AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene013873

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene013873.t1 MTR_7g087370 91.207 489 14 1 1 489 1 460 0.0 866
MS.gene013873.t1 MTR_7g087400 89.876 484 49 0 1 484 1 484 0.0 862
MS.gene013873.t1 MTR_6g027200 72.464 483 129 2 6 484 9 491 0.0 712
MS.gene013873.t1 MTR_7g087410 68.583 487 150 2 4 487 3 489 0.0 682
MS.gene013873.t1 MTR_6g027190 69.979 483 137 2 3 484 4 479 0.0 655
MS.gene013873.t1 MTR_7g087410 70.250 400 118 1 89 487 1 400 0.0 585
MS.gene013873.t1 MTR_7g087430 70.101 398 118 1 89 485 1 398 0.0 560
MS.gene013873.t1 MTR_5g032720 51.025 488 231 3 1 480 1 488 6.08e-172 493
MS.gene013873.t1 MTR_3g099700 49.153 472 237 3 12 481 29 499 1.91e-159 462
MS.gene013873.t1 MTR_5g032750 49.247 465 234 2 11 473 17 481 1.68e-158 459
MS.gene013873.t1 MTR_3g099720 48.529 476 238 3 3 472 10 484 3.61e-151 440
MS.gene013873.t1 MTR_1g021740 47.277 459 239 2 18 473 21 479 2.19e-149 436
MS.gene013873.t1 MTR_8g069470 46.070 458 246 1 30 486 50 507 1.20e-147 432
MS.gene013873.t1 MTR_1g100180 46.187 459 247 0 25 483 38 496 2.46e-145 426
MS.gene013873.t1 MTR_2g022980 44.057 488 255 4 4 473 6 493 1.40e-140 413
MS.gene013873.t1 MTR_5g033100 46.608 457 239 2 31 482 57 513 7.35e-139 410
MS.gene013873.t1 MTR_4g048000 46.203 474 243 3 12 473 36 509 1.06e-137 407
MS.gene013873.t1 MTR_2g088400 45.625 480 249 3 12 479 24 503 6.42e-136 402
MS.gene013873.t1 MTR_6g047640 39.746 473 275 3 10 474 5 475 7.67e-116 350
MS.gene013873.t1 MTR_2g088400 44.521 438 231 3 12 437 24 461 2.14e-115 348
MS.gene013873.t1 MTR_6g047610 38.852 453 276 1 22 474 23 474 4.21e-113 343
MS.gene013873.t1 MTR_6g047640 38.055 473 264 4 10 474 5 456 1.74e-110 335
MS.gene013873.t1 MTR_5g090290 41.087 460 264 2 20 472 31 490 6.50e-110 337
MS.gene013873.t1 MTR_6g047590 37.168 452 283 1 22 473 23 473 3.47e-102 314
MS.gene013873.t1 MTR_8g063590 37.996 479 283 4 7 472 21 498 9.89e-101 311
MS.gene013873.t1 MTR_6g081410 35.356 478 303 4 5 478 2 477 3.60e-95 296
MS.gene013873.t1 MTR_6g081780 35.456 471 296 5 5 470 2 469 1.37e-92 290
MS.gene013873.t1 MTR_1g108810 34.783 460 292 4 12 465 14 471 1.68e-91 287
MS.gene013873.t1 MTR_6g081300 34.979 466 297 3 25 485 5 469 8.43e-91 285
MS.gene013873.t1 MTR_7g082810 35.565 478 306 1 11 486 1 478 6.08e-87 275
MS.gene013873.t1 MTR_6g081810 34.490 461 277 3 10 470 8 443 1.34e-86 273
MS.gene013873.t1 MTR_6g066380 35.666 443 278 4 33 470 31 471 4.33e-86 273
MS.gene013873.t1 MTR_8g106670 33.708 445 292 2 30 472 13 456 2.24e-85 271
MS.gene013873.t1 MTR_6g081400 34.136 457 286 6 25 472 10 460 8.86e-85 269
MS.gene013873.t1 MTR_6g081390 33.478 460 297 6 25 478 7 463 4.29e-83 265
MS.gene013873.t1 MTR_2g078930 36.105 457 284 2 13 461 20 476 3.96e-82 263
MS.gene013873.t1 MTR_6g081240 33.409 443 289 4 25 463 5 445 6.52e-82 261
MS.gene013873.t1 MTR_2g079020 36.364 462 280 4 11 461 12 470 1.68e-81 261
MS.gene013873.t1 MTR_5g087930 34.115 469 276 5 17 483 23 460 1.09e-80 258
MS.gene013873.t1 MTR_1g108840 33.264 478 309 4 1 470 8 483 1.57e-80 259
MS.gene013873.t1 MTR_2g078960 37.788 434 268 1 30 461 33 466 1.24e-78 253
MS.gene013873.t1 MTR_6g004220 32.128 470 312 3 18 484 11 476 3.90e-77 249
MS.gene013873.t1 MTR_2g078970 34.879 453 287 2 17 461 12 464 4.32e-76 247
MS.gene013873.t1 MTR_6g004220 32.328 464 309 3 3 463 5 466 1.44e-74 243
MS.gene013873.t1 MTR_1g108990 32.484 471 308 3 6 470 1 467 1.37e-71 235
MS.gene013873.t1 MTR_1g109060 33.758 471 301 3 6 470 1 466 3.06e-71 234
MS.gene013873.t1 MTR_6g081310 33.261 463 275 7 25 470 5 450 6.27e-70 230
MS.gene013873.t1 MTR_1g109060 33.758 471 300 4 6 470 1 465 1.24e-69 230
MS.gene013873.t1 MTR_7g082800 33.671 395 260 1 89 481 1 395 2.96e-68 224
MS.gene013873.t1 MTR_3g111020 28.601 486 313 7 14 481 35 504 1.81e-64 218
MS.gene013873.t1 MTR_5g090280 32.692 416 238 6 89 472 1 406 8.57e-61 205
MS.gene013873.t1 MTR_5g067460 26.349 482 345 3 7 482 32 509 1.98e-56 197
MS.gene013873.t1 MTR_5g010830 27.865 445 311 4 30 468 65 505 1.35e-53 189
MS.gene013873.t1 MTR_2g078990 37.288 295 173 4 174 461 4 293 1.76e-53 183
MS.gene013873.t1 MTR_1g101500 26.509 464 325 4 14 468 48 504 1.35e-49 178
MS.gene013873.t1 MTR_6g043810 25.787 508 332 8 8 483 3 497 1.66e-49 177
MS.gene013873.t1 MTR_6g043810 25.444 507 334 8 1 483 1 487 2.70e-49 176
MS.gene013873.t1 MTR_4g027920 26.247 461 332 3 27 479 153 613 5.36e-49 178
MS.gene013873.t1 MTR_6g004220 29.474 380 265 2 18 394 18 397 3.83e-48 172
MS.gene013873.t1 MTR_0039s0080 26.998 463 324 6 27 483 35 489 4.92e-48 174
MS.gene013873.t1 MTR_6g088805 27.088 491 331 7 4 479 2 480 5.94e-40 150
MS.gene013873.t1 MTR_2g079030 39.487 195 118 0 267 461 319 513 7.00e-39 149
MS.gene013873.t1 MTR_8g102430 27.640 445 274 9 30 459 23 434 4.34e-37 142
MS.gene013873.t1 MTR_2g435930 22.500 480 346 4 18 475 7 482 1.70e-32 130
MS.gene013873.t1 MTR_6g004220 28.344 314 220 3 3 313 5 316 1.28e-31 124
MS.gene013873.t1 MTR_5g011540 26.144 459 316 6 22 467 35 483 2.92e-31 126
MS.gene013873.t1 MTR_4g131290 52.727 55 26 0 102 156 13 67 1.29e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene013873.t1 AT1G33110 64.344 488 170 3 2 485 4 491 0.0 647
MS.gene013873.t1 AT1G33100 62.448 482 180 1 5 485 7 488 0.0 633
MS.gene013873.t1 AT1G33080 60.950 484 185 2 5 484 7 490 0.0 608
MS.gene013873.t1 AT1G33090 61.031 485 185 3 5 485 7 491 0.0 605
MS.gene013873.t1 AT1G33080 62.419 463 170 2 5 463 7 469 0.0 595
MS.gene013873.t1 AT1G33110 65.578 398 133 3 2 395 4 401 0.0 532
MS.gene013873.t1 AT5G65380 50.947 475 230 3 2 474 9 482 1.62e-163 471
MS.gene013873.t1 AT5G44050 49.064 481 239 3 4 480 13 491 1.01e-162 470
MS.gene013873.t1 AT1G47530 46.392 485 253 3 1 479 1 484 5.39e-151 439
MS.gene013873.t1 AT5G10420 47.589 477 245 4 4 477 12 486 5.33e-147 429
MS.gene013873.t1 AT4G00350 46.275 443 238 0 31 473 88 530 3.54e-143 422
MS.gene013873.t1 AT3G26590 47.297 444 233 1 31 473 45 488 1.27e-142 419
MS.gene013873.t1 AT4G25640 46.555 479 250 2 10 482 7 485 1.51e-140 413
MS.gene013873.t1 AT4G25640 46.555 479 250 2 10 482 7 485 5.46e-140 412
MS.gene013873.t1 AT1G12950 46.578 453 241 1 31 482 67 519 3.02e-139 411
MS.gene013873.t1 AT3G03620 44.444 477 263 2 15 489 21 497 1.17e-137 406
MS.gene013873.t1 AT3G03620 44.444 477 263 2 15 489 21 497 1.17e-137 406
MS.gene013873.t1 AT5G38030 45.946 444 239 1 31 473 45 488 4.12e-137 405
MS.gene013873.t1 AT1G61890 44.374 471 251 3 19 483 31 496 8.30e-136 401
MS.gene013873.t1 AT1G11670 43.927 494 256 4 1 473 1 494 9.44e-136 401
MS.gene013873.t1 AT5G17700 42.767 477 269 4 2 475 4 479 3.88e-135 400
MS.gene013873.t1 AT5G17700 42.767 477 269 4 2 475 4 479 3.88e-135 400
MS.gene013873.t1 AT1G23300 44.754 467 247 2 31 486 44 510 1.11e-133 397
MS.gene013873.t1 AT3G21690 46.070 458 245 1 24 479 45 502 2.82e-133 395
MS.gene013873.t1 AT1G61890 44.690 452 244 2 19 464 31 482 5.89e-131 389
MS.gene013873.t1 AT1G47530 48.214 392 202 1 89 479 1 392 1.13e-129 382
MS.gene013873.t1 AT4G25640 47.552 429 219 2 10 432 7 435 7.70e-129 382
MS.gene013873.t1 AT4G21910 41.189 488 262 5 15 480 19 503 4.40e-125 374
MS.gene013873.t1 AT4G21910 41.189 488 262 5 15 480 19 503 4.40e-125 374
MS.gene013873.t1 AT3G26590 47.668 386 201 1 89 473 1 386 4.41e-125 370
MS.gene013873.t1 AT4G21910 42.308 468 261 4 19 480 41 505 5.27e-125 374
MS.gene013873.t1 AT4G21910 42.308 468 261 4 19 480 41 505 5.27e-125 374
MS.gene013873.t1 AT4G21903 44.037 436 237 5 51 483 73 504 6.34e-122 366
MS.gene013873.t1 AT3G59030 40.825 485 270 4 14 483 22 504 1.51e-121 365
MS.gene013873.t1 AT4G21903 44.975 398 213 4 89 483 1 395 4.39e-117 350
MS.gene013873.t1 AT1G61890 43.721 430 236 2 19 442 31 460 6.94e-117 352
MS.gene013873.t1 AT4G21903 43.529 425 235 4 51 472 73 495 1.46e-116 353
MS.gene013873.t1 AT5G17700 42.172 396 225 4 2 394 4 398 2.48e-105 320
MS.gene013873.t1 AT5G52450 36.943 471 283 4 25 487 20 484 1.87e-89 282
MS.gene013873.t1 AT2G34360 35.307 473 288 5 20 485 16 477 2.43e-89 281
MS.gene013873.t1 AT3G59030 39.141 396 225 3 14 394 22 416 4.79e-89 279
MS.gene013873.t1 AT1G73700 36.842 456 284 3 20 472 13 467 3.02e-85 271
MS.gene013873.t1 AT1G71140 33.261 460 297 3 17 470 12 467 8.88e-80 257
MS.gene013873.t1 AT2G34360 32.773 476 262 4 16 485 12 435 3.18e-79 254
MS.gene013873.t1 AT1G15150 32.716 486 307 5 14 482 2 484 5.05e-78 252
MS.gene013873.t1 AT1G66760 33.475 469 299 4 10 472 10 471 1.69e-77 251
MS.gene013873.t1 AT1G15160 32.649 487 303 6 14 482 5 484 7.74e-77 249
MS.gene013873.t1 AT1G66760 33.696 460 292 4 10 463 10 462 6.44e-76 246
MS.gene013873.t1 AT1G15170 33.750 480 303 6 1 470 1 475 1.41e-74 243
MS.gene013873.t1 AT1G66780 34.742 426 274 2 48 470 52 476 5.28e-74 241
MS.gene013873.t1 AT2G04080 33.613 476 288 10 14 470 2 468 1.82e-71 235
MS.gene013873.t1 AT3G23560 32.340 470 307 2 3 461 2 471 6.10e-70 231
MS.gene013873.t1 AT2G04080 33.263 472 287 10 14 466 2 464 7.47e-69 228
MS.gene013873.t1 AT1G64820 30.905 453 299 4 30 474 28 474 1.09e-68 228
MS.gene013873.t1 AT3G23550 33.180 434 288 1 30 461 30 463 3.21e-68 226
MS.gene013873.t1 AT2G04040 33.708 445 287 7 31 470 27 468 3.85e-68 226
MS.gene013873.t1 AT2G04070 31.681 464 306 5 16 470 7 468 4.37e-66 221
MS.gene013873.t1 AT2G04050 32.051 468 306 5 10 470 6 468 3.36e-65 218
MS.gene013873.t1 AT1G15180 33.781 447 284 5 31 470 35 476 3.11e-64 216
MS.gene013873.t1 AT1G15150 34.239 368 237 2 120 482 1 368 4.59e-64 212
MS.gene013873.t1 AT2G04100 32.000 450 300 5 25 470 24 471 1.42e-62 211
MS.gene013873.t1 AT1G15170 34.270 356 229 2 120 470 1 356 2.35e-62 207
MS.gene013873.t1 AT2G04090 32.366 448 289 7 31 470 30 471 7.32e-62 209
MS.gene013873.t1 AT2G04100 32.135 445 296 5 25 465 24 466 2.26e-61 208
MS.gene013873.t1 AT1G66760 33.533 334 220 1 132 463 1 334 8.64e-53 181
MS.gene013873.t1 AT1G66760 32.398 392 250 6 10 394 10 393 5.06e-51 178
MS.gene013873.t1 AT2G38510 25.214 468 333 6 27 485 2 461 4.71e-50 178
MS.gene013873.t1 AT1G58340 25.835 449 323 3 30 472 57 501 1.69e-49 177
MS.gene013873.t1 AT3G23560 31.783 387 253 2 19 394 18 404 3.19e-48 172
MS.gene013873.t1 AT1G71870 24.802 504 338 10 7 482 7 497 2.31e-43 160
MS.gene013873.t1 AT5G19700 26.987 478 319 6 6 468 13 475 1.42e-42 158
MS.gene013873.t1 AT4G29140 25.567 485 340 5 1 475 29 502 4.52e-42 157
MS.gene013873.t1 AT5G52050 25.054 459 295 7 55 486 59 495 5.80e-37 142
MS.gene013873.t1 AT5G49130 24.008 479 340 5 11 472 12 483 6.17e-33 131
MS.gene013873.t1 AT4G23030 24.486 486 347 7 8 482 10 486 4.66e-32 129
MS.gene013873.t1 AT1G15180 31.560 282 184 4 120 394 1 280 1.11e-29 120
MS.gene013873.t1 AT4G22790 25.463 432 298 8 50 467 49 470 3.97e-28 117
MS.gene013873.t1 AT2G04066 40.708 113 67 0 358 470 51 163 1.41e-24 100

Find 101 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTTATTGGATACCAAATT+TGG 0.097933 7.1:-18375046 MS.gene013873:CDS
ATTGGCTCCTATTACCTAAT+TGG 0.170310 7.1:-18372599 MS.gene013873:CDS
ATCAAGCTTTCTTTGTCTTC+TGG 0.221922 7.1:-18374940 MS.gene013873:CDS
TAATTACCTTAACTTGTAAA+TGG 0.223187 7.1:+18372543 None:intergenic
CTTGGTTTCTTTGCTGCAGC+TGG 0.223285 7.1:-18374187 MS.gene013873:CDS
CTCGAAATCGTGTTAATAAA+TGG 0.225423 7.1:-18372081 MS.gene013873:CDS
TGTGATTATCATAAGCATTA+TGG 0.251121 7.1:+18372217 None:intergenic
AAGTTCAAGTTTGGGGTTAA+TGG 0.251747 7.1:-18375090 MS.gene013873:CDS
TGGCCAAGTGTCTCTAAAAT+TGG 0.260735 7.1:+18375297 None:intergenic
AAAACAAGCTGGCCCAAATT+TGG 0.261777 7.1:+18375033 None:intergenic
CAGATTTGCAAATGGTATTC+TGG 0.275264 7.1:-18375876 MS.gene013873:intron
TACCTAATTGGGATTCCTAT+TGG 0.288269 7.1:-18372587 MS.gene013873:CDS
TGTTCTTGCTTTGTGCTTGT+AGG 0.291347 7.1:+18375181 None:intergenic
AGGAATCCCAATTAGGTAAT+AGG 0.307155 7.1:+18372592 None:intergenic
TTAACTGTTAAGTTCAAGTT+TGG 0.307781 7.1:-18375099 MS.gene013873:CDS
TCTTCTCCATTTACAAGTTA+AGG 0.320861 7.1:-18372549 MS.gene013873:intron
TTGAACACTGTTCAACAATA+TGG 0.322650 7.1:+18373719 None:intergenic
GCTTTAGCCACATCTGGGTC+TGG 0.323905 7.1:+18373774 None:intergenic
TGCAATGACATCAATCCTTT+TGG 0.332957 7.1:-18375067 MS.gene013873:CDS
GAGAAACCCTTCCATGTATC+AGG 0.346664 7.1:+18374994 None:intergenic
TGTCTTCTGGAGTTATGTTA+TGG 0.346964 7.1:-18374927 MS.gene013873:intron
GTTTGGATTGGAATGTTGTT+TGG 0.348970 7.1:-18372254 MS.gene013873:CDS
TTGGCTCCTATTACCTAATT+GGG 0.349203 7.1:-18372598 MS.gene013873:CDS
CTTTAGCCACATCTGGGTCT+GGG 0.369998 7.1:+18373775 None:intergenic
CTCCAATAGGAATCCCAATT+AGG 0.373971 7.1:+18372585 None:intergenic
ATAGTTACTCAATCCTTCAT+TGG 0.377348 7.1:-18375953 MS.gene013873:CDS
TAACTGTTAAGTTCAAGTTT+GGG 0.378856 7.1:-18375098 MS.gene013873:CDS
CCAACTGCTTTAGCCACATC+TGG 0.382941 7.1:+18373768 None:intergenic
CTTGATATTTCTATTTCTAA+AGG 0.385741 7.1:-18373820 MS.gene013873:CDS
GCTTATTGGATACCAAATTT+GGG 0.399852 7.1:-18375045 MS.gene013873:CDS
GGCTCTTCTTCCTCCTCTGA+AGG 0.408718 7.1:+18376067 None:intergenic
GACAAAGAAAGCTTGATAAC+AGG 0.408772 7.1:+18374946 None:intergenic
TTACCAAGCATAACTCCAAT+AGG 0.434489 7.1:+18372572 None:intergenic
CCATATGGATAGAGCATCAA+TGG 0.438870 7.1:+18374379 None:intergenic
CCATTGATGCTCTATCCATA+TGG 0.442923 7.1:-18374379 MS.gene013873:intron
GTTAGGGTGGCAAACGAACT+TGG 0.446041 7.1:-18373921 MS.gene013873:CDS
AGTGTTCAACCTGTGCTATC+TGG 0.447005 7.1:-18373705 MS.gene013873:intron
AAGAAGAGCCACTAAGGAAA+AGG 0.447419 7.1:-18376054 MS.gene013873:CDS
CAGGCCCTGCCATGTTCACT+AGG 0.448911 7.1:-18375997 MS.gene013873:CDS
CTGCAGGAAGCATTTCTATA+TGG 0.451306 7.1:-18375254 MS.gene013873:CDS
ACTCTATGTGGACAAGCATA+TGG 0.452338 7.1:-18375420 MS.gene013873:CDS
AGCATTTCTATATGGTCAAT+AGG 0.453706 7.1:-18375246 MS.gene013873:CDS
TTGGTTTCTTTGCTGCAGCT+GGG 0.457086 7.1:-18374186 MS.gene013873:intron
ACAGGAGTTGCTGTTGGAGC+TGG 0.463063 7.1:-18372650 MS.gene013873:intron
GAGTATATCTTCAAAGATCA+TGG 0.475444 7.1:-18375374 MS.gene013873:CDS
GCTCTTCTTCCTCCTCTGAA+GGG 0.476165 7.1:+18376068 None:intergenic
AGCCACTAAGGAAAAGGGTA+TGG 0.482191 7.1:-18376048 MS.gene013873:CDS
CAATCCTTCATTGGTTACAT+TGG 0.484313 7.1:-18375944 MS.gene013873:CDS
ATTCCTATTGGAGTTATGCT+TGG 0.485901 7.1:-18372575 MS.gene013873:CDS
TTGGTATCCAATAAGCCAAA+AGG 0.486894 7.1:+18375052 None:intergenic
GCAAAACAATATTATATGCT+AGG 0.487413 7.1:-18375396 MS.gene013873:CDS
TTGGAAACAATGATAGCCCT+TGG 0.490135 7.1:-18374205 MS.gene013873:CDS
TGAACCAATGTAACCAATGA+AGG 0.490601 7.1:+18375940 None:intergenic
ATGGACTGTAGTGGAGAAAG+AGG 0.491133 7.1:-18372062 MS.gene013873:CDS
TTGAGTACAGGAGTTGCTGT+TGG 0.492111 7.1:-18372656 MS.gene013873:intron
AAAAGTATTGCACATGCTGC+AGG 0.495417 7.1:-18375270 MS.gene013873:CDS
CAGTCTCAACATCAATGGCT+TGG 0.496938 7.1:-18374224 MS.gene013873:CDS
AGGAGGAAGAAGAGCCACTA+AGG 0.500928 7.1:-18376060 MS.gene013873:CDS
AGAAGAGCCACTAAGGAAAA+GGG 0.507893 7.1:-18376053 MS.gene013873:CDS
AAGAAGTTGTGGATAGTAGC+AGG 0.507924 7.1:-18376016 MS.gene013873:CDS
GCTAGGCATGGCAAGTGCAC+TGG 0.508141 7.1:-18375445 MS.gene013873:CDS
AGGAATCAAACAACACATCA+AGG 0.514636 7.1:-18372042 MS.gene013873:CDS
GTCTTAGTCAGATTTGCAAA+TGG 0.517456 7.1:-18375884 MS.gene013873:CDS
TGACAAAATGTCCTGATACA+TGG 0.517890 7.1:-18375005 MS.gene013873:CDS
GTGGCAAACGAACTTGGAGG+AGG 0.519367 7.1:-18373915 MS.gene013873:CDS
AACAGGCCAAAGATCTTTGA+AGG 0.520793 7.1:+18374963 None:intergenic
GAAAACCTAGTGAACATGGC+AGG 0.521175 7.1:+18375992 None:intergenic
GAGTTGCTGTTGGAGCTGGC+TGG 0.529123 7.1:-18372646 MS.gene013873:CDS
AACTGTTAAGTTCAAGTTTG+GGG 0.540817 7.1:-18375097 MS.gene013873:CDS
GATTCTTCTAACAGGAAACA+TGG 0.540823 7.1:-18374417 MS.gene013873:CDS
TAATCACATTTAAAACTGAC+TGG 0.547767 7.1:-18372202 MS.gene013873:CDS
GGGAAGAAAGCAAGAAGTTG+TGG 0.554532 7.1:-18376027 MS.gene013873:CDS
TTTAGCCACATCTGGGTCTG+GGG 0.562532 7.1:+18373776 None:intergenic
TTGAAAATTATAGCTAGGCA+TGG 0.567315 7.1:-18375457 MS.gene013873:intron
CAACTGCTTTAGCCACATCT+GGG 0.576158 7.1:+18373769 None:intergenic
TAAAACTGACTGGCACAAGC+AGG 0.578316 7.1:-18372192 MS.gene013873:intron
CCAGATGTGGCTAAAGCAGT+TGG 0.586151 7.1:-18373768 MS.gene013873:CDS
AAAATGTCCTGATACATGGA+AGG 0.587310 7.1:-18375001 MS.gene013873:CDS
TGTTGAAAACCTAGTGAACA+TGG 0.590541 7.1:+18375988 None:intergenic
GCAGCATCAAAACCCTTCAG+AGG 0.592540 7.1:-18376080 MS.gene013873:CDS
ATTTATTTACCAGATAGCAC+AGG 0.592647 7.1:+18373696 None:intergenic
GCCACTAAGGAAAAGGGTAT+GGG 0.595578 7.1:-18376047 MS.gene013873:CDS
GTTGCAGCATATGTAAACAT+TGG 0.596329 7.1:-18372617 MS.gene013873:CDS
TGTTAATAAATGGACTGTAG+TGG 0.599601 7.1:-18372071 MS.gene013873:CDS
TGGCAAACGAACTTGGAGGA+GGG 0.602419 7.1:-18373914 MS.gene013873:CDS
TGACTAAGACAGTCATAACA+AGG 0.606795 7.1:+18375897 None:intergenic
GCATCAAAACCCTTCAGAGG+AGG 0.620658 7.1:-18376077 MS.gene013873:CDS
CAGCTGCAGCAAAGAAACCA+AGG 0.624175 7.1:+18374188 None:intergenic
GGAATCAAACAACACATCAA+GGG 0.625829 7.1:-18372041 MS.gene013873:CDS
AAAACCTAGTGAACATGGCA+GGG 0.631883 7.1:+18375993 None:intergenic
AAATGTCCTGATACATGGAA+GGG 0.649772 7.1:-18375000 MS.gene013873:CDS
TGTAAGCACTGTTATCACAA+TGG 0.649952 7.1:+18373869 None:intergenic
AAGTGTCTCTAAAATTGGAG+AGG 0.651520 7.1:+18375302 None:intergenic
TTGAAATTGAAACTGCTGCA+AGG 0.660479 7.1:+18375145 None:intergenic
TTTCACCCCAGACCCAGATG+TGG 0.660790 7.1:-18373781 MS.gene013873:CDS
AGCTGCAGCAAAGAAACCAA+GGG 0.662442 7.1:+18374189 None:intergenic
AGTGCACTGGAAACTCTATG+TGG 0.676594 7.1:-18375432 MS.gene013873:CDS
GACTAAGACAGTCATAACAA+GGG 0.688593 7.1:+18375898 None:intergenic
ACTTGGAGGAGGGAATTCGA+AGG 0.691261 7.1:-18373904 MS.gene013873:CDS
AATATGGATATTGACAACAA+AGG 0.702139 7.1:+18373735 None:intergenic
AGGGTGGCAAACGAACTTGG+AGG 0.716111 7.1:-18373918 MS.gene013873:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTTAAAAAAATATAA+AGG + chr7.1:18374778-18374797 None:intergenic 0.0%
!! AAGTAAAAAAAAAAACATAT+AGG + chr7.1:18373345-18373364 None:intergenic 10.0%
!! TACATATATCTTATATATAA+AGG - chr7.1:18375302-18375321 MS.gene013873:CDS 10.0%
!!! TTTTTTTTTAGAGAAATAAT+TGG - chr7.1:18373995-18374014 MS.gene013873:intron 10.0%
!! AAAAAATAATAATAAAGTGG+TGG + chr7.1:18375050-18375069 None:intergenic 15.0%
!! ACCAAAAAATAATAATAAAG+TGG + chr7.1:18375053-18375072 None:intergenic 15.0%
!! AGTTTAAATATTAAAAAGCA+TGG + chr7.1:18373862-18373881 None:intergenic 15.0%
!! TAGTGCAATAAAAAATATAT+TGG + chr7.1:18375698-18375717 None:intergenic 15.0%
!! TGAAGAGTAAAATATTAATT+AGG - chr7.1:18375661-18375680 MS.gene013873:intron 15.0%
!! TTAATTAAAAAAAAGATGGT+GGG - chr7.1:18374878-18374897 MS.gene013873:intron 15.0%
!! TTATAGTTTACATTGAAATT+TGG - chr7.1:18372547-18372566 MS.gene013873:intron 15.0%
!!! AAAACTAAGCAAATTTTTTT+AGG + chr7.1:18373472-18373491 None:intergenic 15.0%
!!! AAACTAAGCAAATTTTTTTA+GGG + chr7.1:18373471-18373490 None:intergenic 15.0%
!!! ACCACTTTATTATTATTTTT+TGG - chr7.1:18375049-18375068 MS.gene013873:CDS 15.0%
!!! TAAATATTGTTTTTGTTCAT+TGG - chr7.1:18374464-18374483 MS.gene013873:intron 15.0%
!!! TTTAATTTAGTAAACTATGT+GGG - chr7.1:18375724-18375743 MS.gene013873:intron 15.0%
!!! TTTTAATTTAGTAAACTATG+TGG - chr7.1:18375723-18375742 MS.gene013873:intron 15.0%
!!! TTTTAGTCTTATAATATTAG+AGG - chr7.1:18374514-18374533 MS.gene013873:intron 15.0%
!!! TTTTATTGCAACAATATTTT+CGG + chr7.1:18373638-18373657 None:intergenic 15.0%
!!! TTTTGCTTTGTAATTAATTT+TGG - chr7.1:18373280-18373299 MS.gene013873:intron 15.0%
!! AATCTTAAAGATACTATTAG+AGG - chr7.1:18374834-18374853 MS.gene013873:intron 20.0%
!! AGTTATATCTTGAATGTATT+TGG - chr7.1:18372468-18372487 MS.gene013873:intron 20.0%
!! ATTGTCCAATAAATATCAAA+TGG + chr7.1:18372574-18372593 None:intergenic 20.0%
!! CATCTCATTTATGATATTAA+CGG + chr7.1:18375419-18375438 None:intergenic 20.0%
!! CTTAATTAAAAAAAAGATGG+TGG - chr7.1:18374877-18374896 MS.gene013873:intron 20.0%
!! GAATACCTAATTAGATTATT+TGG - chr7.1:18375440-18375459 MS.gene013873:CDS 20.0%
!! GAGATAAAACAAAATAATGT+TGG - chr7.1:18374626-18374645 MS.gene013873:intron 20.0%
!! GGACTTAATTAAAAAAAAGA+TGG - chr7.1:18374874-18374893 MS.gene013873:intron 20.0%
!! GTTATATCTTGAATGTATTT+GGG - chr7.1:18372469-18372488 MS.gene013873:intron 20.0%
!! TAATTAAAAAAAAGATGGTG+GGG - chr7.1:18374879-18374898 MS.gene013873:intron 20.0%
!! TAATTTCCCTTTAAATTATG+TGG + chr7.1:18375799-18375818 None:intergenic 20.0%
!! TTATATCTTGAATGTATTTG+GGG - chr7.1:18372470-18372489 MS.gene013873:intron 20.0%
!! TTTAATCAAGATTTGATATG+AGG + chr7.1:18375827-18375846 None:intergenic 20.0%
!!! AAATTACATATGGATTTTAC+AGG - chr7.1:18376029-18376048 MS.gene013873:CDS 20.0%
!!! AGTATCTTTAAGATTTTAGA+TGG + chr7.1:18374829-18374848 None:intergenic 20.0%
!!! ATATTGTTGGTTCTAAAATT+AGG - chr7.1:18375850-18375869 MS.gene013873:intron 20.0%
!!! ATCATTAGTTTTATATTGCA+TGG - chr7.1:18373605-18373624 MS.gene013873:intron 20.0%
!!! CTTGATATTTCTATTTCTAA+AGG - chr7.1:18374322-18374341 MS.gene013873:intron 20.0%
!!! GATCCTATATATTTTCTATT+TGG + chr7.1:18375777-18375796 None:intergenic 20.0%
!!! TAATTACCTTAACTTGTAAA+TGG + chr7.1:18375602-18375621 None:intergenic 20.0%
!!! TAGTATTTTTTTCAGTGTTA+GGG - chr7.1:18374205-18374224 MS.gene013873:CDS 20.0%
!!! TTAGTATTTTTTTCAGTGTT+AGG - chr7.1:18374204-18374223 MS.gene013873:CDS 20.0%
! AAAAAATTGGGACTCAATTA+TGG + chr7.1:18373430-18373449 None:intergenic 25.0%
! AAATGAAATGTAGTACCATA+TGG + chr7.1:18373781-18373800 None:intergenic 25.0%
! AATATGGATATTGACAACAA+AGG + chr7.1:18374410-18374429 None:intergenic 25.0%
! AATGATACAACTACACTATA+AGG + chr7.1:18373591-18373610 None:intergenic 25.0%
! AATTAAATTTATCCTCCCAA+TGG - chr7.1:18374793-18374812 MS.gene013873:intron 25.0%
! ACTTATTTCCAACCTTTATT+AGG - chr7.1:18375270-18375289 MS.gene013873:CDS 25.0%
! AGAAACGAATATCAATTTCA+CGG + chr7.1:18376007-18376026 None:intergenic 25.0%
! AGTCAATACATTTATAGTCA+AGG - chr7.1:18372291-18372310 MS.gene013873:intron 25.0%
! ATAATTATGTTGTTGAGTAC+AGG - chr7.1:18375474-18375493 MS.gene013873:intron 25.0%
! ATAGGATCCACATAATTTAA+AGG - chr7.1:18375789-18375808 MS.gene013873:intron 25.0%
! ATTGAGCTAACATAAATCTA+TGG - chr7.1:18373663-18373682 MS.gene013873:intron 25.0%
! CAACAACATAATTATTTAGC+AGG + chr7.1:18375469-18375488 None:intergenic 25.0%
! CATAAATACATTTGTAGTCA+CGG - chr7.1:18372419-18372438 MS.gene013873:intron 25.0%
! CCACCAAATAGAAAATATAT+AGG - chr7.1:18375771-18375790 MS.gene013873:intron 25.0%
! CTTGATTAAAGAGATATTGT+TGG - chr7.1:18375837-18375856 MS.gene013873:intron 25.0%
! GACTTCGTAATTTCAAAAAA+CGG + chr7.1:18374091-18374110 None:intergenic 25.0%
! GCAAAACAATATTATATGCT+AGG - chr7.1:18372746-18372765 MS.gene013873:intron 25.0%
! GCAAATTGAAAATTATAGCT+AGG - chr7.1:18372680-18372699 MS.gene013873:intron 25.0%
! GGTAACCAAATAATCTAATT+AGG + chr7.1:18375448-18375467 None:intergenic 25.0%
! GTAACTCATATACCTAATAA+AGG + chr7.1:18375285-18375304 None:intergenic 25.0%
! TAGGATCCACATAATTTAAA+GGG - chr7.1:18375790-18375809 MS.gene013873:intron 25.0%
! TATTGGAAGAAGAAAAATTG+AGG + chr7.1:18372810-18372829 None:intergenic 25.0%
! TCAACTGACAATATCAATAT+TGG + chr7.1:18375164-18375183 None:intergenic 25.0%
! TGCTTCAAATTTAGTATCAA+GGG - chr7.1:18373827-18373846 MS.gene013873:CDS 25.0%
! TGTAAACAATATCCGAATAA+AGG - chr7.1:18375184-18375203 MS.gene013873:CDS 25.0%
! TGTGATTATCATAAGCATTA+TGG + chr7.1:18375928-18375947 None:intergenic 25.0%
! TTAGTTAAGACCTAAATTGT+AGG - chr7.1:18373524-18373543 MS.gene013873:intron 25.0%
! TTATTTAGACACACTATAGT+CGG - chr7.1:18374541-18374560 MS.gene013873:intron 25.0%
! TTGCTTCAAATTTAGTATCA+AGG - chr7.1:18373826-18373845 MS.gene013873:CDS 25.0%
! TTGGACCATTTGATATTTAT+TGG - chr7.1:18372566-18372585 MS.gene013873:CDS 25.0%
! TTTACTTCATAGTTACCTAT+GGG - chr7.1:18373358-18373377 MS.gene013873:intron 25.0%
!! AATTAAAAAAAAGATGGTGG+GGG - chr7.1:18374880-18374899 MS.gene013873:intron 25.0%
!! CCTATATATTTTCTATTTGG+TGG + chr7.1:18375774-18375793 None:intergenic 25.0%
!! GTAGATATATTTTCAAAGTG+AGG + chr7.1:18375752-18375771 None:intergenic 25.0%
!! TAACTGTTAAGTTCAAGTTT+GGG - chr7.1:18373044-18373063 MS.gene013873:intron 25.0%
!! TAAGATTTTAGATGGTGATA+TGG + chr7.1:18374821-18374840 None:intergenic 25.0%
!! TAATCACATTTAAAACTGAC+TGG - chr7.1:18375940-18375959 MS.gene013873:CDS 25.0%
!! TAGGTTGGAAATCATAATAA+TGG + chr7.1:18375223-18375242 None:intergenic 25.0%
!! TTAACTGTTAAGTTCAAGTT+TGG - chr7.1:18373043-18373062 MS.gene013873:intron 25.0%
!! TTTTACTTCATAGTTACCTA+TGG - chr7.1:18373357-18373376 MS.gene013873:intron 25.0%
!!! CAAATTTTTTTAGGGTCTAA+TGG + chr7.1:18373463-18373482 None:intergenic 25.0%
!!! CAATACATGTTTTTATGTCA+TGG - chr7.1:18373017-18373036 MS.gene013873:intron 25.0%
!!! TAGTTTTTTTCTTTTTCCGA+AGG - chr7.1:18375345-18375364 MS.gene013873:CDS 25.0%
!!! TTTTGTTTTATCTCTCTAAG+TGG + chr7.1:18374620-18374639 None:intergenic 25.0%
AAATACAACTTGAATGTGTG+TGG - chr7.1:18374586-18374605 MS.gene013873:intron 30.0%
AACTTGAAACCTTACAATTG+TGG + chr7.1:18375114-18375133 None:intergenic 30.0%
ACCTAACAATATGTGAATGA+AGG - chr7.1:18375238-18375257 MS.gene013873:CDS 30.0%
ACCTTCATTCACATATTGTT+AGG + chr7.1:18375242-18375261 None:intergenic 30.0%
ACTACACTATAAGGTAACAT+AGG + chr7.1:18373582-18373601 None:intergenic 30.0%
ACTTGAAACCTTACAATTGT+GGG + chr7.1:18375113-18375132 None:intergenic 30.0%
AGCATTTCTATATGGTCAAT+AGG - chr7.1:18372896-18372915 MS.gene013873:intron 30.0%
ATAGTTACTCAATCCTTCAT+TGG - chr7.1:18372189-18372208 MS.gene013873:intron 30.0%
ATTTATTTACCAGATAGCAC+AGG + chr7.1:18374449-18374468 None:intergenic 30.0%
CAATATCAATATTGGTAGGT+CGG + chr7.1:18375156-18375175 None:intergenic 30.0%
CCATATTTCAAGACTGTAAA+AGG + chr7.1:18373691-18373710 None:intergenic 30.0%
CTCATATACCTAATAAAGGT+TGG + chr7.1:18375281-18375300 None:intergenic 30.0%
CTCGAAATCGTGTTAATAAA+TGG - chr7.1:18376061-18376080 MS.gene013873:CDS 30.0%
CTGACAATATCAATATTGGT+AGG + chr7.1:18375160-18375179 None:intergenic 30.0%
GAGTATATCTTCAAAGATCA+TGG - chr7.1:18372768-18372787 MS.gene013873:intron 30.0%
GCACATATAAATATGCATTG+AGG - chr7.1:18372498-18372517 MS.gene013873:intron 30.0%
GCTTATTGGATACCAAATTT+GGG - chr7.1:18373097-18373116 MS.gene013873:intron 30.0%
GGAGAGGTAAAAATGTATAT+TGG + chr7.1:18372827-18372846 None:intergenic 30.0%
TCATTCACATATTGTTAGGT+TGG + chr7.1:18375238-18375257 None:intergenic 30.0%
TCTTCTCCATTTACAAGTTA+AGG - chr7.1:18375593-18375612 MS.gene013873:intron 30.0%
TTGAAAATTATAGCTAGGCA+TGG - chr7.1:18372685-18372704 MS.gene013873:intron 30.0%
TTGAACACTGTTCAACAATA+TGG + chr7.1:18374426-18374445 None:intergenic 30.0%
TTGTCATGATAAAAACAAGC+TGG + chr7.1:18373123-18373142 None:intergenic 30.0%
! AACTGTTAAGTTCAAGTTTG+GGG - chr7.1:18373045-18373064 MS.gene013873:intron 30.0%
! CATGTGCAATACTTTTATCT+TGG + chr7.1:18372868-18372887 None:intergenic 30.0%
! CCTTTTACAGTCTTGAAATA+TGG - chr7.1:18373688-18373707 MS.gene013873:intron 30.0%
! TTCACTAGGTTTTCAACATT+TGG - chr7.1:18372159-18372178 MS.gene013873:intron 30.0%
! TTTTTGCCTTCAAAGATCTT+TGG - chr7.1:18373173-18373192 MS.gene013873:intron 30.0%
!! ATTAAAAAAAAGATGGTGGG+GGG - chr7.1:18374881-18374900 MS.gene013873:intron 30.0%
!! GTGCTTACATCATTTTTCAT+AGG - chr7.1:18374287-18374306 MS.gene013873:intron 30.0%
!! TAAACATGTAGTGTTGATGT+CGG - chr7.1:18375371-18375390 MS.gene013873:CDS 30.0%
!! TGTTAATAAATGGACTGTAG+TGG - chr7.1:18376071-18376090 MS.gene013873:CDS 30.0%
!!! AAAATTAGGTCACTTTTGCA+GGG - chr7.1:18375864-18375883 MS.gene013873:intron 30.0%
!!! ACAGTTTTGATTCTTCTAAC+AGG - chr7.1:18373717-18373736 MS.gene013873:CDS 30.0%
!!! AGTCCCAATTTTTTTTCTAG+GGG - chr7.1:18373436-18373455 MS.gene013873:intron 30.0%
!!! GAGTCCCAATTTTTTTTCTA+GGG - chr7.1:18373435-18373454 MS.gene013873:intron 30.0%
!!! GTACTAATTTTTTTGAGCCT+AGG + chr7.1:18373408-18373427 None:intergenic 30.0%
!!! TAAAATTAGGTCACTTTTGC+AGG - chr7.1:18375863-18375882 MS.gene013873:intron 30.0%
!!! TAATTTTTTTGAGCCTAGGA+CGG + chr7.1:18373404-18373423 None:intergenic 30.0%
!!! TATTTTTTTCAGTGTTAGGG+TGG - chr7.1:18374208-18374227 MS.gene013873:CDS 30.0%
!!! TGAGTCCCAATTTTTTTTCT+AGG - chr7.1:18373434-18373453 MS.gene013873:intron 30.0%
AAAATGTCCTGATACATGGA+AGG - chr7.1:18373141-18373160 MS.gene013873:intron 35.0%
AAATGTCCTGATACATGGAA+GGG - chr7.1:18373142-18373161 MS.gene013873:intron 35.0%
AATTTACGCCCACAATTGTA+AGG - chr7.1:18375102-18375121 MS.gene013873:CDS 35.0%
AGGAATCAAACAACACATCA+AGG - chr7.1:18376100-18376119 MS.gene013873:CDS 35.0%
AGGAATCCCAATTAGGTAAT+AGG + chr7.1:18375553-18375572 None:intergenic 35.0%
ATCAAGCTTTCTTTGTCTTC+TGG - chr7.1:18373202-18373221 MS.gene013873:intron 35.0%
ATTCCTATTGGAGTTATGCT+TGG - chr7.1:18375567-18375586 MS.gene013873:intron 35.0%
CACTACATGTTTATGTCCTT+CGG + chr7.1:18375364-18375383 None:intergenic 35.0%
CAGATTTGCAAATGGTATTC+TGG - chr7.1:18372266-18372285 MS.gene013873:intron 35.0%
CTAAATTGTAGGTTTGCCAT+AGG - chr7.1:18373535-18373554 MS.gene013873:intron 35.0%
CTATAGTATAACTGTGACTG+AGG + chr7.1:18372376-18372395 None:intergenic 35.0%
CTATGGCAAACCTACAATTT+AGG + chr7.1:18373537-18373556 None:intergenic 35.0%
GACTAAGACAGTCATAACAA+GGG + chr7.1:18372247-18372266 None:intergenic 35.0%
GATTCTTCTAACAGGAAACA+TGG - chr7.1:18373725-18373744 MS.gene013873:CDS 35.0%
GGAATCAAACAACACATCAA+GGG - chr7.1:18376101-18376120 MS.gene013873:CDS 35.0%
GGACCCCTAGAAAAAAAATT+GGG + chr7.1:18373442-18373461 None:intergenic 35.0%
GGCTTATTGGATACCAAATT+TGG - chr7.1:18373096-18373115 MS.gene013873:intron 35.0%
GTATTTATGTTTGCGCATCA+CGG + chr7.1:18372408-18372427 None:intergenic 35.0%
GTCTTAGTCAGATTTGCAAA+TGG - chr7.1:18372258-18372277 MS.gene013873:CDS 35.0%
GTTGCAGCATATGTAAACAT+TGG - chr7.1:18375525-18375544 MS.gene013873:intron 35.0%
TACCTAATTGGGATTCCTAT+TGG - chr7.1:18375555-18375574 MS.gene013873:intron 35.0%
TATCCGAATAAAGGATGAGT+TGG - chr7.1:18375193-18375212 MS.gene013873:CDS 35.0%
TGAACCAATGTAACCAATGA+AGG + chr7.1:18372205-18372224 None:intergenic 35.0%
TGACAAAATGTCCTGATACA+TGG - chr7.1:18373137-18373156 MS.gene013873:intron 35.0%
TGACTAAGACAGTCATAACA+AGG + chr7.1:18372248-18372267 None:intergenic 35.0%
TGGACCCCTAGAAAAAAAAT+TGG + chr7.1:18373443-18373462 None:intergenic 35.0%
TGTCCAACTCATCCTTTATT+CGG + chr7.1:18375199-18375218 None:intergenic 35.0%
TGTTGAAAACCTAGTGAACA+TGG + chr7.1:18372157-18372176 None:intergenic 35.0%
TTACCAAGCATAACTCCAAT+AGG + chr7.1:18375573-18375592 None:intergenic 35.0%
TTGAAATTGAAACTGCTGCA+AGG + chr7.1:18373000-18373019 None:intergenic 35.0%
TTGGCTCCTATTACCTAATT+GGG - chr7.1:18375544-18375563 MS.gene013873:intron 35.0%
TTGGTATCCAATAAGCCAAA+AGG + chr7.1:18373093-18373112 None:intergenic 35.0%
! AAGTTCAAGTTTGGGGTTAA+TGG - chr7.1:18373052-18373071 MS.gene013873:intron 35.0%
! ATTGGCTCCTATTACCTAAT+TGG - chr7.1:18375543-18375562 MS.gene013873:intron 35.0%
! CAATCCTTCATTGGTTACAT+TGG - chr7.1:18372198-18372217 MS.gene013873:CDS 35.0%
! GACAAAGAAAGCTTGATAAC+AGG + chr7.1:18373199-18373218 None:intergenic 35.0%
! GTTTGGATTGGAATGTTGTT+TGG - chr7.1:18375888-18375907 MS.gene013873:CDS 35.0%
! TAGTCAACACAAAAGCACAA+CGG + chr7.1:18375017-18375036 None:intergenic 35.0%
! TGCAATGACATCAATCCTTT+TGG - chr7.1:18373075-18373094 MS.gene013873:intron 35.0%
! TGTAAGCACTGTTATCACAA+TGG + chr7.1:18374276-18374295 None:intergenic 35.0%
! TTTTGCAGTCTCAACATCAA+TGG - chr7.1:18373913-18373932 MS.gene013873:CDS 35.0%
!! AAACATGTAGTGTTGATGTC+GGG - chr7.1:18375372-18375391 MS.gene013873:CDS 35.0%
!! AAGTGTCTCTAAAATTGGAG+AGG + chr7.1:18372843-18372862 None:intergenic 35.0%
!! TCTCCAATTTTAGAGACACT+TGG - chr7.1:18372842-18372861 MS.gene013873:intron 35.0%
!! TGTCTTCTGGAGTTATGTTA+TGG - chr7.1:18373215-18373234 MS.gene013873:intron 35.0%
!!! CATCAATCCTTTTGGCTTAT+TGG - chr7.1:18373083-18373102 MS.gene013873:intron 35.0%
AAAACAAGCTGGCCCAAATT+TGG + chr7.1:18373112-18373131 None:intergenic 40.0%
AAAACCTAGTGAACATGGCA+GGG + chr7.1:18372152-18372171 None:intergenic 40.0%
AACAGGCCAAAGATCTTTGA+AGG + chr7.1:18373182-18373201 None:intergenic 40.0%
AACTTGAATGTGTGTGGTGT+TGG - chr7.1:18374592-18374611 MS.gene013873:intron 40.0%
AAGAAGAGCCACTAAGGAAA+AGG - chr7.1:18372088-18372107 MS.gene013873:CDS 40.0%
AAGAAGTTGTGGATAGTAGC+AGG - chr7.1:18372126-18372145 MS.gene013873:intron 40.0%
ACTCTATGTGGACAAGCATA+TGG - chr7.1:18372722-18372741 MS.gene013873:intron 40.0%
ACTCTTCTTAACGCACATCA+TGG - chr7.1:18374113-18374132 MS.gene013873:intron 40.0%
AGAAGAGCCACTAAGGAAAA+GGG - chr7.1:18372089-18372108 MS.gene013873:CDS 40.0%
AGATGGTGATATGGATCCAT+TGG + chr7.1:18374812-18374831 None:intergenic 40.0%
CCATTGATGCTCTATCCATA+TGG - chr7.1:18373763-18373782 MS.gene013873:CDS 40.0%
CTCCAATAGGAATCCCAATT+AGG + chr7.1:18375560-18375579 None:intergenic 40.0%
GAGGTGTATGTGAAAGATTG+AGG - chr7.1:18374853-18374872 MS.gene013873:intron 40.0%
GATGGTGATATGGATCCATT+GGG + chr7.1:18374811-18374830 None:intergenic 40.0%
TGTTCTTGCTTTGTGCTTGT+AGG + chr7.1:18372964-18372983 None:intergenic 40.0%
TTGGAAACAATGATAGCCCT+TGG - chr7.1:18373937-18373956 MS.gene013873:intron 40.0%
! CCATATGGATAGAGCATCAA+TGG + chr7.1:18373766-18373785 None:intergenic 40.0%
!! AAAAGTATTGCACATGCTGC+AGG - chr7.1:18372872-18372891 MS.gene013873:intron 40.0%
!! AAGGGTTTTGATGCTGCAAA+AGG + chr7.1:18372059-18372078 None:intergenic 40.0%
!! CTGCAGGAAGCATTTCTATA+TGG - chr7.1:18372888-18372907 MS.gene013873:intron 40.0%
!! TGGCCAAGTGTCTCTAAAAT+TGG + chr7.1:18372848-18372867 None:intergenic 40.0%
!!! ATAGGCCGTTTCTGAGATTT+TGG + chr7.1:18373564-18373583 None:intergenic 40.0%
AAACGCACTGAACTCCTTCA+TGG - chr7.1:18374956-18374975 MS.gene013873:CDS 45.0%
AACGCACTGAACTCCTTCAT+GGG - chr7.1:18374957-18374976 MS.gene013873:CDS 45.0%
AGCCACTAAGGAAAAGGGTA+TGG - chr7.1:18372094-18372113 MS.gene013873:CDS 45.0%
AGCTGCAGCAAAGAAACCAA+GGG + chr7.1:18373956-18373975 None:intergenic 45.0%
AGGAGCAAAATGTGCATGTG+AGG + chr7.1:18374758-18374777 None:intergenic 45.0%
AGTGCACTGGAAACTCTATG+TGG - chr7.1:18372710-18372729 MS.gene013873:intron 45.0%
AGTGTTCAACCTGTGCTATC+TGG - chr7.1:18374437-18374456 MS.gene013873:CDS 45.0%
CAACTGCTTTAGCCACATCT+GGG + chr7.1:18374376-18374395 None:intergenic 45.0%
CAGTCTCAACATCAATGGCT+TGG - chr7.1:18373918-18373937 MS.gene013873:CDS 45.0%
GAAAACCTAGTGAACATGGC+AGG + chr7.1:18372153-18372172 None:intergenic 45.0%
GAGAAACCCTTCCATGTATC+AGG + chr7.1:18373151-18373170 None:intergenic 45.0%
GGCCACCAAAATCTCAGAAA+CGG - chr7.1:18373556-18373575 MS.gene013873:intron 45.0%
GGGAAGAAAGCAAGAAGTTG+TGG - chr7.1:18372115-18372134 MS.gene013873:intron 45.0%
GGGTCAATGGCTATCAACAT+TGG - chr7.1:18374901-18374920 MS.gene013873:intron 45.0%
TAAAACTGACTGGCACAAGC+AGG - chr7.1:18375950-18375969 MS.gene013873:CDS 45.0%
TTACCTATGGGCCGTATTTG+AGG - chr7.1:18373370-18373389 MS.gene013873:intron 45.0%
TTGAGTACAGGAGTTGCTGT+TGG - chr7.1:18375486-18375505 MS.gene013873:intron 45.0%
TTGGTTTCTTTGCTGCAGCT+GGG - chr7.1:18373956-18373975 MS.gene013873:intron 45.0%
! ATGGACTGTAGTGGAGAAAG+AGG - chr7.1:18376080-18376099 MS.gene013873:CDS 45.0%
! GCCACTAAGGAAAAGGGTAT+GGG - chr7.1:18372095-18372114 MS.gene013873:intron 45.0%
! TATGGGCCGTATTTGAGGTA+GGG - chr7.1:18373375-18373394 MS.gene013873:intron 45.0%
! TCCCATACCCTTTTCCTTAG+TGG + chr7.1:18372099-18372118 None:intergenic 45.0%
!! CTTTTGCAGGGTGTTTGGAT+TGG - chr7.1:18375876-18375895 MS.gene013873:intron 45.0%
!! TCTGAGATTTTGGTGGCCTA+TGG + chr7.1:18373554-18373573 None:intergenic 45.0%
AACTGTGACTGAGGTCGCAT+CGG + chr7.1:18372367-18372386 None:intergenic 50.0%
ACTTGGAGGAGGGAATTCGA+AGG - chr7.1:18374238-18374257 MS.gene013873:intron 50.0%
AGGAGGAAGAAGAGCCACTA+AGG - chr7.1:18372082-18372101 MS.gene013873:CDS 50.0%
CAGCTGCAGCAAAGAAACCA+AGG + chr7.1:18373957-18373976 None:intergenic 50.0%
CCAACTGCTTTAGCCACATC+TGG + chr7.1:18374377-18374396 None:intergenic 50.0%
CCAGATGTGGCTAAAGCAGT+TGG - chr7.1:18374374-18374393 MS.gene013873:intron 50.0%
CTACCTCAAATACGGCCCAT+AGG + chr7.1:18373376-18373395 None:intergenic 50.0%
CTTGGTTTCTTTGCTGCAGC+TGG - chr7.1:18373955-18373974 MS.gene013873:intron 50.0%
CTTTAGCCACATCTGGGTCT+GGG + chr7.1:18374370-18374389 None:intergenic 50.0%
GCAGCATCAAAACCCTTCAG+AGG - chr7.1:18372062-18372081 MS.gene013873:CDS 50.0%
GCATCAAAACCCTTCAGAGG+AGG - chr7.1:18372065-18372084 MS.gene013873:CDS 50.0%
GCTCTTCTTCCTCCTCTGAA+GGG + chr7.1:18372077-18372096 None:intergenic 50.0%
GGTGATATGGATCCATTGGG+AGG + chr7.1:18374808-18374827 None:intergenic 50.0%
GTAGGTCGGACATCTTCGTT+CGG + chr7.1:18375142-18375161 None:intergenic 50.0%
GTTAGGGTGGCAAACGAACT+TGG - chr7.1:18374221-18374240 MS.gene013873:CDS 50.0%
TGGCAAACGAACTTGGAGGA+GGG - chr7.1:18374228-18374247 MS.gene013873:intron 50.0%
TTTAGCCACATCTGGGTCTG+GGG + chr7.1:18374369-18374388 None:intergenic 50.0%
! CTATGGGCCGTATTTGAGGT+AGG - chr7.1:18373374-18373393 MS.gene013873:intron 50.0%
!! AAAAGATGGTGGGGGGTCAA+TGG - chr7.1:18374888-18374907 MS.gene013873:intron 50.0%
!!! GGCCGTTTCTGAGATTTTGG+TGG + chr7.1:18373561-18373580 None:intergenic 50.0%
!!! GGTCACTTTTGCAGGGTGTT+TGG - chr7.1:18375871-18375890 MS.gene013873:intron 50.0%
AGGGTGGCAAACGAACTTGG+AGG - chr7.1:18374224-18374243 MS.gene013873:CDS 55.0%
AGTCTGCAACGGTGCTCTAG+TGG + chr7.1:18374983-18375002 None:intergenic 55.0%
CCAACGACAGCAGTCTGCAA+CGG + chr7.1:18374994-18375013 None:intergenic 55.0%
CGGTCGCCCTACCTCAAATA+CGG + chr7.1:18373384-18373403 None:intergenic 55.0%
GACTCCACAGCAGCAGTCAA+TGG + chr7.1:18374931-18374950 None:intergenic 55.0%
GCTTTAGCCACATCTGGGTC+TGG + chr7.1:18374371-18374390 None:intergenic 55.0%
GGCTCTTCTTCCTCCTCTGA+AGG + chr7.1:18372078-18372097 None:intergenic 55.0%
GTGGCAAACGAACTTGGAGG+AGG - chr7.1:18374227-18374246 MS.gene013873:intron 55.0%
TTTCACCCCAGACCCAGATG+TGG - chr7.1:18374361-18374380 MS.gene013873:intron 55.0%
! ACAGGAGTTGCTGTTGGAGC+TGG - chr7.1:18375492-18375511 MS.gene013873:intron 55.0%
! AGCTCCATTGACTGCTGCTG+TGG - chr7.1:18374924-18374943 MS.gene013873:intron 55.0%
CAGGCCCTGCCATGTTCACT+AGG - chr7.1:18372145-18372164 MS.gene013873:intron 60.0%
CCGTTGCAGACTGCTGTCGT+TGG - chr7.1:18374991-18375010 MS.gene013873:CDS 60.0%
GCTAGGCATGGCAAGTGCAC+TGG - chr7.1:18372697-18372716 MS.gene013873:intron 60.0%
GGTGCTCTAGTGGCCCATGA+AGG + chr7.1:18374973-18374992 None:intergenic 60.0%
! GAGTTGCTGTTGGAGCTGGC+TGG - chr7.1:18375496-18375515 MS.gene013873:intron 60.0%
TGAGGTAGGGCGACCGTCCT+AGG - chr7.1:18373388-18373407 MS.gene013873:intron 65.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 18372030 18376134 18372030 ID=MS.gene013873
chr7.1 mRNA 18372030 18376134 18372030 ID=MS.gene013873.t1;Parent=MS.gene013873
chr7.1 exon 18375877 18376134 18375877 ID=MS.gene013873.t1.exon1;Parent=MS.gene013873.t1
chr7.1 CDS 18375877 18376134 18375877 ID=cds.MS.gene013873.t1;Parent=MS.gene013873.t1
chr7.1 exon 18374928 18375466 18374928 ID=MS.gene013873.t1.exon2;Parent=MS.gene013873.t1
chr7.1 CDS 18374928 18375466 18374928 ID=cds.MS.gene013873.t1;Parent=MS.gene013873.t1
chr7.1 exon 18374380 18374466 18374380 ID=MS.gene013873.t1.exon3;Parent=MS.gene013873.t1
chr7.1 CDS 18374380 18374466 18374380 ID=cds.MS.gene013873.t1;Parent=MS.gene013873.t1
chr7.1 exon 18374187 18374243 18374187 ID=MS.gene013873.t1.exon4;Parent=MS.gene013873.t1
chr7.1 CDS 18374187 18374243 18374187 ID=cds.MS.gene013873.t1;Parent=MS.gene013873.t1
chr7.1 exon 18373706 18373944 18373706 ID=MS.gene013873.t1.exon5;Parent=MS.gene013873.t1
chr7.1 CDS 18373706 18373944 18373706 ID=cds.MS.gene013873.t1;Parent=MS.gene013873.t1
chr7.1 exon 18372550 18372668 18372550 ID=MS.gene013873.t1.exon6;Parent=MS.gene013873.t1
chr7.1 CDS 18372550 18372668 18372550 ID=cds.MS.gene013873.t1;Parent=MS.gene013873.t1
chr7.1 exon 18372193 18372279 18372193 ID=MS.gene013873.t1.exon7;Parent=MS.gene013873.t1
chr7.1 CDS 18372193 18372279 18372193 ID=cds.MS.gene013873.t1;Parent=MS.gene013873.t1
chr7.1 exon 18372030 18372113 18372030 ID=MS.gene013873.t1.exon8;Parent=MS.gene013873.t1
chr7.1 CDS 18372030 18372113 18372030 ID=cds.MS.gene013873.t1;Parent=MS.gene013873.t1
Gene Sequence

>MS.gene013873

ATGGGATCAGAAGAGCTAAACAAGAACCTTTTGCAGCATCAAAACCCTTCAGAGGAGGAAGAAGAGCCACTAAGGAAAAGGGTATGGGAAGAAAGCAAGAAGTTGTGGATAGTAGCAGGCCCTGCCATGTTCACTAGGTTTTCAACATTTGGTATCATGATAGTTACTCAATCCTTCATTGGTTACATTGGTTCAACTGAGTTAGCTGCTTATTCCCTTGTTATGACTGTCTTAGTCAGATTTGCAAATGGTATTCTGGTAAGTCAATACATTTATAGTCAAGGACAACTTTTTAAAATCTTGCTTTTTGTTATGACTTGTACTATTATATGTACCGATGCGACCTCAGTCACAGTTATACTATAGACGTAAAAACCGTGATGCGCAAACATAAATACATTTGTAGTCACGGACAATTTTTGTAAATCTTGCTTTTTAAGTTATATCTTGAATGTATTTGGGGTGTGTGCACATATAAATATGCATTGAGGCACAATGTTTTAGATTTTAAAAAAAGTTATAGTTTACATTGAAATTTGGACCATTTGATATTTATTGGACAATTTAGATGTGACTTGTGCGTTATCACTAAACAAAATCTAAATGTAAGATGTGAAATCTATGTTTGTTTTTTTAATATTTTGTTTTTTGCAAATTGAAAATTATAGCTAGGCATGGCAAGTGCACTGGAAACTCTATGTGGACAAGCATATGGAGCAAAACAATATTATATGCTAGGAGTATATCTTCAAAGATCATGGATAGTTTTATTCATAACCTCAATTTTTCTTCTTCCAATATACATTTTTACCTCTCCAATTTTAGAGACACTTGGCCAAGATAAAAGTATTGCACATGCTGCAGGAAGCATTTCTATATGGTCAATAGGTATAGTATTTGCTTTCTCTGTCTCATTCACTTGTCAAATGTTCCTACAAGCACAAAGCAAGAACAAGATTATTGCTTACCTTGCAGCAGTTTCAATTTCAATACATGTTTTTATGTCATGGCTTTTAACTGTTAAGTTCAAGTTTGGGGTTAATGGTGCAATGACATCAATCCTTTTGGCTTATTGGATACCAAATTTGGGCCAGCTTGTTTTTATCATGACAAAATGTCCTGATACATGGAAGGGTTTCTCATTTTTTGCCTTCAAAGATCTTTGGCCTGTTATCAAGCTTTCTTTGTCTTCTGGAGTTATGTTATGGTAAGAGTTTGATCAATTTTTGTAATCAATTTCTGATATTTTCTTTTGCTTTGTAATTAATTTTGGTTGCTATTTCTCATAAAGTATGTGATATGAATATAATTACCTATATGTTTTTTTTTTTACTTCATAGTTACCTATGGGCCGTATTTGAGGTAGGGCGACCGTCCTAGGCTCAAAAAAATTAGTACCATAATTGAGTCCCAATTTTTTTTCTAGGGGTCCATTAGACCCTAAAAAAATTTGCTTAGTTTTTTTGCATAAAGTTCAATGTTTATATATATTTATTAGTTAAGACCTAAATTGTAGGTTTGCCATAGGCCACCAAAATCTCAGAAACGGCCTATGTTACCTTATAGTGTAGTTGTATCATTAGTTTTATATTGCATGGTGAAAGACCGAAAATATTGTTGCAATAAAAGAGACATTGAGCTAACATAAATCTATGGTTCCTTTTACAGTCTTGAAATATGGTACAACACAGTTTTGATTCTTCTAACAGGAAACATGGAAAATGCTGAGATTTCCATTGATGCTCTATCCATATGGTACTACATTTCATTTCTCATTCATATTCTTACTTCTACTTTTGCTTCAAATTTAGTATCAAGGGACACAATCGCCATGCTTTTTAATATTTAAACTAATCTGTTGATTTAATCAAATTATCTTTTTATTTTGCAGTCTCAACATCAATGGCTTGGAAACAATGATAGCCCTTGGTTTCTTTGCTGCAGCTGGGTACTTCATTGTGATCATTTTTTTTTAGAGAAATAATTGGACAATTATTATTAATTAAAGTGACGATTATGATCATTTTAATAACATTGTTTATAAATATAATTTGAACTCCGTTTTTTGAAATTACGAAGTCAAACTCTTCTTAACGCACATCATGGACATTAACTATTTTCTTATGTAGTTATAATTATAATACAGTTTATTGAGAAGTTTCTTTTAAATTACATTAGTATTTTTTTCAGTGTTAGGGTGGCAAACGAACTTGGAGGAGGGAATTCGAAGGCAGCAAAATTTTCCATTGTGATAACAGTGCTTACATCATTTTTCATAGGATTTGTGCTATTCTTGATATTTCTATTTCTAAAGGAAAGACTTGCTTACATTTTCACCCCAGACCCAGATGTGGCTAAAGCAGTTGGTGATTTATCACCTTTGTTGTCAATATCCATATTGTTGAACAGTGTTCAACCTGTGCTATCTGGTAAATAAATATTGTTTTTGTTCATTGGTTCAATTACATATATCTTGAACTTCAATTTTAGTCTTATAATATTAGAGGCATGTTATTTAGACACACTATAGTCGGACATCATATCTAACATGATATAAAATACAACTTGAATGTGTGTGGTGTTGGAACCACTTAGAGAGATAAAACAAAATAATGTTGGAATCAATTTGATAGTTAATTGTACAAGACATATTTTCTCATATACTATATTGCGCGTAAACTTAATAGTCAGATAAACATGTTATAAATCAAAGTTTTCTCATGCACCTCACATGCACATTTTGCTCCTTTATATTTTTTTAAAAATTAAATTTATCCTCCCAATGGATCCATATCACCATCTAAAATCTTAAAGATACTATTAGAGGTGTATGTGAAAGATTGAGGACTTAATTAAAAAAAAGATGGTGGGGGGTCAATGGCTATCAACATTGGAGCTCCATTGACTGCTGCTGTGGAGTCGCTTTAAACGCACTGAACTCCTTCATGGGCCACTAGAGCACCGTTGCAGACTGCTGTCGTTGGCCGTTGTGCTTTTGTGTTGACTAGCATTGACGTCCACCACTTTATTATTATTTTTTGGTCAATAGATGAAATGACAAAGATCATCTACAATTTACGCCCACAATTGTAAGGTTTCAAGTTCAAATCCGAACGAAGATGTCCGACCTACCAATATTGATATTGTCAGTTGATGTAAACAATATCCGAATAAAGGATGAGTTGGACAACCATTATTATGATTTCCAACCTAACAATATGTGAATGAAGGTATTTTGATACTTATTTCCAACCTTTATTAGGTATATGAGTTACATATATCTTATATATAAAGGTTTGAAATCACATATACATGTAGTTTTTTTCTTTTTCCGAAGGACATAAACATGTAGTGTTGATGTCGGGTTTTGTGTTCGAGAATCATTTCCGTTAATATCATAAATGAGATGTGAATACCTAATTAGATTATTTGGTTACCTGCTAAATAATTATGTTGTTGAGTACAGGAGTTGCTGTTGGAGCTGGCTGGCAAAGCGTTGCAGCATATGTAAACATTGGCTCCTATTACCTAATTGGGATTCCTATTGGAGTTATGCTTGGTAATCTTCTCCATTTACAAGTTAAGGTAATTAATTTATCATTTACATGAAAAAAGTTAAGTTGCTCAAACGTGAAGAGTAAAATATTAATTAGGCTATATATTTACCAATATATTTTTTATTGCACTACATTATTTTAATTTAGTAAACTATGTGGGTTCCTCACTTTGAAAATATATCTACCACCAAATAGAAAATATATAGGATCCACATAATTTAAAGGGAAATTAGTGCGCCTCATATCAAATCTTGATTAAAGAGATATTGTTGGTTCTAAAATTAGGTCACTTTTGCAGGGTGTTTGGATTGGAATGTTGTTTGGAATTTTTGTTCAAACCATAATGCTTATGATAATCACATTTAAAACTGACTGGCACAAGCAGGTAATCAATTAAGTTGTTACTATTGTCTTTAACCGTGAAATTGATATTCGTTTCTAAAAATTACATATGGATTTTACAGGTTGAGATTGCTCGAAATCGTGTTAATAAATGGACTGTAGTGGAGAAAGAGGAATCAAACAACACATCAAGGGTATCTAGCTAA
Protein sequence

>MS.gene013873.t1

MGSEELNKNLLQHQNPSEEEEEPLRKRVWEESKKLWIVAGPAMFTRFSTFGIMIVTQSFIGYIGSTELAAYSLVMTVLVRFANGILLGMASALETLCGQAYGAKQYYMLGVYLQRSWIVLFITSIFLLPIYIFTSPILETLGQDKSIAHAAGSISIWSIGIVFAFSVSFTCQMFLQAQSKNKIIAYLAAVSISIHVFMSWLLTVKFKFGVNGAMTSILLAYWIPNLGQLVFIMTKCPDTWKGFSFFAFKDLWPVIKLSLSSGVMLCLEIWYNTVLILLTGNMENAEISIDALSICLNINGLETMIALGFFAAAGVRVANELGGGNSKAAKFSIVITVLTSFFIGFVLFLIFLFLKERLAYIFTPDPDVAKAVGDLSPLLSISILLNSVQPVLSGVAVGAGWQSVAAYVNIGSYYLIGIPIGVMLGNLLHLQVKGVWIGMLFGIFVQTIMLMIITFKTDWHKQVEIARNRVNKWTVVEKEESNNTSRVSS