Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070510.t1 | XP_024640313.1 | 60.7 | 700 | 256 | 5 | 57 | 741 | 6 | 701 | 2.20E-181 | 646 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070510.t1 | G7KHB3 | 60.7 | 700 | 256 | 5 | 57 | 741 | 6 | 701 | 1.6e-181 | 646.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070510.t1 | MTR_5g085480 | 67.857 | 700 | 206 | 7 | 57 | 741 | 6 | 701 | 0.0 | 885 |
MS.gene070510.t1 | MTR_5g085830 | 62.482 | 693 | 223 | 12 | 52 | 732 | 40 | 707 | 0.0 | 805 |
MS.gene070510.t1 | MTR_5g085810 | 60.615 | 716 | 227 | 11 | 52 | 730 | 36 | 733 | 0.0 | 792 |
MS.gene070510.t1 | MTR_5g085480 | 66.114 | 543 | 168 | 5 | 213 | 741 | 1 | 541 | 0.0 | 666 |
MS.gene070510.t1 | MTR_2g033050 | 80.303 | 396 | 73 | 4 | 100 | 491 | 1 | 395 | 0.0 | 649 |
MS.gene070510.t1 | MTR_5g085500 | 59.044 | 481 | 116 | 7 | 325 | 739 | 2 | 467 | 3.35e-177 | 515 |
MS.gene070510.t1 | MTR_5g085490 | 76.897 | 290 | 53 | 3 | 23 | 309 | 14 | 292 | 2.02e-152 | 445 |
MS.gene070510.t1 | MTR_5g085440 | 48.259 | 402 | 132 | 11 | 342 | 741 | 38 | 365 | 6.35e-97 | 305 |
MS.gene070510.t1 | MTR_5g085440 | 67.273 | 165 | 43 | 1 | 19 | 183 | 6 | 159 | 4.59e-64 | 218 |
MS.gene070510.t1 | MTR_2g033045 | 70.721 | 222 | 43 | 1 | 515 | 736 | 25 | 224 | 1.40e-95 | 299 |
MS.gene070510.t1 | MTR_5g085520 | 75.758 | 198 | 45 | 2 | 107 | 301 | 1 | 198 | 2.03e-93 | 290 |
MS.gene070510.t1 | MTR_5g085530 | 78.082 | 73 | 15 | 1 | 303 | 374 | 1 | 73 | 1.27e-32 | 121 |
MS.gene070510.t1 | MTR_2g096190 | 25.462 | 487 | 310 | 11 | 240 | 707 | 41 | 493 | 3.38e-27 | 117 |
MS.gene070510.t1 | MTR_4g062100 | 26.030 | 461 | 292 | 15 | 259 | 699 | 67 | 498 | 1.97e-26 | 114 |
MS.gene070510.t1 | MTR_7g100390 | 27.133 | 457 | 290 | 10 | 259 | 699 | 46 | 475 | 5.56e-26 | 113 |
MS.gene070510.t1 | MTR_7g117620 | 28.035 | 453 | 271 | 19 | 266 | 702 | 85 | 498 | 5.93e-25 | 110 |
MS.gene070510.t1 | MTR_1g115575 | 24.736 | 473 | 302 | 14 | 259 | 715 | 128 | 562 | 3.09e-24 | 108 |
MS.gene070510.t1 | MTR_1g032100 | 27.331 | 472 | 289 | 16 | 252 | 704 | 47 | 483 | 6.09e-24 | 107 |
MS.gene070510.t1 | MTR_1g069110 | 25.694 | 432 | 256 | 14 | 310 | 705 | 30 | 432 | 2.90e-22 | 101 |
MS.gene070510.t1 | MTR_2g101310 | 24.324 | 444 | 265 | 15 | 299 | 684 | 144 | 574 | 6.73e-20 | 94.7 |
MS.gene070510.t1 | MTR_8g105260 | 24.362 | 431 | 282 | 12 | 266 | 682 | 67 | 467 | 2.48e-16 | 83.2 |
MS.gene070510.t1 | MTR_7g100430 | 22.682 | 507 | 308 | 14 | 249 | 696 | 55 | 536 | 2.80e-16 | 83.2 |
MS.gene070510.t1 | MTR_2g101320 | 22.897 | 428 | 271 | 12 | 299 | 675 | 144 | 563 | 4.71e-15 | 79.3 |
MS.gene070510.t1 | MTR_5g085560 | 42.017 | 119 | 48 | 4 | 497 | 598 | 2 | 116 | 5.38e-15 | 72.8 |
MS.gene070510.t1 | MTR_2g096760 | 28.302 | 212 | 133 | 7 | 298 | 497 | 15 | 219 | 7.78e-14 | 74.7 |
MS.gene070510.t1 | MTR_3g016210 | 25.000 | 352 | 199 | 13 | 269 | 599 | 13 | 320 | 3.09e-13 | 73.2 |
MS.gene070510.t1 | MTR_2g101310 | 24.857 | 350 | 201 | 12 | 299 | 599 | 144 | 480 | 3.28e-13 | 73.2 |
MS.gene070510.t1 | MTR_8g072510 | 27.679 | 224 | 144 | 7 | 269 | 479 | 13 | 231 | 2.18e-12 | 70.5 |
MS.gene070510.t1 | MTR_1g059930 | 27.232 | 224 | 145 | 7 | 269 | 479 | 15 | 233 | 2.92e-11 | 66.6 |
MS.gene070510.t1 | MTR_8g039620 | 25.217 | 345 | 199 | 13 | 269 | 599 | 17 | 316 | 3.34e-11 | 66.6 |
MS.gene070510.t1 | MTR_8g040930 | 34.848 | 132 | 75 | 4 | 356 | 479 | 55 | 183 | 4.05e-11 | 65.9 |
MS.gene070510.t1 | MTR_8g041240 | 34.848 | 132 | 75 | 4 | 356 | 479 | 55 | 183 | 4.05e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070510.t1 | AT4G03500 | 29.808 | 624 | 336 | 15 | 109 | 724 | 103 | 632 | 2.31e-65 | 229 |
MS.gene070510.t1 | AT4G03500 | 29.808 | 624 | 336 | 15 | 109 | 724 | 80 | 609 | 3.09e-65 | 228 |
MS.gene070510.t1 | AT4G03500 | 29.808 | 624 | 336 | 15 | 109 | 724 | 80 | 609 | 3.09e-65 | 228 |
MS.gene070510.t1 | AT4G03460 | 30.696 | 632 | 328 | 15 | 109 | 725 | 81 | 617 | 2.45e-63 | 223 |
MS.gene070510.t1 | AT4G03460 | 29.734 | 676 | 356 | 18 | 72 | 725 | 7 | 585 | 4.02e-61 | 216 |
MS.gene070510.t1 | AT1G03670 | 28.213 | 638 | 330 | 18 | 109 | 725 | 73 | 603 | 1.01e-60 | 216 |
MS.gene070510.t1 | AT4G03490 | 27.515 | 676 | 363 | 21 | 105 | 741 | 33 | 620 | 1.50e-55 | 201 |
MS.gene070510.t1 | AT4G03490 | 27.515 | 676 | 363 | 21 | 105 | 741 | 23 | 610 | 1.85e-55 | 201 |
MS.gene070510.t1 | AT4G03490 | 27.439 | 656 | 344 | 20 | 105 | 729 | 33 | 587 | 7.30e-54 | 198 |
MS.gene070510.t1 | AT4G03490 | 25.762 | 656 | 317 | 19 | 105 | 729 | 13 | 529 | 3.85e-45 | 172 |
MS.gene070510.t1 | AT4G03490 | 25.762 | 656 | 317 | 19 | 105 | 729 | 23 | 539 | 4.52e-45 | 172 |
MS.gene070510.t1 | AT4G03440 | 27.121 | 660 | 344 | 20 | 104 | 713 | 107 | 679 | 3.42e-44 | 170 |
MS.gene070510.t1 | AT4G03440 | 27.121 | 660 | 344 | 20 | 104 | 713 | 107 | 679 | 3.42e-44 | 170 |
MS.gene070510.t1 | AT4G03440 | 27.121 | 660 | 344 | 20 | 104 | 713 | 114 | 686 | 4.10e-44 | 170 |
MS.gene070510.t1 | AT4G03480 | 28.353 | 589 | 295 | 19 | 100 | 635 | 142 | 656 | 5.96e-40 | 157 |
MS.gene070510.t1 | AT4G03480 | 28.209 | 592 | 295 | 19 | 100 | 635 | 142 | 659 | 1.11e-39 | 156 |
MS.gene070510.t1 | AT4G03450 | 25.984 | 635 | 355 | 16 | 112 | 732 | 75 | 608 | 4.25e-39 | 154 |
MS.gene070510.t1 | AT4G03470 | 26.656 | 619 | 324 | 18 | 96 | 692 | 107 | 617 | 2.37e-38 | 152 |
MS.gene070510.t1 | AT4G03450 | 26.027 | 584 | 331 | 14 | 112 | 681 | 75 | 571 | 2.61e-38 | 152 |
MS.gene070510.t1 | AT4G14390 | 25.938 | 613 | 343 | 16 | 100 | 694 | 124 | 643 | 1.25e-35 | 144 |
MS.gene070510.t1 | AT4G14390 | 25.817 | 612 | 344 | 16 | 100 | 694 | 105 | 623 | 1.32e-35 | 144 |
MS.gene070510.t1 | AT4G14390 | 25.817 | 612 | 344 | 16 | 100 | 694 | 124 | 642 | 1.89e-35 | 144 |
MS.gene070510.t1 | AT4G05040 | 26.345 | 539 | 268 | 13 | 100 | 611 | 100 | 536 | 8.42e-30 | 125 |
MS.gene070510.t1 | AT4G05040 | 26.345 | 539 | 268 | 13 | 100 | 611 | 100 | 536 | 8.42e-30 | 125 |
MS.gene070510.t1 | AT4G05040 | 26.345 | 539 | 268 | 13 | 100 | 611 | 100 | 536 | 8.42e-30 | 125 |
MS.gene070510.t1 | AT4G05040 | 26.345 | 539 | 268 | 13 | 100 | 611 | 100 | 536 | 8.42e-30 | 125 |
MS.gene070510.t1 | AT4G05040 | 26.345 | 539 | 268 | 13 | 100 | 611 | 100 | 536 | 8.42e-30 | 125 |
MS.gene070510.t1 | AT4G05040 | 26.345 | 539 | 268 | 13 | 100 | 611 | 100 | 536 | 8.42e-30 | 125 |
MS.gene070510.t1 | AT4G05040 | 26.345 | 539 | 268 | 13 | 100 | 611 | 100 | 536 | 8.42e-30 | 125 |
MS.gene070510.t1 | AT5G02620 | 26.941 | 438 | 274 | 13 | 259 | 677 | 53 | 463 | 4.71e-27 | 116 |
MS.gene070510.t1 | AT5G02620 | 26.941 | 438 | 274 | 13 | 259 | 677 | 53 | 463 | 4.71e-27 | 116 |
MS.gene070510.t1 | AT5G02620 | 26.941 | 438 | 274 | 13 | 259 | 677 | 53 | 463 | 4.71e-27 | 116 |
MS.gene070510.t1 | AT3G12360 | 25.910 | 467 | 306 | 15 | 258 | 715 | 113 | 548 | 1.49e-26 | 115 |
MS.gene070510.t1 | AT3G12360 | 25.910 | 467 | 306 | 15 | 258 | 715 | 125 | 560 | 1.58e-26 | 115 |
MS.gene070510.t1 | AT5G02620 | 25.974 | 462 | 271 | 14 | 259 | 677 | 53 | 486 | 1.33e-24 | 109 |
MS.gene070510.t1 | AT5G02620 | 25.974 | 462 | 271 | 14 | 259 | 677 | 53 | 486 | 1.33e-24 | 109 |
MS.gene070510.t1 | AT2G31820 | 25.820 | 488 | 312 | 15 | 266 | 734 | 193 | 649 | 1.90e-24 | 109 |
MS.gene070510.t1 | AT4G14390 | 27.376 | 442 | 261 | 14 | 100 | 530 | 105 | 497 | 1.28e-23 | 105 |
MS.gene070510.t1 | AT3G09550 | 25.397 | 441 | 275 | 13 | 258 | 682 | 146 | 548 | 8.55e-23 | 103 |
MS.gene070510.t1 | AT3G09550 | 25.397 | 441 | 275 | 13 | 258 | 682 | 139 | 541 | 9.77e-23 | 103 |
MS.gene070510.t1 | AT3G09550 | 25.397 | 441 | 275 | 13 | 258 | 682 | 139 | 541 | 9.77e-23 | 103 |
MS.gene070510.t1 | AT5G60070 | 25.330 | 454 | 276 | 11 | 259 | 696 | 70 | 476 | 3.36e-22 | 101 |
MS.gene070510.t1 | AT5G60070 | 23.600 | 500 | 304 | 13 | 253 | 698 | 23 | 498 | 6.56e-19 | 91.3 |
MS.gene070510.t1 | AT4G14400 | 26.835 | 395 | 231 | 13 | 97 | 477 | 24 | 374 | 7.98e-21 | 97.8 |
MS.gene070510.t1 | AT4G14400 | 26.835 | 395 | 231 | 13 | 97 | 477 | 24 | 374 | 7.98e-21 | 97.8 |
MS.gene070510.t1 | AT4G14400 | 27.041 | 392 | 228 | 13 | 100 | 477 | 93 | 440 | 8.43e-21 | 97.8 |
MS.gene070510.t1 | AT1G05640 | 25.546 | 458 | 291 | 15 | 266 | 704 | 157 | 583 | 4.04e-19 | 92.4 |
MS.gene070510.t1 | AT5G54710 | 21.656 | 628 | 417 | 17 | 109 | 705 | 19 | 602 | 9.42e-19 | 91.3 |
MS.gene070510.t1 | AT1G07710 | 25.963 | 493 | 299 | 14 | 211 | 682 | 28 | 475 | 1.03e-18 | 90.9 |
MS.gene070510.t1 | AT1G07710 | 25.963 | 493 | 299 | 14 | 211 | 682 | 28 | 475 | 1.03e-18 | 90.9 |
MS.gene070510.t1 | AT5G54710 | 23.518 | 523 | 324 | 15 | 201 | 705 | 93 | 557 | 1.71e-18 | 90.5 |
MS.gene070510.t1 | AT2G01680 | 24.301 | 465 | 308 | 15 | 255 | 704 | 52 | 487 | 4.44e-18 | 88.6 |
MS.gene070510.t1 | AT1G34050 | 20.748 | 535 | 368 | 12 | 206 | 731 | 68 | 555 | 3.92e-17 | 85.9 |
Find 120 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTTACCTTGCGGTCGAAAA+TGG | 0.151246 | 5.4:+67647113 | MS.gene070510:CDS |
CGCTCTCATTTCATTATCTT+TGG | 0.211926 | 5.4:+67649068 | MS.gene070510:CDS |
TTCGGCTTATCATCATTCTT+AGG | 0.212895 | 5.4:-67647173 | None:intergenic |
GTGCTACCATCATACTCTTT+TGG | 0.232922 | 5.4:+67648980 | MS.gene070510:CDS |
GATGCATATCACTTGGTATA+TGG | 0.237161 | 5.4:+67646561 | MS.gene070510:CDS |
TGAAGTGCTAGTACTCTTCT+TGG | 0.241220 | 5.4:-67648613 | None:intergenic |
GTTCAACATTGTCTTCATTT+TGG | 0.244831 | 5.4:-67648690 | None:intergenic |
CCATATGATGCTAGATGAAT+TGG | 0.269046 | 5.4:-67647692 | None:intergenic |
ACAATTCAAAGGGACAAATT+AGG | 0.272197 | 5.4:+67647662 | MS.gene070510:CDS |
GATTCACTCTTTCTTTGCTT+TGG | 0.273093 | 5.4:-67647967 | None:intergenic |
CTTCACATTGCGTCAAAGTA+TGG | 0.276856 | 5.4:+67647800 | MS.gene070510:CDS |
AAAATTGTTATGCGGCTTCT+TGG | 0.295438 | 5.4:+67649042 | MS.gene070510:CDS |
CAAGAGCTGTTTCGTTGTTC+TGG | 0.297940 | 5.4:-67648003 | None:intergenic |
TTAAATGTGAACAAAAGTTT+TGG | 0.315107 | 5.4:-67646711 | None:intergenic |
AGAAAGAGTGAATCTTGATT+TGG | 0.321594 | 5.4:+67647976 | MS.gene070510:CDS |
AAGGATCTCAGTTACCTCTA+AGG | 0.337675 | 5.4:-67646496 | None:intergenic |
GATAAGCCTTCCGAAGAAAA+AGG | 0.345510 | 5.4:-67646429 | None:intergenic |
GGCTTCATCTTGCTTTGGTT+GGG | 0.350342 | 5.4:-67646391 | None:intergenic |
CTTCATTACGCATCGACTAT+AGG | 0.350424 | 5.4:+67647593 | MS.gene070510:CDS |
TTTACCTTGCGGTCGAAAAT+GGG | 0.350498 | 5.4:+67647114 | MS.gene070510:CDS |
GTATGATGAAAACTCAAATA+TGG | 0.357665 | 5.4:+67646884 | MS.gene070510:CDS |
AGGAGATACTCCTTTGCATT+TGG | 0.359239 | 5.4:+67647901 | MS.gene070510:CDS |
TTCATTATCTTTGGCTTTCG+TGG | 0.362625 | 5.4:+67649077 | MS.gene070510:CDS |
GATAAGGCTTCATCTTGCTT+TGG | 0.363153 | 5.4:-67646396 | None:intergenic |
GAGGAATGTAGCAAAGTCTT+TGG | 0.375367 | 5.4:-67646588 | None:intergenic |
CTTCATGATTGCTGCTACAA+CGG | 0.375756 | 5.4:-67647207 | None:intergenic |
GAGTATGATGGTAGCACTAA+TGG | 0.379466 | 5.4:-67648974 | None:intergenic |
TTTCTGTTTCTCCTCTGCTT+TGG | 0.384517 | 5.4:-67648755 | None:intergenic |
TCGGCTTATCATCATTCTTA+GGG | 0.387298 | 5.4:-67647172 | None:intergenic |
TGAATTTGAATCACTTGGTT+TGG | 0.387429 | 5.4:-67648644 | None:intergenic |
ACTAGGTGGTACACAGTTCT+AGG | 0.389064 | 5.4:-67647941 | None:intergenic |
ATATGAAATTGAACCCTTAG+AGG | 0.390512 | 5.4:+67646482 | MS.gene070510:CDS |
CATGTTATGCTAATATTAAA+CGG | 0.395462 | 5.4:+67646805 | MS.gene070510:CDS |
AGGCTTCATCTTGCTTTGGT+TGG | 0.396650 | 5.4:-67646392 | None:intergenic |
TTCGATGTTTGTCCCTTGAA+TGG | 0.398626 | 5.4:-67647562 | None:intergenic |
CCAATTCATCTAGCATCATA+TGG | 0.404047 | 5.4:+67647692 | MS.gene070510:CDS |
TTTCTTTGCTTTGGTTAACT+AGG | 0.407471 | 5.4:-67647958 | None:intergenic |
AACACTTGGAATAACTGAAT+TGG | 0.418036 | 5.4:+67649005 | MS.gene070510:CDS |
AAGGAATGTGAGTAGCTATA+AGG | 0.420352 | 5.4:+67646452 | MS.gene070510:CDS |
ATGCATATCACTTGGTATAT+GGG | 0.424154 | 5.4:+67646562 | MS.gene070510:CDS |
CCGTTATTAATGAGCTCAAT+TGG | 0.424198 | 5.4:+67649112 | MS.gene070510:CDS |
AATGTTTGCAGCTTCTTACA+TGG | 0.425057 | 5.4:+67648557 | MS.gene070510:intron |
TTTGTTTCACTTTGTTGAGA+TGG | 0.426628 | 5.4:-67648712 | None:intergenic |
TTATCTTTGGCTTTCGTGGT+TGG | 0.427692 | 5.4:+67649081 | MS.gene070510:CDS |
CAATGATTAACATCTTGATC+AGG | 0.437070 | 5.4:-67649291 | None:intergenic |
GGACGCAGTCAAACTAATCT+TGG | 0.439229 | 5.4:+67647142 | MS.gene070510:CDS |
AAGGGTTCAATTTCATATCC+AGG | 0.443417 | 5.4:-67646477 | None:intergenic |
TTATCAAATTCGCAACAGTT+TGG | 0.447270 | 5.4:-67646519 | None:intergenic |
GTAATAATTCAACACCTTCA+AGG | 0.447605 | 5.4:-67647619 | None:intergenic |
TCAAGCATTTCTGTGGGATC+AGG | 0.449653 | 5.4:-67647755 | None:intergenic |
AGCAAGATGAAGCCTTATCT+AGG | 0.453303 | 5.4:+67646400 | MS.gene070510:CDS |
TTCATGATTGCTGCTACAAC+GGG | 0.455458 | 5.4:-67647206 | None:intergenic |
TACTAGAAAAGAAGCCAACT+TGG | 0.462511 | 5.4:+67647537 | MS.gene070510:CDS |
CTGATCAAGATGTTAATCAT+TGG | 0.474271 | 5.4:+67649292 | MS.gene070510:CDS |
GCAAATGTTGCACAATTCAA+AGG | 0.478259 | 5.4:+67647651 | MS.gene070510:CDS |
TATTAATGAGCTCAATTGGT+TGG | 0.480100 | 5.4:+67649116 | MS.gene070510:CDS |
ACCTCTTGCAGCAACATGTA+AGG | 0.481999 | 5.4:-67646751 | None:intergenic |
GTTAAGACGGAGAACGTTCA+AGG | 0.482098 | 5.4:+67646924 | MS.gene070510:CDS |
CTTGAAACATTGCTTGACAT+AGG | 0.487734 | 5.4:-67648915 | None:intergenic |
TTTCTTCGGAAGGCTTATCA+AGG | 0.491934 | 5.4:+67646433 | MS.gene070510:CDS |
CAAATTCGCAACAGTTTGGA+AGG | 0.493552 | 5.4:-67646515 | None:intergenic |
TTCATCTTGCTTTGGTTGGG+CGG | 0.502836 | 5.4:-67646388 | None:intergenic |
TCCCTTGAATGGATCCAAGT+TGG | 0.503972 | 5.4:-67647551 | None:intergenic |
TGATAAATCATCTTTGAGAC+AGG | 0.507882 | 5.4:+67648051 | MS.gene070510:CDS |
AGCCAACTTGGATCCATTCA+AGG | 0.510712 | 5.4:+67647549 | MS.gene070510:CDS |
ATACTACAAAGTCAAATTCG+TGG | 0.514369 | 5.4:+67647845 | MS.gene070510:CDS |
TTATGTGACAAGAGCATTAG+TGG | 0.520589 | 5.4:+67646972 | MS.gene070510:CDS |
CCAATTGAGCTCATTAATAA+CGG | 0.525280 | 5.4:-67649112 | None:intergenic |
GAAACTCATTGTCAAAATGT+TGG | 0.529265 | 5.4:+67647045 | MS.gene070510:CDS |
CATATGATGCTAGATGAATT+GGG | 0.531667 | 5.4:-67647691 | None:intergenic |
TTTGGTGAATTTGAATCACT+TGG | 0.531776 | 5.4:-67648649 | None:intergenic |
AAAAGGCAGATTCCTAGATA+AGG | 0.532082 | 5.4:-67646412 | None:intergenic |
TCGACTATAGGTTACCTTGA+AGG | 0.532334 | 5.4:+67647605 | MS.gene070510:CDS |
CAAATGTTGCACAATTCAAA+GGG | 0.536101 | 5.4:+67647652 | MS.gene070510:CDS |
CTTTGCTTTGGTTAACTAGG+TGG | 0.538961 | 5.4:-67647955 | None:intergenic |
GCTTAGTGATGCATATCACT+TGG | 0.539510 | 5.4:+67646554 | MS.gene070510:CDS |
TGCATATCACTTGGTATATG+GGG | 0.541247 | 5.4:+67646563 | MS.gene070510:CDS |
TGGACTGCACTTAAATCTGC+TGG | 0.547758 | 5.4:+67648577 | MS.gene070510:CDS |
GCAATCATGAAGCACAATCA+AGG | 0.549271 | 5.4:+67647218 | MS.gene070510:CDS |
AGGATCTCAGTTACCTCTAA+GGG | 0.553398 | 5.4:-67646495 | None:intergenic |
CAGTGATATCCGCCAATCGT+TGG | 0.560972 | 5.4:+67646349 | MS.gene070510:CDS |
GTGAGTAGCTATAAGGAACC+TGG | 0.561645 | 5.4:+67646459 | MS.gene070510:CDS |
CTACATATTGCAGCTTGGAA+TGG | 0.566846 | 5.4:+67646651 | MS.gene070510:CDS |
GCTGTTCCAGGTGAAGCGGA+TGG | 0.571638 | 5.4:+67648880 | MS.gene070510:CDS |
TATGTGACAAGAGCATTAGT+GGG | 0.582601 | 5.4:+67646973 | MS.gene070510:CDS |
AGAAGTGTCAAGCATTTCTG+TGG | 0.585441 | 5.4:-67647762 | None:intergenic |
TGTTGCCCAAAAGAGTATGA+TGG | 0.588494 | 5.4:-67648986 | None:intergenic |
TTACTCTCAAAATTGTTATG+CGG | 0.589694 | 5.4:+67649034 | MS.gene070510:CDS |
TTGATGATGATGGAAGGAAA+AGG | 0.595577 | 5.4:-67649200 | None:intergenic |
TTACCTTGCGGTCGAAAATG+GGG | 0.603411 | 5.4:+67647115 | MS.gene070510:CDS |
CAGTGCTACATATTGCAGCT+TGG | 0.607320 | 5.4:+67646646 | MS.gene070510:CDS |
GCCTTACATGTTGCTGCAAG+AGG | 0.610873 | 5.4:+67646750 | MS.gene070510:CDS |
GGCTTGCTAGTTGATGATGA+TGG | 0.611945 | 5.4:-67649210 | None:intergenic |
ACAACGGGCGATAATCCCTT+CGG | 0.620725 | 5.4:-67647191 | None:intergenic |
ATAGTCGATGCGTAATGAAG+AGG | 0.623634 | 5.4:-67647590 | None:intergenic |
TAAGAATGATGATAAGCCGA+AGG | 0.624360 | 5.4:+67647175 | MS.gene070510:CDS |
GCCAACTTGGATCCATTCAA+GGG | 0.628602 | 5.4:+67647550 | MS.gene070510:CDS |
CTCCAACGAAAACGTAGATG+AGG | 0.629604 | 5.4:-67646321 | None:intergenic |
GATCTTGCAGCCAAATGCAA+AGG | 0.631460 | 5.4:-67647911 | None:intergenic |
TGAAATGTCAACCAAAGCAG+AGG | 0.631565 | 5.4:+67648744 | MS.gene070510:CDS |
GAAATCTGTACTTTACCTTG+CGG | 0.636916 | 5.4:+67647103 | MS.gene070510:CDS |
TTACATGTTGCTGCAAGAGG+TGG | 0.637643 | 5.4:+67646753 | MS.gene070510:CDS |
CATTGTTACTGCACTCTACG+AGG | 0.640146 | 5.4:+67648027 | MS.gene070510:CDS |
TGGTGAGAAATGTACCGCAA+TGG | 0.640447 | 5.4:-67649231 | None:intergenic |
AAGAATGATGATAAGCCGAA+GGG | 0.643420 | 5.4:+67647176 | MS.gene070510:CDS |
TGCGGTCGAAAATGGGGACA+AGG | 0.647695 | 5.4:+67647121 | MS.gene070510:CDS |
TGATGAAAACTCAAATATGG+AGG | 0.647702 | 5.4:+67646887 | MS.gene070510:CDS |
AGCATCATATGGTGGCCATG+TGG | 0.648207 | 5.4:+67647703 | MS.gene070510:CDS |
TAAGTGTTGAAACAATTGTG+AGG | 0.650525 | 5.4:-67648828 | None:intergenic |
AAAGTATGGAAAACATGAGG+TGG | 0.655770 | 5.4:+67647814 | MS.gene070510:CDS |
GAAGTGTCAAGCATTTCTGT+GGG | 0.656816 | 5.4:-67647761 | None:intergenic |
TGCTAGTTGATGATGATGGA+AGG | 0.661467 | 5.4:-67649206 | None:intergenic |
GCATATCACTTGGTATATGG+GGG | 0.666371 | 5.4:+67646564 | MS.gene070510:CDS |
ATTCAAGGGACAAACATCGA+AGG | 0.667952 | 5.4:+67647564 | MS.gene070510:CDS |
CATCAACTAGCAAGCCATTG+CGG | 0.674472 | 5.4:+67649217 | MS.gene070510:CDS |
GTCAAAGTATGGAAAACATG+AGG | 0.675637 | 5.4:+67647811 | MS.gene070510:CDS |
AGGCAACACTATGTTACATG+AGG | 0.678880 | 5.4:+67646944 | MS.gene070510:CDS |
ACTTCTTCACTACTTCCACA+TGG | 0.680029 | 5.4:-67647718 | None:intergenic |
ATTCATCTAGCATCATATGG+TGG | 0.697537 | 5.4:+67647695 | MS.gene070510:CDS |
ATGTGACAAGAGCATTAGTG+GGG | 0.704069 | 5.4:+67646974 | MS.gene070510:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTTATTTATAATTGACAA+CGG | + | chr5.4:67648316-67648335 | MS.gene070510:intron | 10.0% |
!! | ATAAATCAAAAAGATAATAA+AGG | + | chr5.4:67647881-67647900 | MS.gene070510:CDS | 10.0% |
!!! | AATGATTGATTTGATATTTA+TGG | - | chr5.4:67648375-67648394 | None:intergenic | 15.0% |
!! | AACATACTTATAAATTTGTG+AGG | - | chr5.4:67648092-67648111 | None:intergenic | 20.0% |
!! | ACATACTTATAAATTTGTGA+GGG | - | chr5.4:67648091-67648110 | None:intergenic | 20.0% |
!! | AGGTATGTAATTAAATAACT+AGG | + | chr5.4:67647238-67647257 | MS.gene070510:intron | 20.0% |
!! | ATTTAGAAATTCTTGTAACT+TGG | + | chr5.4:67648425-67648444 | MS.gene070510:intron | 20.0% |
!! | CATGTTATGCTAATATTAAA+CGG | + | chr5.4:67646805-67646824 | MS.gene070510:CDS | 20.0% |
!! | TATGTAATTAAATAACTAGG+TGG | + | chr5.4:67647241-67647260 | MS.gene070510:intron | 20.0% |
!! | TGCAATTATTAGACATTATT+GGG | + | chr5.4:67647476-67647495 | MS.gene070510:intron | 20.0% |
!! | TTGCAATTATTAGACATTAT+TGG | + | chr5.4:67647475-67647494 | MS.gene070510:intron | 20.0% |
!!! | AAAAAGGTAAGTAAACTTTT+AGG | + | chr5.4:67647329-67647348 | MS.gene070510:intron | 20.0% |
!!! | AAGTAAACTTTTAGGTAATA+TGG | + | chr5.4:67647337-67647356 | MS.gene070510:intron | 20.0% |
!!! | AATTTGCTTATAATTGACAA+TGG | - | chr5.4:67648202-67648221 | None:intergenic | 20.0% |
!!! | CTTGTTAAATTTTGTTAAGA+CGG | + | chr5.4:67646911-67646930 | MS.gene070510:CDS | 20.0% |
!!! | TCTTTATCTGATTCTATTTT+TGG | - | chr5.4:67648670-67648689 | None:intergenic | 20.0% |
!!! | TTAAATGTGAACAAAAGTTT+TGG | - | chr5.4:67646714-67646733 | None:intergenic | 20.0% |
!!! | TTCAATTTTTGTTAAATCAG+AGG | - | chr5.4:67646610-67646629 | None:intergenic | 20.0% |
! | AGTCATAATCAGAAAAACAT+TGG | - | chr5.4:67649142-67649161 | None:intergenic | 25.0% |
! | CATACTTATAAATTTGTGAG+GGG | - | chr5.4:67648090-67648109 | None:intergenic | 25.0% |
! | GTATGATGAAAACTCAAATA+TGG | + | chr5.4:67646884-67646903 | MS.gene070510:CDS | 25.0% |
! | TAAATCACATGACTGAAAAA+AGG | + | chr5.4:67647313-67647332 | MS.gene070510:intron | 25.0% |
! | TATTTATAATTGACAACGGA+AGG | + | chr5.4:67648320-67648339 | MS.gene070510:intron | 25.0% |
! | TGCTAAATCTTGATATTTAG+AGG | - | chr5.4:67648507-67648526 | None:intergenic | 25.0% |
! | TTACTCTCAAAATTGTTATG+CGG | + | chr5.4:67649034-67649053 | MS.gene070510:CDS | 25.0% |
!! | ACATGCTAATAGCTTTTTAA+CGG | - | chr5.4:67646790-67646809 | None:intergenic | 25.0% |
!! | CTTAAAGTGAGTATTTTATG+AGG | + | chr5.4:67647444-67647463 | MS.gene070510:intron | 25.0% |
!!! | TAAACTTTTAGGTAATATGG+AGG | + | chr5.4:67647340-67647359 | MS.gene070510:intron | 25.0% |
!!! | TAAGCAAATTTTGACGTTTT+AGG | + | chr5.4:67648212-67648231 | MS.gene070510:intron | 25.0% |
AACACTTGGAATAACTGAAT+TGG | + | chr5.4:67649005-67649024 | MS.gene070510:CDS | 30.0% | |
ACAATTCAAAGGGACAAATT+AGG | + | chr5.4:67647662-67647681 | MS.gene070510:CDS | 30.0% | |
AGAAAGAGTGAATCTTGATT+TGG | + | chr5.4:67647976-67647995 | MS.gene070510:CDS | 30.0% | |
ATACTACAAAGTCAAATTCG+TGG | + | chr5.4:67647845-67647864 | MS.gene070510:CDS | 30.0% | |
ATATGAAATTGAACCCTTAG+AGG | + | chr5.4:67646482-67646501 | MS.gene070510:CDS | 30.0% | |
ATGCATATCACTTGGTATAT+GGG | + | chr5.4:67646562-67646581 | MS.gene070510:CDS | 30.0% | |
CAAATGTTGCACAATTCAAA+GGG | + | chr5.4:67647652-67647671 | MS.gene070510:CDS | 30.0% | |
CAATGATTAACATCTTGATC+AGG | - | chr5.4:67649294-67649313 | None:intergenic | 30.0% | |
CATATGATGCTAGATGAATT+GGG | - | chr5.4:67647694-67647713 | None:intergenic | 30.0% | |
CCAATTGAGCTCATTAATAA+CGG | - | chr5.4:67649115-67649134 | None:intergenic | 30.0% | |
CTGATCAAGATGTTAATCAT+TGG | + | chr5.4:67649292-67649311 | MS.gene070510:CDS | 30.0% | |
CTGCAAACATTATTACATCT+GGG | - | chr5.4:67648548-67648567 | None:intergenic | 30.0% | |
GAAACTCATTGTCAAAATGT+TGG | + | chr5.4:67647045-67647064 | MS.gene070510:CDS | 30.0% | |
GGAGTATAATATATGCAAAG+CGG | + | chr5.4:67648341-67648360 | MS.gene070510:intron | 30.0% | |
GTAATAATTCAACACCTTCA+AGG | - | chr5.4:67647622-67647641 | None:intergenic | 30.0% | |
GTGATGCCAAAAAAAGATAA+GGG | - | chr5.4:67649257-67649276 | None:intergenic | 30.0% | |
TAAACGGCATGATGTAAAAA+TGG | + | chr5.4:67646821-67646840 | MS.gene070510:CDS | 30.0% | |
TATTAATGAGCTCAATTGGT+TGG | + | chr5.4:67649116-67649135 | MS.gene070510:CDS | 30.0% | |
TGAATTTGAATCACTTGGTT+TGG | - | chr5.4:67648647-67648666 | None:intergenic | 30.0% | |
TGATGAAAACTCAAATATGG+AGG | + | chr5.4:67646887-67646906 | MS.gene070510:CDS | 30.0% | |
TTATCAAATTCGCAACAGTT+TGG | - | chr5.4:67646522-67646541 | None:intergenic | 30.0% | |
TTTCTTTGCTTTGGTTAACT+AGG | - | chr5.4:67647961-67647980 | None:intergenic | 30.0% | |
TTTGGTGAATTTGAATCACT+TGG | - | chr5.4:67648652-67648671 | None:intergenic | 30.0% | |
TTTGTTTCACTTTGTTGAGA+TGG | - | chr5.4:67648715-67648734 | None:intergenic | 30.0% | |
! | AATGGAATGAGTATTTTCGA+AGG | - | chr5.4:67648184-67648203 | None:intergenic | 30.0% |
! | AGTTTTCATCATACTCTTCT+GGG | - | chr5.4:67646878-67646897 | None:intergenic | 30.0% |
! | ATGGAATGAGTATTTTCGAA+GGG | - | chr5.4:67648183-67648202 | None:intergenic | 30.0% |
! | CTAATAGCTTTTTAACGGTT+TGG | - | chr5.4:67646785-67646804 | None:intergenic | 30.0% |
! | GTAGCACTGTATTTTTCATA+GGG | - | chr5.4:67646635-67646654 | None:intergenic | 30.0% |
! | GTTCAACATTGTCTTCATTT+TGG | - | chr5.4:67648693-67648712 | None:intergenic | 30.0% |
! | TAGCACTGTATTTTTCATAG+GGG | - | chr5.4:67646634-67646653 | None:intergenic | 30.0% |
! | TATGACTGTGATTTTTGTTG+CGG | + | chr5.4:67649155-67649174 | MS.gene070510:CDS | 30.0% |
! | TGTAGCACTGTATTTTTCAT+AGG | - | chr5.4:67646636-67646655 | None:intergenic | 30.0% |
!! | AATTTTAGAGACATAGCTTG+TGG | + | chr5.4:67648481-67648500 | MS.gene070510:intron | 30.0% |
!! | TAAGTGTTGAAACAATTGTG+AGG | - | chr5.4:67648831-67648850 | None:intergenic | 30.0% |
!! | TGATAAATCATCTTTGAGAC+AGG | + | chr5.4:67648051-67648070 | MS.gene070510:CDS | 30.0% |
!!! | CTAGGTGGTAACATTTTTTT+CGG | + | chr5.4:67647256-67647275 | MS.gene070510:intron | 30.0% |
AAAAGGCAGATTCCTAGATA+AGG | - | chr5.4:67646415-67646434 | None:intergenic | 35.0% | |
AAAATTGTTATGCGGCTTCT+TGG | + | chr5.4:67649042-67649061 | MS.gene070510:CDS | 35.0% | |
AAAGTATGGAAAACATGAGG+TGG | + | chr5.4:67647814-67647833 | MS.gene070510:CDS | 35.0% | |
AAGAATGATGATAAGCCGAA+GGG | + | chr5.4:67647176-67647195 | MS.gene070510:CDS | 35.0% | |
AAGGAATGTGAGTAGCTATA+AGG | + | chr5.4:67646452-67646471 | MS.gene070510:CDS | 35.0% | |
AAGGGTTCAATTTCATATCC+AGG | - | chr5.4:67646480-67646499 | None:intergenic | 35.0% | |
AATGTTTGCAGCTTCTTACA+TGG | + | chr5.4:67648557-67648576 | MS.gene070510:intron | 35.0% | |
ATGCCAAAAAAAGATAAGGG+TGG | - | chr5.4:67649254-67649273 | None:intergenic | 35.0% | |
ATTCATCTAGCATCATATGG+TGG | + | chr5.4:67647695-67647714 | MS.gene070510:CDS | 35.0% | |
CAATCGTTGGAAGAAAAAAG+TGG | + | chr5.4:67646362-67646381 | MS.gene070510:CDS | 35.0% | |
CCAATTCATCTAGCATCATA+TGG | + | chr5.4:67647692-67647711 | MS.gene070510:CDS | 35.0% | |
CCATATGATGCTAGATGAAT+TGG | - | chr5.4:67647695-67647714 | None:intergenic | 35.0% | |
CCGTTATTAATGAGCTCAAT+TGG | + | chr5.4:67649112-67649131 | MS.gene070510:CDS | 35.0% | |
CGCTCTCATTTCATTATCTT+TGG | + | chr5.4:67649068-67649087 | MS.gene070510:CDS | 35.0% | |
CGTGATGCCAAAAAAAGATA+AGG | - | chr5.4:67649258-67649277 | None:intergenic | 35.0% | |
CTTGAAACATTGCTTGACAT+AGG | - | chr5.4:67648918-67648937 | None:intergenic | 35.0% | |
GAAATCTGTACTTTACCTTG+CGG | + | chr5.4:67647103-67647122 | MS.gene070510:CDS | 35.0% | |
GATGCATATCACTTGGTATA+TGG | + | chr5.4:67646561-67646580 | MS.gene070510:CDS | 35.0% | |
GATTCACTCTTTCTTTGCTT+TGG | - | chr5.4:67647970-67647989 | None:intergenic | 35.0% | |
GCAAATGTTGCACAATTCAA+AGG | + | chr5.4:67647651-67647670 | MS.gene070510:CDS | 35.0% | |
GCTGCAAACATTATTACATC+TGG | - | chr5.4:67648549-67648568 | None:intergenic | 35.0% | |
GTCAAAGTATGGAAAACATG+AGG | + | chr5.4:67647811-67647830 | MS.gene070510:CDS | 35.0% | |
TAAGAATGATGATAAGCCGA+AGG | + | chr5.4:67647175-67647194 | MS.gene070510:CDS | 35.0% | |
TACTAGAAAAGAAGCCAACT+TGG | + | chr5.4:67647537-67647556 | MS.gene070510:CDS | 35.0% | |
TCGGCTTATCATCATTCTTA+GGG | - | chr5.4:67647175-67647194 | None:intergenic | 35.0% | |
TGCATATCACTTGGTATATG+GGG | + | chr5.4:67646563-67646582 | MS.gene070510:CDS | 35.0% | |
TTCGGCTTATCATCATTCTT+AGG | - | chr5.4:67647176-67647195 | None:intergenic | 35.0% | |
! | GAGTTTTCATCATACTCTTC+TGG | - | chr5.4:67646879-67646898 | None:intergenic | 35.0% |
! | TAGGAATCTGCCTTTTTCTT+CGG | + | chr5.4:67646419-67646438 | MS.gene070510:CDS | 35.0% |
! | TGCTACCATCATACTCTTTT+GGG | + | chr5.4:67648981-67649000 | MS.gene070510:CDS | 35.0% |
!! | AGTTGGCTTCTTTTCTAGTA+TGG | - | chr5.4:67647537-67647556 | None:intergenic | 35.0% |
!! | TATGTGACAAGAGCATTAGT+GGG | + | chr5.4:67646973-67646992 | MS.gene070510:CDS | 35.0% |
!! | TTATGTGACAAGAGCATTAG+TGG | + | chr5.4:67646972-67646991 | MS.gene070510:CDS | 35.0% |
!! | TTCATTATCTTTGGCTTTCG+TGG | + | chr5.4:67649077-67649096 | MS.gene070510:CDS | 35.0% |
!! | TTGATGATGATGGAAGGAAA+AGG | - | chr5.4:67649203-67649222 | None:intergenic | 35.0% |
!!! | AGTATGGTTTTGAGCATTTC+TGG | - | chr5.4:67647521-67647540 | None:intergenic | 35.0% |
!!! | CACTTTTTTCTTCCAACGAT+TGG | - | chr5.4:67646364-67646383 | None:intergenic | 35.0% |
!!! | TCACCACCCTTATCTTTTTT+TGG | + | chr5.4:67649248-67649267 | MS.gene070510:CDS | 35.0% |
!!! | TGGTAACATTTTTTTCGGCA+GGG | + | chr5.4:67647261-67647280 | MS.gene070510:intron | 35.0% |
!!! | TTTTTTCTTCCAACGATTGG+CGG | - | chr5.4:67646361-67646380 | None:intergenic | 35.0% |
AAGGATCTCAGTTACCTCTA+AGG | - | chr5.4:67646499-67646518 | None:intergenic | 40.0% | |
ACTTCTTCACTACTTCCACA+TGG | - | chr5.4:67647721-67647740 | None:intergenic | 40.0% | |
AGGAGATACTCCTTTGCATT+TGG | + | chr5.4:67647901-67647920 | MS.gene070510:CDS | 40.0% | |
AGGATCTCAGTTACCTCTAA+GGG | - | chr5.4:67646498-67646517 | None:intergenic | 40.0% | |
AGGCAACACTATGTTACATG+AGG | + | chr5.4:67646944-67646963 | MS.gene070510:CDS | 40.0% | |
ATAGTCGATGCGTAATGAAG+AGG | - | chr5.4:67647593-67647612 | None:intergenic | 40.0% | |
ATTCAAGGGACAAACATCGA+AGG | + | chr5.4:67647564-67647583 | MS.gene070510:CDS | 40.0% | |
CAAATTCGCAACAGTTTGGA+AGG | - | chr5.4:67646518-67646537 | None:intergenic | 40.0% | |
CTACATATTGCAGCTTGGAA+TGG | + | chr5.4:67646651-67646670 | MS.gene070510:CDS | 40.0% | |
CTTCACATTGCGTCAAAGTA+TGG | + | chr5.4:67647800-67647819 | MS.gene070510:CDS | 40.0% | |
CTTCATGATTGCTGCTACAA+CGG | - | chr5.4:67647210-67647229 | None:intergenic | 40.0% | |
CTTTGCTTTGGTTAACTAGG+TGG | - | chr5.4:67647958-67647977 | None:intergenic | 40.0% | |
GAGGAATGTAGCAAAGTCTT+TGG | - | chr5.4:67646591-67646610 | None:intergenic | 40.0% | |
GAGTATGATGGTAGCACTAA+TGG | - | chr5.4:67648977-67648996 | None:intergenic | 40.0% | |
GATAAGCCTTCCGAAGAAAA+AGG | - | chr5.4:67646432-67646451 | None:intergenic | 40.0% | |
GATAAGGCTTCATCTTGCTT+TGG | - | chr5.4:67646399-67646418 | None:intergenic | 40.0% | |
GCAATCATGAAGCACAATCA+AGG | + | chr5.4:67647218-67647237 | MS.gene070510:CDS | 40.0% | |
GCATATCACTTGGTATATGG+GGG | + | chr5.4:67646564-67646583 | MS.gene070510:CDS | 40.0% | |
GCTTAGTGATGCATATCACT+TGG | + | chr5.4:67646554-67646573 | MS.gene070510:CDS | 40.0% | |
GGCATGATGTAAAAATGGCA+TGG | + | chr5.4:67646826-67646845 | MS.gene070510:CDS | 40.0% | |
TCGACTATAGGTTACCTTGA+AGG | + | chr5.4:67647605-67647624 | MS.gene070510:CDS | 40.0% | |
TGAAATGTCAACCAAAGCAG+AGG | + | chr5.4:67648744-67648763 | MS.gene070510:CDS | 40.0% | |
TTCATGATTGCTGCTACAAC+GGG | - | chr5.4:67647209-67647228 | None:intergenic | 40.0% | |
TTCGATGTTTGTCCCTTGAA+TGG | - | chr5.4:67647565-67647584 | None:intergenic | 40.0% | |
TTTACCTTGCGGTCGAAAAT+GGG | + | chr5.4:67647114-67647133 | MS.gene070510:CDS | 40.0% | |
TTTCTTCGGAAGGCTTATCA+AGG | + | chr5.4:67646433-67646452 | MS.gene070510:CDS | 40.0% | |
! | AATCTGCCTTTTTCTTCGGA+AGG | + | chr5.4:67646423-67646442 | MS.gene070510:CDS | 40.0% |
! | AGCAAGATGAAGCCTTATCT+AGG | + | chr5.4:67646400-67646419 | MS.gene070510:CDS | 40.0% |
! | ATACTCTTTTGGGCAACACT+TGG | + | chr5.4:67648991-67649010 | MS.gene070510:CDS | 40.0% |
! | GAAGTGTCAAGCATTTCTGT+GGG | - | chr5.4:67647764-67647783 | None:intergenic | 40.0% |
! | GTGCTACCATCATACTCTTT+TGG | + | chr5.4:67648980-67648999 | MS.gene070510:CDS | 40.0% |
! | TGAAGTGCTAGTACTCTTCT+TGG | - | chr5.4:67648616-67648635 | None:intergenic | 40.0% |
! | TGTTGCCCAAAAGAGTATGA+TGG | - | chr5.4:67648989-67649008 | None:intergenic | 40.0% |
! | TTTCTGTTTCTCCTCTGCTT+TGG | - | chr5.4:67648758-67648777 | None:intergenic | 40.0% |
!! | AGAAGTGTCAAGCATTTCTG+TGG | - | chr5.4:67647765-67647784 | None:intergenic | 40.0% |
!! | ATGTGACAAGAGCATTAGTG+GGG | + | chr5.4:67646974-67646993 | MS.gene070510:CDS | 40.0% |
!! | CTTCATTACGCATCGACTAT+AGG | + | chr5.4:67647593-67647612 | MS.gene070510:CDS | 40.0% |
!! | TGCTAGTTGATGATGATGGA+AGG | - | chr5.4:67649209-67649228 | None:intergenic | 40.0% |
!! | TTATCTTTGGCTTTCGTGGT+TGG | + | chr5.4:67649081-67649100 | MS.gene070510:CDS | 40.0% |
!!! | GTGGTAACATTTTTTTCGGC+AGG | + | chr5.4:67647260-67647279 | MS.gene070510:intron | 40.0% |
ACCTCTTGCAGCAACATGTA+AGG | - | chr5.4:67646754-67646773 | None:intergenic | 45.0% | |
ACTAGGTGGTACACAGTTCT+AGG | - | chr5.4:67647944-67647963 | None:intergenic | 45.0% | |
AGCCAACTTGGATCCATTCA+AGG | + | chr5.4:67647549-67647568 | MS.gene070510:CDS | 45.0% | |
AGGCTTCATCTTGCTTTGGT+TGG | - | chr5.4:67646395-67646414 | None:intergenic | 45.0% | |
CAGTGCTACATATTGCAGCT+TGG | + | chr5.4:67646646-67646665 | MS.gene070510:CDS | 45.0% | |
CATCAACTAGCAAGCCATTG+CGG | + | chr5.4:67649217-67649236 | MS.gene070510:CDS | 45.0% | |
CATTGTTACTGCACTCTACG+AGG | + | chr5.4:67648027-67648046 | MS.gene070510:CDS | 45.0% | |
CTCCAACGAAAACGTAGATG+AGG | - | chr5.4:67646324-67646343 | None:intergenic | 45.0% | |
CTTTACCTTGCGGTCGAAAA+TGG | + | chr5.4:67647113-67647132 | MS.gene070510:CDS | 45.0% | |
GATCTTGCAGCCAAATGCAA+AGG | - | chr5.4:67647914-67647933 | None:intergenic | 45.0% | |
GCCAACTTGGATCCATTCAA+GGG | + | chr5.4:67647550-67647569 | MS.gene070510:CDS | 45.0% | |
GGACGCAGTCAAACTAATCT+TGG | + | chr5.4:67647142-67647161 | MS.gene070510:CDS | 45.0% | |
GGCTTCATCTTGCTTTGGTT+GGG | - | chr5.4:67646394-67646413 | None:intergenic | 45.0% | |
GTGAGTAGCTATAAGGAACC+TGG | + | chr5.4:67646459-67646478 | MS.gene070510:CDS | 45.0% | |
GTTAAGACGGAGAACGTTCA+AGG | + | chr5.4:67646924-67646943 | MS.gene070510:CDS | 45.0% | |
TCAAGCATTTCTGTGGGATC+AGG | - | chr5.4:67647758-67647777 | None:intergenic | 45.0% | |
TCCCTTGAATGGATCCAAGT+TGG | - | chr5.4:67647554-67647573 | None:intergenic | 45.0% | |
TGGACTGCACTTAAATCTGC+TGG | + | chr5.4:67648577-67648596 | MS.gene070510:CDS | 45.0% | |
TGGTGAGAAATGTACCGCAA+TGG | - | chr5.4:67649234-67649253 | None:intergenic | 45.0% | |
TTACATGTTGCTGCAAGAGG+TGG | + | chr5.4:67646753-67646772 | MS.gene070510:CDS | 45.0% | |
TTACCTTGCGGTCGAAAATG+GGG | + | chr5.4:67647115-67647134 | MS.gene070510:CDS | 45.0% | |
TTCATCTTGCTTTGGTTGGG+CGG | - | chr5.4:67646391-67646410 | None:intergenic | 45.0% | |
! | CAAGAGCTGTTTCGTTGTTC+TGG | - | chr5.4:67648006-67648025 | None:intergenic | 45.0% |
! | CTCATCTACGTTTTCGTTGG+AGG | + | chr5.4:67646322-67646341 | MS.gene070510:CDS | 45.0% |
! | TGCCTCATCTACGTTTTCGT+TGG | + | chr5.4:67646319-67646338 | MS.gene070510:CDS | 45.0% |
!! | GGCTTGCTAGTTGATGATGA+TGG | - | chr5.4:67649213-67649232 | None:intergenic | 45.0% |
!!! | TTTTGCTGTTCCAGGTGAAG+CGG | + | chr5.4:67648876-67648895 | MS.gene070510:CDS | 45.0% |
!!! | TTTTTTTCGGCAGGGAAGCT+AGG | + | chr5.4:67647269-67647288 | MS.gene070510:intron | 45.0% |
!! | AATGTATATAATATATATTA+TGG | - | chr5.4:67648269-67648288 | None:intergenic | 5.0% |
!! | TTTAAATCAAATTAAAATTT+AGG | - | chr5.4:67647375-67647394 | None:intergenic | 5.0% |
ACAACGGGCGATAATCCCTT+CGG | - | chr5.4:67647194-67647213 | None:intergenic | 50.0% | |
AGCATCATATGGTGGCCATG+TGG | + | chr5.4:67647703-67647722 | MS.gene070510:CDS | 50.0% | |
CAGTGATATCCGCCAATCGT+TGG | + | chr5.4:67646349-67646368 | MS.gene070510:CDS | 50.0% | |
GCCTTACATGTTGCTGCAAG+AGG | + | chr5.4:67646750-67646769 | MS.gene070510:CDS | 50.0% | |
!!! | GCAGCATGTTTTGCTGTTCC+AGG | + | chr5.4:67648868-67648887 | MS.gene070510:CDS | 50.0% |
TGCGGTCGAAAATGGGGACA+AGG | + | chr5.4:67647121-67647140 | MS.gene070510:CDS | 55.0% | |
! | GCTTTTCCATCCGCTTCACC+TGG | - | chr5.4:67648889-67648908 | None:intergenic | 55.0% |
! | TGTCCCCATTTTCGACCGCA+AGG | - | chr5.4:67647121-67647140 | None:intergenic | 55.0% |
GCTGTTCCAGGTGAAGCGGA+TGG | + | chr5.4:67648880-67648899 | MS.gene070510:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 67646318 | 67649320 | 67646318 | ID=MS.gene070510 |
chr5.4 | mRNA | 67646318 | 67649320 | 67646318 | ID=MS.gene070510.t1;Parent=MS.gene070510 |
chr5.4 | exon | 67646318 | 67647239 | 67646318 | ID=MS.gene070510.t1.exon1;Parent=MS.gene070510.t1 |
chr5.4 | CDS | 67646318 | 67647239 | 67646318 | ID=cds.MS.gene070510.t1;Parent=MS.gene070510.t1 |
chr5.4 | exon | 67647522 | 67648072 | 67647522 | ID=MS.gene070510.t1.exon2;Parent=MS.gene070510.t1 |
chr5.4 | CDS | 67647522 | 67648072 | 67647522 | ID=cds.MS.gene070510.t1;Parent=MS.gene070510.t1 |
chr5.4 | exon | 67648568 | 67649320 | 67648568 | ID=MS.gene070510.t1.exon3;Parent=MS.gene070510.t1 |
chr5.4 | CDS | 67648568 | 67649320 | 67648568 | ID=cds.MS.gene070510.t1;Parent=MS.gene070510.t1 |
Gene Sequence |
Protein sequence |