AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene013874

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene013874.t1 MTR_7g087400 97.934 484 10 0 1 484 1 484 0.0 961
MS.gene013874.t1 MTR_7g087370 85.890 489 40 1 1 489 1 460 0.0 818
MS.gene013874.t1 MTR_6g027200 73.878 490 122 3 6 489 9 498 0.0 732
MS.gene013874.t1 MTR_7g087410 70.492 488 141 2 3 487 2 489 0.0 710
MS.gene013874.t1 MTR_6g027190 71.837 490 128 3 3 489 4 486 0.0 681
MS.gene013874.t1 MTR_7g087410 72.500 400 109 1 89 487 1 400 0.0 608
MS.gene013874.t1 MTR_7g087430 73.618 398 104 1 89 485 1 398 0.0 591
MS.gene013874.t1 MTR_5g032720 50.000 488 236 3 1 480 1 488 5.95e-169 486
MS.gene013874.t1 MTR_3g099700 49.576 472 235 3 12 481 29 499 1.41e-161 467
MS.gene013874.t1 MTR_5g032750 48.203 473 243 2 11 481 17 489 1.56e-160 464
MS.gene013874.t1 MTR_1g021740 47.174 460 240 2 18 474 21 480 2.12e-150 438
MS.gene013874.t1 MTR_8g069470 45.852 458 247 1 30 486 50 507 7.78e-150 437
MS.gene013874.t1 MTR_3g099720 47.479 476 243 3 3 472 10 484 5.61e-147 429
MS.gene013874.t1 MTR_1g100180 46.121 464 247 2 25 486 38 500 8.68e-147 429
MS.gene013874.t1 MTR_2g022980 44.877 488 251 4 4 473 6 493 6.07e-144 422
MS.gene013874.t1 MTR_5g033100 47.265 457 236 2 31 482 57 513 6.59e-143 420
MS.gene013874.t1 MTR_4g048000 45.781 474 245 3 12 473 36 509 2.41e-141 416
MS.gene013874.t1 MTR_2g088400 45.781 474 245 3 12 473 24 497 1.40e-137 406
MS.gene013874.t1 MTR_2g088400 44.292 438 232 3 12 437 24 461 7.42e-117 352
MS.gene013874.t1 MTR_6g047640 39.167 480 280 4 10 479 5 482 8.55e-117 352
MS.gene013874.t1 MTR_6g047610 38.852 453 276 1 22 474 23 474 2.14e-114 346
MS.gene013874.t1 MTR_5g090290 41.542 467 264 3 20 479 31 495 1.68e-111 342
MS.gene013874.t1 MTR_6g047640 36.875 480 272 5 10 479 5 463 4.39e-109 332
MS.gene013874.t1 MTR_6g047590 37.168 452 283 1 22 473 23 473 2.67e-104 320
MS.gene013874.t1 MTR_8g063590 38.831 479 279 4 7 472 21 498 1.57e-103 319
MS.gene013874.t1 MTR_6g081410 34.728 478 306 4 5 478 2 477 1.60e-94 295
MS.gene013874.t1 MTR_6g081780 35.106 470 299 4 5 470 2 469 4.81e-91 286
MS.gene013874.t1 MTR_6g081300 34.989 463 295 4 25 483 5 465 3.29e-89 281
MS.gene013874.t1 MTR_7g082810 35.565 478 306 1 11 486 1 478 5.31e-88 278
MS.gene013874.t1 MTR_1g108810 34.348 460 294 4 12 465 14 471 6.47e-87 275
MS.gene013874.t1 MTR_5g087930 34.968 469 272 5 17 483 23 460 1.71e-84 268
MS.gene013874.t1 MTR_6g066380 36.117 443 276 4 33 470 31 471 1.80e-84 269
MS.gene013874.t1 MTR_6g081390 34.348 460 293 6 25 478 7 463 7.60e-84 266
MS.gene013874.t1 MTR_2g078930 37.391 460 274 3 13 461 20 476 9.29e-83 265
MS.gene013874.t1 MTR_6g081400 33.921 454 291 6 25 472 10 460 1.43e-82 263
MS.gene013874.t1 MTR_2g079020 37.013 462 277 4 11 461 12 470 3.06e-82 263
MS.gene013874.t1 MTR_6g081810 33.839 461 280 4 10 470 8 443 8.80e-82 261
MS.gene013874.t1 MTR_6g081240 33.860 443 287 4 25 463 5 445 9.50e-81 258
MS.gene013874.t1 MTR_8g106670 32.889 450 289 4 30 472 13 456 5.26e-79 254
MS.gene013874.t1 MTR_2g078970 37.061 456 273 4 17 461 12 464 9.32e-79 254
MS.gene013874.t1 MTR_1g108840 33.054 478 310 4 1 470 8 483 3.60e-78 253
MS.gene013874.t1 MTR_2g078960 38.215 437 262 2 30 461 33 466 7.88e-78 251
MS.gene013874.t1 MTR_6g004220 32.051 468 309 4 18 479 11 475 7.64e-76 246
MS.gene013874.t1 MTR_1g108990 32.762 467 312 1 6 470 1 467 2.26e-74 242
MS.gene013874.t1 MTR_6g004220 32.334 467 305 5 3 463 5 466 3.03e-73 240
MS.gene013874.t1 MTR_1g109060 33.758 471 301 3 6 470 1 466 1.77e-72 237
MS.gene013874.t1 MTR_1g109060 33.758 471 300 4 6 470 1 465 5.68e-71 234
MS.gene013874.t1 MTR_6g081310 33.047 466 272 8 25 470 5 450 1.88e-69 229
MS.gene013874.t1 MTR_7g082800 33.165 395 262 1 89 481 1 395 2.11e-67 222
MS.gene013874.t1 MTR_5g090280 33.647 425 237 9 89 481 1 412 2.31e-63 212
MS.gene013874.t1 MTR_3g111020 28.817 465 313 5 14 468 35 491 5.88e-63 214
MS.gene013874.t1 MTR_2g078990 38.305 295 170 4 174 461 4 293 2.02e-53 182
MS.gene013874.t1 MTR_5g010830 27.640 445 312 4 30 468 65 505 2.41e-52 186
MS.gene013874.t1 MTR_5g067460 25.678 479 345 4 7 479 32 505 2.56e-52 186
MS.gene013874.t1 MTR_1g101500 27.371 464 321 4 14 468 48 504 8.12e-52 184
MS.gene013874.t1 MTR_0039s0080 27.056 462 323 5 27 480 35 490 4.02e-49 176
MS.gene013874.t1 MTR_6g043810 25.651 499 343 6 1 483 1 487 6.56e-49 176
MS.gene013874.t1 MTR_6g043810 26.000 500 341 6 8 483 3 497 8.25e-49 175
MS.gene013874.t1 MTR_6g004220 29.765 383 260 4 18 394 18 397 7.09e-48 171
MS.gene013874.t1 MTR_4g027920 25.163 461 337 3 27 479 153 613 8.50e-46 169
MS.gene013874.t1 MTR_2g079030 41.026 195 115 0 267 461 319 513 3.59e-38 146
MS.gene013874.t1 MTR_6g088805 25.963 493 337 7 4 486 2 476 2.64e-36 140
MS.gene013874.t1 MTR_8g102430 26.562 448 277 9 30 460 23 435 1.79e-35 137
MS.gene013874.t1 MTR_5g011540 27.015 459 312 6 22 467 35 483 5.25e-33 131
MS.gene013874.t1 MTR_2g435930 22.642 477 329 6 30 470 5 477 7.19e-31 125
MS.gene013874.t1 MTR_6g004220 27.914 326 218 6 3 322 5 319 8.98e-31 122
MS.gene013874.t1 MTR_4g131290 50.909 55 27 0 102 156 13 67 2.97e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene013874.t1 AT1G33110 66.189 488 161 3 2 485 4 491 0.0 673
MS.gene013874.t1 AT1G33100 64.108 482 172 1 5 485 7 488 0.0 658
MS.gene013874.t1 AT1G33090 63.093 485 175 3 5 485 7 491 0.0 632
MS.gene013874.t1 AT1G33080 62.397 484 178 2 5 484 7 490 0.0 626
MS.gene013874.t1 AT1G33080 63.931 463 163 2 5 463 7 469 0.0 612
MS.gene013874.t1 AT1G33110 67.250 400 127 3 2 397 4 403 0.0 553
MS.gene013874.t1 AT5G65380 50.526 475 232 3 2 474 9 482 3.90e-165 476
MS.gene013874.t1 AT5G44050 49.582 478 235 3 4 477 13 488 4.01e-165 476
MS.gene013874.t1 AT1G47530 46.458 480 250 3 1 474 1 479 1.78e-151 441
MS.gene013874.t1 AT4G00350 47.072 444 235 0 31 474 88 531 2.80e-150 440
MS.gene013874.t1 AT5G10420 47.510 482 246 5 4 482 12 489 1.59e-149 436
MS.gene013874.t1 AT1G12950 47.241 453 238 1 31 482 67 519 4.93e-144 423
MS.gene013874.t1 AT3G26590 47.297 444 233 1 31 473 45 488 1.13e-143 421
MS.gene013874.t1 AT4G25640 46.347 479 251 2 10 482 7 485 8.61e-141 414
MS.gene013874.t1 AT1G11670 44.737 494 252 4 1 473 1 494 1.20e-140 414
MS.gene013874.t1 AT3G03620 44.043 470 262 1 15 483 21 490 2.23e-140 413
MS.gene013874.t1 AT3G03620 44.043 470 262 1 15 483 21 490 2.23e-140 413
MS.gene013874.t1 AT4G25640 46.347 479 251 2 10 482 7 485 3.66e-140 413
MS.gene013874.t1 AT1G61890 45.336 461 246 2 19 473 31 491 8.39e-140 412
MS.gene013874.t1 AT5G38030 45.374 454 247 1 31 483 45 498 1.14e-138 409
MS.gene013874.t1 AT1G23300 45.969 459 243 2 31 488 44 498 3.30e-138 408
MS.gene013874.t1 AT5G17700 42.647 476 271 2 2 475 4 479 3.79e-138 407
MS.gene013874.t1 AT5G17700 42.647 476 271 2 2 475 4 479 3.79e-138 407
MS.gene013874.t1 AT3G21690 46.578 453 240 1 24 474 45 497 1.96e-136 403
MS.gene013874.t1 AT1G61890 44.231 468 253 3 5 464 15 482 4.93e-135 399
MS.gene013874.t1 AT1G47530 48.964 386 196 1 89 473 1 386 2.85e-131 386
MS.gene013874.t1 AT4G25640 47.086 429 221 2 10 432 7 435 1.81e-127 379
MS.gene013874.t1 AT3G26590 47.927 386 200 1 89 473 1 386 4.14e-126 373
MS.gene013874.t1 AT4G21910 42.082 461 260 3 19 473 41 500 1.15e-125 376
MS.gene013874.t1 AT4G21910 42.082 461 260 3 19 473 41 500 1.15e-125 376
MS.gene013874.t1 AT4G21910 40.956 481 261 4 15 473 19 498 1.77e-125 375
MS.gene013874.t1 AT4G21910 40.956 481 261 4 15 473 19 498 1.77e-125 375
MS.gene013874.t1 AT4G21903 44.131 426 233 4 51 473 73 496 1.46e-122 368
MS.gene013874.t1 AT4G21903 42.825 446 243 6 51 489 73 513 1.75e-119 360
MS.gene013874.t1 AT1G61890 43.953 430 235 2 19 442 31 460 8.69e-119 357
MS.gene013874.t1 AT3G59030 40.316 506 277 5 1 483 1 504 5.96e-118 356
MS.gene013874.t1 AT4G21903 44.845 388 210 3 89 473 1 387 2.54e-116 348
MS.gene013874.t1 AT5G17700 42.211 398 228 2 2 397 4 401 6.70e-110 332
MS.gene013874.t1 AT5G52450 35.269 465 295 2 25 485 20 482 8.12e-89 280
MS.gene013874.t1 AT2G34360 34.884 473 290 6 20 485 16 477 2.52e-86 273
MS.gene013874.t1 AT3G59030 38.129 417 234 4 1 394 1 416 7.04e-85 268
MS.gene013874.t1 AT1G73700 35.699 465 291 5 20 479 13 474 6.78e-83 265
MS.gene013874.t1 AT1G71140 33.913 460 294 3 17 470 12 467 1.58e-80 259
MS.gene013874.t1 AT1G66760 32.285 477 310 4 10 480 10 479 5.57e-76 247
MS.gene013874.t1 AT2G34360 31.723 476 267 4 16 485 12 435 1.94e-75 244
MS.gene013874.t1 AT1G15150 34.136 457 286 6 31 480 31 479 1.95e-74 243
MS.gene013874.t1 AT1G66760 32.609 460 297 4 10 463 10 462 1.64e-73 240
MS.gene013874.t1 AT1G15160 31.677 483 306 7 14 480 5 479 2.14e-72 238
MS.gene013874.t1 AT1G66780 34.742 426 274 2 48 470 52 476 2.39e-72 237
MS.gene013874.t1 AT2G04080 33.192 473 294 9 14 470 2 468 7.62e-72 236
MS.gene013874.t1 AT1G15170 33.402 482 302 8 1 470 1 475 3.11e-71 234
MS.gene013874.t1 AT2G04080 32.836 469 293 9 14 466 2 464 2.83e-69 229
MS.gene013874.t1 AT2G04040 33.259 448 285 7 31 470 27 468 3.19e-69 229
MS.gene013874.t1 AT2G04070 32.543 464 302 5 16 470 7 468 4.02e-69 229
MS.gene013874.t1 AT3G23560 33.040 454 293 2 19 461 18 471 3.16e-68 226
MS.gene013874.t1 AT2G04050 32.692 468 303 5 10 470 6 468 1.63e-67 224
MS.gene013874.t1 AT1G64820 30.942 446 300 4 30 470 28 470 3.27e-67 224
MS.gene013874.t1 AT3G23550 33.257 436 285 3 30 461 30 463 2.22e-66 221
MS.gene013874.t1 AT2G04100 31.637 452 299 4 25 470 24 471 9.88e-64 214
MS.gene013874.t1 AT1G15180 33.333 447 286 6 31 470 35 476 2.70e-63 213
MS.gene013874.t1 AT2G04090 31.556 450 290 6 31 470 30 471 1.43e-62 211
MS.gene013874.t1 AT2G04100 31.767 447 295 4 25 465 24 466 2.45e-62 211
MS.gene013874.t1 AT1G15150 34.783 368 228 5 120 480 1 363 1.16e-60 203
MS.gene013874.t1 AT1G15170 34.078 358 227 4 120 470 1 356 1.47e-58 197
MS.gene013874.t1 AT2G38510 24.892 462 340 3 27 483 2 461 2.70e-50 179
MS.gene013874.t1 AT1G66760 32.036 334 225 1 132 463 1 334 4.40e-50 174
MS.gene013874.t1 AT1G66760 30.435 391 259 4 10 394 10 393 2.70e-49 174
MS.gene013874.t1 AT3G23560 31.783 387 253 2 19 394 18 404 1.40e-47 170
MS.gene013874.t1 AT1G58340 24.722 449 328 3 30 472 57 501 5.49e-47 171
MS.gene013874.t1 AT4G29140 25.153 489 344 6 1 479 29 505 1.72e-41 155
MS.gene013874.t1 AT1G71870 24.008 504 343 9 7 483 7 497 3.81e-41 154
MS.gene013874.t1 AT5G19700 25.793 473 331 5 6 468 13 475 1.48e-40 152
MS.gene013874.t1 AT5G52050 24.886 438 287 6 55 467 59 479 3.66e-35 137
MS.gene013874.t1 AT4G23030 24.638 483 352 5 8 483 10 487 5.33e-33 131
MS.gene013874.t1 AT5G49130 25.667 487 334 8 11 478 12 489 8.92e-33 130
MS.gene013874.t1 AT1G15180 31.560 282 184 5 120 394 1 280 3.42e-29 119
MS.gene013874.t1 AT4G22790 25.439 456 306 11 50 489 49 486 4.16e-28 117
MS.gene013874.t1 AT2G04066 38.400 125 76 1 347 470 39 163 4.32e-24 99.4

Find 106 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTTATTGGATGCCAAATT+TGG 0.098899 7.1:-18354616 MS.gene013874:CDS
CTAGAAATCGTGTTAATAAA+TGG 0.175287 7.1:-18352318 MS.gene013874:CDS
ATCAAGCTTTCTTTGTCTTC+TGG 0.197875 7.1:-18354510 MS.gene013874:CDS
TGGCCAAGTGCCACTAAAAT+TGG 0.210821 7.1:+18354867 None:intergenic
AAAATAAGCTGGCCCAAATT+TGG 0.247332 7.1:+18354603 None:intergenic
TTGGACACTGTTCATTAATA+TGG 0.249353 7.1:+18353709 None:intergenic
TGTGATTATCATAAGCATTA+TGG 0.251121 7.1:+18352473 None:intergenic
TACCTAATTGGTATTCCTAT+TGG 0.253015 7.1:-18353327 MS.gene013874:CDS
CATTAGCCACATCTGGATTT+GGG 0.265681 7.1:+18353765 None:intergenic
GCATTAGCCACATCTGGATT+TGG 0.277971 7.1:+18353764 None:intergenic
AAGTTCAAGTTTGGCCTTAA+TGG 0.279298 7.1:-18354660 MS.gene013874:CDS
CCATTGATGCTCTGGCTATA+TGG 0.281179 7.1:-18354173 MS.gene013874:intron
TGTTCTTGCTTTGTGCTTGT+AGG 0.291347 7.1:+18354751 None:intergenic
CAATCCTTCATTGGTCATAT+TGG 0.293119 7.1:-18355474 MS.gene013874:CDS
CAGGTTTGCAAATGGTATTC+TGG 0.301200 7.1:-18355406 MS.gene013874:intron
TGTTGAAAACCTATTGAATA+TGG 0.301753 7.1:+18355518 None:intergenic
ATAGGCTGCTATTACCTAAT+TGG 0.305303 7.1:-18353339 MS.gene013874:CDS
TTGATGTCATTGCACCATTA+AGG 0.308624 7.1:+18354646 None:intergenic
TGCAATGACATCAATCCTTT+TGG 0.332957 7.1:-18354637 MS.gene013874:CDS
AGTGTCCAACCTGTGCTTTC+TGG 0.333975 7.1:-18353695 MS.gene013874:intron
GAAAATATTGCACAAGTTGC+TGG 0.335153 7.1:-18354840 MS.gene013874:CDS
TGTAAGCAAGTCTTCCTCTT+AGG 0.344861 7.1:+18353795 None:intergenic
GAGAAACCCTTCCATGTATC+AGG 0.346664 7.1:+18354564 None:intergenic
TGTCTTCTGGAGCTATGTTA+TGG 0.346964 7.1:-18354497 MS.gene013874:intron
GTTTGGATTGGAATGTTGTT+TGG 0.348970 7.1:-18352510 MS.gene013874:CDS
TCTTCTTCATTTGCAAGTTA+AGG 0.355036 7.1:-18353289 MS.gene013874:intron
TCTTGATATTCTTCTTTAGT+TGG 0.358461 7.1:+18352252 None:intergenic
TTAACTGTGAAGTTCAAGTT+TGG 0.371162 7.1:-18354669 MS.gene013874:CDS
CTCCAATAGGAATACCAATT+AGG 0.396168 7.1:+18353325 None:intergenic
TTGTTATGACTGTCCTAGTC+AGG 0.399000 7.1:-18355425 MS.gene013874:CDS
CAGGCCCTGCCATATTCAAT+AGG 0.402161 7.1:-18355527 MS.gene013874:CDS
GCTTATTGGATGCCAAATTT+GGG 0.405071 7.1:-18354615 MS.gene013874:CDS
GGCTCTTCTTCCTCCTCTGA+AGG 0.408718 7.1:+18355597 None:intergenic
GACAAAGAAAGCTTGATAAC+AGG 0.408772 7.1:+18354516 None:intergenic
TTTGTGCTTGTAGGAACATT+TGG 0.420861 7.1:+18354760 None:intergenic
TTGAAAATTGTAGTTGGGTA+TGG 0.421860 7.1:-18355027 MS.gene013874:intron
CCAACTGCATTAGCCACATC+TGG 0.423816 7.1:+18353758 None:intergenic
CCATATAGCCAGAGCATCAA+TGG 0.424170 7.1:+18354173 None:intergenic
TTACCAAGCACAACTCCAAT+AGG 0.429954 7.1:+18353312 None:intergenic
AAGGGCATAAGCAGCTAATT+CGG 0.440329 7.1:+18355446 None:intergenic
GTAGTTGCTCAATCCTTCAT+TGG 0.440406 7.1:-18355483 MS.gene013874:CDS
AAGAAGAGCCACTAAGGAAA+AGG 0.447419 7.1:-18355584 MS.gene013874:CDS
TTGCTGGAAGCATTTCAATA+TGG 0.449250 7.1:-18354824 MS.gene013874:CDS
TGAGATTTCCATTGATGCTC+TGG 0.450205 7.1:-18354181 MS.gene013874:CDS
TAGAAATCGTGTTAATAAAT+GGG 0.454565 7.1:-18352317 MS.gene013874:CDS
AGCATTTCAATATGGTCAAT+AGG 0.456375 7.1:-18354816 MS.gene013874:CDS
ACACTATGTGGACAAGCATA+TGG 0.467239 7.1:-18354990 MS.gene013874:CDS
ATAGGTGTTTCTGTTGGAGC+TGG 0.468391 7.1:-18353390 MS.gene013874:intron
TTTGCAGCCTCAACATCAAT+GGG 0.469922 7.1:-18354054 MS.gene013874:intron
GAAAACCTATTGAATATGGC+AGG 0.470460 7.1:+18355522 None:intergenic
GCTCTTCTTCCTCCTCTGAA+GGG 0.476165 7.1:+18355598 None:intergenic
TTGATCTTTCTGTTCCTAAG+AGG 0.477472 7.1:-18353809 MS.gene013874:CDS
AAGTGCCACTAAAATTGGTT+TGG 0.478153 7.1:+18354872 None:intergenic
GAGTGTATCTTCAAAGATCA+TGG 0.479506 7.1:-18354944 MS.gene013874:CDS
GTGTTTCTGTTGGAGCTGGC+TGG 0.479528 7.1:-18353386 MS.gene013874:CDS
AGCCACTAAGGAAAAGGGTA+TGG 0.482191 7.1:-18355578 MS.gene013874:CDS
TTGGCATCCAATAAGCCAAA+AGG 0.492999 7.1:+18354622 None:intergenic
TTGGTTTCTTTGCTGCAGCT+AGG 0.493302 7.1:-18354012 MS.gene013874:intron
TAATCACATTTAAGACTGAC+TGG 0.493785 7.1:-18352458 MS.gene013874:CDS
GCAAAACAATATGATATGCT+TGG 0.495199 7.1:-18354966 MS.gene013874:CDS
AGGAGGAAGAAGAGCCACTA+AGG 0.500928 7.1:-18355590 MS.gene013874:CDS
ATTCCTATTGGAGTTGTGCT+TGG 0.501302 7.1:-18353315 MS.gene013874:CDS
AGAAGAGCCACTAAGGAAAA+GGG 0.507893 7.1:-18355583 MS.gene013874:CDS
TGAACCAATATGACCAATGA+AGG 0.509207 7.1:+18355470 None:intergenic
AAGAAGCTGTGGATAGTAGC+AGG 0.510220 7.1:-18355546 MS.gene013874:CDS
TGACAAAATGTCCTGATACA+TGG 0.517890 7.1:-18354575 MS.gene013874:CDS
TTTCCCACCCATTGATGTTG+AGG 0.520512 7.1:+18354047 None:intergenic
AACAGGCCAAAGATCTTTGA+AGG 0.527613 7.1:+18354533 None:intergenic
TTGTGAATAGGTGTTTCTGT+TGG 0.527931 7.1:-18353396 MS.gene013874:intron
GTCCTAGTCAGGTTTGCAAA+TGG 0.528064 7.1:-18355414 MS.gene013874:CDS
CCAGATGTGGCTAATGCAGT+TGG 0.534123 7.1:-18353758 MS.gene013874:CDS
TGTTAATAAATGGGCTGTAG+TGG 0.537932 7.1:-18352308 MS.gene013874:CDS
GATTCTTCTAACAGGAAACA+TGG 0.540823 7.1:-18354211 MS.gene013874:CDS
ATGAATCAAACAACACATCA+AGG 0.547424 7.1:-18352279 MS.gene013874:CDS
AATTGGAAGAAGAAGAATTG+AGG 0.547786 7.1:+18354905 None:intergenic
CAAGAATAGCACAAATCCAA+TGG 0.555748 7.1:+18353829 None:intergenic
TAAGACTGACTGGGACAAGC+AGG 0.560914 7.1:-18352448 MS.gene013874:intron
GTTGTAGCATATGTAAACAT+AGG 0.569004 7.1:-18353357 MS.gene013874:CDS
GTTAGGGTGTCAAATGAACT+AGG 0.580896 7.1:-18353911 MS.gene013874:CDS
AAAATGTCCTGATACATGGA+AGG 0.587310 7.1:-18354571 MS.gene013874:CDS
GTGTCAAATGAACTAGGCAG+AGG 0.587372 7.1:-18353905 MS.gene013874:CDS
TACCATTTGCAAACCTGACT+AGG 0.588271 7.1:+18355412 None:intergenic
ATTAGCCACATCTGGATTTG+GGG 0.588466 7.1:+18353766 None:intergenic
GCAGCCTCAACATCAATGGG+TGG 0.590413 7.1:-18354051 MS.gene013874:intron
GCCACTAAGGAAAAGGGTAT+GGG 0.595578 7.1:-18355577 MS.gene013874:CDS
CAGCCTCAACATCAATGGGT+GGG 0.609170 7.1:-18354050 MS.gene013874:CDS
TAGCTGCAGCAAAGAAACCA+AGG 0.611276 7.1:+18354014 None:intergenic
TGGGAAATGATGATAGCCCT+TGG 0.617562 7.1:-18354031 MS.gene013874:CDS
TGACTAGGACAGTCATAACA+AGG 0.618469 7.1:+18355427 None:intergenic
GCATCAAAACCCTTCAGAGG+AGG 0.620658 7.1:-18355607 MS.gene013874:CDS
ATTTACCAGAAAGCACAGGT+TGG 0.623673 7.1:+18353690 None:intergenic
AAATATTTACCAGAAAGCAC+AGG 0.625292 7.1:+18353686 None:intergenic
ACTAGGCAGAGGGAGTTCCA+AGG 0.626189 7.1:-18353894 MS.gene013874:CDS
GGGAAGAAAGCAAGAAGCTG+TGG 0.627710 7.1:-18355557 MS.gene013874:CDS
TTTCACCCCAAATCCAGATG+TGG 0.637534 7.1:-18353771 MS.gene013874:CDS
TGTCAAATGAACTAGGCAGA+GGG 0.643173 7.1:-18353904 MS.gene013874:CDS
AGCTGCAGCAAAGAAACCAA+GGG 0.647868 7.1:+18354015 None:intergenic
GCAGCATCAAAACCCTTCAG+AGG 0.649637 7.1:-18355610 MS.gene013874:CDS
AAATGTCCTGATACATGGAA+GGG 0.649772 7.1:-18354570 MS.gene013874:CDS
AATCACATTTAAGACTGACT+GGG 0.658771 7.1:-18352457 MS.gene013874:CDS
AAAACCTATTGAATATGGCA+GGG 0.658833 7.1:+18355523 None:intergenic
TTGAAATTGAAACTGCTGCA+AGG 0.660479 7.1:+18354715 None:intergenic
TGTGAGCACTGTTATCACAA+TGG 0.707567 7.1:+18353859 None:intergenic
GACTAGGACAGTCATAACAA+GGG 0.709723 7.1:+18355428 None:intergenic
AGTGCATTAGAAACACTATG+TGG 0.716160 7.1:-18355002 MS.gene013874:CDS
AATATGGAGAATGATAACAA+AGG 0.716405 7.1:+18353725 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATTTGTCAAAAAATTAA+TGG + chr7.1:18355261-18355280 None:intergenic 10.0%
!! ATAATATATCAACATTACAT+TGG + chr7.1:18355029-18355048 None:intergenic 15.0%
!! ATATATACCAAATAGAAAAT+GGG - chr7.1:18355278-18355297 MS.gene013874:intron 15.0%
!! TATATATACCAAATAGAAAA+TGG - chr7.1:18355277-18355296 MS.gene013874:intron 15.0%
!!! TAATAACATATGTATTTTAC+AGG - chr7.1:18355559-18355578 MS.gene013874:CDS 15.0%
!!! TCAATTTTTAAGATTATGTA+TGG - chr7.1:18353459-18353478 MS.gene013874:intron 15.0%
!! AATGATTAAAGAGATATTGT+TGG - chr7.1:18355348-18355367 MS.gene013874:intron 20.0%
!! ATTAATTTACTAAACTACGT+GGG - chr7.1:18355047-18355066 MS.gene013874:intron 20.0%
!! CTGCTTAAAATTATAAGAAA+CGG + chr7.1:18355535-18355554 None:intergenic 20.0%
!! TAGAAATCGTGTTAATAAAT+GGG - chr7.1:18355592-18355611 MS.gene013874:CDS 20.0%
!! TATTAATTTACTAAACTACG+TGG - chr7.1:18355046-18355065 MS.gene013874:intron 20.0%
!! TGATTACCAAAAAATATAGT+TGG + chr7.1:18354846-18354865 None:intergenic 20.0%
!! TTTATTCTAAATCTTCAATG+AGG + chr7.1:18355126-18355145 None:intergenic 20.0%
!!! ACAACATTTTTAGATGAATT+TGG + chr7.1:18354494-18354513 None:intergenic 20.0%
!!! TTTTAGTCCTTAAGATTATA+GGG - chr7.1:18354314-18354333 MS.gene013874:intron 20.0%
!!! TTTTTTGGTAATCATATCAT+TGG - chr7.1:18354852-18354871 MS.gene013874:CDS 20.0%
! AATATGGAGAATGATAACAA+AGG + chr7.1:18354187-18354206 None:intergenic 25.0%
! ACCAAAAAATATAGTTGGAA+GGG + chr7.1:18354841-18354860 None:intergenic 25.0%
! ACCTATCATTTATGAAATCA+TGG - chr7.1:18355158-18355177 MS.gene013874:intron 25.0%
! AGCAAATTGAAAATTGTAGT+TGG - chr7.1:18352876-18352895 MS.gene013874:intron 25.0%
! ATAAGACTAACATAAAGCTA+TGG - chr7.1:18353636-18353655 MS.gene013874:intron 25.0%
! ATCTTGCAAGTGAAAAAATA+AGG - chr7.1:18352827-18352846 MS.gene013874:intron 25.0%
! CTAAAAATGTTGTTGTGAAT+AGG - chr7.1:18354501-18354520 MS.gene013874:CDS 25.0%
! CTAGAAATCGTGTTAATAAA+TGG - chr7.1:18355591-18355610 MS.gene013874:CDS 25.0%
! CTCTCTTTAAATTATATACG+TGG + chr7.1:18355306-18355325 None:intergenic 25.0%
! CTTTAATCATTATGCGATAT+AGG + chr7.1:18355339-18355358 None:intergenic 25.0%
! GAAGAAAAAATATGGTTGAT+AGG + chr7.1:18354956-18354975 None:intergenic 25.0%
! GCAAATTGAAAATTGTAGTT+GGG - chr7.1:18352877-18352896 MS.gene013874:intron 25.0%
! GCTATTTGATCTCTAATTAA+TGG + chr7.1:18354369-18354388 None:intergenic 25.0%
! TACCAAAAAATATAGTTGGA+AGG + chr7.1:18354842-18354861 None:intergenic 25.0%
! TCCATGATTTCATAAATGAT+AGG + chr7.1:18355162-18355181 None:intergenic 25.0%
! TGTGATTATCATAAGCATTA+TGG + chr7.1:18355439-18355458 None:intergenic 25.0%
! TGTTGAAAACCTATTGAATA+TGG + chr7.1:18352394-18352413 None:intergenic 25.0%
! TTGTCATGATAAAAATAAGC+TGG + chr7.1:18353320-18353339 None:intergenic 25.0%
! TTTAGTCCTTAAGATTATAG+GGG - chr7.1:18354315-18354334 MS.gene013874:intron 25.0%
!! ACTTTTACAGTCTTGAAATA+TGG - chr7.1:18353661-18353680 MS.gene013874:intron 25.0%
!! ATATCAACATTACATTGGTT+AGG + chr7.1:18355024-18355043 None:intergenic 25.0%
!! CTTTTAGTCCTTAAGATTAT+AGG - chr7.1:18354313-18354332 MS.gene013874:intron 25.0%
!! GGTTTGGTAAAAATGTAAAT+TGG + chr7.1:18353024-18353043 None:intergenic 25.0%
!! TATCAACATTACATTGGTTA+GGG + chr7.1:18355023-18355042 None:intergenic 25.0%
!! TTCAATAGGTTTTCAACATT+TGG - chr7.1:18352396-18352415 MS.gene013874:intron 25.0%
!! TTTTACCAAACCAATTTTAG+TGG - chr7.1:18353032-18353051 MS.gene013874:intron 25.0%
!!! AGCTTTATGTTAGTCTTATT+GGG + chr7.1:18353635-18353654 None:intergenic 25.0%
!!! ATTACATTTTTTGCAGTGTT+AGG - chr7.1:18353981-18354000 MS.gene013874:intron 25.0%
!!! CAATACATGTTTTTATGTCA+TGG - chr7.1:18353214-18353233 MS.gene013874:intron 25.0%
!!! TAGCTTTATGTTAGTCTTAT+TGG + chr7.1:18353636-18353655 None:intergenic 25.0%
!!! TTACATTTTTTGCAGTGTTA+GGG - chr7.1:18353982-18354001 MS.gene013874:intron 25.0%
AAAACCTATTGAATATGGCA+GGG + chr7.1:18352389-18352408 None:intergenic 30.0%
AATTGGAAGAAGAAGAATTG+AGG + chr7.1:18353007-18353026 None:intergenic 30.0%
ACAAATACAATTGCAGTTGA+TGG - chr7.1:18352758-18352777 MS.gene013874:intron 30.0%
ACTGTCAGATCTTAAATCAA+CGG + chr7.1:18354437-18354456 None:intergenic 30.0%
AGCATTTCAATATGGTCAAT+AGG - chr7.1:18353093-18353112 MS.gene013874:intron 30.0%
ATAGACAACTACATATGTGT+TGG - chr7.1:18354897-18354916 MS.gene013874:CDS 30.0%
ATGAATCAAACAACACATCA+AGG - chr7.1:18355630-18355649 MS.gene013874:CDS 30.0%
ATGGTTAGACATTTCATTCA+TGG + chr7.1:18355203-18355222 None:intergenic 30.0%
CCAAAAAATATAGTTGGAAG+GGG + chr7.1:18354840-18354859 None:intergenic 30.0%
CCAATTGCATTTGATACAAA+TGG + chr7.1:18355222-18355241 None:intergenic 30.0%
CCATTTGTATCAAATGCAAT+TGG - chr7.1:18355219-18355238 MS.gene013874:intron 30.0%
CGATAATACTATTGTGATTG+AGG + chr7.1:18352717-18352736 None:intergenic 30.0%
CTATAATACAATTGCGATTG+AGG + chr7.1:18352612-18352631 None:intergenic 30.0%
GACATCCCACTAAATATAAT+CGG + chr7.1:18354818-18354837 None:intergenic 30.0%
GCAAAACAATATGATATGCT+TGG - chr7.1:18352943-18352962 MS.gene013874:intron 30.0%
GCAATTGTATTTGTGACATA+TGG + chr7.1:18352752-18352771 None:intergenic 30.0%
GTTGTAGCATATGTAAACAT+AGG - chr7.1:18354552-18354571 MS.gene013874:CDS 30.0%
GTTTGTAATCAAAGTGTGTT+TGG - chr7.1:18353481-18353500 MS.gene013874:intron 30.0%
TACCTAATTGGTATTCCTAT+TGG - chr7.1:18354582-18354601 MS.gene013874:CDS 30.0%
TAGACAACTACATATGTGTT+GGG - chr7.1:18354898-18354917 MS.gene013874:CDS 30.0%
TCTTCTTCATTTGCAAGTTA+AGG - chr7.1:18354620-18354639 MS.gene013874:CDS 30.0%
TCTTGTCAGTACTAAATGTT+AGG - chr7.1:18353954-18353973 MS.gene013874:intron 30.0%
TTAGTCCTTAAGATTATAGG+GGG - chr7.1:18354316-18354335 MS.gene013874:intron 30.0%
TTGAAAATTGTAGTTGGGTA+TGG - chr7.1:18352882-18352901 MS.gene013874:intron 30.0%
TTGGACACTGTTCATTAATA+TGG + chr7.1:18354203-18354222 None:intergenic 30.0%
TTGTATCAAATGCAATTGGT+TGG - chr7.1:18355223-18355242 MS.gene013874:intron 30.0%
! AAATATTTACCAGAAAGCAC+AGG + chr7.1:18354226-18354245 None:intergenic 30.0%
! AATCACATTTAAGACTGACT+GGG - chr7.1:18355452-18355471 MS.gene013874:CDS 30.0%
! ACCTTACCGATTATATTTAG+TGG - chr7.1:18354809-18354828 MS.gene013874:CDS 30.0%
! ATTGATGACTAATCTCTTAC+AGG - chr7.1:18354784-18354803 MS.gene013874:CDS 30.0%
! CCTTACCGATTATATTTAGT+GGG - chr7.1:18354810-18354829 MS.gene013874:CDS 30.0%
! CTTGTGCAATATTTTCATCT+TGG + chr7.1:18353065-18353084 None:intergenic 30.0%
! GTTTTCAACATTTGGTATCA+TGG - chr7.1:18352404-18352423 MS.gene013874:intron 30.0%
! GTTTTGTATTTGTGACATCA+AGG + chr7.1:18352646-18352665 None:intergenic 30.0%
! TAATCACATTTAAGACTGAC+TGG - chr7.1:18355451-18355470 MS.gene013874:CDS 30.0%
! TGTAAGAGATTAGTCATCAA+TGG + chr7.1:18354785-18354804 None:intergenic 30.0%
! TTAACTGTGAAGTTCAAGTT+TGG - chr7.1:18353240-18353259 MS.gene013874:intron 30.0%
! TTGATGACTAATCTCTTACA+GGG - chr7.1:18354785-18354804 MS.gene013874:CDS 30.0%
!! ATATTGTTGGTGCTGAAATT+GGG - chr7.1:18355361-18355380 MS.gene013874:intron 30.0%
!!! ACAGTTTTGATTCTTCTAAC+AGG - chr7.1:18353690-18353709 MS.gene013874:intron 30.0%
AAAATAAGCTGGCCCAAATT+TGG + chr7.1:18353309-18353328 None:intergenic 35.0%
AAAATGTCCTGATACATGGA+AGG - chr7.1:18353338-18353357 MS.gene013874:CDS 35.0%
AAATACAAAACTGCGATCGA+CGG - chr7.1:18352655-18352674 MS.gene013874:intron 35.0%
AAATGTCCTGATACATGGAA+GGG - chr7.1:18353339-18353358 MS.gene013874:CDS 35.0%
AGACAACTACATATGTGTTG+GGG - chr7.1:18354899-18354918 MS.gene013874:CDS 35.0%
AGTGCATTAGAAACACTATG+TGG - chr7.1:18352907-18352926 MS.gene013874:intron 35.0%
ATAGGCTGCTATTACCTAAT+TGG - chr7.1:18354570-18354589 MS.gene013874:CDS 35.0%
ATCAAATGCAATTGGTTGGT+TGG - chr7.1:18355227-18355246 MS.gene013874:intron 35.0%
ATCAAGCTTTCTTTGTCTTC+TGG - chr7.1:18353399-18353418 MS.gene013874:intron 35.0%
ATCTAACTTACCACCTTTGT+TGG - chr7.1:18354923-18354942 MS.gene013874:CDS 35.0%
ATTTGGATTCTCTGCTGTAA+CGG + chr7.1:18354477-18354496 None:intergenic 35.0%
CAAGAATAGCACAAATCCAA+TGG + chr7.1:18354083-18354102 None:intergenic 35.0%
CAATCCTTCATTGGTCATAT+TGG - chr7.1:18352435-18352454 MS.gene013874:intron 35.0%
CCCACTAAATATAATCGGTA+AGG + chr7.1:18354813-18354832 None:intergenic 35.0%
CTCCAATAGGAATACCAATT+AGG + chr7.1:18354587-18354606 None:intergenic 35.0%
GAAAACCTATTGAATATGGC+AGG + chr7.1:18352390-18352409 None:intergenic 35.0%
GAAAATATTGCACAAGTTGC+TGG - chr7.1:18353069-18353088 MS.gene013874:intron 35.0%
GAATTGGATTTGGATAAGCA+AGG + chr7.1:18354999-18355018 None:intergenic 35.0%
GACTACGATTTAAACGATTG+AGG + chr7.1:18352542-18352561 None:intergenic 35.0%
GACTCGTCGAAGAAAAAATA+TGG + chr7.1:18354964-18354983 None:intergenic 35.0%
GAGTGTATCTTCAAAGATCA+TGG - chr7.1:18352965-18352984 MS.gene013874:intron 35.0%
GATTCTTCTAACAGGAAACA+TGG - chr7.1:18353698-18353717 MS.gene013874:CDS 35.0%
GCTTATTGGATGCCAAATTT+GGG - chr7.1:18353294-18353313 MS.gene013874:CDS 35.0%
TATTGTGATTGAGGTAGCAT+CGG + chr7.1:18352708-18352727 None:intergenic 35.0%
TCTAACTTACCACCTTTGTT+GGG - chr7.1:18354924-18354943 MS.gene013874:CDS 35.0%
TGAACCAATATGACCAATGA+AGG + chr7.1:18352442-18352461 None:intergenic 35.0%
TGACAAAATGTCCTGATACA+TGG - chr7.1:18353334-18353353 MS.gene013874:CDS 35.0%
TTGAAATTGAAACTGCTGCA+AGG + chr7.1:18353197-18353216 None:intergenic 35.0%
TTGATCTTTCTGTTCCTAAG+AGG - chr7.1:18354100-18354119 MS.gene013874:intron 35.0%
TTGATGTCATTGCACCATTA+AGG + chr7.1:18353266-18353285 None:intergenic 35.0%
TTTGTGCTTGTAGGAACATT+TGG + chr7.1:18353152-18353171 None:intergenic 35.0%
! AAGTGCCACTAAAATTGGTT+TGG + chr7.1:18353040-18353059 None:intergenic 35.0%
! AATGGAAAATTTTGCTGCCT+TGG + chr7.1:18354035-18354054 None:intergenic 35.0%
! ATGGAAGGGTTTCTCATTTT+TGG - chr7.1:18353353-18353372 MS.gene013874:CDS 35.0%
! GACAAAGAAAGCTTGATAAC+AGG + chr7.1:18353396-18353415 None:intergenic 35.0%
! GTTTGGATTGGAATGTTGTT+TGG - chr7.1:18355399-18355418 MS.gene013874:intron 35.0%
! TGCAATGACATCAATCCTTT+TGG - chr7.1:18353272-18353291 MS.gene013874:intron 35.0%
! TTACATTGGTTAGGGTGAAT+TGG + chr7.1:18355015-18355034 None:intergenic 35.0%
! TTGTGAATAGGTGTTTCTGT+TGG - chr7.1:18354513-18354532 MS.gene013874:CDS 35.0%
!! AAACCAATTTTAGTGGCACT+TGG - chr7.1:18353039-18353058 MS.gene013874:intron 35.0%
!! AAGTTCAAGTTTGGCCTTAA+TGG - chr7.1:18353249-18353268 MS.gene013874:intron 35.0%
!! GATATTGTTGGTGCTGAAAT+TGG - chr7.1:18355360-18355379 MS.gene013874:intron 35.0%
!! TGTTAATAAATGGGCTGTAG+TGG - chr7.1:18355601-18355620 MS.gene013874:CDS 35.0%
!! TTGCTGGAAGCATTTCAATA+TGG - chr7.1:18353085-18353104 MS.gene013874:intron 35.0%
!! TTTTGGCCTTCAAAGATCTT+TGG - chr7.1:18353370-18353389 MS.gene013874:CDS 35.0%
!!! CATCAATCCTTTTGGCTTAT+TGG - chr7.1:18353280-18353299 MS.gene013874:intron 35.0%
!!! CCCCTTCCAACTATATTTTT+TGG - chr7.1:18354837-18354856 MS.gene013874:CDS 35.0%
AACAGGCCAAAGATCTTTGA+AGG + chr7.1:18353379-18353398 None:intergenic 40.0%
AAGAAGAGCCACTAAGGAAA+AGG - chr7.1:18352325-18352344 MS.gene013874:CDS 40.0%
AATTGCGATTGAGGTAGCAT+CGG + chr7.1:18352603-18352622 None:intergenic 40.0%
ACACTATGTGGACAAGCATA+TGG - chr7.1:18352919-18352938 MS.gene013874:intron 40.0%
ACATGCCCCCTATAATCTTA+AGG + chr7.1:18354324-18354343 None:intergenic 40.0%
AGAAGAGCCACTAAGGAAAA+GGG - chr7.1:18352326-18352345 MS.gene013874:CDS 40.0%
ATTAGCCACATCTGGATTTG+GGG + chr7.1:18354146-18354165 None:intergenic 40.0%
ATTCCTATTGGAGTTGTGCT+TGG - chr7.1:18354594-18354613 MS.gene013874:CDS 40.0%
CAGGTTTGCAAATGGTATTC+TGG - chr7.1:18352503-18352522 MS.gene013874:CDS 40.0%
CATTAGCCACATCTGGATTT+GGG + chr7.1:18354147-18354166 None:intergenic 40.0%
CTAACTTACCACCTTTGTTG+GGG - chr7.1:18354925-18354944 MS.gene013874:CDS 40.0%
GACTAGGACAGTCATAACAA+GGG + chr7.1:18352484-18352503 None:intergenic 40.0%
GGCTTATTGGATGCCAAATT+TGG - chr7.1:18353293-18353312 MS.gene013874:CDS 40.0%
GTAGTTGCTCAATCCTTCAT+TGG - chr7.1:18352426-18352445 MS.gene013874:intron 40.0%
TACCATTTGCAAACCTGACT+AGG + chr7.1:18352500-18352519 None:intergenic 40.0%
TGACTAGGACAGTCATAACA+AGG + chr7.1:18352485-18352504 None:intergenic 40.0%
TGAGATTTCCATTGATGCTC+TGG - chr7.1:18353728-18353747 MS.gene013874:CDS 40.0%
TGGTTAGGGTGAATTGGATT+TGG + chr7.1:18355009-18355028 None:intergenic 40.0%
TGTAAGCAAGTCTTCCTCTT+AGG + chr7.1:18354117-18354136 None:intergenic 40.0%
TGTCAAATGAACTAGGCAGA+GGG - chr7.1:18354005-18354024 MS.gene013874:intron 40.0%
TGTTCTTGCTTTGTGCTTGT+AGG + chr7.1:18353161-18353180 None:intergenic 40.0%
TTACCAAGCACAACTCCAAT+AGG + chr7.1:18354600-18354619 None:intergenic 40.0%
TTGGCATCCAATAAGCCAAA+AGG + chr7.1:18353290-18353309 None:intergenic 40.0%
TTGTTATGACTGTCCTAGTC+AGG - chr7.1:18352484-18352503 MS.gene013874:CDS 40.0%
TTTGCAGCCTCAACATCAAT+GGG - chr7.1:18353855-18353874 MS.gene013874:CDS 40.0%
! AAGGGCATAAGCAGCTAATT+CGG + chr7.1:18352466-18352485 None:intergenic 40.0%
! AATGCAATTGGTTGGTTGGT+TGG - chr7.1:18355231-18355250 MS.gene013874:intron 40.0%
! ATGCAATTGGTTGGTTGGTT+GGG - chr7.1:18355232-18355251 MS.gene013874:intron 40.0%
! ATTTACCAGAAAGCACAGGT+TGG + chr7.1:18354222-18354241 None:intergenic 40.0%
! CGTGGATCCCATTTTCTATT+TGG + chr7.1:18355288-18355307 None:intergenic 40.0%
! GTGCTCACATCATTTTCCAT+TGG - chr7.1:18354064-18354083 MS.gene013874:intron 40.0%
! GTTAGGGTGTCAAATGAACT+AGG - chr7.1:18353998-18354017 MS.gene013874:intron 40.0%
! TGTGAGCACTGTTATCACAA+TGG + chr7.1:18354053-18354072 None:intergenic 40.0%
! TTTTGCAGCCTCAACATCAA+TGG - chr7.1:18353854-18353873 MS.gene013874:CDS 40.0%
!! TGTCTTCTGGAGCTATGTTA+TGG - chr7.1:18353412-18353431 MS.gene013874:intron 40.0%
!!! GAAATTGGGTCACTTTTGCA+GGG - chr7.1:18355375-18355394 MS.gene013874:intron 40.0%
!!! TGAAATTGGGTCACTTTTGC+AGG - chr7.1:18355374-18355393 MS.gene013874:intron 40.0%
AAGAAGCTGTGGATAGTAGC+AGG - chr7.1:18352363-18352382 MS.gene013874:intron 45.0%
AGCCACTAAGGAAAAGGGTA+TGG - chr7.1:18352331-18352350 MS.gene013874:CDS 45.0%
AGCTGCAGCAAAGAAACCAA+GGG + chr7.1:18353897-18353916 None:intergenic 45.0%
CCATTGATGCTCTGGCTATA+TGG - chr7.1:18353736-18353755 MS.gene013874:CDS 45.0%
GAGAAACCCTTCCATGTATC+AGG + chr7.1:18353348-18353367 None:intergenic 45.0%
GCATTAGCCACATCTGGATT+TGG + chr7.1:18354148-18354167 None:intergenic 45.0%
GTCCTAGTCAGGTTTGCAAA+TGG - chr7.1:18352495-18352514 MS.gene013874:CDS 45.0%
GTGTCAAATGAACTAGGCAG+AGG - chr7.1:18354004-18354023 MS.gene013874:intron 45.0%
TAGCTGCAGCAAAGAAACCA+AGG + chr7.1:18353898-18353917 None:intergenic 45.0%
TGGGAAATGATGATAGCCCT+TGG - chr7.1:18353878-18353897 MS.gene013874:CDS 45.0%
TTGGTTTCTTTGCTGCAGCT+AGG - chr7.1:18353897-18353916 MS.gene013874:CDS 45.0%
TTTCACCCCAAATCCAGATG+TGG - chr7.1:18354138-18354157 MS.gene013874:intron 45.0%
TTTCCCACCCATTGATGTTG+AGG + chr7.1:18353865-18353884 None:intergenic 45.0%
! ATAGGTGTTTCTGTTGGAGC+TGG - chr7.1:18354519-18354538 MS.gene013874:CDS 45.0%
! CCATATAGCCAGAGCATCAA+TGG + chr7.1:18353739-18353758 None:intergenic 45.0%
! GCCACTAAGGAAAAGGGTAT+GGG - chr7.1:18352332-18352351 MS.gene013874:intron 45.0%
! TCCCATACCCTTTTCCTTAG+TGG + chr7.1:18352336-18352355 None:intergenic 45.0%
! TGGCCAAGTGCCACTAAAAT+TGG + chr7.1:18353045-18353064 None:intergenic 45.0%
!! AAGGGTTTTGATGCTGCAGA+AGG + chr7.1:18352296-18352315 None:intergenic 45.0%
!! CTTTTGCAGGGTGTTTGGAT+TGG - chr7.1:18355387-18355406 MS.gene013874:intron 45.0%
!!! ACATTATTTATAAATTTTTT+TGG - chr7.1:18354734-18354753 MS.gene013874:CDS 5.0%
AGGAGGAAGAAGAGCCACTA+AGG - chr7.1:18352319-18352338 MS.gene013874:CDS 50.0%
AGTGTCCAACCTGTGCTTTC+TGG - chr7.1:18354214-18354233 MS.gene013874:CDS 50.0%
CAGCCTCAACATCAATGGGT+GGG - chr7.1:18353859-18353878 MS.gene013874:CDS 50.0%
CAGGCCCTGCCATATTCAAT+AGG - chr7.1:18352382-18352401 MS.gene013874:intron 50.0%
CCAACTGCATTAGCCACATC+TGG + chr7.1:18354154-18354173 None:intergenic 50.0%
CCAGATGTGGCTAATGCAGT+TGG - chr7.1:18354151-18354170 MS.gene013874:intron 50.0%
GATAGGAGAGACCCCAACAA+AGG + chr7.1:18354939-18354958 None:intergenic 50.0%
GATGTTTCGCGCTAATGCGA+TGG + chr7.1:18354763-18354782 None:intergenic 50.0%
GCAGCATCAAAACCCTTCAG+AGG - chr7.1:18352299-18352318 MS.gene013874:CDS 50.0%
GCATCAAAACCCTTCAGAGG+AGG - chr7.1:18352302-18352321 MS.gene013874:CDS 50.0%
GCTCTTCTTCCTCCTCTGAA+GGG + chr7.1:18352314-18352333 None:intergenic 50.0%
GGGAAGAAAGCAAGAAGCTG+TGG - chr7.1:18352352-18352371 MS.gene013874:intron 50.0%
TAACGGCGAGACGGTCTATT+TGG + chr7.1:18354460-18354479 None:intergenic 50.0%
TAAGACTGACTGGGACAAGC+AGG - chr7.1:18355461-18355480 MS.gene013874:CDS 50.0%
!!! GGTCACTTTTGCAGGGTGTT+TGG - chr7.1:18355382-18355401 MS.gene013874:intron 50.0%
ACTAGGCAGAGGGAGTTCCA+AGG - chr7.1:18354015-18354034 MS.gene013874:CDS 55.0%
AGGAGAGACCCCAACAAAGG+TGG + chr7.1:18354936-18354955 None:intergenic 55.0%
GCAGCCTCAACATCAATGGG+TGG - chr7.1:18353858-18353877 MS.gene013874:CDS 55.0%
GGCTCTTCTTCCTCCTCTGA+AGG + chr7.1:18352315-18352334 None:intergenic 55.0%
TCTCTGCTGTAACGGCGAGA+CGG + chr7.1:18354469-18354488 None:intergenic 55.0%
! GTGTTTCTGTTGGAGCTGGC+TGG - chr7.1:18354523-18354542 MS.gene013874:CDS 55.0%
! TGCGATTGAGGTAGCATCGG+TGG + chr7.1:18352600-18352619 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 18352267 18355664 18352267 ID=MS.gene013874
chr7.1 mRNA 18352267 18355664 18352267 ID=MS.gene013874.t1;Parent=MS.gene013874
chr7.1 exon 18355407 18355664 18355407 ID=MS.gene013874.t1.exon1;Parent=MS.gene013874.t1
chr7.1 CDS 18355407 18355664 18355407 ID=cds.MS.gene013874.t1;Parent=MS.gene013874.t1
chr7.1 exon 18354498 18355036 18354498 ID=MS.gene013874.t1.exon2;Parent=MS.gene013874.t1
chr7.1 CDS 18354498 18355036 18354498 ID=cds.MS.gene013874.t1;Parent=MS.gene013874.t1
chr7.1 exon 18354174 18354260 18354174 ID=MS.gene013874.t1.exon3;Parent=MS.gene013874.t1
chr7.1 CDS 18354174 18354260 18354174 ID=cds.MS.gene013874.t1;Parent=MS.gene013874.t1
chr7.1 exon 18354013 18354069 18354013 ID=MS.gene013874.t1.exon4;Parent=MS.gene013874.t1
chr7.1 CDS 18354013 18354069 18354013 ID=cds.MS.gene013874.t1;Parent=MS.gene013874.t1
chr7.1 exon 18353696 18353934 18353696 ID=MS.gene013874.t1.exon5;Parent=MS.gene013874.t1
chr7.1 CDS 18353696 18353934 18353696 ID=cds.MS.gene013874.t1;Parent=MS.gene013874.t1
chr7.1 exon 18353290 18353408 18353290 ID=MS.gene013874.t1.exon6;Parent=MS.gene013874.t1
chr7.1 CDS 18353290 18353408 18353290 ID=cds.MS.gene013874.t1;Parent=MS.gene013874.t1
chr7.1 exon 18352449 18352535 18352449 ID=MS.gene013874.t1.exon7;Parent=MS.gene013874.t1
chr7.1 CDS 18352449 18352535 18352449 ID=cds.MS.gene013874.t1;Parent=MS.gene013874.t1
chr7.1 exon 18352267 18352350 18352267 ID=MS.gene013874.t1.exon8;Parent=MS.gene013874.t1
chr7.1 CDS 18352267 18352350 18352267 ID=cds.MS.gene013874.t1;Parent=MS.gene013874.t1
Gene Sequence

>MS.gene013874

ATGGGATCAGAAGAACTAAACAAGAACCTTCTGCAGCATCAAAACCCTTCAGAGGAGGAAGAAGAGCCACTAAGGAAAAGGGTATGGGAAGAAAGCAAGAAGCTGTGGATAGTAGCAGGCCCTGCCATATTCAATAGGTTTTCAACATTTGGTATCATGGTAGTTGCTCAATCCTTCATTGGTCATATTGGTTCAACCGAATTAGCTGCTTATGCCCTTGTTATGACTGTCCTAGTCAGGTTTGCAAATGGTATTCTGGTAAGTCAATTGTTCCTCAATCGTTTAAATCGTAGTCGCAATTCTGATTTTGCAAAGAATCGTGATCAAATACCACCGATGCTACCTCAATCGCAATTGTATTATAGACATAAAAAAACCTTGATGTCACAAATACAAAACTGCGATCGACGGCAAGTTATGAAAATTTATATCTTATCGCCGATGCTACCTCAATCACAATAGTATTATCGATATAAAAAAAACCATATGTCACAAATACAATTGCAGTTGATGGCAATTTATGAAAATTTTGCTTTGATAAATAGTCTTTATGTATTCATATCTTGCAAGTGAAAAAATAAGGTAAAATTATTTACAATGTTTTTTATGAGCAAATTGAAAATTGTAGTTGGGTATGGCAAGTGCATTAGAAACACTATGTGGACAAGCATATGGAGCAAAACAATATGATATGCTTGGAGTGTATCTTCAAAGATCATGGATAGTTATATTCTTAACCTCAATTCTTCTTCTTCCAATTTACATTTTTACCAAACCAATTTTAGTGGCACTTGGCCAAGATGAAAATATTGCACAAGTTGCTGGAAGCATTTCAATATGGTCAATAGGTATAGTATTTGCTTTCTCTGCATCATTCACTTGCCAAATGTTCCTACAAGCACAAAGCAAGAACAAGATTATTGCTTACCTTGCAGCAGTTTCAATTTCAATACATGTTTTTATGTCATGGCTTTTAACTGTGAAGTTCAAGTTTGGCCTTAATGGTGCAATGACATCAATCCTTTTGGCTTATTGGATGCCAAATTTGGGCCAGCTTATTTTTATCATGACAAAATGTCCTGATACATGGAAGGGTTTCTCATTTTTGGCCTTCAAAGATCTTTGGCCTGTTATCAAGCTTTCTTTGTCTTCTGGAGCTATGTTATGGTAAGAATTTGAGCAATTTTCATAATCAATTTTTAAGATTATGTATGGTTTGTAATCAAAGTGTGTTTGGATGAACTTTTAACAATCATGATTTTGAATAAGCTTGATTTTGTAAAATTGATTTTGAATTAAGTTGATTTCTGTTTGAATGTTTTTGAACTAAAACAAGTTTCAATTAAATCTAGTGTGAATATTTAGCCCAATAAGACTAACATAAAGCTATGGTCACTTTTACAGTCTTGAAATATGGTACAACACAGTTTTGATTCTTCTAACAGGAAACATGGAAAATGCTGAGATTTCCATTGATGCTCTGGCTATATGGTACTATATCTCTCATTCTCATTCTTACTTTTACTTCAAAATTTAGCATTAAGAGTCATATTAAAACTAATCTATTGATTTAATAAAATTATATTATTTTGCAGCCTCAACATCAATGGGTGGGAAATGATGATAGCCCTTGGTTTCTTTGCTGCAGCTAGGTACATCATTGTGATCACAATCTTATTGAGAAGTTTCTTGTCAGTACTAAATGTTAGGCTAAATTACATTTTTTGCAGTGTTAGGGTGTCAAATGAACTAGGCAGAGGGAGTTCCAAGGCAGCAAAATTTTCCATTGTGATAACAGTGCTCACATCATTTTCCATTGGATTTGTGCTATTCTTGATCTTTCTGTTCCTAAGAGGAAGACTTGCTTACATTTTCACCCCAAATCCAGATGTGGCTAATGCAGTTGGAGATCTGTCACCTTTGTTATCATTCTCCATATTAATGAACAGTGTCCAACCTGTGCTTTCTGGTAAATATTTACATCATCACATTATTTGCTATAATCTATTGCTTATTGTTTCAATTTATTTTGTTACATTTCTTAAACTTTTAGTCCTTAAGATTATAGGGGGCATGTGAAGCTTATCTAATATTCTCTGCCATTAATTAGAGATCAAATAGCTCAGATTACACAAACAACAAATTAATTAATTATAAATGATCACAACCGTTGATTTAAGATCTGACAGTCCAAATAGACCGTCTCGCCGTTACAGCAGAGAATCCAAATTCATCTAAAAATGTTGTTGTGAATAGGTGTTTCTGTTGGAGCTGGCTGGCAAAGTGTTGTAGCATATGTAAACATAGGCTGCTATTACCTAATTGGTATTCCTATTGGAGTTGTGCTTGGTAATCTTCTTCATTTGCAAGTTAAGGTAATTCATTTGTCATTTACAAGAGAAAAAGTTACTTTGCACAAATGTGAAGAGTAAAATATTAATAATACTAGTATACTCTTTACTTCGCTACATTATTTATAAATTTTTTTGGTAACCATCGCATTAGCGCGAAACATCCATTGATGACTAATCTCTTACAGGGAACCTTACCGATTATATTTAGTGGGATGTCCCCTTCCAACTATATTTTTTGGTAATCATATCATTGGTGCGAAGTATTTATCATCTTTCATAGACAACTACATATGTGTTGGGGAATCTAACTTACCACCTTTGTTGGGGTCTCTCCTATCAACCATATTTTTTCTTCGACGAGTCTCAAACGTGAGACCTTGCTTATCCAAATCCAATTCACCCTAACCAATGTAATGTTGATATATTATTAATTTACTAAACTACGTGGGTTCTGTTACTTTGTTTATATATAAAAGAAATCAGATCAAATGAGATACATCGTCCTCATTGAAGATTTAGAATAAAATTTAACGTAAAACCTATCATTTATGAAATCATGGACTAAAACTCAAGTCACTACCATGAATGAAATGTCTAACCATTTGTATCAAATGCAATTGGTTGGTTGGTTGGGATTCCATTAATTTTTTGACAAATATATATACCAAATAGAAAATGGGATCCACGTATATAATTTAAAGAGAGATTAGTGCTTCCTATATCGCATAATGATTAAAGAGATATTGTTGGTGCTGAAATTGGGTCACTTTTGCAGGGTGTTTGGATTGGAATGTTGTTTGGAACTTTTGTTCAAACCATAATGCTTATGATAATCACATTTAAGACTGACTGGGACAAGCAGGTATTAGTCAATTTACTATATTCTCTATAATTGTGAAATTGATTGATATCCGTTTCTTATAATTTTAAGCAGCTAATAATAACATATGTATTTTACAGGTTGAGATTGCTAGAAATCGTGTTAATAAATGGGCTGTAGTGGAGAATGATGAATCAAACAACACATCAAGGATATCCAACTAA
Protein sequence

>MS.gene013874.t1

MGSEELNKNLLQHQNPSEEEEEPLRKRVWEESKKLWIVAGPAIFNRFSTFGIMVVAQSFIGHIGSTELAAYALVMTVLVRFANGILLGMASALETLCGQAYGAKQYDMLGVYLQRSWIVIFLTSILLLPIYIFTKPILVALGQDENIAQVAGSISIWSIGIVFAFSASFTCQMFLQAQSKNKIIAYLAAVSISIHVFMSWLLTVKFKFGLNGAMTSILLAYWMPNLGQLIFIMTKCPDTWKGFSFLAFKDLWPVIKLSLSSGAMLCLEIWYNTVLILLTGNMENAEISIDALAICLNINGWEMMIALGFFAAASVRVSNELGRGSSKAAKFSIVITVLTSFSIGFVLFLIFLFLRGRLAYIFTPNPDVANAVGDLSPLLSFSILMNSVQPVLSGVSVGAGWQSVVAYVNIGCYYLIGIPIGVVLGNLLHLQVKGVWIGMLFGTFVQTIMLMIITFKTDWDKQVEIARNRVNKWAVVENDESNNTSRISN