAATGTTTGC+AGG | - | chr5.4:67862680-67862699 | MS.gene070492:CDS | 30.0% | |
CATATGATGCTAGATGAATT+GGG | + | chr5.4:67862158-67862177 | None:intergenic | 30.0% | |
CGCATATTAGATACATGTTA+AGG | - | chr5.4:67861831-67861850 | MS.gene070492:CDS | 30.0% | |
CTTAATCAATTATACAGAGC+TGG | - | chr5.4:67861185-67861204 | MS.gene070492:CDS | 30.0% | |
TAAATGTTGCACCATTCAAA+GGG | - | chr5.4:67862116-67862135 | MS.gene070492:intron | 30.0% | |
TACTGAAGCAGTGATTATAA+GGG | + | chr5.4:67862976-67862995 | None:intergenic | 30.0% | |
TATTGACAATGTGTATCCAA+TGG | - | chr5.4:67861157-67861176 | MS.gene070492:CDS | 30.0% | |
TCTGTTAAAGAAGAGGAATA+TGG | + | chr5.4:67861233-67861252 | None:intergenic | 30.0% | |
TGATGAAGATAATGAAAGCT+TGG | + | chr5.4:67863064-67863083 | None:intergenic | 30.0% | |
TTCAATATCACTTTCATCAC+TGG | + | chr5.4:67861099-67861118 | None:intergenic | 30.0% | |
TTGGATACACATTGTCAATA+GGG | + | chr5.4:67861157-67861176 | None:intergenic | 30.0% | |
TTTATCATCCTATCAAGTTC+AGG | + | chr5.4:67862336-67862355 | None:intergenic | 30.0% | |
! | ATTTTCTCACAAGTTTACAG+TGG | - | chr5.4:67860673-67860692 | MS.gene070492:CDS | 30.0% |
! | TTCAACTCAAACAAAAGTGT+TGG | + | chr5.4:67861344-67861363 | None:intergenic | 30.0% |
!! | CAACTAATCTTCTAAAACTC+AGG | + | chr5.4:67862743-67862762 | None:intergenic | 30.0% |
!!! | AAGGCGTTGAATTTTTACTT+CGG | - | chr5.4:67862088-67862107 | MS.gene070492:intron | 30.0% |
!!! | ATTTTCTAGTTGATGATGAG+GGG | + | chr5.4:67863340-67863359 | None:intergenic | 30.0% |
!!! | GATTTTCTAGTTGATGATGA+GGG | + | chr5.4:67863341-67863360 | None:intergenic | 30.0% |
AACACTTGGATTAACTGACT+TGG | - | chr5.4:67863133-67863152 | MS.gene070492:intron | 35.0% | |
AATGCTATAAGCTAGCTAAC+CGG | - | chr5.4:67860959-67860978 | MS.gene070492:CDS | 35.0% | |
AATGTTAAGATGTGCCCTAA+AGG | - | chr5.4:67861808-67861827 | MS.gene070492:CDS | 35.0% | |
AATGTTAGGATGGATGTTTC+AGG | - | chr5.4:67862553-67862572 | MS.gene070492:CDS | 35.0% | |
ACCATATTTGTCCCTTTGAA+TGG | + | chr5.4:67862130-67862149 | None:intergenic | 35.0% | |
ACCATTCAAAGGGACAAATA+TGG | - | chr5.4:67862126-67862145 | MS.gene070492:intron | 35.0% | |
AGAATTTGAGTCACTTGAGA+TGG | + | chr5.4:67861128-67861147 | None:intergenic | 35.0% | |
AGCCATGCTAGTATAAGAAA+GGG | + | chr5.4:67863386-67863405 | None:intergenic | 35.0% | |
AGGAAACACAATGTTTCATG+AGG | - | chr5.4:67861505-67861524 | MS.gene070492:CDS | 35.0% | |
ATCGGTGAGTTAAAACGATT+AGG | - | chr5.4:67860553-67860572 | MS.gene070492:CDS | 35.0% | |
ATGAGAGCAATTCCAAGAAT+TGG | + | chr5.4:67863185-67863204 | None:intergenic | 35.0% | |
ATTAACAACATCAAATGGGG+AGG | - | chr5.4:67861448-67861467 | MS.gene070492:CDS | 35.0% | |
ATTCAACGGACACATATGAA+AGG | - | chr5.4:67862028-67862047 | MS.gene070492:intron | 35.0% | |
ATTCATCTAGCATCATATGG+TGG | - | chr5.4:67862159-67862178 | MS.gene070492:CDS | 35.0% | |
CCAATTCATCTAGCATCATA+TGG | - | chr5.4:67862156-67862175 | MS.gene070492:CDS | 35.0% | |
CCATATGATGCTAGATGAAT+TGG | + | chr5.4:67862159-67862178 | None:intergenic | 35.0% | |
CCTCTTCTTTAACAGAAATC+AGG | - | chr5.4:67861237-67861256 | MS.gene070492:intron | 35.0% | |
CCTGATTTCTGTTAAAGAAG+AGG | + | chr5.4:67861240-67861259 | None:intergenic | 35.0% | |
CTACTGAAGCAGTGATTATA+AGG | + | chr5.4:67862977-67862996 | None:intergenic | 35.0% | |
CTGTTATCAGTGAACTTACT+TGG | - | chr5.4:67863240-67863259 | MS.gene070492:intron | 35.0% | |
CTTCATGTTGCAGCAAAAAA+TGG | - | chr5.4:67862264-67862283 | MS.gene070492:CDS | 35.0% | |
GCAATCATGAAGAAGAATCA+AGG | - | chr5.4:67861770-67861789 | MS.gene070492:CDS | 35.0% | |
GGAAAGTTGGATACATTCAA+CGG | - | chr5.4:67862014-67862033 | MS.gene070492:intron | 35.0% | |
GTAAAAATTCAACGCCTTCA+AGG | + | chr5.4:67862086-67862105 | None:intergenic | 35.0% | |
GTAAATGTTGCACCATTCAA+AGG | - | chr5.4:67862115-67862134 | MS.gene070492:intron | 35.0% | |
GTATCTAATATGCGCCTTTA+GGG | + | chr5.4:67861825-67861844 | None:intergenic | 35.0% | |
TACTACAAAAGCAGGAAAGT+TGG | - | chr5.4:67862001-67862020 | MS.gene070492:intron | 35.0% | |
TAGTATAAGAAAGGGGAAGT+AGG | + | chr5.4:67863378-67863397 | None:intergenic | 35.0% | |
TATCAGTGAACTTACTTGGT+TGG | - | chr5.4:67863244-67863263 | MS.gene070492:intron | 35.0% | |
TCAGTGCTACAAACTTTAAC+AGG | + | chr5.4:67861475-67861494 | None:intergenic | 35.0% | |
TGTATCTAATATGCGCCTTT+AGG | + | chr5.4:67861826-67861845 | None:intergenic | 35.0% | |
TTTAACATGGGATGAAAGAG+TGG | - | chr5.4:67862428-67862447 | MS.gene070492:CDS | 35.0% | |
! | TGTAACTCCGATTTTTGTTG+TGG | - | chr5.4:67863283-67863302 | MS.gene070492:intron | 35.0% |
!! | AGAAAAGACTGGTTTGGTAA+AGG | - | chr5.4:67860648-67860667 | MS.gene070492:CDS | 35.0% |
!! | TTGGTTGGCCTATCTATTTA+TGG | - | chr5.4:67863259-67863278 | MS.gene070492:intron | 35.0% |
!!! | GGATTTTCTAGTTGATGATG+AGG | + | chr5.4:67863342-67863361 | None:intergenic | 35.0% |
AAGCGACATACTACAAAAGC+AGG | - | chr5.4:67861993-67862012 | MS.gene070492:intron | 40.0% | |
AATTCTACTTACCCTTCTCG+TGG | + | chr5.4:67862526-67862545 | None:intergenic | 40.0% | |
ACTTTGTCCTATAGGTCGTT+TGG | + | chr5.4:67862835-67862854 | None:intergenic | 40.0% | |
AGGAAATACTCCTTTGCTTC+TGG | - | chr5.4:67862371-67862390 | MS.gene070492:CDS | 40.0% | |
ATTCTACTTACCCTTCTCGT+GGG | + | chr5.4:67862525-67862544 | None:intergenic | 40.0% | |
CAATGTTATGTCGTGAGAAG+AGG | - | chr5.4:67861528-67861547 | MS.gene070492:CDS | 40.0% | |
CTACATATAGCAGCTTGGTA+TGG | - | chr5.4:67861281-67861300 | MS.gene070492:intron | 40.0% | |
CTTCATGATTGCTGCAACAA+GGG | + | chr5.4:67861762-67861781 | None:intergenic | 40.0% | |
CTTGGAACATTGCATGACAT+AGG | + | chr5.4:67863046-67863065 | None:intergenic | 40.0% | |
CTTTCATCACTGGCATCAAA+TGG | + | chr5.4:67861089-67861108 | None:intergenic | 40.0% | |
GAAAGGTCAAGCATTTGTGT+GGG | + | chr5.4:67862228-67862247 | None:intergenic | 40.0% | |
GAAGTAGGAAATGTATCGCA+AGG | + | chr5.4:67863363-67863382 | None:intergenic | 40.0% | |
GAGCCATGCTAGTATAAGAA+AGG | + | chr5.4:67863387-67863406 | None:intergenic | 40.0% | |
GCATTACTCTGCTCTAATTG+TGG | + | chr5.4:67862798-67862817 | None:intergenic | 40.0% | |
GCCATGCTAGTATAAGAAAG+GGG | + | chr5.4:67863385-67863404 | None:intergenic | 40.0% | |
GTCGAATTCCTGAACTTGAT+AGG | - | chr5.4:67862325-67862344 | MS.gene070492:CDS | 40.0% | |
TCCACTTCATTATGCAGCAT+CGG | - | chr5.4:67862053-67862072 | MS.gene070492:intron | 40.0% | |
TCCCCTTTCTTATACTAGCA+TGG | - | chr5.4:67863381-67863400 | MS.gene070492:CDS | 40.0% | |
TCTTCATGATTGCTGCAACA+AGG | + | chr5.4:67861763-67861782 | None:intergenic | 40.0% | |
TGAAAGAGTGGATCTTCATG+TGG | - | chr5.4:67862440-67862459 | MS.gene070492:CDS | 40.0% | |
TGAAAGGTCAAGCATTTGTG+TGG | + | chr5.4:67862229-67862248 | None:intergenic | 40.0% | |
TGACAACTTCAAGAGCTGTT+TGG | + | chr5.4:67862479-67862498 | None:intergenic | 40.0% | |
TTACATATTGCTGCAAGAGG+TGG | - | chr5.4:67861383-67861402 | MS.gene070492:intron | 40.0% | |
TTATAATGTTCTTCGGAGCC+TGG | + | chr5.4:67862921-67862940 | None:intergenic | 40.0% | |
TTCATGATTGCTGCAACAAG+GGG | + | chr5.4:67861761-67861780 | None:intergenic | 40.0% | |
! | GTAGCACTGAAAAACGTTGA+AGG | - | chr5.4:67861485-67861504 | MS.gene070492:CDS | 40.0% |
! | TGCTACAATCCTCCTCTTTT+GGG | - | chr5.4:67863109-67863128 | MS.gene070492:intron | 40.0% |
! | TTCGAGTCACTTTGTCCTAT+AGG | + | chr5.4:67862843-67862862 | None:intergenic | 40.0% |
!! | ACTTGGATTAACTGACTTGG+CGG | - | chr5.4:67863136-67863155 | MS.gene070492:intron | 40.0% |
!! | TTACCTTGCTGTTGATAGTG+AGG | - | chr5.4:67861670-67861689 | MS.gene070492:CDS | 40.0% |
AACTCTTCACTGCTTCGACA+TGG | + | chr5.4:67862185-67862204 | None:intergenic | 45.0% | |
ACCGATGCTGCATAATGAAG+TGG | + | chr5.4:67862057-67862076 | None:intergenic | 45.0% | |
CCAAGCTGCTATATGTAGCA+CGG | + | chr5.4:67861279-67861298 | None:intergenic | 45.0% | |
CCACTTTGACGATGAATCCT+CGG | + | chr5.4:67861600-67861619 | None:intergenic | 45.0% | |
GAGGAGGATTGTAGCACTAA+TGG | + | chr5.4:67863105-67863124 | None:intergenic | 45.0% | |
GCGTTACATATTGCTGCAAG+AGG | - | chr5.4:67861380-67861399 | MS.gene070492:intron | 45.0% | |
GGAAGCAGTCAGAGTAATCA+TGG | - | chr5.4:67861697-67861716 | MS.gene070492:CDS | 45.0% | |
TAAGTTGCAACTGCAGAGAG+TGG | - | chr5.4:67861062-67861081 | MS.gene070492:CDS | 45.0% | |
TATACAGAGCTGGTCCAATG+CGG | - | chr5.4:67861195-67861214 | MS.gene070492:CDS | 45.0% | |
TCTGACACCAAACGACCTAT+AGG | - | chr5.4:67862825-67862844 | MS.gene070492:CDS | 45.0% | |
TGCTCTCATCTCACTGTCTT+TGG | - | chr5.4:67863196-67863215 | MS.gene070492:intron | 45.0% | |
TGTCCTCACTATCAACAGCA+AGG | + | chr5.4:67861676-67861695 | None:intergenic | 45.0% | |
TGTCGTGAGAAGAGGAGAAT+TGG | - | chr5.4:67861536-67861555 | MS.gene070492:CDS | 45.0% | |
TTGTGAGCTCTACAAAACCG+AGG | - | chr5.4:67861580-67861599 | MS.gene070492:CDS | 45.0% | |
! | ATCCAAGTGTTGCCCAAAAG+AGG | + | chr5.4:67863124-67863143 | None:intergenic | 45.0% |
! | CTTGTAGCACTGAATTCTGC+TGG | - | chr5.4:67862711-67862730 | MS.gene070492:CDS | 45.0% |
! | GATTTTGCAGCCAGAAGCAA+AGG | + | chr5.4:67862384-67862403 | None:intergenic | 45.0% |
! | GTGCTACAATCCTCCTCTTT+TGG | - | chr5.4:67863108-67863127 | MS.gene070492:intron | 45.0% |
! | TGTAGCACGGTGTTTTTCGT+AGG | + | chr5.4:67861266-67861285 | None:intergenic | 45.0% |
!! | CTCACTGTCTTTGGCTTTCA+TGG | - | chr5.4:67863205-67863224 | MS.gene070492:intron | 45.0% |
!! | CTTCATTATGCAGCATCGGT+AGG | - | chr5.4:67862057-67862076 | MS.gene070492:intron | 45.0% |
!! | TATAGGTCGTTTGGTGTCAG+AGG | + | chr5.4:67862826-67862845 | None:intergenic | 45.0% |
!! | TGCTGTTGATAGTGAGGACA+AGG | - | chr5.4:67861676-67861695 | MS.gene070492:CDS | 45.0% |
!! | TTCTAGTTGATGATGAGGGG+AGG | + | chr5.4:67863337-67863356 | None:intergenic | 45.0% |
!! | TTGATGATGAGGGGAGGAAA+AGG | + | chr5.4:67863331-67863350 | None:intergenic | 45.0% |
!!! | TTTTGCTGTTCCAGGTGAAG+CGG | - | chr5.4:67863004-67863023 | MS.gene070492:intron | 45.0% |
CATGGTGCAGACACTCACAT+TGG | - | chr5.4:67862944-67862963 | MS.gene070492:intron | 50.0% | |
CCGAGGATTCATCGTCAAAG+TGG | - | chr5.4:67861597-67861616 | MS.gene070492:CDS | 50.0% | |
CCGTGCTACATATAGCAGCT+TGG | - | chr5.4:67861276-67861295 | MS.gene070492:intron | 50.0% | |
CGTGAGAAGAGGAGAATTGG+CGG | - | chr5.4:67861539-67861558 | MS.gene070492:CDS | 50.0% | |
GGCATTAGCAAACTCCGCAT+TGG | + | chr5.4:67861212-67861231 | None:intergenic | 50.0% | |
GTGAGAAGAGGAGAATTGGC+GGG | - | chr5.4:67861540-67861559 | MS.gene070492:CDS | 50.0% | |
TCGTAATCCACCCACGAGAA+GGG | - | chr5.4:67862512-67862531 | MS.gene070492:CDS | 50.0% | |
TGAGAAGAGGAGAATTGGCG+GGG | - | chr5.4:67861541-67861560 | MS.gene070492:CDS | 50.0% | |
TTCGTAATCCACCCACGAGA+AGG | - | chr5.4:67862511-67862530 | MS.gene070492:CDS | 50.0% | |
! | CAAGTGTTGCCCAAAAGAGG+AGG | + | chr5.4:67863121-67863140 | None:intergenic | 50.0% |
! | CTCCTCTTTTGGGCAACACT+TGG | - | chr5.4:67863119-67863138 | MS.gene070492:intron | 50.0% |
! | GCATCGGTAGGTTACCTTGA+AGG | - | chr5.4:67862069-67862088 | MS.gene070492:intron | 50.0% |
!! | CTGTCTTTGGCTTTCATGGC+TGG | - | chr5.4:67863209-67863228 | MS.gene070492:intron | 50.0% |
!!! | GCAGCATGTTTTGCTGTTCC+AGG | - | chr5.4:67862996-67863015 | MS.gene070492:intron | 50.0% |
ACAAGGGGCGATAATCCCTC+CGG | + | chr5.4:67861746-67861765 | None:intergenic | 55.0% | |
CTACTTACCCTTCTCGTGGG+TGG | + | chr5.4:67862522-67862541 | None:intergenic | 55.0% | |
TTGCCCCAACAACGCTAAGC+CGG | - | chr5.4:67861724-67861743 | MS.gene070492:CDS | 55.0% | |
! | GCTTTTCCATCCGCTTCACC+TGG | + | chr5.4:67863017-67863036 | None:intergenic | 55.0% |
CCCAACAACGCTAAGCCGGA+GGG | - | chr5.4:67861728-67861747 | MS.gene070492:CDS | 60.0% | |
CCCTCCGGCTTAGCGTTGTT+GGG | + | chr5.4:67861731-67861750 | None:intergenic | 60.0% | |
CCTCCGGCTTAGCGTTGTTG+GGG | + | chr5.4:67861730-67861749 | None:intergenic | 60.0% | |
GCTGTTCCAGGTGAAGCGGA+TGG | - | chr5.4:67863008-67863027 | MS.gene070492:intron | 60.0% | |
TCCCTCCGGCTTAGCGTTGT+TGG | + | chr5.4:67861732-67861751 | None:intergenic | 60.0% | |
CCCCAACAACGCTAAGCCGG+AGG | - | chr5.4:67861727-67861746 | MS.gene070492:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 67860508 | 67863415 | 67860508 | ID=MS.gene070492 |
chr5.4 | mRNA | 67860508 | 67863415 | 67860508 | ID=MS.gene070492.t1;Parent=MS.gene070492 |
chr5.4 | exon | 67863367 | 67863415 | 67863367 | ID=MS.gene070492.t1.exon1;Parent=MS.gene070492.t1 |
chr5.4 | CDS | 67863367 | 67863415 | 67863367 | ID=cds.MS.gene070492.t1;Parent=MS.gene070492.t1 |
chr5.4 | exon | 67862132 | 67862845 | 67862132 | ID=MS.gene070492.t1.exon2;Parent=MS.gene070492.t1 |
chr5.4 | CDS | 67862132 | 67862845 | 67862132 | ID=cds.MS.gene070492.t1;Parent=MS.gene070492.t1 |
chr5.4 | exon | 67861390 | 67861937 | 67861390 | ID=MS.gene070492.t1.exon3;Parent=MS.gene070492.t1 |
chr5.4 | CDS | 67861390 | 67861937 | 67861390 | ID=cds.MS.gene070492.t1;Parent=MS.gene070492.t1 |
chr5.4 | exon | 67860508 | 67861221 | 67860508 | ID=MS.gene070492.t1.exon4;Parent=MS.gene070492.t1 |
chr5.4 | CDS | 67860508 | 67861221 | 67860508 | ID=cds.MS.gene070492.t1;Parent=MS.gene070492.t1 |
Gene Sequence |
Protein sequence |