AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene042536

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042536.t1 MTR_7g087400 98.140 484 9 0 1 484 1 484 0.0 961
MS.gene042536.t1 MTR_7g087370 86.094 489 39 1 1 489 1 460 0.0 819
MS.gene042536.t1 MTR_6g027200 73.673 490 123 3 6 489 9 498 0.0 731
MS.gene042536.t1 MTR_7g087410 70.287 488 142 2 3 487 2 489 0.0 709
MS.gene042536.t1 MTR_6g027190 71.633 490 129 3 3 489 4 486 0.0 680
MS.gene042536.t1 MTR_7g087410 72.250 400 110 1 89 487 1 400 0.0 608
MS.gene042536.t1 MTR_7g087430 73.367 398 105 1 89 485 1 398 0.0 590
MS.gene042536.t1 MTR_5g032720 50.000 488 236 3 1 480 1 488 4.89e-169 486
MS.gene042536.t1 MTR_3g099700 49.576 472 235 3 12 481 29 499 8.92e-162 468
MS.gene042536.t1 MTR_5g032750 48.203 473 243 2 11 481 17 489 1.15e-160 464
MS.gene042536.t1 MTR_1g021740 47.174 460 240 2 18 474 21 480 2.94e-150 438
MS.gene042536.t1 MTR_8g069470 46.070 458 246 1 30 486 50 507 5.04e-150 438
MS.gene042536.t1 MTR_3g099720 47.689 476 242 3 3 472 10 484 2.62e-147 430
MS.gene042536.t1 MTR_1g100180 46.336 464 246 2 25 486 38 500 5.50e-147 430
MS.gene042536.t1 MTR_2g022980 45.082 488 250 4 4 473 6 493 4.78e-144 422
MS.gene042536.t1 MTR_5g033100 47.265 457 236 2 31 482 57 513 6.44e-143 420
MS.gene042536.t1 MTR_4g048000 45.992 474 244 3 12 473 36 509 1.69e-141 417
MS.gene042536.t1 MTR_2g088400 45.570 474 246 3 12 473 24 497 2.46e-137 405
MS.gene042536.t1 MTR_2g088400 44.064 438 233 3 12 437 24 461 1.04e-116 351
MS.gene042536.t1 MTR_6g047640 38.958 480 281 4 10 479 5 482 1.26e-116 352
MS.gene042536.t1 MTR_6g047610 38.631 453 277 1 22 474 23 474 3.19e-114 345
MS.gene042536.t1 MTR_5g090290 41.542 467 264 3 20 479 31 495 1.91e-111 341
MS.gene042536.t1 MTR_6g047640 36.667 480 273 5 10 479 5 463 6.48e-109 331
MS.gene042536.t1 MTR_6g047590 36.947 452 284 1 22 473 23 473 4.15e-104 319
MS.gene042536.t1 MTR_8g063590 38.622 479 280 4 7 472 21 498 3.02e-103 318
MS.gene042536.t1 MTR_6g081410 35.146 478 304 4 5 478 2 477 1.48e-94 295
MS.gene042536.t1 MTR_6g081780 35.532 470 297 4 5 470 2 469 3.04e-91 286
MS.gene042536.t1 MTR_6g081300 34.989 463 295 4 25 483 5 465 2.83e-89 281
MS.gene042536.t1 MTR_7g082810 35.565 478 306 1 11 486 1 478 5.48e-88 278
MS.gene042536.t1 MTR_1g108810 34.130 460 295 4 12 465 14 471 1.14e-86 275
MS.gene042536.t1 MTR_5g087930 34.968 469 272 5 17 483 23 460 2.38e-84 268
MS.gene042536.t1 MTR_6g066380 35.892 443 277 4 33 470 31 471 2.91e-84 268
MS.gene042536.t1 MTR_6g081390 34.348 460 293 6 25 478 7 463 8.37e-84 266
MS.gene042536.t1 MTR_2g078930 37.609 460 273 3 13 461 20 476 6.33e-83 265
MS.gene042536.t1 MTR_2g079020 37.229 462 276 4 11 461 12 470 1.55e-82 264
MS.gene042536.t1 MTR_6g081400 33.921 454 291 6 25 472 10 460 1.83e-82 263
MS.gene042536.t1 MTR_6g081810 33.839 461 280 4 10 470 8 443 6.67e-82 261
MS.gene042536.t1 MTR_6g081240 33.860 443 287 4 25 463 5 445 1.28e-80 258
MS.gene042536.t1 MTR_8g106670 32.889 450 289 4 30 472 13 456 8.23e-79 254
MS.gene042536.t1 MTR_2g078970 36.842 456 274 4 17 461 12 464 1.46e-78 254
MS.gene042536.t1 MTR_1g108840 33.054 478 310 4 1 470 8 483 3.24e-78 253
MS.gene042536.t1 MTR_2g078960 38.444 437 261 2 30 461 33 466 5.67e-78 252
MS.gene042536.t1 MTR_6g004220 32.265 468 308 4 18 479 11 475 4.59e-76 247
MS.gene042536.t1 MTR_1g108990 32.762 467 312 1 6 470 1 467 2.35e-74 242
MS.gene042536.t1 MTR_6g004220 32.548 467 304 5 3 463 5 466 1.89e-73 241
MS.gene042536.t1 MTR_1g109060 33.758 471 301 3 6 470 1 466 1.93e-72 237
MS.gene042536.t1 MTR_1g109060 33.758 471 300 4 6 470 1 465 6.45e-71 234
MS.gene042536.t1 MTR_6g081310 33.047 466 272 8 25 470 5 450 3.40e-69 228
MS.gene042536.t1 MTR_7g082800 33.165 395 262 1 89 481 1 395 2.58e-67 221
MS.gene042536.t1 MTR_5g090280 33.412 425 238 9 89 481 1 412 5.14e-63 211
MS.gene042536.t1 MTR_3g111020 28.602 465 314 5 14 468 35 491 9.10e-63 214
MS.gene042536.t1 MTR_2g078990 37.966 295 171 4 174 461 4 293 2.95e-53 182
MS.gene042536.t1 MTR_5g067460 25.678 479 345 4 7 479 32 505 3.51e-52 186
MS.gene042536.t1 MTR_5g010830 27.416 445 313 4 30 468 65 505 4.02e-52 185
MS.gene042536.t1 MTR_1g101500 27.292 469 315 5 14 468 48 504 1.10e-51 184
MS.gene042536.t1 MTR_6g043810 26.200 500 340 6 8 483 3 497 4.86e-49 176
MS.gene042536.t1 MTR_6g043810 25.852 499 342 6 1 483 1 487 5.35e-49 176
MS.gene042536.t1 MTR_0039s0080 26.840 462 324 5 27 480 35 490 7.42e-49 176
MS.gene042536.t1 MTR_6g004220 30.026 383 259 4 18 394 18 397 4.61e-48 172
MS.gene042536.t1 MTR_4g027920 25.380 461 336 3 27 479 153 613 5.22e-46 169
MS.gene042536.t1 MTR_2g079030 41.026 195 115 0 267 461 319 513 3.35e-38 147
MS.gene042536.t1 MTR_6g088805 26.166 493 336 7 4 486 2 476 2.64e-36 140
MS.gene042536.t1 MTR_8g102430 26.562 448 277 9 30 460 23 435 1.79e-35 137
MS.gene042536.t1 MTR_5g011540 27.233 459 311 6 22 467 35 483 5.30e-33 131
MS.gene042536.t1 MTR_6g004220 28.221 326 217 6 3 322 5 319 6.80e-31 122
MS.gene042536.t1 MTR_2g435930 22.642 477 329 6 30 470 5 477 6.92e-31 125
MS.gene042536.t1 MTR_4g131290 50.909 55 27 0 102 156 13 67 3.06e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042536.t1 AT1G33110 66.189 488 161 3 2 485 4 491 0.0 673
MS.gene042536.t1 AT1G33100 64.108 482 172 1 5 485 7 488 0.0 658
MS.gene042536.t1 AT1G33090 63.093 485 175 3 5 485 7 491 0.0 632
MS.gene042536.t1 AT1G33080 62.397 484 178 2 5 484 7 490 0.0 626
MS.gene042536.t1 AT1G33080 63.931 463 163 2 5 463 7 469 0.0 612
MS.gene042536.t1 AT1G33110 67.250 400 127 3 2 397 4 403 0.0 552
MS.gene042536.t1 AT5G65380 50.737 475 231 3 2 474 9 482 1.82e-165 476
MS.gene042536.t1 AT5G44050 49.582 478 235 3 4 477 13 488 5.15e-165 476
MS.gene042536.t1 AT1G47530 46.458 480 250 3 1 474 1 479 2.12e-151 441
MS.gene042536.t1 AT4G00350 47.297 444 234 0 31 474 88 531 1.59e-150 441
MS.gene042536.t1 AT5G10420 47.510 482 246 5 4 482 12 489 1.85e-149 436
MS.gene042536.t1 AT1G12950 47.461 453 237 1 31 482 67 519 3.26e-144 424
MS.gene042536.t1 AT3G26590 47.523 444 232 1 31 473 45 488 6.15e-144 422
MS.gene042536.t1 AT4G25640 46.555 479 250 2 10 482 7 485 6.70e-141 414
MS.gene042536.t1 AT3G03620 44.255 470 261 1 15 483 21 490 1.54e-140 414
MS.gene042536.t1 AT3G03620 44.255 470 261 1 15 483 21 490 1.54e-140 414
MS.gene042536.t1 AT4G25640 46.555 479 250 2 10 482 7 485 2.22e-140 414
MS.gene042536.t1 AT1G11670 44.534 494 253 4 1 473 1 494 2.23e-140 413
MS.gene042536.t1 AT1G61890 45.553 461 245 2 19 473 31 491 4.82e-140 412
MS.gene042536.t1 AT5G38030 45.595 454 246 1 31 483 45 498 5.86e-139 409
MS.gene042536.t1 AT1G23300 46.187 459 242 2 31 488 44 498 1.70e-138 409
MS.gene042536.t1 AT5G17700 42.857 476 270 2 2 475 4 479 2.15e-138 408
MS.gene042536.t1 AT5G17700 42.857 476 270 2 2 475 4 479 2.15e-138 408
MS.gene042536.t1 AT3G21690 46.799 453 239 1 24 474 45 497 1.20e-136 404
MS.gene042536.t1 AT1G61890 44.444 468 252 3 5 464 15 482 3.23e-135 400
MS.gene042536.t1 AT1G47530 48.964 386 196 1 89 473 1 386 3.35e-131 386
MS.gene042536.t1 AT4G25640 47.319 429 220 2 10 432 7 435 1.05e-127 379
MS.gene042536.t1 AT3G26590 48.187 386 199 1 89 473 1 386 2.68e-126 374
MS.gene042536.t1 AT4G21910 40.956 481 261 4 15 473 19 498 1.89e-125 375
MS.gene042536.t1 AT4G21910 40.956 481 261 4 15 473 19 498 1.89e-125 375
MS.gene042536.t1 AT4G21910 42.082 461 260 3 19 473 41 500 1.91e-125 375
MS.gene042536.t1 AT4G21910 42.082 461 260 3 19 473 41 500 1.91e-125 375
MS.gene042536.t1 AT4G21903 44.131 426 233 4 51 473 73 496 1.71e-122 367
MS.gene042536.t1 AT4G21903 42.825 446 243 6 51 489 73 513 1.60e-119 360
MS.gene042536.t1 AT1G61890 44.186 430 234 2 19 442 31 460 5.64e-119 357
MS.gene042536.t1 AT3G59030 40.119 506 278 5 1 483 1 504 1.20e-117 355
MS.gene042536.t1 AT4G21903 44.845 388 210 3 89 473 1 387 3.29e-116 347
MS.gene042536.t1 AT5G17700 42.462 398 227 2 2 397 4 401 4.59e-110 332
MS.gene042536.t1 AT5G52450 35.269 465 295 2 25 485 20 482 1.11e-88 280
MS.gene042536.t1 AT2G34360 35.095 473 289 6 20 485 16 477 1.61e-86 274
MS.gene042536.t1 AT3G59030 37.890 417 235 4 1 394 1 416 1.30e-84 267
MS.gene042536.t1 AT1G73700 35.914 465 290 5 20 479 13 474 4.29e-83 265
MS.gene042536.t1 AT1G71140 33.913 460 294 3 17 470 12 467 2.09e-80 258
MS.gene042536.t1 AT1G66760 32.495 477 309 4 10 480 10 479 3.14e-76 247
MS.gene042536.t1 AT2G34360 31.933 476 266 4 16 485 12 435 1.24e-75 244
MS.gene042536.t1 AT1G15150 34.136 457 286 6 31 480 31 479 1.64e-74 243
MS.gene042536.t1 AT1G66760 32.826 460 296 4 10 463 10 462 9.77e-74 240
MS.gene042536.t1 AT1G15160 31.677 483 306 7 14 480 5 479 2.24e-72 238
MS.gene042536.t1 AT1G66780 34.742 426 274 2 48 470 52 476 2.49e-72 237
MS.gene042536.t1 AT2G04080 33.404 473 293 9 14 470 2 468 5.98e-72 236
MS.gene042536.t1 AT1G15170 33.402 482 302 8 1 470 1 475 3.28e-71 234
MS.gene042536.t1 AT2G04080 33.049 469 292 9 14 466 2 464 1.53e-69 229
MS.gene042536.t1 AT2G04040 33.482 448 284 7 31 470 27 468 2.35e-69 229
MS.gene042536.t1 AT2G04070 32.759 464 301 5 16 470 7 468 2.61e-69 229
MS.gene042536.t1 AT3G23560 33.260 454 292 2 19 461 18 471 2.19e-68 227
MS.gene042536.t1 AT2G04050 32.906 468 302 5 10 470 6 468 1.06e-67 225
MS.gene042536.t1 AT1G64820 30.942 446 300 4 30 470 28 470 3.67e-67 224
MS.gene042536.t1 AT3G23550 33.486 436 284 3 30 461 30 463 1.44e-66 222
MS.gene042536.t1 AT2G04100 31.637 452 299 4 25 470 24 471 9.08e-64 214
MS.gene042536.t1 AT1G15180 33.333 447 286 6 31 470 35 476 2.73e-63 213
MS.gene042536.t1 AT2G04090 31.556 450 290 6 31 470 30 471 1.96e-62 211
MS.gene042536.t1 AT2G04100 31.767 447 295 4 25 465 24 466 3.22e-62 210
MS.gene042536.t1 AT1G15150 34.783 368 228 5 120 480 1 363 1.51e-60 203
MS.gene042536.t1 AT1G15170 34.078 358 227 4 120 470 1 356 1.72e-58 197
MS.gene042536.t1 AT1G66760 32.335 334 224 1 132 463 1 334 2.84e-50 175
MS.gene042536.t1 AT2G38510 24.892 462 340 3 27 483 2 461 4.08e-50 178
MS.gene042536.t1 AT1G66760 30.691 391 258 4 10 394 10 393 1.84e-49 174
MS.gene042536.t1 AT3G23560 32.041 387 252 2 19 394 18 404 7.91e-48 171
MS.gene042536.t1 AT1G58340 24.944 449 327 3 30 472 57 501 3.41e-47 171
MS.gene042536.t1 AT4G29140 25.153 489 344 6 1 479 29 505 1.37e-41 156
MS.gene042536.t1 AT1G71870 24.206 504 342 9 7 483 7 497 2.33e-41 155
MS.gene042536.t1 AT5G19700 25.581 473 332 5 6 468 13 475 2.37e-40 152
MS.gene042536.t1 AT5G52050 24.886 438 287 6 55 467 59 479 5.57e-35 137
MS.gene042536.t1 AT4G23030 24.638 483 352 5 8 483 10 487 4.27e-33 132
MS.gene042536.t1 AT5G49130 25.667 487 334 8 11 478 12 489 6.93e-33 131
MS.gene042536.t1 AT1G15180 31.560 282 184 5 120 394 1 280 3.74e-29 119
MS.gene042536.t1 AT4G22790 25.219 456 307 11 50 489 49 486 6.32e-28 116
MS.gene042536.t1 AT2G04066 38.400 125 76 1 347 470 39 163 4.12e-24 99.4

Find 106 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTTATTGGATGCCAAATT+TGG 0.094262 7.4:-20477744 MS.gene042536:CDS
CTAGAAATCGTGTTAATAAA+TGG 0.175287 7.4:-20475494 MS.gene042536:CDS
TGGCCAAGTGCCACTAAAAT+TGG 0.210821 7.4:+20477995 None:intergenic
CATTTGCCACATCTGGATTT+GGG 0.227220 7.4:+20477017 None:intergenic
AAGTTCAAGTTTGGCCTTAA+TGG 0.236077 7.4:-20477788 MS.gene042536:CDS
AAAACAAGCTGCCCCAAATT+TGG 0.237889 7.4:+20477731 None:intergenic
ATCAAGCTTTCTTTATCTTC+TGG 0.246424 7.4:-20477638 MS.gene042536:CDS
TGTGATTATCATAAGCATTA+TGG 0.251121 7.4:+20475649 None:intergenic
GCATTTGCCACATCTGGATT+TGG 0.252616 7.4:+20477016 None:intergenic
CCATTGATGCTCTTGCTATA+TGG 0.272797 7.4:-20477426 MS.gene042536:intron
TGTTCTTGCTTTGTGCTTGT+AGG 0.291347 7.4:+20477879 None:intergenic
CAATCCTTCATTGGTCATAT+TGG 0.293119 7.4:-20478630 MS.gene042536:CDS
CAGGTTTGCAAATGGTATTC+TGG 0.301200 7.4:-20478562 MS.gene042536:intron
TGTTGAAAACCTATTGAATA+TGG 0.301753 7.4:+20478674 None:intergenic
ATAGGCTGCTATTACCTAAT+TGG 0.305303 7.4:-20476613 MS.gene042536:CDS
TTGATGTCATTGCACCATTA+AGG 0.308624 7.4:+20477774 None:intergenic
AACAGGCCAAAGATCTTTAA+AGG 0.330427 7.4:+20477661 None:intergenic
GCTTATTGGATGCCAAATTT+GGG 0.332361 7.4:-20477743 MS.gene042536:CDS
TGCAATGACATCAATCCTTT+TGG 0.332957 7.4:-20477765 MS.gene042536:CDS
GAAAATATTGCACAAGTTGC+TGG 0.335153 7.4:-20477968 MS.gene042536:CDS
CCAACTGCATTTGCCACATC+TGG 0.335474 7.4:+20477010 None:intergenic
TGTAAGCAAGTCTTCCTCTT+AGG 0.344861 7.4:+20477047 None:intergenic
GAGAAACCCTTCCATGTATC+AGG 0.346664 7.4:+20477692 None:intergenic
GTTTGGATTGGAATGTTGTT+TGG 0.348970 7.4:-20475686 MS.gene042536:CDS
TATCTTCTGGAGCTATGTTA+TGG 0.352221 7.4:-20477625 MS.gene042536:intron
TTAACTGTTAAGTTCAAGTT+TGG 0.352285 7.4:-20477797 MS.gene042536:CDS
TCTTCTTCATTTGCAAGTTA+AGG 0.355036 7.4:-20476563 MS.gene042536:intron
TCTTGATATTCTTCTTTAGT+TGG 0.358461 7.4:+20475428 None:intergenic
TTGGACACTGTTCATCAATA+TGG 0.379365 7.4:+20476961 None:intergenic
GATAAAGAAAGCTTGATAAC+AGG 0.397818 7.4:+20477644 None:intergenic
TTGTTATGACTGTCCTAGTC+AGG 0.399000 7.4:-20478581 MS.gene042536:CDS
CAGGCCCTGCCATATTCAAT+AGG 0.402161 7.4:-20478683 MS.gene042536:CDS
GGCTCTTCTTCCTCCTCTGA+AGG 0.408718 7.4:+20478753 None:intergenic
CCATATAGCAAGAGCATCAA+TGG 0.415111 7.4:+20477426 None:intergenic
CTCCGATAGGAATACCAATT+AGG 0.416553 7.4:+20476599 None:intergenic
TTTGTGCTTGTAGGAACATT+TGG 0.420861 7.4:+20477888 None:intergenic
TTGAAAATTGTAGTTGGGTA+TGG 0.421860 7.4:-20478155 MS.gene042536:intron
AAGGGCATAAGCAGCTAATT+CGG 0.440329 7.4:+20478602 None:intergenic
GTAGTTGCTCAATCCTTCAT+TGG 0.440406 7.4:-20478639 MS.gene042536:CDS
AAGAAGAGCCACTAAGGAAA+AGG 0.447419 7.4:-20478740 MS.gene042536:CDS
TTGCTGGAAGCATTTCAATA+TGG 0.449250 7.4:-20477952 MS.gene042536:CDS
TAGAAATCGTGTTAATAAAT+GGG 0.454565 7.4:-20475493 MS.gene042536:CDS
AGCATTTCAATATGGTCAAT+AGG 0.456375 7.4:-20477944 MS.gene042536:CDS
TTTGCAGCCTCAACATCAAT+GGG 0.465185 7.4:-20477306 MS.gene042536:intron
ACACTATGTGGACAAGCATA+TGG 0.467239 7.4:-20478118 MS.gene042536:CDS
ATAGGTGTTTCTGTTGGAGC+TGG 0.468391 7.4:-20476664 MS.gene042536:intron
GAAAACCTATTGAATATGGC+AGG 0.470460 7.4:+20478678 None:intergenic
GCTCTTCTTCCTCCTCTGAA+GGG 0.476165 7.4:+20478754 None:intergenic
TTGATCTTTCTGTTCCTAAG+AGG 0.477472 7.4:-20477061 MS.gene042536:CDS
AAGTGCCACTAAAATTGGTT+TGG 0.478153 7.4:+20478000 None:intergenic
GAGTGTATCTTCAAAGATCA+TGG 0.479506 7.4:-20478072 MS.gene042536:CDS
GTGTTTCTGTTGGAGCTGGC+TGG 0.479528 7.4:-20476660 MS.gene042536:CDS
AGCCACTAAGGAAAAGGGTA+TGG 0.482191 7.4:-20478734 MS.gene042536:CDS
AGTGTCCAACCTGTGCTCTC+TGG 0.488293 7.4:-20476947 MS.gene042536:intron
TTGGCATCCAATAAGCCAAA+AGG 0.492999 7.4:+20477750 None:intergenic
TAATCACATTTAAGACTGAC+TGG 0.493785 7.4:-20475634 MS.gene042536:CDS
GCAAAACAATATGATATGCT+TGG 0.495199 7.4:-20478094 MS.gene042536:CDS
AGGAGGAAGAAGAGCCACTA+AGG 0.500928 7.4:-20478746 MS.gene042536:CDS
TACCTAATTGGTATTCCTAT+CGG 0.507862 7.4:-20476601 MS.gene042536:CDS
AGAAGAGCCACTAAGGAAAA+GGG 0.507893 7.4:-20478739 MS.gene042536:CDS
TGAACCAATATGACCAATGA+AGG 0.509207 7.4:+20478626 None:intergenic
AAGAAGCTGTGGATAGTAGC+AGG 0.510220 7.4:-20478702 MS.gene042536:CDS
TTGGTTTCTTCGCTGCAGCT+AGG 0.512378 7.4:-20477264 MS.gene042536:intron
TGACAAAATGTCCTGATACA+TGG 0.517890 7.4:-20477703 MS.gene042536:CDS
TTTCCCACCCATTGATGTTG+AGG 0.520512 7.4:+20477299 None:intergenic
ATTCCTATCGGAGTTGTGCT+TGG 0.524605 7.4:-20476589 MS.gene042536:CDS
TTGTGAATAGGTGTTTCTGT+TGG 0.527931 7.4:-20476670 MS.gene042536:intron
GTCCTAGTCAGGTTTGCAAA+TGG 0.528064 7.4:-20478570 MS.gene042536:CDS
TGTTAATAAATGGGCTGTAG+TGG 0.537932 7.4:-20475484 MS.gene042536:CDS
GATTCTTCTAACAGGGAACA+TGG 0.541639 7.4:-20477464 MS.gene042536:CDS
ATGAATCAAACAACACATCA+AGG 0.547424 7.4:-20475455 MS.gene042536:CDS
AATTGGAAGAAGAAGAATTG+AGG 0.547786 7.4:+20478033 None:intergenic
CCAGATGTGGCAAATGCAGT+TGG 0.549172 7.4:-20477010 MS.gene042536:CDS
ATTTGCCACATCTGGATTTG+GGG 0.550933 7.4:+20477018 None:intergenic
CAAGAATAGCACAAATCCAA+TGG 0.555748 7.4:+20477081 None:intergenic
TAAGACTGACTGGGACAAGC+AGG 0.560914 7.4:-20475624 MS.gene042536:intron
GTTGTAGCATATGTCAACAT+AGG 0.569004 7.4:-20476631 MS.gene042536:CDS
TTGAAATTGAAACTGCTGCT+AGG 0.575665 7.4:+20477843 None:intergenic
GTTAGGGTGTCAAATGAACT+AGG 0.580896 7.4:-20477163 MS.gene042536:CDS
AAAATGTCCTGATACATGGA+AGG 0.587310 7.4:-20477699 MS.gene042536:CDS
GTGTCAAATGAACTAGGCAG+AGG 0.587372 7.4:-20477157 MS.gene042536:CDS
TACCATTTGCAAACCTGACT+AGG 0.588271 7.4:+20478568 None:intergenic
GCAGCCTCAACATCAATGGG+TGG 0.590413 7.4:-20477303 MS.gene042536:intron
GCCACTAAGGAAAAGGGTAT+GGG 0.595578 7.4:-20478733 MS.gene042536:CDS
TTACCAAGCACAACTCCGAT+AGG 0.598268 7.4:+20476586 None:intergenic
TAGCTGCAGCGAAGAAACCA+AGG 0.602642 7.4:+20477266 None:intergenic
CAGCCTCAACATCAATGGGT+GGG 0.609170 7.4:-20477302 MS.gene042536:CDS
CTTATTGGATGCCAAATTTG+GGG 0.612153 7.4:-20477742 MS.gene042536:CDS
TGGGAAATGATGATAGCCCT+TGG 0.617562 7.4:-20477283 MS.gene042536:CDS
TGACTAGGACAGTCATAACA+AGG 0.618469 7.4:+20478583 None:intergenic
GCATCAAAACCCTTCAGAGG+AGG 0.620658 7.4:-20478763 MS.gene042536:CDS
AAATATTTACCAGAGAGCAC+AGG 0.621828 7.4:+20476938 None:intergenic
ACTAGGCAGAGGGAGTTCCA+AGG 0.626189 7.4:-20477146 MS.gene042536:CDS
GGGAAGAAAGCAAGAAGCTG+TGG 0.627710 7.4:-20478713 MS.gene042536:CDS
TTTCACCCCAAATCCAGATG+TGG 0.632797 7.4:-20477023 MS.gene042536:CDS
TGTCAAATGAACTAGGCAGA+GGG 0.643173 7.4:-20477156 MS.gene042536:CDS
GCAGCATCAAAACCCTTCAG+AGG 0.649637 7.4:-20478766 MS.gene042536:CDS
AAATGTCCTGATACATGGAA+GGG 0.649772 7.4:-20477698 MS.gene042536:CDS
AATCACATTTAAGACTGACT+GGG 0.658771 7.4:-20475633 MS.gene042536:CDS
AAAACCTATTGAATATGGCA+GGG 0.658833 7.4:+20478679 None:intergenic
ATTTACCAGAGAGCACAGGT+TGG 0.672429 7.4:+20476942 None:intergenic
TGTGAGCACTGTTATGACAA+TGG 0.674257 7.4:+20477111 None:intergenic
AGCTGCAGCGAAGAAACCAA+GGG 0.675016 7.4:+20477267 None:intergenic
GACTAGGACAGTCATAACAA+GGG 0.709723 7.4:+20478584 None:intergenic
AGTGCATTAGAAACACTATG+TGG 0.716160 7.4:-20478130 MS.gene042536:CDS
AATATGGAGAATGATAACAA+AGG 0.716405 7.4:+20476977 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATTTACTAAATAACAT+AGG - chr7.4:20478106-20478125 MS.gene042536:CDS 10.0%
!! TATATTTGTCAAAAAATTAA+TGG + chr7.4:20478415-20478434 None:intergenic 10.0%
!! TTTATATATAAACAAAGTAA+CGG + chr7.4:20478134-20478153 None:intergenic 10.0%
!! ATATATACCAAATAGAAAAT+GGG - chr7.4:20478432-20478451 MS.gene042536:intron 15.0%
!! ATGCTTAAAATTATAAGAAA+CGG + chr7.4:20478691-20478710 None:intergenic 15.0%
!! CTCTTTATATTATATATATG+TGG + chr7.4:20478460-20478479 None:intergenic 15.0%
!! TAATTCATTTATCATTTACA+TGG - chr7.4:20477701-20477720 MS.gene042536:CDS 15.0%
!! TATATATACCAAATAGAAAA+TGG - chr7.4:20478431-20478450 MS.gene042536:intron 15.0%
!!! TAATAACATATGTATTTTAC+AGG - chr7.4:20478715-20478734 MS.gene042536:CDS 15.0%
!!! TCAATTTTTAAGATTATGTA+TGG - chr7.4:20476663-20476682 MS.gene042536:CDS 15.0%
!! AATGATTAAAGAGATATTGT+TGG - chr7.4:20478504-20478523 MS.gene042536:intron 20.0%
!! ATAACATATCAACATTACAT+TGG + chr7.4:20478085-20478104 None:intergenic 20.0%
!! CATGATTTCATAAAAATGAT+AGG + chr7.4:20478305-20478324 None:intergenic 20.0%
!! TAGAAATCGTGTTAATAAAT+GGG - chr7.4:20478748-20478767 MS.gene042536:CDS 20.0%
!!! ACAACATTTTTAGATGAATT+TGG + chr7.4:20477552-20477571 None:intergenic 20.0%
!!! ATTTTAGTCCTTAAGATTAT+AGG - chr7.4:20477394-20477413 MS.gene042536:intron 20.0%
!!! ATTTTTAGACATTTCATTCA+TGG + chr7.4:20478348-20478367 None:intergenic 20.0%
!!! CTATCATTTTTATGAAATCA+TGG - chr7.4:20478303-20478322 MS.gene042536:intron 20.0%
! AATATGGAGAATGATAACAA+AGG + chr7.4:20477267-20477286 None:intergenic 25.0%
! AGCAAATTGAAAATTGTAGT+TGG - chr7.4:20476080-20476099 MS.gene042536:intron 25.0%
! ATCTTGCAAGTGAAAAAATA+AGG - chr7.4:20476031-20476050 MS.gene042536:intron 25.0%
! CTAAAAATGTTGTTGTGAAT+AGG - chr7.4:20477559-20477578 MS.gene042536:intron 25.0%
! CTAGAAATCGTGTTAATAAA+TGG - chr7.4:20478747-20478766 MS.gene042536:CDS 25.0%
! CTTTAATCATTATGCGATAT+AGG + chr7.4:20478495-20478514 None:intergenic 25.0%
! GATGAAAAAATATGGTTGAT+AGG + chr7.4:20478012-20478031 None:intergenic 25.0%
! GCAAATTGAAAATTGTAGTT+GGG - chr7.4:20476081-20476100 MS.gene042536:intron 25.0%
! TCTATTCTAAATCTTCAATG+AGG + chr7.4:20478269-20478288 None:intergenic 25.0%
! TGTGATTATCATAAGCATTA+TGG + chr7.4:20478595-20478614 None:intergenic 25.0%
! TGTTGAAAACCTATTGAATA+TGG + chr7.4:20475570-20475589 None:intergenic 25.0%
!! ACTTTTACAGTCTTGAAATA+TGG - chr7.4:20476740-20476759 MS.gene042536:intron 25.0%
!! GGTTTGGTAAAAATGTAAAT+TGG + chr7.4:20476228-20476247 None:intergenic 25.0%
!! GTTTGTAATCAAAGTTTGTT+TGG - chr7.4:20476685-20476704 MS.gene042536:intron 25.0%
!! TTAACTGTTAAGTTCAAGTT+TGG - chr7.4:20476444-20476463 MS.gene042536:intron 25.0%
!! TTCAATAGGTTTTCAACATT+TGG - chr7.4:20475572-20475591 MS.gene042536:intron 25.0%
!! TTTTACCAAACCAATTTTAG+TGG - chr7.4:20476236-20476255 MS.gene042536:intron 25.0%
!!! ATTACATTTTTTGCAGTGTT+AGG - chr7.4:20477061-20477080 MS.gene042536:CDS 25.0%
!!! CAATACATGTTTTTATGTCA+TGG - chr7.4:20476418-20476437 MS.gene042536:intron 25.0%
!!! CTTTTTGGTAATTATGTCAT+TGG - chr7.4:20477909-20477928 MS.gene042536:CDS 25.0%
!!! TTACATTTTTTGCAGTGTTA+GGG - chr7.4:20477062-20477081 MS.gene042536:CDS 25.0%
AAAACCTATTGAATATGGCA+GGG + chr7.4:20475565-20475584 None:intergenic 30.0%
AATTGGAAGAAGAAGAATTG+AGG + chr7.4:20476211-20476230 None:intergenic 30.0%
ACAAATACAATTGCAGTTGA+TGG - chr7.4:20475962-20475981 MS.gene042536:intron 30.0%
ACAGACAACTAATATGTGTT+GGG - chr7.4:20477954-20477973 MS.gene042536:CDS 30.0%
AGCATTTCAATATGGTCAAT+AGG - chr7.4:20476297-20476316 MS.gene042536:intron 30.0%
ATAAGACTAACATGAAGCTA+TGG - chr7.4:20476715-20476734 MS.gene042536:intron 30.0%
ATATCAACATTACATTGGTC+AGG + chr7.4:20478080-20478099 None:intergenic 30.0%
ATCAAGCTTTCTTTATCTTC+TGG - chr7.4:20476603-20476622 MS.gene042536:CDS 30.0%
ATGAATCAAACAACACATCA+AGG - chr7.4:20478786-20478805 MS.gene042536:CDS 30.0%
CGATAATACTATTGTGATTG+AGG + chr7.4:20475921-20475940 None:intergenic 30.0%
CTATAATACAATTGCGATTG+AGG + chr7.4:20475788-20475807 None:intergenic 30.0%
CTGAAGGAGAATATTAGATA+AGG + chr7.4:20477431-20477450 None:intergenic 30.0%
GCAAAACAATATGATATGCT+TGG - chr7.4:20476147-20476166 MS.gene042536:intron 30.0%
GCAATTGTATTTGTGACATA+TGG + chr7.4:20475956-20475975 None:intergenic 30.0%
TACCTAATTGGTATTCCTAT+CGG - chr7.4:20477640-20477659 MS.gene042536:CDS 30.0%
TATCAACATTACATTGGTCA+GGG + chr7.4:20478079-20478098 None:intergenic 30.0%
TCTTCTTCATTTGCAAGTTA+AGG - chr7.4:20477678-20477697 MS.gene042536:CDS 30.0%
TCTTGTCAGTACTAAATGTT+AGG - chr7.4:20477034-20477053 MS.gene042536:CDS 30.0%
TTAGTCCTTAAGATTATAGG+TGG - chr7.4:20477397-20477416 MS.gene042536:intron 30.0%
TTCTAAATCTTCAATGAGGA+CGG + chr7.4:20478265-20478284 None:intergenic 30.0%
TTGAAAATTGTAGTTGGGTA+TGG - chr7.4:20476086-20476105 MS.gene042536:intron 30.0%
! AATCACATTTAAGACTGACT+GGG - chr7.4:20478608-20478627 MS.gene042536:CDS 30.0%
! ACCAAAAAGTGTAGTTGAAA+GGG + chr7.4:20477898-20477917 None:intergenic 30.0%
! CTTGTGCAATATTTTCATCT+TGG + chr7.4:20476269-20476288 None:intergenic 30.0%
! GATAAAGAAAGCTTGATAAC+AGG + chr7.4:20476600-20476619 None:intergenic 30.0%
! GTTTTCAACATTTGGTATCA+TGG - chr7.4:20475580-20475599 MS.gene042536:intron 30.0%
! GTTTTGTATTTGTGACATCA+AGG + chr7.4:20475822-20475841 None:intergenic 30.0%
! TAATCACATTTAAGACTGAC+TGG - chr7.4:20478607-20478626 MS.gene042536:CDS 30.0%
! TACCAAAAAGTGTAGTTGAA+AGG + chr7.4:20477899-20477918 None:intergenic 30.0%
! TTGTTGTTAGTGTAATCTGA+AGG + chr7.4:20477447-20477466 None:intergenic 30.0%
!! ATAGCTTCATGTTAGTCTTA+TGG + chr7.4:20476716-20476735 None:intergenic 30.0%
!! ATATTGTTGGTGCTGAAATT+GGG - chr7.4:20478517-20478536 MS.gene042536:intron 30.0%
!! TTTTGGCCTTTAAAGATCTT+TGG - chr7.4:20476574-20476593 MS.gene042536:CDS 30.0%
!!! ACAGTTTTGATTCTTCTAAC+AGG - chr7.4:20476769-20476788 MS.gene042536:intron 30.0%
!!! CAGTTTTGATTCTTCTAACA+GGG - chr7.4:20476770-20476789 MS.gene042536:intron 30.0%
AAAATGTCCTGATACATGGA+AGG - chr7.4:20476542-20476561 MS.gene042536:intron 35.0%
AAATACAAAACTGCGATCGA+CGG - chr7.4:20475831-20475850 MS.gene042536:intron 35.0%
AAATGTCCTGATACATGGAA+GGG - chr7.4:20476543-20476562 MS.gene042536:intron 35.0%
AACAGGCCAAAGATCTTTAA+AGG + chr7.4:20476583-20476602 None:intergenic 35.0%
ACCAATGACTAATCTCTTAC+AGG - chr7.4:20477841-20477860 MS.gene042536:CDS 35.0%
ACTTGCCACCTATAATCTTA+AGG + chr7.4:20477405-20477424 None:intergenic 35.0%
AGTGCATTAGAAACACTATG+TGG - chr7.4:20476111-20476130 MS.gene042536:intron 35.0%
ATAGGCTGCTATTACCTAAT+TGG - chr7.4:20477628-20477647 MS.gene042536:CDS 35.0%
ATCTAACTTACCACCTTTGT+TGG - chr7.4:20477979-20477998 MS.gene042536:CDS 35.0%
CAAGAATAGCACAAATCCAA+TGG + chr7.4:20477163-20477182 None:intergenic 35.0%
CAATCCTTCATTGGTCATAT+TGG - chr7.4:20475611-20475630 MS.gene042536:intron 35.0%
CAATGACTAATCTCTTACAG+GGG - chr7.4:20477843-20477862 MS.gene042536:CDS 35.0%
CACAGACAACTAATATGTGT+TGG - chr7.4:20477953-20477972 MS.gene042536:CDS 35.0%
CAGACAACTAATATGTGTTG+GGG - chr7.4:20477955-20477974 MS.gene042536:CDS 35.0%
CCAATGACTAATCTCTTACA+GGG - chr7.4:20477842-20477861 MS.gene042536:CDS 35.0%
CTTATTGGATGCCAAATTTG+GGG - chr7.4:20476499-20476518 MS.gene042536:intron 35.0%
GAAAACCTATTGAATATGGC+AGG + chr7.4:20475566-20475585 None:intergenic 35.0%
GAAAATATTGCACAAGTTGC+TGG - chr7.4:20476273-20476292 MS.gene042536:intron 35.0%
GACTACGATTTAAACGATTG+AGG + chr7.4:20475718-20475737 None:intergenic 35.0%
GACTCGTCGATGAAAAAATA+TGG + chr7.4:20478020-20478039 None:intergenic 35.0%
GAGATCCCACTAAATATAGT+CGG + chr7.4:20477875-20477894 None:intergenic 35.0%
GAGTGTATCTTCAAAGATCA+TGG - chr7.4:20476169-20476188 MS.gene042536:intron 35.0%
GCTTATTGGATGCCAAATTT+GGG - chr7.4:20476498-20476517 MS.gene042536:intron 35.0%
GTTGTAGCATATGTCAACAT+AGG - chr7.4:20477610-20477629 MS.gene042536:intron 35.0%
TAATGGAATCCAACCAATTG+CGG + chr7.4:20478398-20478417 None:intergenic 35.0%
TATTGTGATTGAGGTAGCAT+CGG + chr7.4:20475912-20475931 None:intergenic 35.0%
TCTAACTTACCACCTTTGTT+GGG - chr7.4:20477980-20477999 MS.gene042536:CDS 35.0%
TGAACCAATATGACCAATGA+AGG + chr7.4:20475618-20475637 None:intergenic 35.0%
TGACAAAATGTCCTGATACA+TGG - chr7.4:20476538-20476557 MS.gene042536:intron 35.0%
TTACATTGGTCAGGGTAAAT+TGG + chr7.4:20478071-20478090 None:intergenic 35.0%
TTGAAATTGAAACTGCTGCT+AGG + chr7.4:20476401-20476420 None:intergenic 35.0%
TTGATCTTTCTGTTCCTAAG+AGG - chr7.4:20477180-20477199 MS.gene042536:intron 35.0%
TTGATGTCATTGCACCATTA+AGG + chr7.4:20476470-20476489 None:intergenic 35.0%
TTGGACACTGTTCATCAATA+TGG + chr7.4:20477283-20477302 None:intergenic 35.0%
TTTGTGCTTGTAGGAACATT+TGG + chr7.4:20476356-20476375 None:intergenic 35.0%
! AAATATTTACCAGAGAGCAC+AGG + chr7.4:20477306-20477325 None:intergenic 35.0%
! AAGTGCCACTAAAATTGGTT+TGG + chr7.4:20476244-20476263 None:intergenic 35.0%
! AATGGAAAATTTTGCTGCCT+TGG + chr7.4:20477115-20477134 None:intergenic 35.0%
! ATCTCACCGACTATATTTAG+TGG - chr7.4:20477866-20477885 MS.gene042536:CDS 35.0%
! ATGGAAGGGTTTCTCATTTT+TGG - chr7.4:20476557-20476576 MS.gene042536:intron 35.0%
! CCAAAAAGTGTAGTTGAAAG+GGG + chr7.4:20477897-20477916 None:intergenic 35.0%
! GTTTGGATTGGAATGTTGTT+TGG - chr7.4:20478555-20478574 MS.gene042536:intron 35.0%
! TCTCACCGACTATATTTAGT+GGG - chr7.4:20477867-20477886 MS.gene042536:CDS 35.0%
! TGCAATGACATCAATCCTTT+TGG - chr7.4:20476476-20476495 MS.gene042536:intron 35.0%
! TGTAAGAGATTAGTCATTGG+TGG + chr7.4:20477842-20477861 None:intergenic 35.0%
! TGTGGATCCCATTTTCTATT+TGG + chr7.4:20478442-20478461 None:intergenic 35.0%
! TTGTGAATAGGTGTTTCTGT+TGG - chr7.4:20477571-20477590 MS.gene042536:intron 35.0%
!! AAACCAATTTTAGTGGCACT+TGG - chr7.4:20476243-20476262 MS.gene042536:intron 35.0%
!! AAGTTCAAGTTTGGCCTTAA+TGG - chr7.4:20476453-20476472 MS.gene042536:intron 35.0%
!! GATATTGTTGGTGCTGAAAT+TGG - chr7.4:20478516-20478535 MS.gene042536:intron 35.0%
!! TATCTTCTGGAGCTATGTTA+TGG - chr7.4:20476616-20476635 MS.gene042536:CDS 35.0%
!! TGTTAATAAATGGGCTGTAG+TGG - chr7.4:20478757-20478776 MS.gene042536:CDS 35.0%
!! TTGCTGGAAGCATTTCAATA+TGG - chr7.4:20476289-20476308 MS.gene042536:intron 35.0%
!!! CATCAATCCTTTTGGCTTAT+TGG - chr7.4:20476484-20476503 MS.gene042536:intron 35.0%
!!! GAAATTGGGTCACTTTTGTA+GGG - chr7.4:20478531-20478550 MS.gene042536:intron 35.0%
!!! TGAAATTGGGTCACTTTTGT+AGG - chr7.4:20478530-20478549 MS.gene042536:intron 35.0%
AAAACAAGCTGCCCCAAATT+TGG + chr7.4:20476513-20476532 None:intergenic 40.0%
AAGAAGAGCCACTAAGGAAA+AGG - chr7.4:20475501-20475520 MS.gene042536:CDS 40.0%
AATATTCCGTCTCGCTGTTA+CGG - chr7.4:20477518-20477537 MS.gene042536:intron 40.0%
AATTGCGATTGAGGTAGCAT+CGG + chr7.4:20475779-20475798 None:intergenic 40.0%
ACACTATGTGGACAAGCATA+TGG - chr7.4:20476123-20476142 MS.gene042536:intron 40.0%
AGAAGAGCCACTAAGGAAAA+GGG - chr7.4:20475502-20475521 MS.gene042536:CDS 40.0%
ATTTGCCACATCTGGATTTG+GGG + chr7.4:20477226-20477245 None:intergenic 40.0%
CAGGTTTGCAAATGGTATTC+TGG - chr7.4:20475679-20475698 MS.gene042536:CDS 40.0%
CATTTGCCACATCTGGATTT+GGG + chr7.4:20477227-20477246 None:intergenic 40.0%
CTAACTTACCACCTTTGTTG+GGG - chr7.4:20477981-20478000 MS.gene042536:CDS 40.0%
CTCCGATAGGAATACCAATT+AGG + chr7.4:20477645-20477664 None:intergenic 40.0%
GACTAGGACAGTCATAACAA+GGG + chr7.4:20475660-20475679 None:intergenic 40.0%
GATGTTTCGCACTAATACGA+TGG + chr7.4:20477820-20477839 None:intergenic 40.0%
GATTCTTCTAACAGGGAACA+TGG - chr7.4:20476777-20476796 MS.gene042536:intron 40.0%
GGCTTATTGGATGCCAAATT+TGG - chr7.4:20476497-20476516 MS.gene042536:intron 40.0%
GTAGTTGCTCAATCCTTCAT+TGG - chr7.4:20475602-20475621 MS.gene042536:intron 40.0%
TAACAGCGAGACGGAATATT+TGG + chr7.4:20477518-20477537 None:intergenic 40.0%
TACCATTTGCAAACCTGACT+AGG + chr7.4:20475676-20475695 None:intergenic 40.0%
TGACTAGGACAGTCATAACA+AGG + chr7.4:20475661-20475680 None:intergenic 40.0%
TGGTCAGGGTAAATTGGATT+TGG + chr7.4:20478065-20478084 None:intergenic 40.0%
TGTAAGCAAGTCTTCCTCTT+AGG + chr7.4:20477197-20477216 None:intergenic 40.0%
TGTCAAATGAACTAGGCAGA+GGG - chr7.4:20477085-20477104 MS.gene042536:CDS 40.0%
TGTTCTTGCTTTGTGCTTGT+AGG + chr7.4:20476365-20476384 None:intergenic 40.0%
TTGGCATCCAATAAGCCAAA+AGG + chr7.4:20476494-20476513 None:intergenic 40.0%
TTGTCAGTATCAACCGCAAT+TGG - chr7.4:20478382-20478401 MS.gene042536:intron 40.0%
TTGTTATGACTGTCCTAGTC+AGG - chr7.4:20475660-20475679 MS.gene042536:CDS 40.0%
TTTGCAGCCTCAACATCAAT+GGG - chr7.4:20476935-20476954 MS.gene042536:intron 40.0%
! AAGGGCATAAGCAGCTAATT+CGG + chr7.4:20475642-20475661 None:intergenic 40.0%
! CCATTGATGCTCTTGCTATA+TGG - chr7.4:20476815-20476834 MS.gene042536:intron 40.0%
! CCCCTTTCAACTACACTTTT+TGG - chr7.4:20477894-20477913 MS.gene042536:CDS 40.0%
! CCCTGTAAGAGATTAGTCAT+TGG + chr7.4:20477845-20477864 None:intergenic 40.0%
! GTGCTCACATCATTTTCCAT+TGG - chr7.4:20477144-20477163 MS.gene042536:CDS 40.0%
! GTTAGGGTGTCAAATGAACT+AGG - chr7.4:20477078-20477097 MS.gene042536:CDS 40.0%
! TGTGAGCACTGTTATGACAA+TGG + chr7.4:20477133-20477152 None:intergenic 40.0%
! TTTTGCAGCCTCAACATCAA+TGG - chr7.4:20476934-20476953 MS.gene042536:intron 40.0%
!! ACCATTGATTTGAGATCCGA+CGG - chr7.4:20477491-20477510 MS.gene042536:CDS 40.0%
!! CCATATAGCAAGAGCATCAA+TGG + chr7.4:20476818-20476837 None:intergenic 40.0%
!! CTTTTGTAGGGTGTTTGGAT+TGG - chr7.4:20478543-20478562 MS.gene042536:intron 40.0%
AAGAAGCTGTGGATAGTAGC+AGG - chr7.4:20475539-20475558 MS.gene042536:intron 45.0%
ACCGTCGGATCTCAAATCAA+TGG + chr7.4:20477495-20477514 None:intergenic 45.0%
AGACGGAATATTTGGACCGT+CGG + chr7.4:20477510-20477529 None:intergenic 45.0%
AGCCACTAAGGAAAAGGGTA+TGG - chr7.4:20475507-20475526 MS.gene042536:CDS 45.0%
ATTCCTATCGGAGTTGTGCT+TGG - chr7.4:20477652-20477671 MS.gene042536:CDS 45.0%
CAGTATCAACCGCAATTGGT+TGG - chr7.4:20478386-20478405 MS.gene042536:intron 45.0%
GAGAAACCCTTCCATGTATC+AGG + chr7.4:20476552-20476571 None:intergenic 45.0%
GCATTTGCCACATCTGGATT+TGG + chr7.4:20477228-20477247 None:intergenic 45.0%
GTCCTAGTCAGGTTTGCAAA+TGG - chr7.4:20475671-20475690 MS.gene042536:CDS 45.0%
GTGTCAAATGAACTAGGCAG+AGG - chr7.4:20477084-20477103 MS.gene042536:CDS 45.0%
TGGGAAATGATGATAGCCCT+TGG - chr7.4:20476958-20476977 MS.gene042536:CDS 45.0%
TTACCAAGCACAACTCCGAT+AGG + chr7.4:20477658-20477677 None:intergenic 45.0%
TTTCACCCCAAATCCAGATG+TGG - chr7.4:20477218-20477237 MS.gene042536:intron 45.0%
TTTCCCACCCATTGATGTTG+AGG + chr7.4:20476945-20476964 None:intergenic 45.0%
! ATAGGTGTTTCTGTTGGAGC+TGG - chr7.4:20477577-20477596 MS.gene042536:intron 45.0%
! ATTTACCAGAGAGCACAGGT+TGG + chr7.4:20477302-20477321 None:intergenic 45.0%
! GCCACTAAGGAAAAGGGTAT+GGG - chr7.4:20475508-20475527 MS.gene042536:intron 45.0%
! TCCCATACCCTTTTCCTTAG+TGG + chr7.4:20475512-20475531 None:intergenic 45.0%
! TGGCCAAGTGCCACTAAAAT+TGG + chr7.4:20476249-20476268 None:intergenic 45.0%
!! AAGGGTTTTGATGCTGCAGA+AGG + chr7.4:20475472-20475491 None:intergenic 45.0%
!!! GGTCACTTTTGTAGGGTGTT+TGG - chr7.4:20478538-20478557 MS.gene042536:intron 45.0%
!!! ACATTATTTATAATTTTTTT+TGG - chr7.4:20477791-20477810 MS.gene042536:CDS 5.0%
AGCTGCAGCGAAGAAACCAA+GGG + chr7.4:20476977-20476996 None:intergenic 50.0%
AGGAGGAAGAAGAGCCACTA+AGG - chr7.4:20475495-20475514 MS.gene042536:CDS 50.0%
CAGCCTCAACATCAATGGGT+GGG - chr7.4:20476939-20476958 MS.gene042536:intron 50.0%
CAGGCCCTGCCATATTCAAT+AGG - chr7.4:20475558-20475577 MS.gene042536:intron 50.0%
CCAACTGCATTTGCCACATC+TGG + chr7.4:20477234-20477253 None:intergenic 50.0%
CCAGATGTGGCAAATGCAGT+TGG - chr7.4:20477231-20477250 MS.gene042536:intron 50.0%
GATAGGAGAGACCCCAACAA+AGG + chr7.4:20477995-20478014 None:intergenic 50.0%
GCAGCATCAAAACCCTTCAG+AGG - chr7.4:20475475-20475494 MS.gene042536:CDS 50.0%
GCATCAAAACCCTTCAGAGG+AGG - chr7.4:20475478-20475497 MS.gene042536:CDS 50.0%
GCTCTTCTTCCTCCTCTGAA+GGG + chr7.4:20475490-20475509 None:intergenic 50.0%
GGGAAGAAAGCAAGAAGCTG+TGG - chr7.4:20475528-20475547 MS.gene042536:intron 50.0%
TAAGACTGACTGGGACAAGC+AGG - chr7.4:20478617-20478636 MS.gene042536:CDS 50.0%
TAGCTGCAGCGAAGAAACCA+AGG + chr7.4:20476978-20476997 None:intergenic 50.0%
TCTCTACCGTAACAGCGAGA+CGG + chr7.4:20477527-20477546 None:intergenic 50.0%
TTGGTTTCTTCGCTGCAGCT+AGG - chr7.4:20476977-20476996 MS.gene042536:CDS 50.0%
ACTAGGCAGAGGGAGTTCCA+AGG - chr7.4:20477095-20477114 MS.gene042536:CDS 55.0%
AGGAGAGACCCCAACAAAGG+TGG + chr7.4:20477992-20478011 None:intergenic 55.0%
AGTGTCCAACCTGTGCTCTC+TGG - chr7.4:20477294-20477313 MS.gene042536:CDS 55.0%
GCAGCCTCAACATCAATGGG+TGG - chr7.4:20476938-20476957 MS.gene042536:intron 55.0%
GGCTCTTCTTCCTCCTCTGA+AGG + chr7.4:20475491-20475510 None:intergenic 55.0%
! GTGTTTCTGTTGGAGCTGGC+TGG - chr7.4:20477581-20477600 MS.gene042536:intron 55.0%
! TGCGATTGAGGTAGCATCGG+TGG + chr7.4:20475776-20475795 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 20475443 20478820 20475443 ID=MS.gene042536
chr7.4 mRNA 20475443 20478820 20475443 ID=MS.gene042536.t1;Parent=MS.gene042536
chr7.4 exon 20478563 20478820 20478563 ID=MS.gene042536.t1.exon1;Parent=MS.gene042536.t1
chr7.4 CDS 20478563 20478820 20478563 ID=cds.MS.gene042536.t1;Parent=MS.gene042536.t1
chr7.4 exon 20477626 20478164 20477626 ID=MS.gene042536.t1.exon2;Parent=MS.gene042536.t1
chr7.4 CDS 20477626 20478164 20477626 ID=cds.MS.gene042536.t1;Parent=MS.gene042536.t1
chr7.4 exon 20477427 20477513 20477427 ID=MS.gene042536.t1.exon3;Parent=MS.gene042536.t1
chr7.4 CDS 20477427 20477513 20477427 ID=cds.MS.gene042536.t1;Parent=MS.gene042536.t1
chr7.4 exon 20477265 20477321 20477265 ID=MS.gene042536.t1.exon4;Parent=MS.gene042536.t1
chr7.4 CDS 20477265 20477321 20477265 ID=cds.MS.gene042536.t1;Parent=MS.gene042536.t1
chr7.4 exon 20476948 20477186 20476948 ID=MS.gene042536.t1.exon5;Parent=MS.gene042536.t1
chr7.4 CDS 20476948 20477186 20476948 ID=cds.MS.gene042536.t1;Parent=MS.gene042536.t1
chr7.4 exon 20476564 20476682 20476564 ID=MS.gene042536.t1.exon6;Parent=MS.gene042536.t1
chr7.4 CDS 20476564 20476682 20476564 ID=cds.MS.gene042536.t1;Parent=MS.gene042536.t1
chr7.4 exon 20475625 20475711 20475625 ID=MS.gene042536.t1.exon7;Parent=MS.gene042536.t1
chr7.4 CDS 20475625 20475711 20475625 ID=cds.MS.gene042536.t1;Parent=MS.gene042536.t1
chr7.4 exon 20475443 20475526 20475443 ID=MS.gene042536.t1.exon8;Parent=MS.gene042536.t1
chr7.4 CDS 20475443 20475526 20475443 ID=cds.MS.gene042536.t1;Parent=MS.gene042536.t1
Gene Sequence

>MS.gene042536

ATGGGATCAGAAGAACTAAACAAGAACCTTCTGCAGCATCAAAACCCTTCAGAGGAGGAAGAAGAGCCACTAAGGAAAAGGGTATGGGAAGAAAGCAAGAAGCTGTGGATAGTAGCAGGCCCTGCCATATTCAATAGGTTTTCAACATTTGGTATCATGGTAGTTGCTCAATCCTTCATTGGTCATATTGGTTCAACCGAATTAGCTGCTTATGCCCTTGTTATGACTGTCCTAGTCAGGTTTGCAAATGGTATTCTGGTAAGTCAATTGTTCCTCAATCGTTTAAATCGTAGTCGCAATTCTGATTTTGCAAAGAATCGTGATCAAATACCACCGATGCTACCTCAATCGCAATTGTATTATAGACATAAAAAAACCTTGATGTCACAAATACAAAACTGCGATCGACGGCAAGTTATGAAAATTTTGCTTTAATTAATAATCATTATGTATTCATATCTTATCGCCGATGCTACCTCAATCACAATAGTATTATCGATATAAAAAAAACCATATGTCACAAATACAATTGCAGTTGATGGCAATTTATGAAAATTTTGCTTTGATAAATAGTCTTTATGTATTCATATCTTGCAAGTGAAAAAATAAGGTAAAATTATTTACAATGTTTTTTATGAGCAAATTGAAAATTGTAGTTGGGTATGGCAAGTGCATTAGAAACACTATGTGGACAAGCATATGGAGCAAAACAATATGATATGCTTGGAGTGTATCTTCAAAGATCATGGATAGTTATATTCTTAACCTCAATTCTTCTTCTTCCAATTTACATTTTTACCAAACCAATTTTAGTGGCACTTGGCCAAGATGAAAATATTGCACAAGTTGCTGGAAGCATTTCAATATGGTCAATAGGTATAGTATTTGCTTTCTCTGCATCATTCACTTGCCAAATGTTCCTACAAGCACAAAGCAAGAACAAGATTATTGCTTACCTAGCAGCAGTTTCAATTTCAATACATGTTTTTATGTCATGGCTTTTAACTGTTAAGTTCAAGTTTGGCCTTAATGGTGCAATGACATCAATCCTTTTGGCTTATTGGATGCCAAATTTGGGGCAGCTTGTTTTTATCATGACAAAATGTCCTGATACATGGAAGGGTTTCTCATTTTTGGCCTTTAAAGATCTTTGGCCTGTTATCAAGCTTTCTTTATCTTCTGGAGCTATGTTATGGTAAGAATTTGAGCAATTTTCATAATCAATTTTTAAGATTATGTATGGTTTGTAATCAAAGTTTGTTTGGATGAACCATAAGACTAACATGAAGCTATGGTTACTTTTACAGTCTTGAAATATGGTACAACACAGTTTTGATTCTTCTAACAGGGAACATGGAAAATGCTGAGATTTCCATTGATGCTCTTGCTATATGGTACTATATCTCTCATTATCATTCTTACTTTTACTTCAAAATTTAGCATTAAGAGTCATATTGACACTAATCTATTGATTTAATAAAATTATATCATTTTTGCAGCCTCAACATCAATGGGTGGGAAATGATGATAGCCCTTGGTTTCTTCGCTGCAGCTAGGTACATCATTGTGATCACAATCTTATTGAGAAATTTCTTGTCAGTACTAAATGTTAGGCTAAATTACATTTTTTGCAGTGTTAGGGTGTCAAATGAACTAGGCAGAGGGAGTTCCAAGGCAGCAAAATTTTCCATTGTCATAACAGTGCTCACATCATTTTCCATTGGATTTGTGCTATTCTTGATCTTTCTGTTCCTAAGAGGAAGACTTGCTTACATTTTCACCCCAAATCCAGATGTGGCAAATGCAGTTGGAGATCTATCACCTTTGTTATCATTCTCCATATTGATGAACAGTGTCCAACCTGTGCTCTCTGGTAAATATTTACATCATAACTATTATTTACTATATTGTTTATTGTTTCAATTTATTTTGTTACATTTCTTAAACTTTAATTTTAGTCCTTAAGATTATAGGTGGCAAGTGAACCTTATCTAATATTCTCCTTCAGATTACACTAACAACAAATTAATTAATTATAAACAATCACAACCATTGATTTGAGATCCGACGGTCCAAATATTCCGTCTCGCTGTTACGGTAGAGAATCCAAATTCATCTAAAAATGTTGTTGTGAATAGGTGTTTCTGTTGGAGCTGGCTGGCAAAGTGTTGTAGCATATGTCAACATAGGCTGCTATTACCTAATTGGTATTCCTATCGGAGTTGTGCTTGGTAATCTTCTTCATTTGCAAGTTAAGGTAATTCATTTATCATTTACATGGAAAAAGTTACTTTGCACAAATGTGAAGAGTGAAATATCAGTAATACTAGTATACTCTTTACTTCGCTACATTATTTATAATTTTTTTTGGTAACCATCGTATTAGTGCGAAACATCCACCAATGACTAATCTCTTACAGGGGATCTCACCGACTATATTTAGTGGGATCTCCCCTTTCAACTACACTTTTTGGTAATTATGTCATTGGTGCGAAGTATTTATCGTCTTTCACAGACAACTAATATGTGTTGGGGAATCTAACTTACCACCTTTGTTGGGGTCTCTCCTATCAACCATATTTTTTCATCGACGAGTCTCGAACGTGAGATCTTGCTTATCCAAATCCAATTTACCCTGACCAATGTAATGTTGATATGTTATTTATAATTTACTAAATAACATAGGTTCCGTTACTTTGTTTATATATAAAAAATCAGATCAAATGAGATAATAATATATATGATTATACTTTCAATTACTTTATGTTAACATGCATTCAGTGTCAATGTGTGTAAGCACTTCACACGATATATATGTTCCGTCCTCATTGAAGATTTAGAATAGAATTTAACGTGAAACCTATCATTTTTATGAAATCATGGACTAAAACTCATGTCAGTACCATGAATGAAATGTCTAAAAATTATAAGTATACTTTTTGTCAGTATCAACCGCAATTGGTTGGATTCCATTAATTTTTTGACAAATATATATACCAAATAGAAAATGGGATCCACATATATATAATATAAAGAGAGATTAGTGCTTCCTATATCGCATAATGATTAAAGAGATATTGTTGGTGCTGAAATTGGGTCACTTTTGTAGGGTGTTTGGATTGGAATGTTGTTTGGAACTTTTGTTCAAACCATAATGCTTATGATAATCACATTTAAGACTGACTGGGACAAGCAGGTATTAGTCAATTTACTATATTCTCTATAATTGTGAAATTGATTGATATCCGTTTCTTATAATTTTAAGCATCTAATAATAACATATGTATTTTACAGGTTGAGATTGCTAGAAATCGTGTTAATAAATGGGCTGTAGTGGAGAATGATGAATCAAACAACACATCAAGGATATCCAACTAA
Protein sequence

>MS.gene042536.t1

MGSEELNKNLLQHQNPSEEEEEPLRKRVWEESKKLWIVAGPAIFNRFSTFGIMVVAQSFIGHIGSTELAAYALVMTVLVRFANGILLGMASALETLCGQAYGAKQYDMLGVYLQRSWIVIFLTSILLLPIYIFTKPILVALGQDENIAQVAGSISIWSIGIVFAFSASFTCQMFLQAQSKNKIIAYLAAVSISIHVFMSWLLTVKFKFGLNGAMTSILLAYWMPNLGQLVFIMTKCPDTWKGFSFLAFKDLWPVIKLSLSSGAMLCLEIWYNTVLILLTGNMENAEISIDALAICLNINGWEMMIALGFFAAASVRVSNELGRGSSKAAKFSIVITVLTSFSIGFVLFLIFLFLRGRLAYIFTPNPDVANAVGDLSPLLSFSILMNSVQPVLSGVSVGAGWQSVVAYVNIGCYYLIGIPIGVVLGNLLHLQVKGVWIGMLFGTFVQTIMLMIITFKTDWDKQVEIARNRVNKWAVVENDESNNTSRISN