AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41838


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41838.t1 MTR_7g087410 98.031 457 9 0 1 457 36 492 0.0 900
MS.gene41838.t1 MTR_7g087410 97.767 403 9 0 55 457 1 403 0.0 794
MS.gene41838.t1 MTR_7g087400 72.566 452 122 2 1 452 35 484 0.0 686
MS.gene41838.t1 MTR_7g087430 80.051 396 78 1 55 450 1 395 0.0 640
MS.gene41838.t1 MTR_6g027200 68.271 457 142 3 1 455 41 496 0.0 624
MS.gene41838.t1 MTR_7g087370 66.374 455 122 3 1 455 35 458 0.0 608
MS.gene41838.t1 MTR_6g027190 68.326 442 138 2 1 441 29 469 0.0 580
MS.gene41838.t1 MTR_5g032720 49.556 450 224 2 1 449 41 488 1.49e-162 468
MS.gene41838.t1 MTR_3g099700 49.220 449 227 1 1 448 51 499 2.27e-153 445
MS.gene41838.t1 MTR_5g032750 46.889 450 236 3 1 448 41 489 1.48e-149 435
MS.gene41838.t1 MTR_8g069470 46.035 454 243 1 1 452 55 508 7.79e-148 431
MS.gene41838.t1 MTR_1g021740 47.768 448 234 0 1 448 40 487 8.41e-147 428
MS.gene41838.t1 MTR_1g100180 45.295 457 246 2 1 457 48 500 2.27e-145 424
MS.gene41838.t1 MTR_3g099720 47.884 449 230 1 1 449 46 490 8.27e-145 423
MS.gene41838.t1 MTR_5g033100 45.614 456 248 0 1 456 61 516 4.12e-142 417
MS.gene41838.t1 MTR_4g048000 45.861 447 240 2 1 445 69 515 1.15e-135 400
MS.gene41838.t1 MTR_2g088400 46.050 443 238 1 1 442 57 499 7.92e-133 393
MS.gene41838.t1 MTR_2g022980 43.115 443 251 1 1 442 53 495 4.30e-129 383
MS.gene41838.t1 MTR_6g047610 40.271 442 262 2 1 442 36 475 4.85e-119 357
MS.gene41838.t1 MTR_6g047640 40.950 442 260 1 1 442 36 476 3.62e-118 354
MS.gene41838.t1 MTR_2g088400 45.636 401 217 1 1 400 57 457 5.60e-113 340
MS.gene41838.t1 MTR_6g047640 39.713 418 232 2 25 442 60 457 6.48e-111 335
MS.gene41838.t1 MTR_5g090290 42.539 449 257 1 1 448 51 499 1.69e-110 338
MS.gene41838.t1 MTR_6g047590 39.318 440 265 2 1 440 36 473 1.61e-107 327
MS.gene41838.t1 MTR_8g063590 37.389 452 278 4 1 448 58 508 3.37e-93 291
MS.gene41838.t1 MTR_6g081410 36.913 447 275 4 4 445 33 477 8.98e-91 284
MS.gene41838.t1 MTR_6g081780 37.130 439 269 4 4 437 33 469 3.92e-88 277
MS.gene41838.t1 MTR_7g082810 37.445 454 281 2 1 451 25 478 1.50e-87 276
MS.gene41838.t1 MTR_1g108810 35.581 430 276 1 4 432 42 471 5.72e-87 274
MS.gene41838.t1 MTR_6g066380 37.273 440 267 5 4 437 35 471 5.59e-86 271
MS.gene41838.t1 MTR_5g087930 37.731 432 245 5 21 449 51 461 3.61e-85 269
MS.gene41838.t1 MTR_6g081300 35.165 455 287 6 4 454 18 468 6.26e-85 268
MS.gene41838.t1 MTR_8g106670 35.294 425 270 3 18 439 34 456 7.26e-82 261
MS.gene41838.t1 MTR_6g004220 35.045 448 284 4 4 446 31 476 9.18e-82 261
MS.gene41838.t1 MTR_6g081240 34.375 416 271 2 17 430 30 445 1.25e-79 254
MS.gene41838.t1 MTR_6g081390 34.240 441 282 6 4 439 20 457 3.54e-79 253
MS.gene41838.t1 MTR_6g081810 35.780 436 251 5 4 437 35 443 1.83e-78 251
MS.gene41838.t1 MTR_6g081400 32.955 440 289 4 4 439 23 460 3.21e-78 251
MS.gene41838.t1 MTR_6g004220 35.035 431 274 3 4 430 38 466 8.34e-78 251
MS.gene41838.t1 MTR_2g078930 35.613 424 270 2 7 428 54 476 3.37e-75 244
MS.gene41838.t1 MTR_2g079020 34.906 424 273 2 7 428 48 470 2.08e-74 242
MS.gene41838.t1 MTR_2g078960 35.934 423 270 1 7 428 44 466 2.65e-73 239
MS.gene41838.t1 MTR_1g108840 34.096 437 283 3 4 437 49 483 1.11e-72 237
MS.gene41838.t1 MTR_6g081310 34.174 436 268 4 18 437 18 450 3.75e-71 233
MS.gene41838.t1 MTR_1g108990 33.560 441 288 3 4 441 33 471 1.88e-70 231
MS.gene41838.t1 MTR_2g078970 35.211 426 273 2 5 428 40 464 3.55e-70 231
MS.gene41838.t1 MTR_1g109060 34.253 435 285 1 4 437 32 466 2.66e-69 228
MS.gene41838.t1 MTR_5g090280 34.803 431 228 9 55 448 1 415 2.35e-68 224
MS.gene41838.t1 MTR_7g082800 32.995 394 262 2 55 447 1 393 2.62e-67 220
MS.gene41838.t1 MTR_1g109060 34.253 435 284 2 4 437 32 465 4.97e-67 222
MS.gene41838.t1 MTR_0039s0080 28.200 461 315 5 4 453 46 501 7.43e-54 188
MS.gene41838.t1 MTR_1g101500 28.508 449 312 3 4 447 72 516 5.22e-53 186
MS.gene41838.t1 MTR_6g004220 32.597 362 238 3 4 361 38 397 2.59e-52 182
MS.gene41838.t1 MTR_3g111020 27.660 470 302 8 4 452 59 511 5.07e-52 184
MS.gene41838.t1 MTR_5g010830 28.767 438 301 5 4 435 73 505 1.23e-51 182
MS.gene41838.t1 MTR_5g067460 25.275 455 323 4 4 449 63 509 5.86e-49 176
MS.gene41838.t1 MTR_2g078990 34.364 291 188 2 140 428 4 293 5.62e-46 162
MS.gene41838.t1 MTR_4g027920 26.000 450 325 4 4 450 164 608 4.83e-45 166
MS.gene41838.t1 MTR_6g043810 24.421 475 335 7 1 457 28 496 1.18e-40 152
MS.gene41838.t1 MTR_6g043810 24.421 475 335 7 1 457 38 506 1.52e-40 152
MS.gene41838.t1 MTR_2g079030 38.860 193 118 0 234 426 319 511 6.46e-35 137
MS.gene41838.t1 MTR_2g435930 24.494 445 303 5 26 447 49 483 2.20e-33 132
MS.gene41838.t1 MTR_6g004220 30.961 281 188 3 4 280 38 316 3.21e-33 128
MS.gene41838.t1 MTR_6g088805 24.017 458 335 5 4 456 35 484 8.35e-31 124
MS.gene41838.t1 MTR_5g011540 26.539 471 316 7 4 457 51 508 5.41e-30 122
MS.gene41838.t1 MTR_8g102430 24.385 447 289 9 3 434 30 442 4.06e-29 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41838.t1 AT1G33110 64.653 447 158 0 1 447 40 486 0.0 615
MS.gene41838.t1 AT1G33100 63.087 447 165 0 1 447 37 483 0.0 602
MS.gene41838.t1 AT1G33090 62.640 447 167 0 1 447 40 486 0.0 588
MS.gene41838.t1 AT1G33080 61.915 449 171 0 1 449 40 488 0.0 587
MS.gene41838.t1 AT1G33080 63.256 430 158 0 1 430 40 469 0.0 572
MS.gene41838.t1 AT1G33110 66.758 364 121 0 1 364 40 403 5.89e-178 504
MS.gene41838.t1 AT5G44050 48.655 446 228 1 1 445 44 489 1.22e-154 448
MS.gene41838.t1 AT5G65380 48.984 443 225 1 1 442 41 483 3.47e-154 446
MS.gene41838.t1 AT1G47530 48.330 449 229 1 1 449 39 484 1.58e-147 429
MS.gene41838.t1 AT1G12950 46.799 453 240 1 1 453 71 522 5.46e-145 424
MS.gene41838.t1 AT4G00350 46.136 440 236 1 1 440 92 530 1.62e-144 424
MS.gene41838.t1 AT3G26590 46.591 440 235 0 1 440 49 488 5.57e-143 419
MS.gene41838.t1 AT1G23300 45.952 457 245 1 1 457 48 502 4.18e-142 417
MS.gene41838.t1 AT5G10420 48.438 448 230 1 1 447 42 489 2.76e-141 414
MS.gene41838.t1 AT5G38030 45.089 448 245 1 1 448 49 495 4.84e-140 411
MS.gene41838.t1 AT1G61890 46.593 455 235 2 4 457 54 501 3.98e-139 409
MS.gene41838.t1 AT1G11670 47.273 440 231 1 4 442 57 496 8.31e-138 405
MS.gene41838.t1 AT5G17700 45.217 460 243 1 1 451 38 497 5.57e-137 403
MS.gene41838.t1 AT5G17700 45.217 460 243 1 1 451 38 497 5.57e-137 403
MS.gene41838.t1 AT3G03620 45.778 450 244 0 1 450 41 490 1.19e-136 402
MS.gene41838.t1 AT3G03620 45.778 450 244 0 1 450 41 490 1.19e-136 402
MS.gene41838.t1 AT1G61890 48.252 429 221 1 4 431 54 482 4.29e-135 398
MS.gene41838.t1 AT1G47530 49.620 395 196 1 55 449 1 392 1.30e-133 390
MS.gene41838.t1 AT4G25640 46.102 449 241 1 1 449 38 485 2.19e-133 394
MS.gene41838.t1 AT4G25640 46.102 449 241 1 1 449 38 485 6.85e-133 393
MS.gene41838.t1 AT3G21690 47.045 440 232 1 4 442 59 498 1.06e-130 387
MS.gene41838.t1 AT3G26590 47.409 386 203 0 55 440 1 386 2.51e-128 377
MS.gene41838.t1 AT4G21910 43.430 449 248 3 4 449 62 507 1.11e-125 375
MS.gene41838.t1 AT4G21910 43.430 449 248 3 4 449 62 507 1.11e-125 375
MS.gene41838.t1 AT4G21910 43.207 449 249 3 4 449 64 509 2.95e-124 371
MS.gene41838.t1 AT4G21910 43.207 449 249 3 4 449 64 509 2.95e-124 371
MS.gene41838.t1 AT1G61890 48.205 390 201 1 4 392 54 443 2.12e-119 357
MS.gene41838.t1 AT4G25640 46.867 399 211 1 1 399 38 435 4.09e-119 356
MS.gene41838.t1 AT4G21903 43.146 445 232 4 17 453 73 504 6.78e-119 357
MS.gene41838.t1 AT4G21903 42.890 436 229 4 17 440 73 500 1.17e-114 347
MS.gene41838.t1 AT4G21903 44.250 400 217 2 55 453 1 395 1.75e-113 339
MS.gene41838.t1 AT3G59030 40.000 455 266 3 1 453 55 504 1.48e-112 341
MS.gene41838.t1 AT5G17700 45.879 364 197 0 1 364 38 401 2.76e-107 324
MS.gene41838.t1 AT5G52450 36.404 456 277 4 4 452 33 482 1.12e-86 273
MS.gene41838.t1 AT2G34360 35.177 452 268 7 3 444 33 469 1.20e-83 266
MS.gene41838.t1 AT1G73700 35.982 453 278 3 4 451 31 476 9.46e-83 263
MS.gene41838.t1 AT3G59030 37.845 362 224 1 1 361 55 416 6.44e-81 257
MS.gene41838.t1 AT1G15150 36.564 454 271 8 5 449 39 484 1.07e-79 255
MS.gene41838.t1 AT1G66780 35.831 427 269 4 14 437 52 476 1.82e-77 249
MS.gene41838.t1 AT1G15160 35.463 454 276 8 5 449 39 484 2.99e-77 249
MS.gene41838.t1 AT1G15170 36.136 440 268 6 5 437 42 475 1.51e-74 242
MS.gene41838.t1 AT1G71140 33.636 440 281 5 4 437 33 467 1.79e-74 242
MS.gene41838.t1 AT1G64820 32.599 454 295 6 4 451 36 484 1.89e-73 239
MS.gene41838.t1 AT2G04080 33.787 441 279 5 4 437 34 468 1.31e-72 237
MS.gene41838.t1 AT1G66760 34.831 445 269 7 4 437 35 469 1.31e-72 237
MS.gene41838.t1 AT1G66760 35.000 440 265 7 4 432 35 464 4.85e-71 232
MS.gene41838.t1 AT2G04040 32.952 437 288 3 4 437 34 468 1.80e-70 231
MS.gene41838.t1 AT2G04080 33.638 437 277 5 4 433 34 464 3.60e-70 230
MS.gene41838.t1 AT1G15180 36.136 440 268 6 5 437 43 476 2.63e-68 226
MS.gene41838.t1 AT2G04070 33.790 438 283 5 4 437 34 468 1.16e-67 224
MS.gene41838.t1 AT3G23560 35.211 426 269 3 7 428 49 471 6.17e-67 222
MS.gene41838.t1 AT2G34360 31.920 448 248 7 3 445 33 428 8.00e-67 221
MS.gene41838.t1 AT3G23550 33.333 423 281 1 7 428 41 463 5.77e-66 219
MS.gene41838.t1 AT1G15150 35.580 371 229 5 86 449 1 368 7.23e-65 213
MS.gene41838.t1 AT2G04050 32.426 441 285 4 4 437 34 468 3.41e-64 214
MS.gene41838.t1 AT2G04100 32.880 441 283 6 4 437 37 471 9.63e-63 211
MS.gene41838.t1 AT1G15170 36.212 359 219 5 86 437 1 356 1.81e-62 207
MS.gene41838.t1 AT2G04100 32.802 439 282 6 4 435 37 469 3.92e-61 206
MS.gene41838.t1 AT2G04090 32.280 443 283 6 4 437 37 471 7.29e-61 206
MS.gene41838.t1 AT1G66760 34.795 342 210 5 98 432 1 336 9.97e-54 183
MS.gene41838.t1 AT2G38510 25.551 454 326 5 4 450 13 461 2.09e-49 176
MS.gene41838.t1 AT3G23560 35.376 359 225 3 7 361 49 404 8.71e-49 172
MS.gene41838.t1 AT1G66760 33.333 369 225 7 4 361 35 393 5.46e-46 164
MS.gene41838.t1 AT1G58340 25.858 437 315 3 4 435 65 497 5.12e-44 162
MS.gene41838.t1 AT5G19700 27.015 459 317 5 4 453 43 492 1.35e-38 146
MS.gene41838.t1 AT1G71870 22.385 478 348 6 1 457 28 503 9.75e-38 144
MS.gene41838.t1 AT4G29140 25.676 444 311 6 1 434 60 494 4.37e-36 140
MS.gene41838.t1 AT4G23030 27.416 445 307 6 16 451 51 488 1.28e-35 138
MS.gene41838.t1 AT1G15180 34.629 283 175 5 86 361 1 280 1.97e-35 136
MS.gene41838.t1 AT5G52050 24.116 481 321 6 4 457 42 505 2.29e-35 137
MS.gene41838.t1 AT5G49130 25.161 465 329 4 1 448 30 492 9.54e-33 130
MS.gene41838.t1 AT2G04066 43.103 116 66 0 322 437 48 163 5.82e-27 106
MS.gene41838.t1 AT4G22790 25.612 449 301 12 4 434 37 470 1.04e-22 100

Find 95 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAATGATTTCAACTATTT+TGG 0.128485 7.3:-21607819 MS.gene41838:CDS
TTGACAATGAAATACGAATT+TGG 0.132006 7.3:-21607851 MS.gene41838:CDS
GAACACCATCATTGCATTCT+TGG 0.238540 7.3:-21607915 MS.gene41838:CDS
ATTCCTGTTGGGGTTGTTCT+TGG 0.263732 7.3:-21606479 MS.gene41838:CDS
ACAATAAAAGCAAACATAAT+TGG 0.272274 7.3:+21607977 None:intergenic
GAGGAATGCATGAATAATTA+TGG 0.285003 7.3:+21607883 None:intergenic
GATGATATCACTTGGTTTCA+TGG 0.286945 7.3:-21607109 MS.gene41838:CDS
AACTGCACTTGTTCTTCTTC+CGG 0.309112 7.3:-21608089 MS.gene41838:CDS
TGACAATGAAATACGAATTT+GGG 0.314225 7.3:-21607850 MS.gene41838:CDS
GCATATGGTGCAAAAGAATA+TGG 0.321833 7.3:-21608157 MS.gene41838:CDS
TTGCAGGAAACATCTCTCTT+TGG 0.351337 7.3:-21608006 MS.gene41838:CDS
ACTGCATTGGCGACCCTTTG+TGG 0.360631 7.3:-21608184 MS.gene41838:CDS
ATCTGGATGGGAATGTTGTT+TGG 0.361940 7.3:-21606223 MS.gene41838:CDS
GCTATGGTACAACACAATAT+TGG 0.365741 7.3:-21607355 MS.gene41838:CDS
TTATTCATGCATTCCTCTCT+TGG 0.371620 7.3:-21607877 MS.gene41838:CDS
ACATCATAGGTATTCCTGTT+GGG 0.378560 7.3:-21606490 MS.gene41838:CDS
ATAGGTTGTTATTACATCAT+AGG 0.385071 7.3:-21606503 MS.gene41838:CDS
TAATCACCTACAAAACCAAC+TGG 0.393658 7.3:-21606171 MS.gene41838:CDS
ATTTCAACAGGAGTGGCAAT+TGG 0.399246 7.3:-21606560 MS.gene41838:intron
GGCCTAAGAGAGTCAAGATT+GGG 0.401790 7.3:+21608050 None:intergenic
AAATTGATGCACTATCTATA+TGG 0.406199 7.3:-21607296 MS.gene41838:intron
GAAAATCTTGTGAATATTGC+TGG 0.419464 7.3:+21609311 None:intergenic
ACCCCAATCTTGACTCTCTT+AGG 0.428239 7.3:-21608052 MS.gene41838:CDS
AAATATGAGTTGACCAATGT+TGG 0.433777 7.3:+21607784 None:intergenic
CTTCTGATATGCTTTCATCT+TGG 0.434393 7.3:+21608029 None:intergenic
GTCAAACTTTCCCTTTCAGC+TGG 0.437394 7.3:-21607689 MS.gene41838:CDS
TTTGTGATTGAAGGAATGTT+TGG 0.439478 7.3:+21607942 None:intergenic
ACAGGAGTGGCAATTGGAGC+AGG 0.444328 7.3:-21606554 MS.gene41838:intron
CAACATTGCACCAGCTGAAA+GGG 0.447324 7.3:+21607679 None:intergenic
ACCCTTTGTGGACAAGCATA+TGG 0.455701 7.3:-21608172 MS.gene41838:CDS
TGTTCTTGCTTTGTGATTGA+AGG 0.457141 7.3:+21607933 None:intergenic
GAGAAACCTTGCCAAGTCTC+AGG 0.471152 7.3:+21607743 None:intergenic
TGCGGCCACCTCTTTATTCG+AGG 0.471701 7.3:+21606838 None:intergenic
TTACCAAGAACAACCCCAAC+AGG 0.474968 7.3:+21606476 None:intergenic
GAAGAAGAACAAGTGCAGTT+AGG 0.479209 7.3:+21608092 None:intergenic
ATGAATATTGTAGTTGGGAA+TGG 0.482830 7.3:-21608209 MS.gene41838:intron
TAGCTCGCAAGCGTGTAAAC+AGG 0.483098 7.3:-21606026 MS.gene41838:CDS
AAATACGAATTTGGGATTGC+TGG 0.485502 7.3:-21607842 MS.gene41838:CDS
GAGTATATCTTCAAAGATCA+TGG 0.493939 7.3:-21608126 MS.gene41838:CDS
TGCAAAAGAATATGGAATGA+TGG 0.495159 7.3:-21608149 MS.gene41838:CDS
TTCTTGGTAATGTTATCCAT+TGG 0.504552 7.3:-21606463 MS.gene41838:CDS
TATTATGCAGTCTTGAGCTA+TGG 0.507079 7.3:-21607371 MS.gene41838:intron
AATATGAGTTGACCAATGTT+GGG 0.515656 7.3:+21607785 None:intergenic
ATTAACAGTCTCAACATCAA+TGG 0.515679 7.3:-21607141 MS.gene41838:intron
TGTGACAGTGCTTACGTCGT+TGG 0.516527 7.3:-21606924 MS.gene41838:CDS
CATCATAGGTATTCCTGTTG+GGG 0.518377 7.3:-21606489 MS.gene41838:CDS
TACATCATAGGTATTCCTGT+TGG 0.519474 7.3:-21606491 MS.gene41838:CDS
GTATCAAATGAGCTTGGTAA+AGG 0.521672 7.3:-21606977 MS.gene41838:CDS
CAAAACCAACTGGGATGAGC+AGG 0.522487 7.3:-21606161 MS.gene41838:intron
TGGCCTAAGAGAGTCAAGAT+TGG 0.522781 7.3:+21608049 None:intergenic
ACCATATGCTTGTCCACAAA+GGG 0.523264 7.3:+21608171 None:intergenic
TTTCGATAGGGTATCTGGAT+GGG 0.528960 7.3:-21606235 MS.gene41838:intron
ACAGTCTCAACATCAATGGA+TGG 0.534228 7.3:-21607137 MS.gene41838:intron
TTTCAGCTGGTGCAATGTTG+TGG 0.537720 7.3:-21607676 MS.gene41838:intron
TAGTTTGTACCTGAGAGTAC+TGG 0.540006 7.3:+21606758 None:intergenic
TTGATCAGTACTGTCCACCT+TGG 0.543507 7.3:+21605999 None:intergenic
CACCATATGCTTGTCCACAA+AGG 0.545263 7.3:+21608170 None:intergenic
GAAAGCATATCAGAAGTTGC+AGG 0.546308 7.3:-21608022 MS.gene41838:CDS
TCATATTTGTTACATGTGGT+TGG 0.546428 7.3:-21607769 MS.gene41838:CDS
TGGTGTCCTGAGACTTGGCA+AGG 0.562901 7.3:-21607749 MS.gene41838:CDS
GTTGGGAATGGCGACTGCAT+TGG 0.565516 7.3:-21608197 MS.gene41838:CDS
GAAAGGGAAAGTTTGACGAC+AGG 0.566650 7.3:+21607695 None:intergenic
TCATACCTGCTCATCCCAGT+TGG 0.566874 7.3:+21606156 None:intergenic
GTGGTTGGTGTCCTGAGACT+TGG 0.570911 7.3:-21607754 MS.gene41838:CDS
AGCTGCCAAGAATGCAATGA+TGG 0.574760 7.3:+21607910 None:intergenic
CAGTCTCAACATCAATGGAT+GGG 0.575086 7.3:-21607136 MS.gene41838:CDS
ACAACATTGCACCAGCTGAA+AGG 0.577683 7.3:+21607678 None:intergenic
AGCCTACCTTGACTTGCCAA+TGG 0.579025 7.3:+21606447 None:intergenic
AGTGTTCAACCAGTACTCTC+AGG 0.579086 7.3:-21606767 MS.gene41838:intron
CACAACGATCGAGAACTTCG+CGG 0.579588 7.3:+21606943 None:intergenic
GCATATTGGATTCCCAACAT+TGG 0.580747 7.3:-21607797 MS.gene41838:CDS
AAAGAGGTGGCCGCAGCTGT+CGG 0.584660 7.3:-21606830 MS.gene41838:CDS
GTGCTTACGTCGTTGGCCAT+CGG 0.585684 7.3:-21606917 MS.gene41838:CDS
CAACTCATATTTGTTACATG+TGG 0.589602 7.3:-21607773 MS.gene41838:CDS
GCAAAAGAATATGGAATGAT+GGG 0.591328 7.3:-21608148 MS.gene41838:CDS
GTTCGAGTATCAAATGAGCT+TGG 0.593317 7.3:-21606983 MS.gene41838:CDS
GCGTGTAAACAGGTGGTCCA+AGG 0.594189 7.3:-21606016 MS.gene41838:CDS
GTTCTCATTAGGTTCGCCAA+TGG 0.599406 7.3:-21609203 MS.gene41838:CDS
ACAGTAGCATATGTGAACAT+AGG 0.603815 7.3:-21606521 MS.gene41838:CDS
TGTTATCCATTGGCAAGTCA+AGG 0.605886 7.3:-21606453 MS.gene41838:intron
CAGGAGTGGCAATTGGAGCA+GGG 0.627575 7.3:-21606553 MS.gene41838:CDS
AGTACTCACGAGAATACCAT+TGG 0.633680 7.3:+21609187 None:intergenic
CGATAATTCTCCGACAGCTG+CGG 0.636484 7.3:+21606820 None:intergenic
TTGGTTTCATGGCTGCAGCA+AGG 0.642144 7.3:-21607098 MS.gene41838:intron
TCATTGTCAAAAGCCAAGAG+AGG 0.649754 7.3:+21607864 None:intergenic
CTCGCAAGCGTGTAAACAGG+TGG 0.656106 7.3:-21606023 MS.gene41838:CDS
AGTATAGAGATCGATAACAA+AGG 0.663232 7.3:+21606797 None:intergenic
TTTCACCTCGAATAAAGAGG+TGG 0.663498 7.3:-21606843 MS.gene41838:CDS
GGGGTTGTGAAGACAAACAC+CGG 0.664900 7.3:+21608070 None:intergenic
TGGGAAATGATGATATCACT+TGG 0.667441 7.3:-21607117 MS.gene41838:CDS
GCCTAAGAGAGTCAAGATTG+GGG 0.676104 7.3:+21608051 None:intergenic
AATCACCTACAAAACCAACT+GGG 0.676987 7.3:-21606170 MS.gene41838:CDS
TGTAAACAGGTGGTCCAAGG+TGG 0.678230 7.3:-21606013 MS.gene41838:CDS
TGAAACAAAGCTTATGTGGG+TGG 0.707571 7.3:-21609342 None:intergenic
GAGTGGCAATTGGAGCAGGG+TGG 0.718007 7.3:-21606550 MS.gene41838:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGTTTGTTTAATTAATA+AGG + chr7.3:21609045-21609064 None:intergenic 10.0%
!! AAAAAATATGTTATCCATAA+AGG + chr7.3:21607861-21607880 None:intergenic 15.0%
!! ATTTAATTACTATACATTGT+CGG + chr7.3:21609202-21609221 None:intergenic 15.0%
!!! AAGTAAATGTAAATTTTCAA+TGG + chr7.3:21608285-21608304 None:intergenic 15.0%
!! AATACCAAAACATCATATAA+GGG + chr7.3:21606558-21606577 None:intergenic 20.0%
!! ACAATAAAAGCAAACATAAT+TGG + chr7.3:21607324-21607343 None:intergenic 20.0%
!! CATATATATAACTTATGCAA+AGG + chr7.3:21609015-21609034 None:intergenic 20.0%
!! CATTTCAATGATTATGATTA+TGG - chr7.3:21606638-21606657 MS.gene41838:intron 20.0%
!! GTAAAATGAATATTGTAGTT+GGG - chr7.3:21607084-21607103 MS.gene41838:intron 20.0%
!! GTATAACTGTATATTAGTAA+AGG - chr7.3:21606662-21606681 MS.gene41838:intron 20.0%
!! TAATACCAAAACATCATATA+AGG + chr7.3:21606559-21606578 None:intergenic 20.0%
!! TGTAAAATGAATATTGTAGT+TGG - chr7.3:21607083-21607102 MS.gene41838:intron 20.0%
!! TTATTAAGATATTGTTAACG+AGG + chr7.3:21609179-21609198 None:intergenic 20.0%
!! TTTAATGCAATCATATCTAT+CGG - chr7.3:21606363-21606382 MS.gene41838:intron 20.0%
!! TTTATACTTGTCAAAGAATA+TGG - chr7.3:21608688-21608707 MS.gene41838:intron 20.0%
!!! AAACTTGTTAATTTTAAGGA+AGG - chr7.3:21606450-21606469 MS.gene41838:intron 20.0%
!!! ATTAAACAAACATTTTCGAT+AGG - chr7.3:21609050-21609069 MS.gene41838:intron 20.0%
!!! ATTCTAGAGATTAATTGAAT+GGG - chr7.3:21606587-21606606 MS.gene41838:intron 20.0%
!!! CTCAAAACTTGTTAATTTTA+AGG - chr7.3:21606446-21606465 MS.gene41838:intron 20.0%
!!! TTAAAATGTTGTCACTTTAT+TGG - chr7.3:21606717-21606736 MS.gene41838:intron 20.0%
!!! TTAAACAAACATTTTCGATA+GGG - chr7.3:21609051-21609070 MS.gene41838:intron 20.0%
!!! TTTTTAAAAGAACTATGAAC+AGG - chr7.3:21606877-21606896 MS.gene41838:CDS 20.0%
! AAAGGTAATTTCATTTCAAC+AGG - chr7.3:21608726-21608745 MS.gene41838:intron 25.0%
! AAATTGATGCACTATCTATA+TGG - chr7.3:21608002-21608021 MS.gene41838:CDS 25.0%
! AATTAAGGATGAGTTAATCT+TGG - chr7.3:21607706-21607725 MS.gene41838:CDS 25.0%
! ATACCAAAACATCATATAAG+GGG + chr7.3:21606557-21606576 None:intergenic 25.0%
! CCTTCAACAAAAATATACAA+AGG + chr7.3:21606757-21606776 None:intergenic 25.0%
! GTAAGCATATAAGATGAAAA+AGG + chr7.3:21608259-21608278 None:intergenic 25.0%
! TAAGAAGAACAAAAACAGAA+AGG + chr7.3:21608409-21608428 None:intergenic 25.0%
! TGACAATGAAATACGAATTT+GGG - chr7.3:21607448-21607467 MS.gene41838:intron 25.0%
! TTGACAATGAAATACGAATT+TGG - chr7.3:21607447-21607466 MS.gene41838:intron 25.0%
! TTTGATGCATGTTTGAATTA+AGG - chr7.3:21607691-21607710 MS.gene41838:CDS 25.0%
!! ATAGGTTGTTATTACATCAT+AGG - chr7.3:21608795-21608814 MS.gene41838:intron 25.0%
!! ATTATTAGTCAAGCTTTTGT+TGG - chr7.3:21606026-21606045 MS.gene41838:CDS 25.0%
!! GATTCTAGAGATTAATTGAA+TGG - chr7.3:21606586-21606605 MS.gene41838:intron 25.0%
!! TGCAATGATTTCAACTATTT+TGG - chr7.3:21607479-21607498 MS.gene41838:intron 25.0%
!! TGTATCTTTTGTCAAAATCA+CGG - chr7.3:21607759-21607778 MS.gene41838:CDS 25.0%
!! TGTGAATTAGTTTGATGAAT+TGG - chr7.3:21608584-21608603 MS.gene41838:intron 25.0%
!! TTCACAAGATTTTCAACTTT+TGG - chr7.3:21605996-21606015 MS.gene41838:CDS 25.0%
!! TTCTAGAGATTAATTGAATG+GGG - chr7.3:21606588-21606607 MS.gene41838:intron 25.0%
!! TTTTAGCATTCAAAGATCTT+TGG - chr7.3:21607580-21607599 MS.gene41838:intron 25.0%
!!! CCTTTGTATATTTTTGTTGA+AGG - chr7.3:21606754-21606773 MS.gene41838:intron 25.0%
!!! TTTCAACTATTTTGGCATAT+TGG - chr7.3:21607487-21607506 MS.gene41838:intron 25.0%
AGTATAGAGATCGATAACAA+AGG + chr7.3:21608504-21608523 None:intergenic 30.0%
ATAAGATGAAAAAGGATGGA+TGG + chr7.3:21608251-21608270 None:intergenic 30.0%
ATGAATATTGTAGTTGGGAA+TGG - chr7.3:21607089-21607108 MS.gene41838:intron 30.0%
ATTAACAGTCTCAACATCAA+TGG - chr7.3:21608157-21608176 MS.gene41838:CDS 30.0%
CATCAAACTAATTCACATAG+TGG + chr7.3:21608581-21608600 None:intergenic 30.0%
GAAAATCTTGTGAATATTGC+TGG + chr7.3:21605990-21606009 None:intergenic 30.0%
GAGGAATGCATGAATAATTA+TGG + chr7.3:21607418-21607437 None:intergenic 30.0%
GAGTATATCTTCAAAGATCA+TGG - chr7.3:21607172-21607191 MS.gene41838:intron 30.0%
GCAAAAGAATATGGAATGAT+GGG - chr7.3:21607150-21607169 MS.gene41838:intron 30.0%
GCATATAAGATGAAAAAGGA+TGG + chr7.3:21608255-21608274 None:intergenic 30.0%
TAATTTCATTTCAACAGGAG+TGG - chr7.3:21608731-21608750 MS.gene41838:intron 30.0%
TACTATTATGTCGTCCTTTA+TGG - chr7.3:21607844-21607863 MS.gene41838:CDS 30.0%
TGCAAAAGAATATGGAATGA+TGG - chr7.3:21607149-21607168 MS.gene41838:intron 30.0%
TGGAAGAAATGAAAGCAAAA+AGG - chr7.3:21608708-21608727 MS.gene41838:intron 30.0%
TTTGTGATTGAAGGAATGTT+TGG + chr7.3:21607359-21607378 None:intergenic 30.0%
! AAATATGAGTTGACCAATGT+TGG + chr7.3:21607517-21607536 None:intergenic 30.0%
! AACAGAGTTACATAGTTTTC+AGG + chr7.3:21606231-21606250 None:intergenic 30.0%
! AATATGAGTTGACCAATGTT+GGG + chr7.3:21607516-21607535 None:intergenic 30.0%
! ATCCGTCATTTAACAGTTTT+GGG - chr7.3:21606906-21606925 MS.gene41838:CDS 30.0%
! CAACTCATATTTGTTACATG+TGG - chr7.3:21607525-21607544 MS.gene41838:intron 30.0%
! GCAATTTGAAATCAAGAAGA+GGG + chr7.3:21608885-21608904 None:intergenic 30.0%
! TATCCGTCATTTAACAGTTT+TGG - chr7.3:21606905-21606924 MS.gene41838:CDS 30.0%
! TATTTTCACCTCGAATAAAG+AGG - chr7.3:21608452-21608471 MS.gene41838:intron 30.0%
! TCATATTTGTTACATGTGGT+TGG - chr7.3:21607529-21607548 MS.gene41838:intron 30.0%
! TGCAATTTGAAATCAAGAAG+AGG + chr7.3:21608886-21608905 None:intergenic 30.0%
! TTGTTTTCACTGTTCTCATT+AGG - chr7.3:21606084-21606103 MS.gene41838:intron 30.0%
!! GAATTTTTCAGTTTCGTGTA+TGG + chr7.3:21608928-21608947 None:intergenic 30.0%
!! TTCTTGGTAATGTTATCCAT+TGG - chr7.3:21608835-21608854 MS.gene41838:intron 30.0%
!!! ACAATATTGGTTCTTTTGAC+AGG - chr7.3:21607956-21607975 MS.gene41838:CDS 30.0%
!!! ATGATGTTTTGGTATTAGAG+TGG - chr7.3:21606562-21606581 MS.gene41838:intron 30.0%
!!! CAATATTGGTTCTTTTGACA+GGG - chr7.3:21607957-21607976 MS.gene41838:CDS 30.0%
!!! GGTGTTCTGTTTTTTCTTTT+TGG - chr7.3:21606471-21606490 MS.gene41838:CDS 30.0%
AATCACCTACAAAACCAACT+GGG - chr7.3:21609128-21609147 MS.gene41838:intron 35.0%
AATGAAAGGCTTCTTTCACT+TGG - chr7.3:21608111-21608130 MS.gene41838:CDS 35.0%
AATGAATCACATAGACTCCT+CGG + chr7.3:21606425-21606444 None:intergenic 35.0%
ACAGTAGCATATGTGAACAT+AGG - chr7.3:21608777-21608796 MS.gene41838:intron 35.0%
ACATCATAGGTATTCCTGTT+GGG - chr7.3:21608808-21608827 MS.gene41838:intron 35.0%
ACGATTAAATCATTCGTTGC+AGG - chr7.3:21609243-21609262 MS.gene41838:CDS 35.0%
ATGAAAAAGGATGGATGGAA+AGG + chr7.3:21608246-21608265 None:intergenic 35.0%
ATTCATAGCAATGTTGTGTC+TGG - chr7.3:21607012-21607031 MS.gene41838:intron 35.0%
ATTGCCTTGTGATGAATGAA+AGG - chr7.3:21608097-21608116 MS.gene41838:CDS 35.0%
CTCCCAAAACTGTTAAATGA+CGG + chr7.3:21606911-21606930 None:intergenic 35.0%
CTTCTGATATGCTTTCATCT+TGG + chr7.3:21607272-21607291 None:intergenic 35.0%
GATGATATCACTTGGTTTCA+TGG - chr7.3:21608189-21608208 MS.gene41838:CDS 35.0%
GCATATGGTGCAAAAGAATA+TGG - chr7.3:21607141-21607160 MS.gene41838:intron 35.0%
GCTATGGTACAACACAATAT+TGG - chr7.3:21607943-21607962 MS.gene41838:CDS 35.0%
GTATCAAATGAGCTTGGTAA+AGG - chr7.3:21608321-21608340 MS.gene41838:intron 35.0%
TAAGGATGAGTTAATCTTGG+TGG - chr7.3:21607709-21607728 MS.gene41838:CDS 35.0%
TAATCACCTACAAAACCAAC+TGG - chr7.3:21609127-21609146 MS.gene41838:intron 35.0%
TACATCATAGGTATTCCTGT+TGG - chr7.3:21608807-21608826 MS.gene41838:intron 35.0%
TATTATGCAGTCTTGAGCTA+TGG - chr7.3:21607927-21607946 MS.gene41838:CDS 35.0%
TGAAAAAGGATGGATGGAAA+GGG + chr7.3:21608245-21608264 None:intergenic 35.0%
TGGGAAATGATGATATCACT+TGG - chr7.3:21608181-21608200 MS.gene41838:CDS 35.0%
TGTTCTTGCTTTGTGATTGA+AGG + chr7.3:21607368-21607387 None:intergenic 35.0%
TTATTCATGCATTCCTCTCT+TGG - chr7.3:21607421-21607440 MS.gene41838:intron 35.0%
! AAATACGAATTTGGGATTGC+TGG - chr7.3:21607456-21607475 MS.gene41838:intron 35.0%
! CAAGCTTTTGTTGGTCATAT+TGG - chr7.3:21606035-21606054 MS.gene41838:CDS 35.0%
! CAGATTCATTCAAGTTAGCA+CGG + chr7.3:21607903-21607922 None:intergenic 35.0%
! CAGTGCATTTGTTACATTGA+TGG + chr7.3:21607812-21607831 None:intergenic 35.0%
! TCACCCCTTATATGATGTTT+TGG - chr7.3:21606551-21606570 MS.gene41838:CDS 35.0%
!! AACATTTTCGATAGGGTATC+TGG - chr7.3:21609058-21609077 MS.gene41838:intron 35.0%
!!! ACATAGTTTTCAGGTAACAC+AGG + chr7.3:21606222-21606241 None:intergenic 35.0%
AACTGCACTTGTTCTTCTTC+CGG - chr7.3:21607209-21607228 MS.gene41838:intron 40.0%
ACACATATTGAAGACGTGTG+TGG - chr7.3:21606970-21606989 MS.gene41838:CDS 40.0%
ACAGTCTCAACATCAATGGA+TGG - chr7.3:21608161-21608180 MS.gene41838:CDS 40.0%
ACCATATGCTTGTCCACAAA+GGG + chr7.3:21607130-21607149 None:intergenic 40.0%
AGGGAACATGAAAAATGCTG+AGG - chr7.3:21607976-21607995 MS.gene41838:CDS 40.0%
AGTACTCACGAGAATACCAT+TGG + chr7.3:21606114-21606133 None:intergenic 40.0%
ATCTGGATGGGAATGTTGTT+TGG - chr7.3:21609075-21609094 MS.gene41838:intron 40.0%
ATTTCAACAGGAGTGGCAAT+TGG - chr7.3:21608738-21608757 MS.gene41838:intron 40.0%
CAAAAACAGAAAGGATCCGA+TGG + chr7.3:21608400-21608419 None:intergenic 40.0%
CAGTCTCAACATCAATGGAT+GGG - chr7.3:21608162-21608181 MS.gene41838:CDS 40.0%
CATCATAGGTATTCCTGTTG+GGG - chr7.3:21608809-21608828 MS.gene41838:intron 40.0%
GAAAAAGGATGGATGGAAAG+GGG + chr7.3:21608244-21608263 None:intergenic 40.0%
GAACACCATCATTGCATTCT+TGG - chr7.3:21607383-21607402 MS.gene41838:intron 40.0%
GAAGAAGAACAAGTGCAGTT+AGG + chr7.3:21607209-21607228 None:intergenic 40.0%
GAAGCCTTTCATTCATCACA+AGG + chr7.3:21608104-21608123 None:intergenic 40.0%
GCATATTGGATTCCCAACAT+TGG - chr7.3:21607501-21607520 MS.gene41838:intron 40.0%
GTTCGAGTATCAAATGAGCT+TGG - chr7.3:21608315-21608334 MS.gene41838:intron 40.0%
TCATTGTCAAAAGCCAAGAG+AGG + chr7.3:21607437-21607456 None:intergenic 40.0%
TGTTATCCATTGGCAAGTCA+AGG - chr7.3:21608845-21608864 MS.gene41838:intron 40.0%
TTGCAGGAAACATCTCTCTT+TGG - chr7.3:21607292-21607311 MS.gene41838:intron 40.0%
TTTCACCTCGAATAAAGAGG+TGG - chr7.3:21608455-21608474 MS.gene41838:intron 40.0%
! GAAAGCATATCAGAAGTTGC+AGG - chr7.3:21607276-21607295 MS.gene41838:intron 40.0%
! TAGTTTGTACCTGAGAGTAC+TGG + chr7.3:21608543-21608562 None:intergenic 40.0%
! TTTCGATAGGGTATCTGGAT+GGG - chr7.3:21609063-21609082 MS.gene41838:intron 40.0%
!! AGTGCTGCATAGAGTTTTAG+AGG + chr7.3:21606949-21606968 None:intergenic 40.0%
!! TGGGGTTTTGATGACTTTGT+AGG - chr7.3:21606606-21606625 MS.gene41838:intron 40.0%
!! TTTTCGATAGGGTATCTGGA+TGG - chr7.3:21609062-21609081 MS.gene41838:intron 40.0%
ACAACATTGCACCAGCTGAA+AGG + chr7.3:21607623-21607642 None:intergenic 45.0%
ACCCCAATCTTGACTCTCTT+AGG - chr7.3:21607246-21607265 MS.gene41838:intron 45.0%
ACCCTTTGTGGACAAGCATA+TGG - chr7.3:21607126-21607145 MS.gene41838:CDS 45.0%
AGCTGCCAAGAATGCAATGA+TGG + chr7.3:21607391-21607410 None:intergenic 45.0%
AGTGTTCAACCAGTACTCTC+AGG - chr7.3:21608531-21608550 MS.gene41838:intron 45.0%
ATCCATTGGCAAGTCAAGGT+AGG - chr7.3:21608849-21608868 MS.gene41838:intron 45.0%
ATTCCTGTTGGGGTTGTTCT+TGG - chr7.3:21608819-21608838 MS.gene41838:intron 45.0%
ATTGAGACACACCAAATCCG+AGG - chr7.3:21606405-21606424 MS.gene41838:intron 45.0%
CAACATTGCACCAGCTGAAA+GGG + chr7.3:21607622-21607641 None:intergenic 45.0%
CAAGACAAGCAAGTTCAACG+TGG + chr7.3:21606198-21606217 None:intergenic 45.0%
CACCATATGCTTGTCCACAA+AGG + chr7.3:21607131-21607150 None:intergenic 45.0%
GAAAGGGAAAGTTTGACGAC+AGG + chr7.3:21607606-21607625 None:intergenic 45.0%
GCCTAAGAGAGTCAAGATTG+GGG + chr7.3:21607250-21607269 None:intergenic 45.0%
GGCCTAAGAGAGTCAAGATT+GGG + chr7.3:21607251-21607270 None:intergenic 45.0%
GTCAAACTTTCCCTTTCAGC+TGG - chr7.3:21607609-21607628 MS.gene41838:intron 45.0%
GTTCTCATTAGGTTCGCCAA+TGG - chr7.3:21606095-21606114 MS.gene41838:intron 45.0%
TCACATAGACTCCTCGGATT+TGG + chr7.3:21606419-21606438 None:intergenic 45.0%
TGGCCTAAGAGAGTCAAGAT+TGG + chr7.3:21607252-21607271 None:intergenic 45.0%
TTACCAAGAACAACCCCAAC+AGG + chr7.3:21608825-21608844 None:intergenic 45.0%
TTGATCAGTACTGTCCACCT+TGG + chr7.3:21609302-21609321 None:intergenic 45.0%
TTTCAGCTGGTGCAATGTTG+TGG - chr7.3:21607622-21607641 MS.gene41838:intron 45.0%
!! TATCATCAGTGTCGACGTGT+AGG + chr7.3:21606324-21606343 None:intergenic 45.0%
!! TGCAAAGGCACTTCAGTTGA+AGG + chr7.3:21609000-21609019 None:intergenic 45.0%
!!! CTCATCCCAGTTGGTTTTGT+AGG + chr7.3:21609136-21609155 None:intergenic 45.0%
!! TTATTATATTATTAAAAAGA+AGG + chr7.3:21606172-21606191 None:intergenic 5.0%
AGGATGGATGGAAAGGGGAT+CGG + chr7.3:21608239-21608258 None:intergenic 50.0%
CAAAACCAACTGGGATGAGC+AGG - chr7.3:21609137-21609156 MS.gene41838:intron 50.0%
CACAACGATCGAGAACTTCG+CGG + chr7.3:21608358-21608377 None:intergenic 50.0%
CGATAATTCTCCGACAGCTG+CGG + chr7.3:21608481-21608500 None:intergenic 50.0%
GAGAAACCTTGCCAAGTCTC+AGG + chr7.3:21607558-21607577 None:intergenic 50.0%
GGGGTTGTGAAGACAAACAC+CGG + chr7.3:21607231-21607250 None:intergenic 50.0%
TAGCTCGCAAGCGTGTAAAC+AGG - chr7.3:21609272-21609291 MS.gene41838:CDS 50.0%
TCATACCTGCTCATCCCAGT+TGG + chr7.3:21609145-21609164 None:intergenic 50.0%
TGTAAACAGGTGGTCCAAGG+TGG - chr7.3:21609285-21609304 MS.gene41838:CDS 50.0%
TGTGACAGTGCTTACGTCGT+TGG - chr7.3:21608374-21608393 MS.gene41838:intron 50.0%
TTGGTTTCATGGCTGCAGCA+AGG - chr7.3:21608200-21608219 MS.gene41838:intron 50.0%
!! AGCCTACCTTGACTTGCCAA+TGG + chr7.3:21608854-21608873 None:intergenic 50.0%
!! CAGTGTCGACGTGTAGGTAT+CGG + chr7.3:21606318-21606337 None:intergenic 50.0%
ACAGGAGTGGCAATTGGAGC+AGG - chr7.3:21608744-21608763 MS.gene41838:intron 55.0%
CAGGAGTGGCAATTGGAGCA+GGG - chr7.3:21608745-21608764 MS.gene41838:intron 55.0%
CTCGCAAGCGTGTAAACAGG+TGG - chr7.3:21609275-21609294 MS.gene41838:CDS 55.0%
GCGTGTAAACAGGTGGTCCA+AGG - chr7.3:21609282-21609301 MS.gene41838:CDS 55.0%
GTGCTTACGTCGTTGGCCAT+CGG - chr7.3:21608381-21608400 MS.gene41838:intron 55.0%
GTTGGGAATGGCGACTGCAT+TGG - chr7.3:21607101-21607120 MS.gene41838:CDS 55.0%
TGCGGCCACCTCTTTATTCG+AGG + chr7.3:21608463-21608482 None:intergenic 55.0%
TGGTGTCCTGAGACTTGGCA+AGG - chr7.3:21607549-21607568 MS.gene41838:intron 55.0%
! ACTGCATTGGCGACCCTTTG+TGG - chr7.3:21607114-21607133 MS.gene41838:CDS 55.0%
! GTGGTTGGTGTCCTGAGACT+TGG - chr7.3:21607544-21607563 MS.gene41838:intron 55.0%
!! GTGTAGGTATCGGTGTGGTG+TGG + chr7.3:21606308-21606327 None:intergenic 55.0%
!! TCGACGTGTAGGTATCGGTG+TGG + chr7.3:21606313-21606332 None:intergenic 55.0%
AAAGAGGTGGCCGCAGCTGT+CGG - chr7.3:21608468-21608487 MS.gene41838:intron 60.0%
GAGTGGCAATTGGAGCAGGG+TGG - chr7.3:21608748-21608767 MS.gene41838:intron 60.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 21605969 21609351 21605969 ID=MS.gene41838
chr7.3 mRNA 21605969 21609351 21605969 ID=MS.gene41838.t1;Parent=MS.gene41838
chr7.3 exon 21609196 21609351 21609196 ID=MS.gene41838.t1.exon1;Parent=MS.gene41838.t1
chr7.3 CDS 21609196 21609351 21609196 ID=cds.MS.gene41838.t1;Parent=MS.gene41838.t1
chr7.3 exon 21607677 21608218 21607677 ID=MS.gene41838.t1.exon2;Parent=MS.gene41838.t1
chr7.3 CDS 21607677 21608218 21607677 ID=cds.MS.gene41838.t1;Parent=MS.gene41838.t1
chr7.3 exon 21607297 21607383 21607297 ID=MS.gene41838.t1.exon3;Parent=MS.gene41838.t1
chr7.3 CDS 21607297 21607383 21607297 ID=cds.MS.gene41838.t1;Parent=MS.gene41838.t1
chr7.3 exon 21607099 21607155 21607099 ID=MS.gene41838.t1.exon4;Parent=MS.gene41838.t1
chr7.3 CDS 21607099 21607155 21607099 ID=cds.MS.gene41838.t1;Parent=MS.gene41838.t1
chr7.3 exon 21606768 21607006 21606768 ID=MS.gene41838.t1.exon5;Parent=MS.gene41838.t1
chr7.3 CDS 21606768 21607006 21606768 ID=cds.MS.gene41838.t1;Parent=MS.gene41838.t1
chr7.3 exon 21606454 21606572 21606454 ID=MS.gene41838.t1.exon6;Parent=MS.gene41838.t1
chr7.3 CDS 21606454 21606572 21606454 ID=cds.MS.gene41838.t1;Parent=MS.gene41838.t1
chr7.3 exon 21606162 21606248 21606162 ID=MS.gene41838.t1.exon7;Parent=MS.gene41838.t1
chr7.3 CDS 21606162 21606248 21606162 ID=cds.MS.gene41838.t1;Parent=MS.gene41838.t1
chr7.3 exon 21605969 21606055 21605969 ID=MS.gene41838.t1.exon8;Parent=MS.gene41838.t1
chr7.3 CDS 21605969 21606055 21605969 ID=cds.MS.gene41838.t1;Parent=MS.gene41838.t1
Gene Sequence

>MS.gene41838

ATGTGGGTGGTTGCAGCACCAGCAATATTCACAAGATTTTCAACTTTTGGTATTCAAATTATTAGTCAAGCTTTTGTTGGTCATATTGGTTCAAGAGAACTCGCTGCTTTTGCTCTTGTTTTCACTGTTCTCATTAGGTTCGCCAATGGTATTCTCGTGAGTACTTCATTTTCTCATCATTTTTCAACTTTTTTCTTTGACCTTCTTTTTAATAATATAATAATAACCACGTTGAACTTGCTTGTCTTGTCCTGTGTTACCTGAAAACTATGTAACTCTGTTCATGTTTCACGTTGTCTCTCAAAATCTTTCAAACACAAATATTGACACTAGACACCACACCACACCGATACCTACACGTCGACACTGATGATAATTTGAGAGAATTACATACTTTAATGCAATCATATCTATCGGAAGCTGACACTTGTCTGATATTGAGACACACCAAATCCGAGGAGTCTATGTGATTCATTGCTCAAAACTTGTTAATTTTAAGGAAGGTGTTCTGTTTTTTCTTTTTGGTATAGATACTAGTAGCAGTACTTCTCTGTTTCTTCAGACAAAAGTTCAAAAAAAGTTTCACCCCTTATATGATGTTTTGGTATTAGAGTGGTGATTCTAGAGATTAATTGAATGGGGTTTTGATGACTTTGTAGGAGAAAGTTTCATTTCAATGATTATGATTATGGTGTATAACTGTATATTAGTAAAGGTTGCAGCTTTTGCACTTTTTCTATTAAAACATTTAAAATGTTGTCACTTTATTGGTGTGTGAACACTTTCCTTTGTATATTTTTGTTGAAGGACACTTGATAAAGATTTAAAAATTGAAACAATCGATAACTTTCATCTAGAAAAAGTTGTTTTAGCATGTTTCAATGAGTTGAATACAGAAGAAAAAGTTGTTTTTAAAAGAACTATGAACAGGAAAAATATCCGTCATTTAACAGTTTTGGGAGAAATGATTACAATTTCCTCTAAAACTCTATGCAGCACTTACACATATTGAAGACGTGTGTGGTTTTCGACACTGACACGACATTCATAGCAATGTTGTGTCTGGTGTCTATGCTTCATAGAACATACTAAGTACTAACACAAGTTAATTGTTTGTAAAATGAATATTGTAGTTGGGAATGGCGACTGCATTGGCGACCCTTTGTGGACAAGCATATGGTGCAAAAGAATATGGAATGATGGGAGTATATCTTCAAAGATCATGGATAGTTTTATTCCTAACTGCACTTGTTCTTCTTCCGGTGTTTGTCTTCACAACCCCAATCTTGACTCTCTTAGGCCAAGATGAAAGCATATCAGAAGTTGCAGGAAACATCTCTCTTTGGTCAATTCCAATTATGTTTGCTTTTATTGTCTCATTCACTTGCCAAACATTCCTTCAATCACAAAGCAAGAACACCATCATTGCATTCTTGGCAGCTTTTTCCATAATTATTCATGCATTCCTCTCTTGGCTTTTGACAATGAAATACGAATTTGGGATTGCTGGTGCAATGATTTCAACTATTTTGGCATATTGGATTCCCAACATTGGTCAACTCATATTTGTTACATGTGGTTGGTGTCCTGAGACTTGGCAAGGTTTCTCATTTTTAGCATTCAAAGATCTTTGGCCTGTCGTCAAACTTTCCCTTTCAGCTGGTGCAATGTTGTGGTGAGTTCTTTGCAAATGCAATTACTGATGACTTGATTTGAATTTCATTTGATGCATGTTTGAATTAAGGATGAGTTAATCTTGGTGGCATCGTAGTTTTGTTGAAGCTCATAAGTGTATCTTTTGTCAAAATCACGGCGATACAATGTGATTATGTCAAACTAACCATCAATGTAACAAATGCACTGAATCAATGAGCTTACTATTATGTCGTCCTTTATGGATAACATATTTTTTGTGTGAACAAATATATATGCCGTGCTAACTTGAATGAATCTGTTTATATTATGCAGTCTTGAGCTATGGTACAACACAATATTGGTTCTTTTGACAGGGAACATGAAAAATGCTGAGGTTGAAATTGATGCACTATCTATATGGTAATGCTTCTGTTCAGTAACACTTTTATTAAAATTTATGATTCTGTTTCTACTTTATGTTATTTGTTATTGTATTGCCTTGTGATGAATGAAAGGCTTCTTTCACTTGGCTTGCTAAAGATCAAATGTTATTATTAACAGTCTCAACATCAATGGATGGGAAATGATGATATCACTTGGTTTCATGGCTGCAGCAAGGTAATAACATTGTTCCGATCCCCTTTCCATCCATCCTTTTTCATCTTATATGCTTACTTACCATTGAAAATTTACATTTACTTATTGTGTAGTGTTCGAGTATCAAATGAGCTTGGTAAAGGAAGCGCGAAAGCCGCGAAGTTCTCGATCGTTGTGACAGTGCTTACGTCGTTGGCCATCGGATCCTTTCTGTTTTTGTTCTTCTTATTTTTTAGAGAAAGACTTGCTTATATTTTCACCTCGAATAAAGAGGTGGCCGCAGCTGTCGGAGAATTATCGCCTTTGTTATCGATCTCTATACTATTAAACAGTGTTCAACCAGTACTCTCAGGTACAAACTAGTATTTACAACATTTCCACTATGTGAATTAGTTTGATGAATTGGTTCAAGACTTGTGCAAATTAATCTTCAATGCTATATAACAACAGTTATACATTGAATTTGTCAGTTTTTCTCGTGTATGTATTTATACTTGTCAAAGAATATGGAAGAAATGAAAGCAAAAAGGTAATTTCATTTCAACAGGAGTGGCAATTGGAGCAGGGTGGCAAAGCACAGTAGCATATGTGAACATAGGTTGTTATTACATCATAGGTATTCCTGTTGGGGTTGTTCTTGGTAATGTTATCCATTGGCAAGTCAAGGTAGGCTTTTATCATCCCTCTTCTTGATTTCAAATTGCACTTATATTAAGCACTGATGCCATACACGAAACTGAAAAATTCAATTATTGAATGTTATACATGAGTTAATGTCGTGTCAGATACTCACACACCTTCAACTGAAGTGCCTTTGCATAAGTTATATATATGTATGCTTCCTTATTAATTAAACAAACATTTTCGATAGGGTATCTGGATGGGAATGTTGTTTGGAACATTGATTCAAACTATAGTTCTACTTATAATCACCTACAAAACCAACTGGGATGAGCAGGTATGATGACTTATTTTCCTCGTTAACAATATCTTAATAACCGACAATGTATAGTAATTAAATTCTTATAGATATACATCTAATACGATTAAATCATTCGTTGCAGGTGACTGTAGCTCGCAAGCGTGTAAACAGGTGGTCCAAGGTGGACAGTACTGATCAAGAAACAAAAACTAACTTAATTGAAAAATAG

Protein sequence

>MS.gene41838.t1

MWVVAAPAIFTRFSTFGIQIISQAFVGHIGSRELAAFALVFTVLIRFANGILLGMATALATLCGQAYGAKEYGMMGVYLQRSWIVLFLTALVLLPVFVFTTPILTLLGQDESISEVAGNISLWSIPIMFAFIVSFTCQTFLQSQSKNTIIAFLAAFSIIIHAFLSWLLTMKYEFGIAGAMISTILAYWIPNIGQLIFVTCGWCPETWQGFSFLAFKDLWPVVKLSLSAGAMLCLELWYNTILVLLTGNMKNAEVEIDALSICLNINGWEMMISLGFMAAASVRVSNELGKGSAKAAKFSIVVTVLTSLAIGSFLFLFFLFFRERLAYIFTSNKEVAAAVGELSPLLSISILLNSVQPVLSGVAIGAGWQSTVAYVNIGCYYIIGIPVGVVLGNVIHWQVKGIWMGMLFGTLIQTIVLLIITYKTNWDEQVTVARKRVNRWSKVDSTDQETKTNLIEK