Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013563.t1 | XP_013461436.1 | 95.2 | 705 | 31 | 1 | 1 | 705 | 1 | 702 | 0.00E+00 | 1238.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013563.t1 | Q9XSC3 | 29.7 | 454 | 266 | 17 | 225 | 664 | 483 | 897 | 1.2e-33 | 146.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013563.t1 | A0A072V1A7 | 95.2 | 705 | 31 | 1 | 1 | 705 | 1 | 702 | 0.0e+00 | 1238.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene070492 | MS.gene013563 | PPI |
| MS.gene003811 | MS.gene013563 | PPI |
| MS.gene81622 | MS.gene013563 | PPI |
| MS.gene016743 | MS.gene013563 | PPI |
| MS.gene057884 | MS.gene013563 | PPI |
| MS.gene013563 | MS.gene40671 | PPI |
| MS.gene057883 | MS.gene013563 | PPI |
| MS.gene016742 | MS.gene013563 | PPI |
| MS.gene070510 | MS.gene013563 | PPI |
| MS.gene016758 | MS.gene013563 | PPI |
| MS.gene013563 | MS.gene070511 | PPI |
| MS.gene81617 | MS.gene013563 | PPI |
| MS.gene013563 | MS.gene45734 | PPI |
| MS.gene37911 | MS.gene013563 | PPI |
| MS.gene070509 | MS.gene013563 | PPI |
| MS.gene81620 | MS.gene013563 | PPI |
| MS.gene013563 | MS.gene056653 | PPI |
| MS.gene070505 | MS.gene013563 | PPI |
| MS.gene057886 | MS.gene013563 | PPI |
| MS.gene81615 | MS.gene013563 | PPI |
| MS.gene070503 | MS.gene013563 | PPI |
| MS.gene013563 | MS.gene67840 | PPI |
| MS.gene070507 | MS.gene013563 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013563.t1 | MTR_3g491920 | 95.603 | 705 | 28 | 1 | 1 | 705 | 1 | 702 | 0.0 | 1360 |
| MS.gene013563.t1 | MTR_1g007740 | 61.570 | 726 | 237 | 15 | 1 | 703 | 1 | 707 | 0.0 | 845 |
| MS.gene013563.t1 | MTR_8g100005 | 42.916 | 734 | 352 | 15 | 11 | 705 | 9 | 714 | 0.0 | 543 |
| MS.gene013563.t1 | MTR_8g092890 | 38.095 | 672 | 327 | 16 | 46 | 703 | 47 | 643 | 5.88e-127 | 391 |
| MS.gene013563.t1 | MTR_2g079740 | 42.468 | 551 | 251 | 13 | 198 | 705 | 331 | 858 | 1.61e-124 | 391 |
| MS.gene013563.t1 | MTR_3g095780 | 43.685 | 483 | 244 | 7 | 225 | 703 | 168 | 626 | 1.05e-115 | 361 |
| MS.gene013563.t1 | MTR_8g100005 | 40.845 | 497 | 239 | 10 | 11 | 470 | 9 | 487 | 4.70e-110 | 342 |
| MS.gene013563.t1 | MTR_7g060420 | 46.565 | 393 | 193 | 6 | 206 | 588 | 379 | 764 | 5.62e-92 | 309 |
| MS.gene013563.t1 | MTR_4g119620 | 29.075 | 227 | 145 | 9 | 343 | 562 | 66 | 283 | 2.08e-19 | 90.5 |
| MS.gene013563.t1 | MTR_4g119620 | 27.350 | 234 | 140 | 9 | 243 | 464 | 19 | 234 | 5.10e-13 | 71.2 |
| MS.gene013563.t1 | MTR_1g072140 | 25.833 | 240 | 158 | 8 | 330 | 562 | 48 | 274 | 1.67e-18 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013563.t1 | AT5G24320 | 46.879 | 721 | 319 | 16 | 11 | 705 | 12 | 694 | 0.0 | 594 |
| MS.gene013563.t1 | AT5G24320 | 46.897 | 725 | 317 | 17 | 11 | 705 | 12 | 698 | 0.0 | 594 |
| MS.gene013563.t1 | AT5G53500 | 47.850 | 721 | 289 | 13 | 1 | 703 | 1 | 652 | 0.0 | 585 |
| MS.gene013563.t1 | AT5G53500 | 47.850 | 721 | 289 | 13 | 1 | 703 | 1 | 652 | 0.0 | 585 |
| MS.gene013563.t1 | AT5G42010 | 48.496 | 532 | 240 | 13 | 191 | 705 | 195 | 709 | 6.71e-163 | 486 |
| MS.gene013563.t1 | AT1G64610 | 49.240 | 526 | 221 | 12 | 189 | 705 | 159 | 647 | 4.64e-158 | 471 |
| MS.gene013563.t1 | AT1G64610 | 49.240 | 526 | 221 | 12 | 189 | 705 | 159 | 647 | 4.64e-158 | 471 |
| MS.gene013563.t1 | AT5G42010 | 54.118 | 340 | 151 | 4 | 191 | 525 | 195 | 534 | 4.68e-125 | 384 |
| MS.gene013563.t1 | AT5G54200 | 38.799 | 683 | 336 | 21 | 77 | 703 | 167 | 823 | 9.61e-123 | 385 |
| MS.gene013563.t1 | AT3G15470 | 42.495 | 513 | 249 | 12 | 224 | 705 | 386 | 883 | 1.78e-118 | 376 |
| MS.gene013563.t1 | AT1G48870 | 40.816 | 490 | 225 | 11 | 216 | 702 | 163 | 590 | 3.99e-104 | 330 |
| MS.gene013563.t1 | AT1G48870 | 40.816 | 490 | 225 | 11 | 216 | 702 | 163 | 590 | 3.99e-104 | 330 |
| MS.gene013563.t1 | AT1G48870 | 40.816 | 490 | 225 | 11 | 216 | 702 | 163 | 590 | 3.99e-104 | 330 |
| MS.gene013563.t1 | AT5G02430 | 39.884 | 519 | 265 | 13 | 224 | 702 | 384 | 895 | 2.03e-95 | 315 |
| MS.gene013563.t1 | AT2G37670 | 40.038 | 522 | 261 | 13 | 226 | 702 | 379 | 893 | 1.20e-92 | 308 |
| MS.gene013563.t1 | AT2G37670 | 40.038 | 522 | 261 | 13 | 226 | 702 | 380 | 894 | 1.38e-92 | 308 |
| MS.gene013563.t1 | AT3G49660 | 23.385 | 325 | 176 | 12 | 245 | 562 | 18 | 276 | 7.01e-18 | 85.9 |
| MS.gene013563.t1 | AT4G02730 | 29.224 | 219 | 138 | 10 | 348 | 558 | 78 | 287 | 5.23e-17 | 83.6 |
| MS.gene013563.t1 | AT2G16405 | 25.214 | 234 | 159 | 4 | 343 | 560 | 202 | 435 | 2.28e-14 | 76.6 |
| MS.gene013563.t1 | AT5G67320 | 24.691 | 243 | 142 | 9 | 243 | 449 | 357 | 594 | 1.53e-11 | 68.2 |
Find 170 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATTGACACCATTGTTTA+TGG | 0.074372 | 3.4:-84019402 | MS.gene013563:CDS |
| GATTCCCAACTATGCTTAAT+TGG | 0.172014 | 3.4:-84018307 | MS.gene013563:CDS |
| CAGAGGGATAACTGGCTTTC+AGG | 0.188767 | 3.4:-84018266 | MS.gene013563:intron |
| ATGCTTGAGGGGTCAATTTC+AGG | 0.194762 | 3.4:+84019449 | None:intergenic |
| AAGAGGATGTTGTGTCTATT+AGG | 0.227175 | 3.4:-84020276 | MS.gene013563:CDS |
| GAGGAGAAGCTTCCTGTTTC+GGG | 0.230139 | 3.4:-84017561 | MS.gene013563:CDS |
| CGAGGAGAAGCTTCCTGTTT+CGG | 0.236200 | 3.4:-84017562 | MS.gene013563:CDS |
| GTACAGGTAGCCCGTAATTT+TGG | 0.245270 | 3.4:+84017400 | None:intergenic |
| GCCATCTCAAGATGGAAATT+TGG | 0.253348 | 3.4:-84019942 | MS.gene013563:CDS |
| ACATGTAACCATAACTTTCT+TGG | 0.275795 | 3.4:+84018130 | None:intergenic |
| TGGTTACTAGAACGGTAAAT+AGG | 0.280748 | 3.4:-84019772 | MS.gene013563:CDS |
| CCTAACTTTCTTAGATTTCA+TGG | 0.283800 | 3.4:+84017791 | None:intergenic |
| GAGAAAGAAGCAGGTGGGTT+GGG | 0.287380 | 3.4:+84017639 | None:intergenic |
| TCCAACAACCGGAAGATCTT+AGG | 0.295299 | 3.4:+84019311 | None:intergenic |
| GATGCGCACCTTTCCGTCTA+TGG | 0.305937 | 3.4:+84018869 | None:intergenic |
| GTGAGTTCTTCGGAGGAATT+TGG | 0.313989 | 3.4:-84019986 | MS.gene013563:CDS |
| CTACGCTCTCTCACACTCTT+TGG | 0.324124 | 3.4:+84020169 | None:intergenic |
| GATGAAGATTATTTCATTAG+TGG | 0.325769 | 3.4:-84018894 | MS.gene013563:CDS |
| GGGATTGTTGGATCTTTAGA+AGG | 0.327630 | 3.4:-84018669 | MS.gene013563:CDS |
| AATTGTAGTTGAAAATTCAT+TGG | 0.330145 | 3.4:-84020107 | MS.gene013563:CDS |
| GTGGTGAAGATGGGGTTGTT+CGG | 0.332946 | 3.4:-84019517 | MS.gene013563:CDS |
| GACACCATTGTTTATGGATA+AGG | 0.339226 | 3.4:-84019396 | MS.gene013563:CDS |
| CTTCCTGGCAGAGGGATAAC+TGG | 0.340161 | 3.4:-84018274 | MS.gene013563:CDS |
| TGGTGAAGATGGGGTTGTTC+GGG | 0.350996 | 3.4:-84019516 | MS.gene013563:CDS |
| TTCGGAGGAATTTGGTTTAG+TGG | 0.361491 | 3.4:-84019978 | MS.gene013563:CDS |
| AGGACTCTAATGTATATCTA+TGG | 0.364797 | 3.4:-84017842 | MS.gene013563:CDS |
| TAGTCCTGATGGGCAGTATC+TGG | 0.368035 | 3.4:-84019546 | MS.gene013563:CDS |
| GAGGATTGTGTAAATGTCTC+TGG | 0.370035 | 3.4:-84019851 | MS.gene013563:CDS |
| TGGGCATAGAAGTGAAGTTT+TGG | 0.376344 | 3.4:-84019267 | MS.gene013563:CDS |
| TAGACGGAAAGGTGCGCATC+TGG | 0.381026 | 3.4:-84018866 | MS.gene013563:CDS |
| CCGATTCTCAGGTTGTTGAT+TGG | 0.381470 | 3.4:-84018836 | MS.gene013563:CDS |
| GCCTAAGATCTTCCGGTTGT+TGG | 0.381485 | 3.4:-84019312 | MS.gene013563:CDS |
| CCATGAAATCTAAGAAAGTT+AGG | 0.382192 | 3.4:-84017791 | MS.gene013563:CDS |
| GAAGGGAGCTATGCAGTCTC+AGG | 0.387775 | 3.4:-84019686 | MS.gene013563:CDS |
| ATGAAATAATCTTCATCAAC+AGG | 0.393624 | 3.4:+84018900 | None:intergenic |
| GTTGATAATGATAGAGAAGA+AGG | 0.394764 | 3.4:-84019704 | MS.gene013563:CDS |
| ATTGATAGATAAAGAGTTTG+AGG | 0.395814 | 3.4:-84019810 | MS.gene013563:CDS |
| TTGCTCTAGTGTGAGTTCTT+CGG | 0.402105 | 3.4:-84019996 | MS.gene013563:CDS |
| AGAAAGAAGCAGGTGGGTTG+GGG | 0.408797 | 3.4:+84017640 | None:intergenic |
| TCAAGATTCCAAGAAAGTTA+TGG | 0.411964 | 3.4:-84018138 | MS.gene013563:CDS |
| CTGGCTACAGGTGGTGAAGA+TGG | 0.415140 | 3.4:-84019527 | MS.gene013563:CDS |
| TTGATTATGAAGTGTGGATT+CGG | 0.416684 | 3.4:-84020195 | MS.gene013563:CDS |
| TTGGTCTTGGAGCCCGAAAC+AGG | 0.417453 | 3.4:+84017549 | None:intergenic |
| AAGTCACACTTCATTTCAAA+CGG | 0.422322 | 3.4:+84017377 | None:intergenic |
| GGTTACTAGAACGGTAAATA+GGG | 0.425943 | 3.4:-84019771 | MS.gene013563:CDS |
| TTCCAAAGGGATCTGCAACC+TGG | 0.426271 | 3.4:-84017587 | MS.gene013563:CDS |
| ATATCTATGGAACGTTAATC+AGG | 0.429417 | 3.4:-84017829 | MS.gene013563:CDS |
| GGCCAGGTTGCAGATCCCTT+TGG | 0.430320 | 3.4:+84017585 | None:intergenic |
| ACCCCACGCATGAGCATTGT+TGG | 0.432490 | 3.4:+84017467 | None:intergenic |
| TTTACCAATTAAGCATAGTT+GGG | 0.432871 | 3.4:+84018303 | None:intergenic |
| CTGGACGATACCCGATTCTC+AGG | 0.435686 | 3.4:-84018847 | MS.gene013563:CDS |
| CCCATCAGGACTAAATTTCA+TGG | 0.436002 | 3.4:+84019556 | None:intergenic |
| TTAAATAATACCTGCCCATC+CGG | 0.437117 | 3.4:+84018774 | None:intergenic |
| CCAATCAACAACCTGAGAAT+CGG | 0.440688 | 3.4:+84018836 | None:intergenic |
| GTATAACAGGGAGGGATTGT+TGG | 0.454570 | 3.4:-84018681 | MS.gene013563:intron |
| TGGTCATTGTGACTGCAGGC+TGG | 0.456531 | 3.4:-84017443 | MS.gene013563:CDS |
| AAATTGCACCTTCATGCGCT+TGG | 0.462786 | 3.4:+84019582 | None:intergenic |
| ACCATGAAATTTAGTCCTGA+TGG | 0.466588 | 3.4:-84019557 | MS.gene013563:CDS |
| TCGGGTGTGGCAAGTGGTTG+AGG | 0.469415 | 3.4:-84019498 | MS.gene013563:CDS |
| TACCGCAACTGATGCGTTTG+AGG | 0.470561 | 3.4:+84017752 | None:intergenic |
| CAATGCTCATGCGTGGGGTA+TGG | 0.470834 | 3.4:-84017463 | MS.gene013563:CDS |
| CTAACTTTCTTAGATTTCAT+GGG | 0.472148 | 3.4:+84017792 | None:intergenic |
| GATCTTTAGAAGGAAATTGT+TGG | 0.473234 | 3.4:-84018659 | MS.gene013563:CDS |
| TGGCTACAGGTGGTGAAGAT+GGG | 0.475427 | 3.4:-84019526 | MS.gene013563:CDS |
| GTAGCCAGATACTGCCCATC+AGG | 0.476689 | 3.4:+84019542 | None:intergenic |
| TCACAAGTCAGAATCCTTGA+TGG | 0.477119 | 3.4:-84018101 | MS.gene013563:CDS |
| AGGATTGTGTAAATGTCTCT+GGG | 0.480040 | 3.4:-84019850 | MS.gene013563:CDS |
| ACATTGGACTGCCTGTGTTA+AGG | 0.480580 | 3.4:+84017910 | None:intergenic |
| TTGTGACTGCAGGCTGGGAC+GGG | 0.481187 | 3.4:-84017437 | MS.gene013563:CDS |
| AGAGGATGTTGTGTCTATTA+GGG | 0.481348 | 3.4:-84020275 | MS.gene013563:CDS |
| AAGATGGGGTTGTTCGGGTG+TGG | 0.485043 | 3.4:-84019511 | MS.gene013563:CDS |
| GATGGGCAGTATCTGGCTAC+AGG | 0.486225 | 3.4:-84019539 | MS.gene013563:CDS |
| AGGAAGCTTCTCCTCGGGCC+AGG | 0.488808 | 3.4:+84017569 | None:intergenic |
| AACGGTAAATAGGGCGAGAA+GGG | 0.489976 | 3.4:-84019762 | MS.gene013563:CDS |
| ATTGTGACTGCAGGCTGGGA+CGG | 0.490386 | 3.4:-84017438 | MS.gene013563:CDS |
| CAATCAACAACCTGAGAATC+GGG | 0.492398 | 3.4:+84018837 | None:intergenic |
| AAATCAGTTGGTAGTTGCTA+AGG | 0.492824 | 3.4:-84019879 | MS.gene013563:CDS |
| AGAGAAAGAAGCAGGTGGGT+TGG | 0.493090 | 3.4:+84017638 | None:intergenic |
| ACTTCATTTCAAACGGGTAC+AGG | 0.498608 | 3.4:+84017384 | None:intergenic |
| ACCAGATAATCACTTGCAGC+TGG | 0.500109 | 3.4:-84018329 | MS.gene013563:intron |
| GAAACAGGAAGCTTCTCCTC+GGG | 0.503691 | 3.4:+84017564 | None:intergenic |
| CGAAACAGGAAGCTTCTCCT+CGG | 0.504206 | 3.4:+84017563 | None:intergenic |
| AGTCACACTTCATTTCAAAC+GGG | 0.505736 | 3.4:+84017378 | None:intergenic |
| TCCAAATTTCCATCTTGAGA+TGG | 0.506574 | 3.4:+84019941 | None:intergenic |
| AAAGAGTGTGAGAGAGCGTA+GGG | 0.507140 | 3.4:-84020167 | MS.gene013563:CDS |
| AACATCATTGCTGCGAAAGT+CGG | 0.511514 | 3.4:-84017523 | MS.gene013563:CDS |
| AGTGAATCGTGACCATTGCT+TGG | 0.512373 | 3.4:-84019081 | MS.gene013563:CDS |
| ACGCATCAGTTGCGGTACCT+TGG | 0.514857 | 3.4:-84017746 | MS.gene013563:CDS |
| CAATTGAGAGAGATTATTCA+CGG | 0.518723 | 3.4:+84019418 | None:intergenic |
| GAAATTTGGAGAAAAGAATG+AGG | 0.519213 | 3.4:-84019928 | MS.gene013563:CDS |
| TTCATTAGTGGATCCATAGA+CGG | 0.522706 | 3.4:-84018882 | MS.gene013563:CDS |
| AACTTTCATCGCTTTACTTG+AGG | 0.524102 | 3.4:-84019613 | MS.gene013563:CDS |
| ACGGTAAAGTAAATGCTTGA+GGG | 0.525591 | 3.4:+84019437 | None:intergenic |
| ATGTTATCGACCGGATGGGC+AGG | 0.526250 | 3.4:-84018784 | MS.gene013563:intron |
| AATCATATGGGTAGTTTCAG+TGG | 0.527946 | 3.4:-84020328 | None:intergenic |
| TTGATAATGATAGAGAAGAA+GGG | 0.528008 | 3.4:-84019703 | MS.gene013563:CDS |
| TCAGTGGAGAAGAAGATTGT+CGG | 0.529362 | 3.4:-84020312 | MS.gene013563:CDS |
| GGGGAGGTTTATGAAGAGCA+TGG | 0.530487 | 3.4:-84020146 | MS.gene013563:CDS |
| TAAATAGGGCGAGAAGGGGT+TGG | 0.531097 | 3.4:-84019757 | MS.gene013563:CDS |
| AGATAGTAGTGGTTCTGAAG+AGG | 0.531135 | 3.4:-84020050 | MS.gene013563:CDS |
| CACGGTAAAGTAAATGCTTG+AGG | 0.533661 | 3.4:+84019436 | None:intergenic |
| GCTATGCAGTCTCAGGGTGT+AGG | 0.538360 | 3.4:-84019679 | MS.gene013563:CDS |
| ATAACTTTCTTGGAATCTTG+AGG | 0.539357 | 3.4:+84018140 | None:intergenic |
| AAATCACATTAAGCCCATCA+AGG | 0.539545 | 3.4:+84018087 | None:intergenic |
| GACTGCAGTATGTTATCGAC+CGG | 0.543308 | 3.4:-84018793 | MS.gene013563:CDS |
| TCTGGGGTGTCTCATTGTCA+AGG | 0.544039 | 3.4:-84019833 | MS.gene013563:CDS |
| AAGTAAAGGTCCGTCAATGT+AGG | 0.547509 | 3.4:-84019649 | MS.gene013563:CDS |
| TGTGCATCATTTACCTCAGA+CGG | 0.548187 | 3.4:-84017888 | MS.gene013563:CDS |
| GGTATGGTCATTGTGACTGC+AGG | 0.549386 | 3.4:-84017447 | MS.gene013563:CDS |
| CCATGAAATTTAGTCCTGAT+GGG | 0.550381 | 3.4:-84019556 | MS.gene013563:CDS |
| TGGTTCAGAGAGAAAGAAGC+AGG | 0.550963 | 3.4:+84017630 | None:intergenic |
| TTCCTCAAACGCATCAGTTG+CGG | 0.553600 | 3.4:-84017754 | MS.gene013563:CDS |
| GGTCATTGTGACTGCAGGCT+GGG | 0.557152 | 3.4:-84017442 | MS.gene013563:CDS |
| CACAAGTCAGAATCCTTGAT+GGG | 0.560457 | 3.4:-84018100 | MS.gene013563:CDS |
| GAGTGATTGTTCAAATCAGT+TGG | 0.560983 | 3.4:-84019891 | MS.gene013563:CDS |
| TAAAATATGTTTCCCGTCTG+AGG | 0.561223 | 3.4:+84017875 | None:intergenic |
| TACCAACAATGCTCATGCGT+GGG | 0.562604 | 3.4:-84017469 | MS.gene013563:CDS |
| GGTTGTTCGGGTGTGGCAAG+TGG | 0.564414 | 3.4:-84019504 | MS.gene013563:CDS |
| GCAGTATGTTATCGACCGGA+TGG | 0.565468 | 3.4:-84018789 | MS.gene013563:CDS |
| CAAAGAGTGTGAGAGAGCGT+AGG | 0.568692 | 3.4:-84020168 | MS.gene013563:CDS |
| AACCATTGCATGAGTTCCGT+GGG | 0.575505 | 3.4:-84019286 | MS.gene013563:CDS |
| GAACGGTAAATAGGGCGAGA+AGG | 0.577669 | 3.4:-84019763 | MS.gene013563:CDS |
| AAAAGAAACTTCCTGGCAGA+GGG | 0.579638 | 3.4:-84018282 | MS.gene013563:CDS |
| AAAGAGTTTGAGGATGCAGA+TGG | 0.580833 | 3.4:-84019800 | MS.gene013563:CDS |
| GGGAGGTTTATGAAGAGCAT+GGG | 0.583225 | 3.4:-84020145 | MS.gene013563:CDS |
| CACGATTCACTTGCCACAGT+CGG | 0.583228 | 3.4:+84019093 | None:intergenic |
| CTCTAGTGTGAGTTCTTCGG+AGG | 0.585376 | 3.4:-84019993 | MS.gene013563:CDS |
| AAGCCAGTTATCCCTCTGCC+AGG | 0.589263 | 3.4:+84018271 | None:intergenic |
| AAACCATTGCATGAGTTCCG+TGG | 0.589350 | 3.4:-84019287 | MS.gene013563:CDS |
| GGCTACAGGTGGTGAAGATG+GGG | 0.590519 | 3.4:-84019525 | MS.gene013563:CDS |
| CAAGATATCCAAGCGCATGA+AGG | 0.592474 | 3.4:-84019590 | MS.gene013563:CDS |
| GAAAGAAGAAGAGATAGTAG+TGG | 0.594074 | 3.4:-84020061 | MS.gene013563:CDS |
| TGGTGATGTGGTTACTAGAA+CGG | 0.595840 | 3.4:-84019780 | MS.gene013563:CDS |
| AATAACTTGCCATCTCAAGA+TGG | 0.595950 | 3.4:-84019950 | MS.gene013563:CDS |
| GGTAGTTGCTAAGGAATCTG+AGG | 0.598779 | 3.4:-84019870 | MS.gene013563:CDS |
| AAACTTCACTTCTATGCCCA+CGG | 0.602774 | 3.4:+84019270 | None:intergenic |
| GTGTAGGCTTCAGAAAGTAA+AGG | 0.602811 | 3.4:-84019663 | MS.gene013563:CDS |
| GTGCATCATTTACCTCAGAC+GGG | 0.603220 | 3.4:-84017887 | MS.gene013563:CDS |
| GAGGTAAATGATGCACACAT+TGG | 0.603566 | 3.4:+84017894 | None:intergenic |
| TAGTGGATCCATAGACGGAA+AGG | 0.604269 | 3.4:-84018877 | MS.gene013563:CDS |
| TAACTTTCTTAGATTTCATG+GGG | 0.605262 | 3.4:+84017793 | None:intergenic |
| AAGAGGAATTTAGTTCATGT+CGG | 0.608009 | 3.4:-84020033 | MS.gene013563:CDS |
| GTGAAAACACTTCCAAGCAA+TGG | 0.611173 | 3.4:+84019069 | None:intergenic |
| TGCCCACGGAACTCATGCAA+TGG | 0.612153 | 3.4:+84019284 | None:intergenic |
| AAATTTGGAGAAAAGAATGA+GGG | 0.614888 | 3.4:-84019927 | MS.gene013563:CDS |
| CGGTAAAGTAAATGCTTGAG+GGG | 0.617370 | 3.4:+84019438 | None:intergenic |
| AGAGTGTGAGAGAGCGTAGG+GGG | 0.617428 | 3.4:-84020165 | MS.gene013563:CDS |
| CAGTATGTTATCGACCGGAT+GGG | 0.618616 | 3.4:-84018788 | MS.gene013563:CDS |
| TCAGTTGCGGTACCTTGGCA+CGG | 0.626640 | 3.4:-84017741 | MS.gene013563:CDS |
| TTCAGAGAGAAAGAAGCAGG+TGG | 0.627337 | 3.4:+84017633 | None:intergenic |
| ACAACCGGAAGATCTTAGGC+GGG | 0.627533 | 3.4:+84019315 | None:intergenic |
| AACAACACAAGCTGAATCTG+CGG | 0.632119 | 3.4:+84019340 | None:intergenic |
| TCAATGTAGGAAGAAAATGA+AGG | 0.633828 | 3.4:-84019636 | MS.gene013563:CDS |
| GTACCAACAATGCTCATGCG+TGG | 0.637345 | 3.4:-84017470 | MS.gene013563:CDS |
| TCAGAGAGAAAGAAGCAGGT+GGG | 0.641323 | 3.4:+84017634 | None:intergenic |
| GGAGGTTTCAAACCGTGCCA+AGG | 0.641872 | 3.4:+84017729 | None:intergenic |
| TGAGGATGCAGATGGTGATG+TGG | 0.643720 | 3.4:-84019792 | MS.gene013563:CDS |
| AACAACCGGAAGATCTTAGG+CGG | 0.646128 | 3.4:+84019314 | None:intergenic |
| AAGGGAGCTATGCAGTCTCA+GGG | 0.648697 | 3.4:-84019685 | MS.gene013563:CDS |
| GGGATCTGCAACCTGGCCCG+AGG | 0.648859 | 3.4:-84017580 | MS.gene013563:CDS |
| ACCAACAATGCTCATGCGTG+GGG | 0.652027 | 3.4:-84017468 | MS.gene013563:CDS |
| TGTAATTGCATAACAACTTG+TGG | 0.663052 | 3.4:+84017663 | None:intergenic |
| GGTGTGGCAAGTGGTTGAGG+AGG | 0.668449 | 3.4:-84019495 | MS.gene013563:CDS |
| ACGGTAAATAGGGCGAGAAG+GGG | 0.672129 | 3.4:-84019761 | MS.gene013563:CDS |
| AGAAAGTTAGGTCTTGTGAG+CGG | 0.675224 | 3.4:-84017779 | MS.gene013563:CDS |
| CTGACAAAACTGTCCGACTG+TGG | 0.676021 | 3.4:-84019106 | MS.gene013563:CDS |
| GGGCAGTATCTGGCTACAGG+TGG | 0.702356 | 3.4:-84019536 | MS.gene013563:CDS |
| ATTGAGATCGATGACGTGCG+TGG | 0.720656 | 3.4:-84019726 | MS.gene013563:CDS |
| AAGAGTGTGAGAGAGCGTAG+GGG | 0.726141 | 3.4:-84020166 | MS.gene013563:CDS |
| GGATTGTGTAAATGTCTCTG+GGG | 0.731454 | 3.4:-84019849 | MS.gene013563:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAACTTAAATGGAATA+TGG | + | chr3.4:84019133-84019152 | None:intergenic | 15.0% |
| !! | AAATGTTAATCAAGTTATAT+TGG | - | chr3.4:84019270-84019289 | MS.gene013563:CDS | 15.0% |
| !! | AATGTTAATCAAGTTATATT+GGG | - | chr3.4:84019271-84019290 | MS.gene013563:CDS | 15.0% |
| !! | ATAAAAACATTCCAAAATTA+CGG | - | chr3.4:84020303-84020322 | MS.gene013563:CDS | 15.0% |
| !!! | GTTTTAATAATCAAAATGTT+AGG | - | chr3.4:84019191-84019210 | MS.gene013563:intron | 15.0% |
| !! | AATTGTAGTTGAAAATTCAT+TGG | - | chr3.4:84017607-84017626 | MS.gene013563:CDS | 20.0% |
| !! | GAATAATATGATGTATAACA+GGG | - | chr3.4:84019021-84019040 | MS.gene013563:intron | 20.0% |
| !! | TAAAAACATTCCAAAATTAC+GGG | - | chr3.4:84020304-84020323 | MS.gene013563:CDS | 20.0% |
| !!! | AGAATACTATCTAAAATTTG+AGG | + | chr3.4:84019709-84019728 | None:intergenic | 20.0% |
| !!! | ATAACTTGATTAACATTTTG+CGG | + | chr3.4:84019268-84019287 | None:intergenic | 20.0% |
| !!! | GTTCATTACATTTTATTTTC+AGG | - | chr3.4:84019781-84019800 | MS.gene013563:CDS | 20.0% |
| !!! | TGTTGGTTTTATAAAATATC+AGG | - | chr3.4:84019072-84019091 | MS.gene013563:CDS | 20.0% |
| ! | AAATGGAATATGGAGATATA+TGG | + | chr3.4:84019123-84019142 | None:intergenic | 25.0% |
| ! | AAATTTGGAGAAAAGAATGA+GGG | - | chr3.4:84017787-84017806 | MS.gene013563:CDS | 25.0% |
| ! | AAGCACATGTTTAAATTGAA+TGG | + | chr3.4:84018979-84018998 | None:intergenic | 25.0% |
| ! | AATGGAATATGGAGATATAT+GGG | + | chr3.4:84019122-84019141 | None:intergenic | 25.0% |
| ! | AATTATATGTTCTGTCACTA+AGG | - | chr3.4:84019759-84019778 | MS.gene013563:CDS | 25.0% |
| ! | AATTGAAAACCAGAAATGTT+AGG | + | chr3.4:84019356-84019375 | None:intergenic | 25.0% |
| ! | AGTATGTAAGGATTTAACAA+AGG | + | chr3.4:84019672-84019691 | None:intergenic | 25.0% |
| ! | ATGAAATAATCTTCATCAAC+AGG | + | chr3.4:84018817-84018836 | None:intergenic | 25.0% |
| ! | ATTGATAGATAAAGAGTTTG+AGG | - | chr3.4:84017904-84017923 | MS.gene013563:CDS | 25.0% |
| ! | CGAATAATATGATGTATAAC+AGG | - | chr3.4:84019020-84019039 | MS.gene013563:intron | 25.0% |
| ! | CTAACTTTCTTAGATTTCAT+GGG | + | chr3.4:84019925-84019944 | None:intergenic | 25.0% |
| ! | GATGAAGATTATTTCATTAG+TGG | - | chr3.4:84018820-84018839 | MS.gene013563:CDS | 25.0% |
| ! | GGGTCAAAAAATAACTTAAA+TGG | + | chr3.4:84019140-84019159 | None:intergenic | 25.0% |
| ! | TAACTTTCTTAGATTTCATG+GGG | + | chr3.4:84019924-84019943 | None:intergenic | 25.0% |
| ! | TACTTCTTATTCAAAATCTG+TGG | + | chr3.4:84019230-84019249 | None:intergenic | 25.0% |
| ! | TTTAAACATGTGCTTTATAG+AGG | - | chr3.4:84018984-84019003 | MS.gene013563:intron | 25.0% |
| ! | TTTACCAATTAAGCATAGTT+GGG | + | chr3.4:84019414-84019433 | None:intergenic | 25.0% |
| ! | TTTATGGATAAGGAAAAACT+TGG | - | chr3.4:84018328-84018347 | MS.gene013563:intron | 25.0% |
| !! | ATGATGATGATGATGATAAA+GGG | - | chr3.4:84017477-84017496 | MS.gene013563:CDS | 25.0% |
| !! | CACAATTTGTTTGTATTTGA+TGG | - | chr3.4:84018761-84018780 | MS.gene013563:intron | 25.0% |
| !! | CTTTTTCTCTGACAATTTTT+TGG | - | chr3.4:84019514-84019533 | MS.gene013563:CDS | 25.0% |
| !! | GACATTCAATTGTTCATTTT+CGG | + | chr3.4:84020016-84020035 | None:intergenic | 25.0% |
| !! | TTTTACCAATTAAGCATAGT+TGG | + | chr3.4:84019415-84019434 | None:intergenic | 25.0% |
| !! | TTTTCCTTATCCATAAACAA+TGG | + | chr3.4:84018325-84018344 | None:intergenic | 25.0% |
| !!! | AAATTCATTGGATTTTGAGA+AGG | - | chr3.4:84017619-84017638 | MS.gene013563:CDS | 25.0% |
| !!! | TTGATAATGATAGAGAAGAA+GGG | - | chr3.4:84018011-84018030 | MS.gene013563:intron | 25.0% |
| !!! | TTGATTTTGATTATGAAGTG+TGG | - | chr3.4:84017513-84017532 | MS.gene013563:CDS | 25.0% |
| !!! | TTTTTTGACCCTTTGATTTT+TGG | - | chr3.4:84019149-84019168 | MS.gene013563:intron | 25.0% |
| AAGAAGATACTGCATTCAAA+AGG | + | chr3.4:84018578-84018597 | None:intergenic | 30.0% | |
| AAGACTCCAAGAAAAAATCT+TGG | + | chr3.4:84020107-84020126 | None:intergenic | 30.0% | |
| AATATGATGTATAACAGGGA+GGG | - | chr3.4:84019025-84019044 | MS.gene013563:intron | 30.0% | |
| ACATGTAACCATAACTTTCT+TGG | + | chr3.4:84019587-84019606 | None:intergenic | 30.0% | |
| AGGACTCTAATGTATATCTA+TGG | - | chr3.4:84019872-84019891 | MS.gene013563:CDS | 30.0% | |
| ATAACTTTCTTGGAATCTTG+AGG | + | chr3.4:84019577-84019596 | None:intergenic | 30.0% | |
| ATATCTATGGAACGTTAATC+AGG | - | chr3.4:84019885-84019904 | MS.gene013563:CDS | 30.0% | |
| ATCATCATCATCATCATCAT+CGG | + | chr3.4:84017474-84017493 | None:intergenic | 30.0% | |
| ATTGGTAAAAAGAAACTTCC+TGG | - | chr3.4:84019425-84019444 | MS.gene013563:CDS | 30.0% | |
| CAATTGAGAGAGATTATTCA+CGG | + | chr3.4:84018299-84018318 | None:intergenic | 30.0% | |
| CCATGAAATCTAAGAAAGTT+AGG | - | chr3.4:84019923-84019942 | MS.gene013563:CDS | 30.0% | |
| CCTAACTTTCTTAGATTTCA+TGG | + | chr3.4:84019926-84019945 | None:intergenic | 30.0% | |
| GAAATTTGGAGAAAAGAATG+AGG | - | chr3.4:84017786-84017805 | MS.gene013563:CDS | 30.0% | |
| GCATTTCTATTCCAATTTGT+AGG | - | chr3.4:84018692-84018711 | MS.gene013563:intron | 30.0% | |
| TAATATGATGTATAACAGGG+AGG | - | chr3.4:84019024-84019043 | MS.gene013563:intron | 30.0% | |
| TCAAGATTCCAAGAAAGTTA+TGG | - | chr3.4:84019576-84019595 | MS.gene013563:CDS | 30.0% | |
| TCAATGTAGGAAGAAAATGA+AGG | - | chr3.4:84018078-84018097 | MS.gene013563:CDS | 30.0% | |
| TCAATTGACACCATTGTTTA+TGG | - | chr3.4:84018312-84018331 | MS.gene013563:CDS | 30.0% | |
| TGTAATTGCATAACAACTTG+TGG | + | chr3.4:84020054-84020073 | None:intergenic | 30.0% | |
| TTGATTATGAAGTGTGGATT+CGG | - | chr3.4:84017519-84017538 | MS.gene013563:CDS | 30.0% | |
| ! | AAGAGGAATTTAGTTCATGT+CGG | - | chr3.4:84017681-84017700 | MS.gene013563:CDS | 30.0% |
| ! | GATCTTTAGAAGGAAATTGT+TGG | - | chr3.4:84019055-84019074 | MS.gene013563:intron | 30.0% |
| ! | GATGATGATGATGATGATAA+AGG | - | chr3.4:84017476-84017495 | MS.gene013563:CDS | 30.0% |
| ! | GTGTTTTCACACAGTAATTA+TGG | - | chr3.4:84018658-84018677 | MS.gene013563:CDS | 30.0% |
| ! | TCATTTTCTTCCTACATTGA+CGG | + | chr3.4:84018078-84018097 | None:intergenic | 30.0% |
| ! | TGATGATGATGATGATAAAG+GGG | - | chr3.4:84017478-84017497 | MS.gene013563:CDS | 30.0% |
| !! | CAGAAGTACCAAAAATCAAA+GGG | + | chr3.4:84019160-84019179 | None:intergenic | 30.0% |
| !! | GTTGATAATGATAGAGAAGA+AGG | - | chr3.4:84018010-84018029 | MS.gene013563:intron | 30.0% |
| !! | TCAGAAGTACCAAAAATCAA+AGG | + | chr3.4:84019161-84019180 | None:intergenic | 30.0% |
| !! | TTTTGAGAAGGAAGAGATTA+TGG | - | chr3.4:84017631-84017650 | MS.gene013563:CDS | 30.0% |
| !!! | CAATGATGTTTTTTTGGTCT+TGG | + | chr3.4:84020181-84020200 | None:intergenic | 30.0% |
| !!! | TCTGAACCAAGATTTTTTCT+TGG | - | chr3.4:84020098-84020117 | MS.gene013563:CDS | 30.0% |
| AAATCACATTAAGCCCATCA+AGG | + | chr3.4:84019630-84019649 | None:intergenic | 35.0% | |
| AACTTTCATCGCTTTACTTG+AGG | - | chr3.4:84018101-84018120 | MS.gene013563:CDS | 35.0% | |
| AAGAGGATGTTGTGTCTATT+AGG | - | chr3.4:84017438-84017457 | MS.gene013563:CDS | 35.0% | |
| AATCACTTAAGACTTGAGCT+TGG | - | chr3.4:84019329-84019348 | MS.gene013563:CDS | 35.0% | |
| AATTGTGAGATGAACTGTTG+TGG | + | chr3.4:84018748-84018767 | None:intergenic | 35.0% | |
| ACCATGAAATTTAGTCCTGA+TGG | - | chr3.4:84018157-84018176 | MS.gene013563:intron | 35.0% | |
| ACCTAAAGAAGCCTACAAAT+TGG | + | chr3.4:84018706-84018725 | None:intergenic | 35.0% | |
| ACGGTAAAGTAAATGCTTGA+GGG | + | chr3.4:84018280-84018299 | None:intergenic | 35.0% | |
| AGAGGATGTTGTGTCTATTA+GGG | - | chr3.4:84017439-84017458 | MS.gene013563:CDS | 35.0% | |
| AGGATTGTGTAAATGTCTCT+GGG | - | chr3.4:84017864-84017883 | MS.gene013563:CDS | 35.0% | |
| CCATGAAATTTAGTCCTGAT+GGG | - | chr3.4:84018158-84018177 | MS.gene013563:intron | 35.0% | |
| CTGTTGTGGTCAAACAAATT+AGG | + | chr3.4:84018734-84018753 | None:intergenic | 35.0% | |
| GAAAGAAGAAGAGATAGTAG+TGG | - | chr3.4:84017653-84017672 | MS.gene013563:CDS | 35.0% | |
| GACACCATTGTTTATGGATA+AGG | - | chr3.4:84018318-84018337 | MS.gene013563:CDS | 35.0% | |
| GAGTGATTGTTCAAATCAGT+TGG | - | chr3.4:84017823-84017842 | MS.gene013563:CDS | 35.0% | |
| GATTCCCAACTATGCTTAAT+TGG | - | chr3.4:84019407-84019426 | MS.gene013563:CDS | 35.0% | |
| GCGAAATCAACAAGTATGTA+AGG | + | chr3.4:84019684-84019703 | None:intergenic | 35.0% | |
| GGTTACTAGAACGGTAAATA+GGG | - | chr3.4:84017943-84017962 | MS.gene013563:intron | 35.0% | |
| TAAAATATGTTTCCCGTCTG+AGG | + | chr3.4:84019842-84019861 | None:intergenic | 35.0% | |
| TCCAAATTTCCATCTTGAGA+TGG | + | chr3.4:84017776-84017795 | None:intergenic | 35.0% | |
| TCCAATTTGTAGGCTTCTTT+AGG | - | chr3.4:84018702-84018721 | MS.gene013563:intron | 35.0% | |
| TGGTTACTAGAACGGTAAAT+AGG | - | chr3.4:84017942-84017961 | MS.gene013563:intron | 35.0% | |
| TTAAATAATACCTGCCCATC+CGG | + | chr3.4:84018943-84018962 | None:intergenic | 35.0% | |
| ! | AATAACTTGCCATCTCAAGA+TGG | - | chr3.4:84017764-84017783 | MS.gene013563:CDS | 35.0% |
| ! | AATTGTTCATTTTCGGTGAC+TGG | + | chr3.4:84020009-84020028 | None:intergenic | 35.0% |
| ! | ACATATTTTATCAGCATGCG+AGG | - | chr3.4:84019852-84019871 | MS.gene013563:CDS | 35.0% |
| ! | TTCATTAGTGGATCCATAGA+CGG | - | chr3.4:84018832-84018851 | MS.gene013563:CDS | 35.0% |
| ! | TTCTTGGAGTCTTTTCCAAA+GGG | - | chr3.4:84020114-84020133 | MS.gene013563:CDS | 35.0% |
| ! | TTTCTTGGAGTCTTTTCCAA+AGG | - | chr3.4:84020113-84020132 | MS.gene013563:CDS | 35.0% |
| !! | AAATCAGTTGGTAGTTGCTA+AGG | - | chr3.4:84017835-84017854 | MS.gene013563:CDS | 35.0% |
| !! | TTATTTTCAGGCCTTAACAC+AGG | - | chr3.4:84019793-84019812 | MS.gene013563:CDS | 35.0% |
| !!! | TCGCAGCAATGATGTTTTTT+TGG | + | chr3.4:84020187-84020206 | None:intergenic | 35.0% |
| AAAAAGAAACTTCCTGGCAG+AGG | - | chr3.4:84019431-84019450 | MS.gene013563:CDS | 40.0% | |
| AAAAGAAACTTCCTGGCAGA+GGG | - | chr3.4:84019432-84019451 | MS.gene013563:CDS | 40.0% | |
| AAACTTCACTTCTATGCCCA+CGG | + | chr3.4:84018447-84018466 | None:intergenic | 40.0% | |
| AAAGAGTTTGAGGATGCAGA+TGG | - | chr3.4:84017914-84017933 | MS.gene013563:CDS | 40.0% | |
| AACAACACAAGCTGAATCTG+CGG | + | chr3.4:84018377-84018396 | None:intergenic | 40.0% | |
| AACATCATTGCTGCGAAAGT+CGG | - | chr3.4:84020191-84020210 | MS.gene013563:CDS | 40.0% | |
| AAGTAAAGGTCCGTCAATGT+AGG | - | chr3.4:84018065-84018084 | MS.gene013563:intron | 40.0% | |
| CAATCAACAACCTGAGAATC+GGG | + | chr3.4:84018880-84018899 | None:intergenic | 40.0% | |
| CACAAGTCAGAATCCTTGAT+GGG | - | chr3.4:84019614-84019633 | MS.gene013563:CDS | 40.0% | |
| CACGGTAAAGTAAATGCTTG+AGG | + | chr3.4:84018281-84018300 | None:intergenic | 40.0% | |
| CCAATCAACAACCTGAGAAT+CGG | + | chr3.4:84018881-84018900 | None:intergenic | 40.0% | |
| CCCATCAGGACTAAATTTCA+TGG | + | chr3.4:84018161-84018180 | None:intergenic | 40.0% | |
| CGGTAAAGTAAATGCTTGAG+GGG | + | chr3.4:84018279-84018298 | None:intergenic | 40.0% | |
| GAGGATTGTGTAAATGTCTC+TGG | - | chr3.4:84017863-84017882 | MS.gene013563:CDS | 40.0% | |
| GAGGTAAATGATGCACACAT+TGG | + | chr3.4:84019823-84019842 | None:intergenic | 40.0% | |
| GCCATCTCAAGATGGAAATT+TGG | - | chr3.4:84017772-84017791 | MS.gene013563:CDS | 40.0% | |
| GGATTGTGTAAATGTCTCTG+GGG | - | chr3.4:84017865-84017884 | MS.gene013563:CDS | 40.0% | |
| GGGATTGTTGGATCTTTAGA+AGG | - | chr3.4:84019045-84019064 | MS.gene013563:intron | 40.0% | |
| GTGAAAACACTTCCAAGCAA+TGG | + | chr3.4:84018648-84018667 | None:intergenic | 40.0% | |
| GTGTAGGCTTCAGAAAGTAA+AGG | - | chr3.4:84018051-84018070 | MS.gene013563:intron | 40.0% | |
| TCACAAGTCAGAATCCTTGA+TGG | - | chr3.4:84019613-84019632 | MS.gene013563:CDS | 40.0% | |
| TCAGTGGAGAAGAAGATTGT+CGG | - | chr3.4:84017402-84017421 | MS.gene013563:CDS | 40.0% | |
| TGTGCATCATTTACCTCAGA+CGG | - | chr3.4:84019826-84019845 | MS.gene013563:CDS | 40.0% | |
| TTGCTCTAGTGTGAGTTCTT+CGG | - | chr3.4:84017718-84017737 | MS.gene013563:CDS | 40.0% | |
| ! | AGAAAGTTAGGTCTTGTGAG+CGG | - | chr3.4:84019935-84019954 | MS.gene013563:CDS | 40.0% |
| ! | GCAATGGTTTTTCCAACAAC+CGG | + | chr3.4:84018417-84018436 | None:intergenic | 40.0% |
| ! | TGGGCATAGAAGTGAAGTTT+TGG | - | chr3.4:84018447-84018466 | MS.gene013563:intron | 40.0% |
| ! | TGGTGATGTGGTTACTAGAA+CGG | - | chr3.4:84017934-84017953 | MS.gene013563:intron | 40.0% |
| ! | TTCGGAGGAATTTGGTTTAG+TGG | - | chr3.4:84017736-84017755 | MS.gene013563:CDS | 40.0% |
| !! | AGATAGTAGTGGTTCTGAAG+AGG | - | chr3.4:84017664-84017683 | MS.gene013563:CDS | 40.0% |
| !!! | GTGAAGTTTTGGATCTCTCT+TGG | - | chr3.4:84018458-84018477 | MS.gene013563:intron | 40.0% |
| !!! | TCGGTTTTTTGATGCTGAAG+AGG | - | chr3.4:84017421-84017440 | MS.gene013563:CDS | 40.0% |
| AAACCATTGCATGAGTTCCG+TGG | - | chr3.4:84018427-84018446 | MS.gene013563:intron | 45.0% | |
| AAATTGCACCTTCATGCGCT+TGG | + | chr3.4:84018135-84018154 | None:intergenic | 45.0% | |
| AACAACCGGAAGATCTTAGG+CGG | + | chr3.4:84018403-84018422 | None:intergenic | 45.0% | |
| AACCATTGCATGAGTTCCGT+GGG | - | chr3.4:84018428-84018447 | MS.gene013563:intron | 45.0% | |
| AACGGTAAATAGGGCGAGAA+GGG | - | chr3.4:84017952-84017971 | MS.gene013563:intron | 45.0% | |
| ACATTGGACTGCCTGTGTTA+AGG | + | chr3.4:84019807-84019826 | None:intergenic | 45.0% | |
| ACCAGATAATCACTTGCAGC+TGG | - | chr3.4:84019385-84019404 | MS.gene013563:CDS | 45.0% | |
| AGTGAATCGTGACCATTGCT+TGG | - | chr3.4:84018633-84018652 | MS.gene013563:intron | 45.0% | |
| ATGCTTGAGGGGTCAATTTC+AGG | + | chr3.4:84018268-84018287 | None:intergenic | 45.0% | |
| CAAGATATCCAAGCGCATGA+AGG | - | chr3.4:84018124-84018143 | MS.gene013563:CDS | 45.0% | |
| CAGTATGTTATCGACCGGAT+GGG | - | chr3.4:84018926-84018945 | MS.gene013563:intron | 45.0% | |
| GACTGCAGTATGTTATCGAC+CGG | - | chr3.4:84018921-84018940 | MS.gene013563:CDS | 45.0% | |
| GAGCTTGGTCCTAACATTTC+TGG | - | chr3.4:84019344-84019363 | MS.gene013563:CDS | 45.0% | |
| GGTAGTTGCTAAGGAATCTG+AGG | - | chr3.4:84017844-84017863 | MS.gene013563:CDS | 45.0% | |
| GTATAACAGGGAGGGATTGT+TGG | - | chr3.4:84019033-84019052 | MS.gene013563:intron | 45.0% | |
| GTGAGTTCTTCGGAGGAATT+TGG | - | chr3.4:84017728-84017747 | MS.gene013563:CDS | 45.0% | |
| GTGCATCATTTACCTCAGAC+GGG | - | chr3.4:84019827-84019846 | MS.gene013563:CDS | 45.0% | |
| TACCAACAATGCTCATGCGT+GGG | - | chr3.4:84020245-84020264 | MS.gene013563:CDS | 45.0% | |
| TCAGAGAGAAAGAAGCAGGT+GGG | + | chr3.4:84020083-84020102 | None:intergenic | 45.0% | |
| TCCAACAACCGGAAGATCTT+AGG | + | chr3.4:84018406-84018425 | None:intergenic | 45.0% | |
| TCCAGCTGCAAGTGATTATC+TGG | + | chr3.4:84019389-84019408 | None:intergenic | 45.0% | |
| TGGTTCAGAGAGAAAGAAGC+AGG | + | chr3.4:84020087-84020106 | None:intergenic | 45.0% | |
| TTCAGAGAGAAAGAAGCAGG+TGG | + | chr3.4:84020084-84020103 | None:intergenic | 45.0% | |
| TTCCTCAAACGCATCAGTTG+CGG | - | chr3.4:84019960-84019979 | MS.gene013563:CDS | 45.0% | |
| ! | AAAGAGTGTGAGAGAGCGTA+GGG | - | chr3.4:84017547-84017566 | MS.gene013563:CDS | 45.0% |
| ! | CCGATTCTCAGGTTGTTGAT+TGG | - | chr3.4:84018878-84018897 | MS.gene013563:CDS | 45.0% |
| ! | GGGAGGTTTATGAAGAGCAT+GGG | - | chr3.4:84017569-84017588 | MS.gene013563:CDS | 45.0% |
| ! | GTACAGGTAGCCCGTAATTT+TGG | + | chr3.4:84020317-84020336 | None:intergenic | 45.0% |
| ! | TAGTGGATCCATAGACGGAA+AGG | - | chr3.4:84018837-84018856 | MS.gene013563:CDS | 45.0% |
| ! | TGTTCATTTTCGGTGACTGG+AGG | + | chr3.4:84020006-84020025 | None:intergenic | 45.0% |
| ! | TTTTCCCGCCTAAGATCTTC+CGG | - | chr3.4:84018395-84018414 | MS.gene013563:intron | 45.0% |
| AAGGGAGCTATGCAGTCTCA+GGG | - | chr3.4:84018029-84018048 | MS.gene013563:intron | 50.0% | |
| ACAACCGGAAGATCTTAGGC+GGG | + | chr3.4:84018402-84018421 | None:intergenic | 50.0% | |
| ACCAACAATGCTCATGCGTG+GGG | - | chr3.4:84020246-84020265 | MS.gene013563:CDS | 50.0% | |
| ACGGTAAATAGGGCGAGAAG+GGG | - | chr3.4:84017953-84017972 | MS.gene013563:intron | 50.0% | |
| AGAGAAAGAAGCAGGTGGGT+TGG | + | chr3.4:84020079-84020098 | None:intergenic | 50.0% | |
| ATTGAGATCGATGACGTGCG+TGG | - | chr3.4:84017988-84018007 | MS.gene013563:intron | 50.0% | |
| CACGATTCACTTGCCACAGT+CGG | + | chr3.4:84018624-84018643 | None:intergenic | 50.0% | |
| CGAAACAGGAAGCTTCTCCT+CGG | + | chr3.4:84020154-84020173 | None:intergenic | 50.0% | |
| CGAGGAGAAGCTTCCTGTTT+CGG | - | chr3.4:84020152-84020171 | MS.gene013563:CDS | 50.0% | |
| CTACGCTCTCTCACACTCTT+TGG | + | chr3.4:84017548-84017567 | None:intergenic | 50.0% | |
| CTCTAGTGTGAGTTCTTCGG+AGG | - | chr3.4:84017721-84017740 | MS.gene013563:CDS | 50.0% | |
| CTGACAAAACTGTCCGACTG+TGG | - | chr3.4:84018608-84018627 | MS.gene013563:intron | 50.0% | |
| GAAACAGGAAGCTTCTCCTC+GGG | + | chr3.4:84020153-84020172 | None:intergenic | 50.0% | |
| GAACGGTAAATAGGGCGAGA+AGG | - | chr3.4:84017951-84017970 | MS.gene013563:intron | 50.0% | |
| GAGGAGAAGCTTCCTGTTTC+GGG | - | chr3.4:84020153-84020172 | MS.gene013563:CDS | 50.0% | |
| GCAGTATGTTATCGACCGGA+TGG | - | chr3.4:84018925-84018944 | MS.gene013563:intron | 50.0% | |
| GCCTAAGATCTTCCGGTTGT+TGG | - | chr3.4:84018402-84018421 | MS.gene013563:intron | 50.0% | |
| GGGGAGGTTTATGAAGAGCA+TGG | - | chr3.4:84017568-84017587 | MS.gene013563:CDS | 50.0% | |
| GGTATGGTCATTGTGACTGC+AGG | - | chr3.4:84020267-84020286 | MS.gene013563:CDS | 50.0% | |
| GTACCAACAATGCTCATGCG+TGG | - | chr3.4:84020244-84020263 | MS.gene013563:CDS | 50.0% | |
| GTGGTGAAGATGGGGTTGTT+CGG | - | chr3.4:84018197-84018216 | MS.gene013563:intron | 50.0% | |
| TAAATAGGGCGAGAAGGGGT+TGG | - | chr3.4:84017957-84017976 | MS.gene013563:intron | 50.0% | |
| TACCGCAACTGATGCGTTTG+AGG | + | chr3.4:84019965-84019984 | None:intergenic | 50.0% | |
| TGGCTACAGGTGGTGAAGAT+GGG | - | chr3.4:84018188-84018207 | MS.gene013563:intron | 50.0% | |
| TGGTGAAGATGGGGTTGTTC+GGG | - | chr3.4:84018198-84018217 | MS.gene013563:intron | 50.0% | |
| TTCCAAAGGGATCTGCAACC+TGG | - | chr3.4:84020127-84020146 | MS.gene013563:CDS | 50.0% | |
| ! | AAGAGTGTGAGAGAGCGTAG+GGG | - | chr3.4:84017548-84017567 | MS.gene013563:CDS | 50.0% |
| ! | CAAAGAGTGTGAGAGAGCGT+AGG | - | chr3.4:84017546-84017565 | MS.gene013563:CDS | 50.0% |
| ! | GAGAAAGAAGCAGGTGGGTT+GGG | + | chr3.4:84020078-84020097 | None:intergenic | 50.0% |
| ! | TAGTCCTGATGGGCAGTATC+TGG | - | chr3.4:84018168-84018187 | MS.gene013563:intron | 50.0% |
| ! | TCTGGGGTGTCTCATTGTCA+AGG | - | chr3.4:84017881-84017900 | MS.gene013563:CDS | 50.0% |
| ! | TGAGGATGCAGATGGTGATG+TGG | - | chr3.4:84017922-84017941 | MS.gene013563:intron | 50.0% |
| !! | AGAAAGAAGCAGGTGGGTTG+GGG | + | chr3.4:84020077-84020096 | None:intergenic | 50.0% |
| !! | CAGAGGGATAACTGGCTTTC+AGG | - | chr3.4:84019448-84019467 | MS.gene013563:CDS | 50.0% |
| AAGATGGGGTTGTTCGGGTG+TGG | - | chr3.4:84018203-84018222 | MS.gene013563:intron | 55.0% | |
| AAGCCAGTTATCCCTCTGCC+AGG | + | chr3.4:84019446-84019465 | None:intergenic | 55.0% | |
| ACGCATCAGTTGCGGTACCT+TGG | - | chr3.4:84019968-84019987 | MS.gene013563:CDS | 55.0% | |
| ATGTTATCGACCGGATGGGC+AGG | - | chr3.4:84018930-84018949 | MS.gene013563:intron | 55.0% | |
| ATTGTGACTGCAGGCTGGGA+CGG | - | chr3.4:84020276-84020295 | MS.gene013563:CDS | 55.0% | |
| CAATGCTCATGCGTGGGGTA+TGG | - | chr3.4:84020251-84020270 | MS.gene013563:CDS | 55.0% | |
| CTGGACGATACCCGATTCTC+AGG | - | chr3.4:84018867-84018886 | MS.gene013563:CDS | 55.0% | |
| CTGGCTACAGGTGGTGAAGA+TGG | - | chr3.4:84018187-84018206 | MS.gene013563:intron | 55.0% | |
| CTTCCTGGCAGAGGGATAAC+TGG | - | chr3.4:84019440-84019459 | MS.gene013563:CDS | 55.0% | |
| GAAGGGAGCTATGCAGTCTC+AGG | - | chr3.4:84018028-84018047 | MS.gene013563:intron | 55.0% | |
| GATGCGCACCTTTCCGTCTA+TGG | + | chr3.4:84018848-84018867 | None:intergenic | 55.0% | |
| GATGGGCAGTATCTGGCTAC+AGG | - | chr3.4:84018175-84018194 | MS.gene013563:intron | 55.0% | |
| GCTATGCAGTCTCAGGGTGT+AGG | - | chr3.4:84018035-84018054 | MS.gene013563:intron | 55.0% | |
| GGAGGTTTCAAACCGTGCCA+AGG | + | chr3.4:84019988-84020007 | None:intergenic | 55.0% | |
| GGCTACAGGTGGTGAAGATG+GGG | - | chr3.4:84018189-84018208 | MS.gene013563:intron | 55.0% | |
| GGTCATTGTGACTGCAGGCT+GGG | - | chr3.4:84020272-84020291 | MS.gene013563:CDS | 55.0% | |
| GTAGCCAGATACTGCCCATC+AGG | + | chr3.4:84018175-84018194 | None:intergenic | 55.0% | |
| TCAGTTGCGGTACCTTGGCA+CGG | - | chr3.4:84019973-84019992 | MS.gene013563:CDS | 55.0% | |
| TGCCCACGGAACTCATGCAA+TGG | + | chr3.4:84018433-84018452 | None:intergenic | 55.0% | |
| TGGTCATTGTGACTGCAGGC+TGG | - | chr3.4:84020271-84020290 | MS.gene013563:CDS | 55.0% | |
| ! | ACCCCACGCATGAGCATTGT+TGG | + | chr3.4:84020250-84020269 | None:intergenic | 55.0% |
| ! | AGAGTGTGAGAGAGCGTAGG+GGG | - | chr3.4:84017549-84017568 | MS.gene013563:CDS | 55.0% |
| ! | TAGACGGAAAGGTGCGCATC+TGG | - | chr3.4:84018848-84018867 | MS.gene013563:CDS | 55.0% |
| !! | TTGGTCTTGGAGCCCGAAAC+AGG | + | chr3.4:84020168-84020187 | None:intergenic | 55.0% |
| GGCCAGGTTGCAGATCCCTT+TGG | + | chr3.4:84020132-84020151 | None:intergenic | 60.0% | |
| GGGCAGTATCTGGCTACAGG+TGG | - | chr3.4:84018178-84018197 | MS.gene013563:intron | 60.0% | |
| GGTGTGGCAAGTGGTTGAGG+AGG | - | chr3.4:84018219-84018238 | MS.gene013563:intron | 60.0% | |
| GGTTGTTCGGGTGTGGCAAG+TGG | - | chr3.4:84018210-84018229 | MS.gene013563:intron | 60.0% | |
| TCGGGTGTGGCAAGTGGTTG+AGG | - | chr3.4:84018216-84018235 | MS.gene013563:intron | 60.0% | |
| TTGTGACTGCAGGCTGGGAC+GGG | - | chr3.4:84020277-84020296 | MS.gene013563:CDS | 60.0% | |
| AGGAAGCTTCTCCTCGGGCC+AGG | + | chr3.4:84020148-84020167 | None:intergenic | 65.0% | |
| ! | GTGTGAGAGAGCGTAGGGGG+AGG | - | chr3.4:84017552-84017571 | MS.gene013563:CDS | 65.0% |
| GGGATCTGCAACCTGGCCCG+AGG | - | chr3.4:84020134-84020153 | MS.gene013563:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 84017392 | 84020344 | 84017392 | ID=MS.gene013563 |
| chr3.4 | mRNA | 84017392 | 84020344 | 84017392 | ID=MS.gene013563.t1;Parent=MS.gene013563 |
| chr3.4 | exon | 84019244 | 84020344 | 84019244 | ID=MS.gene013563.t1.exon1;Parent=MS.gene013563.t1 |
| chr3.4 | CDS | 84019244 | 84020344 | 84019244 | ID=cds.MS.gene013563.t1;Parent=MS.gene013563.t1 |
| chr3.4 | exon | 84019057 | 84019147 | 84019057 | ID=MS.gene013563.t1.exon2;Parent=MS.gene013563.t1 |
| chr3.4 | CDS | 84019057 | 84019147 | 84019057 | ID=cds.MS.gene013563.t1;Parent=MS.gene013563.t1 |
| chr3.4 | exon | 84018785 | 84018942 | 84018785 | ID=MS.gene013563.t1.exon3;Parent=MS.gene013563.t1 |
| chr3.4 | CDS | 84018785 | 84018942 | 84018785 | ID=cds.MS.gene013563.t1;Parent=MS.gene013563.t1 |
| chr3.4 | exon | 84018643 | 84018694 | 84018643 | ID=MS.gene013563.t1.exon4;Parent=MS.gene013563.t1 |
| chr3.4 | CDS | 84018643 | 84018694 | 84018643 | ID=cds.MS.gene013563.t1;Parent=MS.gene013563.t1 |
| chr3.4 | exon | 84018267 | 84018346 | 84018267 | ID=MS.gene013563.t1.exon5;Parent=MS.gene013563.t1 |
| chr3.4 | CDS | 84018267 | 84018346 | 84018267 | ID=cds.MS.gene013563.t1;Parent=MS.gene013563.t1 |
| chr3.4 | exon | 84018075 | 84018168 | 84018075 | ID=MS.gene013563.t1.exon6;Parent=MS.gene013563.t1 |
| chr3.4 | CDS | 84018075 | 84018168 | 84018075 | ID=cds.MS.gene013563.t1;Parent=MS.gene013563.t1 |
| chr3.4 | exon | 84017392 | 84017933 | 84017392 | ID=MS.gene013563.t1.exon7;Parent=MS.gene013563.t1 |
| chr3.4 | CDS | 84017392 | 84017933 | 84017392 | ID=cds.MS.gene013563.t1;Parent=MS.gene013563.t1 |
| Gene Sequence |
| Protein sequence |
